AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59610.t1 MTR_8g028140 97.975 395 8 0 1 395 1 395 0.0 778
MS.gene59610.t1 MTR_8g028140 98.052 308 6 0 88 395 8 315 0.0 603
MS.gene59610.t1 MTR_2g021030 28.460 383 235 10 22 368 11 390 2.63e-30 122
MS.gene59610.t1 MTR_2g021030 26.902 368 192 9 52 368 152 493 1.17e-23 103
MS.gene59610.t1 MTR_2g021030 28.839 267 171 9 75 333 333 588 1.18e-18 88.2
MS.gene59610.t1 MTR_2g021030 27.941 272 192 3 97 364 296 567 8.99e-18 85.5
MS.gene59610.t1 MTR_2g021030 26.515 264 186 5 95 352 320 581 2.08e-16 81.3
MS.gene59610.t1 MTR_2g021030 28.533 368 230 10 22 369 11 365 7.59e-29 117
MS.gene59610.t1 MTR_2g021030 27.564 312 168 8 52 334 152 434 1.30e-24 105
MS.gene59610.t1 MTR_1g114610 28.286 350 215 7 22 368 20 336 8.85e-29 116
MS.gene59610.t1 MTR_1g012520 27.513 378 245 7 7 368 53 417 6.29e-27 113
MS.gene59610.t1 MTR_1g012520 28.378 296 189 7 82 374 360 635 5.14e-17 83.2
MS.gene59610.t1 MTR_1g012520 22.849 372 217 9 66 374 193 557 1.04e-13 73.2
MS.gene59610.t1 MTR_7g112570 25.057 435 233 14 14 385 41 445 3.05e-21 96.3
MS.gene59610.t1 MTR_7g112570 34.459 148 71 2 97 219 442 588 2.59e-18 87.4
MS.gene59610.t1 MTR_7g112570 28.063 253 154 6 95 345 363 589 4.02e-16 80.5
MS.gene59610.t1 MTR_7g112570 24.542 273 181 6 91 363 334 581 1.30e-14 75.9
MS.gene59610.t1 MTR_7g112570 25.057 435 233 14 14 385 41 445 3.25e-21 95.9
MS.gene59610.t1 MTR_7g112570 34.459 148 71 2 97 219 442 588 2.62e-18 87.4
MS.gene59610.t1 MTR_7g112570 28.063 253 154 6 95 345 363 589 4.34e-16 80.5
MS.gene59610.t1 MTR_7g112570 24.542 273 181 6 91 363 334 581 1.25e-14 75.9
MS.gene59610.t1 MTR_7g112570 25.057 435 233 14 14 385 41 445 3.83e-21 95.9
MS.gene59610.t1 MTR_7g112570 32.934 167 83 3 97 235 442 607 4.38e-19 89.7
MS.gene59610.t1 MTR_7g112570 27.915 283 191 9 95 370 363 639 3.96e-18 86.7
MS.gene59610.t1 MTR_3g107280 27.273 374 242 9 17 376 66 423 8.04e-21 94.7
MS.gene59610.t1 MTR_3g107280 22.131 366 215 9 66 368 191 549 2.05e-12 69.3
MS.gene59610.t1 MTR_3g107280 26.990 289 172 8 123 374 347 633 4.15e-12 68.2
MS.gene59610.t1 MTR_4g114640 26.685 356 240 8 18 364 60 403 4.01e-19 89.7
MS.gene59610.t1 MTR_4g013255 26.557 305 169 9 93 368 227 505 1.28e-18 88.2
MS.gene59610.t1 MTR_4g013255 25.830 271 192 7 97 361 335 602 4.92e-16 80.5
MS.gene59610.t1 MTR_4g013255 28.926 242 144 9 92 331 408 623 2.51e-15 78.2
MS.gene59610.t1 MTR_4g013255 25.000 360 190 8 93 373 126 484 1.11e-14 76.3
MS.gene59610.t1 MTR_4g013255 25.341 367 201 10 41 378 39 361 1.26e-13 72.8
MS.gene59610.t1 MTR_1g054625 27.602 221 154 3 122 337 13 232 9.49e-17 79.7
MS.gene59610.t1 MTR_1g054625 28.616 318 184 12 59 364 17 303 1.95e-16 80.5
MS.gene59610.t1 MTR_1g054625 25.321 312 187 7 31 337 59 329 7.40e-16 78.6
MS.gene59610.t1 MTR_3g088895 36.893 103 64 1 95 196 180 282 1.81e-12 68.6
MS.gene59610.t1 MTR_1g029500 36.893 103 64 1 95 196 167 269 3.70e-12 67.4
MS.gene59610.t1 MTR_1g018790 22.826 460 213 15 19 385 61 471 6.55e-12 67.4
MS.gene59610.t1 MTR_4g114650 24.930 357 216 12 18 364 55 369 5.94e-11 64.7
MS.gene59610.t1 MTR_4g114650 24.930 357 216 12 18 364 59 373 7.18e-11 64.3
MS.gene59610.t1 MTR_4g114650 24.930 357 216 12 18 364 110 424 7.75e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59610.t1 AT3G07550 58.763 388 154 3 8 390 1 387 4.23e-149 428
MS.gene59610.t1 AT3G07550 58.763 388 154 3 8 390 1 387 4.23e-149 428
MS.gene59610.t1 AT3G07550 54.381 388 144 4 8 390 1 360 8.58e-130 378
MS.gene59610.t1 AT5G23340 28.378 370 238 7 22 366 10 377 1.96e-33 129
MS.gene59610.t1 AT4G15475 28.297 417 218 12 22 368 11 416 1.95e-30 123
MS.gene59610.t1 AT4G15475 28.364 275 187 5 97 364 296 567 1.92e-22 99.8
MS.gene59610.t1 AT4G15475 27.698 278 170 6 95 368 218 468 3.02e-18 87.0
MS.gene59610.t1 AT4G15475 32.090 134 90 1 95 228 450 582 1.89e-13 72.4
MS.gene59610.t1 AT5G25350 26.431 367 237 7 17 371 53 398 3.36e-22 99.0
MS.gene59610.t1 AT2G25490 26.648 364 233 7 18 368 63 405 1.24e-21 97.4
MS.gene59610.t1 AT2G25490 28.082 292 193 8 82 360 164 451 4.21e-15 77.4
MS.gene59610.t1 AT2G25490 27.459 244 145 9 108 345 374 591 1.16e-11 67.0
MS.gene59610.t1 AT5G27920 27.679 336 199 10 66 369 99 422 9.30e-19 88.6
MS.gene59610.t1 AT5G27920 26.062 353 179 7 78 373 201 528 5.05e-18 86.7
MS.gene59610.t1 AT5G27920 27.240 279 189 9 100 370 330 602 6.87e-17 83.2
MS.gene59610.t1 AT5G27920 28.261 230 139 7 97 325 405 609 2.31e-13 72.0
MS.gene59610.t1 AT3G58530 25.926 243 156 5 122 363 112 331 1.26e-17 84.0
MS.gene59610.t1 AT3G58530 26.316 171 98 2 96 242 138 304 1.13e-11 66.2
MS.gene59610.t1 AT1G21410 25.418 299 179 9 90 376 85 351 2.04e-16 80.5
MS.gene59610.t1 AT1G21410 27.128 188 132 3 77 262 125 309 1.22e-12 68.9
MS.gene59610.t1 AT1G21410 25.418 299 179 9 90 376 85 351 2.04e-16 80.5
MS.gene59610.t1 AT1G21410 27.128 188 132 3 77 262 125 309 1.22e-12 68.9
MS.gene59610.t1 AT5G01720 24.490 343 199 7 101 385 232 572 7.84e-16 79.7
MS.gene59610.t1 AT5G01720 24.390 287 182 8 90 345 273 555 1.47e-15 79.0
MS.gene59610.t1 AT5G01720 24.364 275 160 5 122 371 151 402 7.81e-13 70.5
MS.gene59610.t1 AT1G77000 35.897 117 71 2 81 196 158 271 2.26e-13 71.2
MS.gene59610.t1 AT1G77000 23.729 295 152 8 107 375 103 350 4.80e-13 70.5
MS.gene59610.t1 AT1G77000 28.090 178 123 3 87 262 135 309 1.07e-12 69.3
MS.gene59610.t1 AT1G77000 35.897 117 71 2 81 196 158 271 2.26e-13 71.2
MS.gene59610.t1 AT1G77000 23.729 295 152 8 107 375 103 350 4.80e-13 70.5
MS.gene59610.t1 AT1G77000 28.090 178 123 3 87 262 135 309 1.07e-12 69.3
MS.gene59610.t1 AT1G77000 35.714 112 71 1 107 217 103 214 5.58e-13 68.9
MS.gene59610.t1 AT1G77000 35.714 112 71 1 107 217 103 214 5.58e-13 68.9

Find 97 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTCCGACGGTTGAAATTT+TGG 0.184394 8.1:-73646595 None:intergenic
CAATTCCGACCACCCCTTCT+AGG 0.256053 8.1:-73647141 None:intergenic
CATGCAGTCTCTTCAAATTC+TGG 0.257571 8.1:-73647405 None:intergenic
TGCCTCAATCTTACTGATAA+TGG 0.310210 8.1:+73647436 MS.gene59610:CDS
CCCTTCTTCTTTGTCTGCTA+AGG 0.318498 8.1:+73646649 MS.gene59610:CDS
ATCTACACATTCGGAAGTTT+AGG 0.320698 8.1:-73647264 None:intergenic
GGGCTATCCCTAGTTGCTTC+TGG 0.330852 8.1:+73646848 MS.gene59610:CDS
TGTCATGAGGTGAGTATATC+TGG 0.346053 8.1:+73647358 MS.gene59610:CDS
TTTACACCGTCCATATTCAT+AGG 0.354668 8.1:+73646681 MS.gene59610:CDS
TGCACGGAGCTCGATGATTC+AGG 0.355920 8.1:+73646749 MS.gene59610:CDS
CGTACTGATCGTGAATCATT+TGG 0.356173 8.1:+73646545 MS.gene59610:CDS
GCCTTAGCAACCTATGAATA+TGG 0.358247 8.1:-73646691 None:intergenic
GATGGAGGTAGCACCAAGTT+TGG 0.377119 8.1:-73646471 None:intergenic
CTCTACATGCACGAGAGATT+TGG 0.377470 8.1:-73647098 None:intergenic
TCTTGTAAACTTAGCCTAGA+AGG 0.380073 8.1:+73647127 MS.gene59610:CDS
GGAGATCCCCTGCGTGGAAT+AGG 0.381410 8.1:+73647220 MS.gene59610:CDS
ACAACCATTCAAGTACAAAA+TGG 0.391558 8.1:-73647494 None:intergenic
TGTCTTAACATTACTGATGA+AGG 0.429447 8.1:+73646905 MS.gene59610:CDS
TCAACCAGTATCATCTGAAT+GGG 0.437196 8.1:-73647612 None:intergenic
GTCGGAATTGTTAGCGGTGG+CGG 0.438075 8.1:+73647154 MS.gene59610:CDS
CAGGGGCGATGTTTGCATAA+AGG 0.439933 8.1:+73647558 MS.gene59610:CDS
CCTTCTTCTTTGTCTGCTAA+GGG 0.452418 8.1:+73646650 MS.gene59610:CDS
AAGAGCTTTCAACCCTTTGT+CGG 0.454218 8.1:-73646996 None:intergenic
TGCTTAAGTTGGTCACCATC+GGG 0.456966 8.1:+73647199 MS.gene59610:CDS
ATGGAAGATCTTTCCAAACT+TGG 0.457693 8.1:+73646458 MS.gene59610:CDS
TCTTCAGATGAGTCTTGAAA+AGG 0.458770 8.1:+73646430 None:intergenic
TAGATGTATCTTGCTTAAGT+TGG 0.458772 8.1:+73647188 MS.gene59610:CDS
TATCATCTGAATGGGGAGTA+AGG 0.461605 8.1:-73647604 None:intergenic
ATCAACCAGTATCATCTGAA+TGG 0.466552 8.1:-73647613 None:intergenic
TTCAAGTAGTGTACATCCCT+TGG 0.473496 8.1:-73647317 None:intergenic
TTGAATAACTCTAATGCTAA+AGG 0.480544 8.1:-73647529 None:intergenic
TGAACCGTAGCTTAGCAAAC+GGG 0.481477 8.1:-73646777 None:intergenic
TTGCTTAAGTTGGTCACCAT+CGG 0.483575 8.1:+73647198 MS.gene59610:CDS
ATAATAGTAAGGCAGTCATT+TGG 0.489681 8.1:-73646503 None:intergenic
TTGAACCGTAGCTTAGCAAA+CGG 0.494178 8.1:-73646778 None:intergenic
TTGGCTTGACTTGCAGCCGA+TGG 0.495808 8.1:+73646564 MS.gene59610:CDS
GATGTACACTACTTGAAGAA+TGG 0.498471 8.1:+73647323 MS.gene59610:CDS
CCCTTAGCAGACAAAGAAGA+AGG 0.502580 8.1:-73646650 None:intergenic
TGTTTGAAAGTCACTAACTA+CGG 0.506597 8.1:+73646827 MS.gene59610:CDS
CTTGTAAACTTAGCCTAGAA+GGG 0.509036 8.1:+73647128 MS.gene59610:CDS
TTAGAGTCTTTATCTCTATG+TGG 0.511065 8.1:+73646725 MS.gene59610:CDS
CAGAAACTGATCTACACATT+CGG 0.516875 8.1:-73647273 None:intergenic
TAGAGTTATTCAAGTCTCAC+AGG 0.520611 8.1:+73647539 MS.gene59610:CDS
TTCTATTATTGCAATAGCCA+AGG 0.528487 8.1:+73647300 MS.gene59610:CDS
GTTTGAAAGTCACTAACTAC+GGG 0.539400 8.1:+73646828 MS.gene59610:CDS
ATAAGTGGTGTTGGATTCGA+AGG 0.541644 8.1:+73647070 MS.gene59610:CDS
GCTCACAAATATCCGACAAA+GGG 0.542576 8.1:+73646984 MS.gene59610:CDS
AGGGACAACCAGAAGCAACT+AGG 0.542948 8.1:-73646856 None:intergenic
ATATTTGTGAGCAGTATGAC+AGG 0.553062 8.1:-73646973 None:intergenic
TCCATATTCATAGGTTGCTA+AGG 0.554256 8.1:+73646690 MS.gene59610:CDS
ATATCTGGATGGCAAGCAGT+GGG 0.554297 8.1:+73647373 MS.gene59610:CDS
ATACGTTAATAGCTTGAAGC+TGG 0.554829 8.1:-73647033 None:intergenic
AACCGTCTCGTAATGCCCGC+AGG 0.559683 8.1:-73647459 None:intergenic
TAGGCTAAGTTTACAAGACT+CGG 0.561965 8.1:-73647122 None:intergenic
TCACACTGTGAGCGTATAAG+TGG 0.563279 8.1:+73647055 MS.gene59610:CDS
TGACAACAATTAGTCTCTAT+CGG 0.563574 8.1:+73646882 MS.gene59610:CDS
TCTTACTGATAATGGCCTGC+GGG 0.566190 8.1:+73647444 MS.gene59610:CDS
GGGACAACCAGAAGCAACTA+GGG 0.569174 8.1:-73646855 None:intergenic
GGCCATTATCAGTAAGATTG+AGG 0.577952 8.1:-73647438 None:intergenic
TCTATTATTGCAATAGCCAA+GGG 0.578035 8.1:+73647301 MS.gene59610:CDS
GAGTCTTGAAAAGGTTGACA+TGG 0.579264 8.1:+73646439 MS.gene59610:CDS
AGACTAATTGTTGTCAATGA+GGG 0.583295 8.1:-73646875 None:intergenic
TGTGAGCGTATAAGTGGTGT+TGG 0.587732 8.1:+73647061 MS.gene59610:CDS
AGGAAAATCCTATTCCACGC+AGG 0.588987 8.1:-73647228 None:intergenic
GAGACTAATTGTTGTCAATG+AGG 0.594035 8.1:-73646876 None:intergenic
CTAACCCGTTTGCTAAGCTA+CGG 0.594245 8.1:+73646773 MS.gene59610:CDS
GGGGTGGTCGGAATTGTTAG+CGG 0.594594 8.1:+73647148 MS.gene59610:CDS
TGCTCACAAATATCCGACAA+AGG 0.596634 8.1:+73646983 MS.gene59610:CDS
CAAATCTCTCGTGCATGTAG+AGG 0.596637 8.1:+73647099 MS.gene59610:CDS
TTTATCTCTATGTGGTTGCA+CGG 0.599367 8.1:+73646733 MS.gene59610:CDS
CCTTAGCAGACAAAGAAGAA+GGG 0.605280 8.1:-73646649 None:intergenic
ATCTTACTGATAATGGCCTG+CGG 0.605806 8.1:+73647443 MS.gene59610:CDS
GGAAAATCCTATTCCACGCA+GGG 0.607193 8.1:-73647227 None:intergenic
CTTAGCCTAGAAGGGGTGGT+CGG 0.618325 8.1:+73647136 MS.gene59610:CDS
TATATCTGGATGGCAAGCAG+TGG 0.618448 8.1:+73647372 MS.gene59610:CDS
CCACGCAGGGGATCTCCCGA+TGG 0.619884 8.1:-73647214 None:intergenic
ATATCCAAAATTTCAACCGT+CGG 0.624409 8.1:+73646591 MS.gene59610:CDS
AGAGTTATTCAAGTCTCACA+GGG 0.626131 8.1:+73647540 MS.gene59610:CDS
ATTTGGTAAGTGCACGATGG+AGG 0.627230 8.1:-73646486 None:intergenic
TTTCAAAGATAAGCAAGCAG+TGG 0.631769 8.1:-73646942 None:intergenic
TGTTTGCATAAAGGAAGAAG+AGG 0.634712 8.1:+73647567 MS.gene59610:CDS
GGCCTGCGGGCATTACGAGA+CGG 0.641040 8.1:+73647457 MS.gene59610:CDS
GTGGTCGGAATTGTTAGCGG+TGG 0.643552 8.1:+73647151 MS.gene59610:CDS
TAGCAACCTATGAATATGGA+CGG 0.643940 8.1:-73646687 None:intergenic
TAAACTTAGCCTAGAAGGGG+TGG 0.646086 8.1:+73647132 MS.gene59610:CDS
TTGTAAACTTAGCCTAGAAG+GGG 0.648246 8.1:+73647129 MS.gene59610:CDS
GTCATTTGGTAAGTGCACGA+TGG 0.649937 8.1:-73646489 None:intergenic
GAACTTAGCATTATGTCATG+AGG 0.663036 8.1:+73647345 MS.gene59610:CDS
ACTCAAATTGCAGAGTCCGA+CGG 0.672603 8.1:-73646607 None:intergenic
CCATCGGGAGATCCCCTGCG+TGG 0.678463 8.1:+73647214 MS.gene59610:CDS
CAACCAGTATCATCTGAATG+GGG 0.689748 8.1:-73647611 None:intergenic
ATGAGGTGAGTATATCTGGA+TGG 0.692395 8.1:+73647362 MS.gene59610:CDS
TAAGTGGTGTTGGATTCGAA+GGG 0.692526 8.1:+73647071 MS.gene59610:CDS
TATCTGGATGGCAAGCAGTG+GGG 0.726038 8.1:+73647374 MS.gene59610:CDS
GAAAATCCTATTCCACGCAG+GGG 0.737306 8.1:-73647226 None:intergenic
GGTTGAAAGCTCTTACTCAG+CGG 0.742567 8.1:+73647005 MS.gene59610:CDS
GAGTTATTCAAGTCTCACAG+GGG 0.770901 8.1:+73647541 MS.gene59610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTACAAAAACTTAATC+TGG + chr8.1:73646799-73646818 MS.gene59610:CDS 15.0%
!! AACCATGAAAAATAATAGTA+AGG - chr8.1:73646517-73646536 None:intergenic 20.0%
! TTGAATAACTCTAATGCTAA+AGG - chr8.1:73647532-73647551 None:intergenic 25.0%
!!! TGCCTTACTATTATTTTTCA+TGG + chr8.1:73646512-73646531 MS.gene59610:CDS 25.0%
ACAACCATTCAAGTACAAAA+TGG - chr8.1:73647497-73647516 None:intergenic 30.0%
AGACTAATTGTTGTCAATGA+GGG - chr8.1:73646878-73646897 None:intergenic 30.0%
ATAATAGTAAGGCAGTCATT+TGG - chr8.1:73646506-73646525 None:intergenic 30.0%
ATATCCAAAATTTCAACCGT+CGG + chr8.1:73646591-73646610 MS.gene59610:CDS 30.0%
TAGATGTATCTTGCTTAAGT+TGG + chr8.1:73647188-73647207 MS.gene59610:CDS 30.0%
TCTATTATTGCAATAGCCAA+GGG + chr8.1:73647301-73647320 MS.gene59610:CDS 30.0%
TGTCTTAACATTACTGATGA+AGG + chr8.1:73646905-73646924 MS.gene59610:CDS 30.0%
TGTTTGAAAGTCACTAACTA+CGG + chr8.1:73646827-73646846 MS.gene59610:CDS 30.0%
TTAGAGTCTTTATCTCTATG+TGG + chr8.1:73646725-73646744 MS.gene59610:CDS 30.0%
TTCTATTATTGCAATAGCCA+AGG + chr8.1:73647300-73647319 MS.gene59610:CDS 30.0%
! TGACAACAATTAGTCTCTAT+CGG + chr8.1:73646882-73646901 MS.gene59610:CDS 30.0%
AGAGTTATTCAAGTCTCACA+GGG + chr8.1:73647540-73647559 MS.gene59610:CDS 35.0%
ATACGTTAATAGCTTGAAGC+TGG - chr8.1:73647036-73647055 None:intergenic 35.0%
ATATTTGTGAGCAGTATGAC+AGG - chr8.1:73646976-73646995 None:intergenic 35.0%
ATCTACACATTCGGAAGTTT+AGG - chr8.1:73647267-73647286 None:intergenic 35.0%
ATGGAAGATCTTTCCAAACT+TGG + chr8.1:73646458-73646477 MS.gene59610:CDS 35.0%
CAGAAACTGATCTACACATT+CGG - chr8.1:73647276-73647295 None:intergenic 35.0%
CTTGTAAACTTAGCCTAGAA+GGG + chr8.1:73647128-73647147 MS.gene59610:CDS 35.0%
GAACTTAGCATTATGTCATG+AGG + chr8.1:73647345-73647364 MS.gene59610:CDS 35.0%
GAGACTAATTGTTGTCAATG+AGG - chr8.1:73646879-73646898 None:intergenic 35.0%
GATGTACACTACTTGAAGAA+TGG + chr8.1:73647323-73647342 MS.gene59610:CDS 35.0%
GTTTGAAAGTCACTAACTAC+GGG + chr8.1:73646828-73646847 MS.gene59610:CDS 35.0%
TAGAGTTATTCAAGTCTCAC+AGG + chr8.1:73647539-73647558 MS.gene59610:CDS 35.0%
TAGCAACCTATGAATATGGA+CGG - chr8.1:73646690-73646709 None:intergenic 35.0%
TAGGCTAAGTTTACAAGACT+CGG - chr8.1:73647125-73647144 None:intergenic 35.0%
TCCATATTCATAGGTTGCTA+AGG + chr8.1:73646690-73646709 MS.gene59610:CDS 35.0%
TCTTGTAAACTTAGCCTAGA+AGG + chr8.1:73647127-73647146 MS.gene59610:CDS 35.0%
TGCCTCAATCTTACTGATAA+TGG + chr8.1:73647436-73647455 MS.gene59610:CDS 35.0%
TGTTTGCATAAAGGAAGAAG+AGG + chr8.1:73647567-73647586 MS.gene59610:CDS 35.0%
TTGTAAACTTAGCCTAGAAG+GGG + chr8.1:73647129-73647148 MS.gene59610:CDS 35.0%
TTTACACCGTCCATATTCAT+AGG + chr8.1:73646681-73646700 MS.gene59610:CDS 35.0%
TTTATCTCTATGTGGTTGCA+CGG + chr8.1:73646733-73646752 MS.gene59610:CDS 35.0%
TTTCAAAGATAAGCAAGCAG+TGG - chr8.1:73646945-73646964 None:intergenic 35.0%
! AATTTTGGATATGGAGCCAT+CGG - chr8.1:73646583-73646602 None:intergenic 35.0%
! CTCTCCATTTTGTACTTGAA+TGG + chr8.1:73647490-73647509 MS.gene59610:CDS 35.0%
! GACGGTTGAAATTTTGGATA+TGG - chr8.1:73646592-73646611 None:intergenic 35.0%
!! TTCGGAAGTTTAGGATTTTG+AGG - chr8.1:73647258-73647277 None:intergenic 35.0%
AAGAGCTTTCAACCCTTTGT+CGG - chr8.1:73646999-73647018 None:intergenic 40.0%
ATGAGGTGAGTATATCTGGA+TGG + chr8.1:73647362-73647381 MS.gene59610:CDS 40.0%
CATGCAGTCTCTTCAAATTC+TGG - chr8.1:73647408-73647427 None:intergenic 40.0%
CCTTAGCAGACAAAGAAGAA+GGG - chr8.1:73646652-73646671 None:intergenic 40.0%
CCTTCTTCTTTGTCTGCTAA+GGG + chr8.1:73646650-73646669 MS.gene59610:CDS 40.0%
GAGTCTTGAAAAGGTTGACA+TGG + chr8.1:73646439-73646458 MS.gene59610:CDS 40.0%
GAGTTATTCAAGTCTCACAG+GGG + chr8.1:73647541-73647560 MS.gene59610:CDS 40.0%
GCCTTAGCAACCTATGAATA+TGG - chr8.1:73646694-73646713 None:intergenic 40.0%
GCTCACAAATATCCGACAAA+GGG + chr8.1:73646984-73647003 MS.gene59610:CDS 40.0%
GGCCATTATCAGTAAGATTG+AGG - chr8.1:73647441-73647460 None:intergenic 40.0%
TGCTCACAAATATCCGACAA+AGG + chr8.1:73646983-73647002 MS.gene59610:CDS 40.0%
TGTCATGAGGTGAGTATATC+TGG + chr8.1:73647358-73647377 MS.gene59610:CDS 40.0%
TTCAAGTAGTGTACATCCCT+TGG - chr8.1:73647320-73647339 None:intergenic 40.0%
TTGAACCGTAGCTTAGCAAA+CGG - chr8.1:73646781-73646800 None:intergenic 40.0%
! ATAAGTGGTGTTGGATTCGA+AGG + chr8.1:73647070-73647089 MS.gene59610:CDS 40.0%
! CGTACTGATCGTGAATCATT+TGG + chr8.1:73646545-73646564 MS.gene59610:CDS 40.0%
! TAAGTGGTGTTGGATTCGAA+GGG + chr8.1:73647071-73647090 MS.gene59610:CDS 40.0%
!! ATCTTACTGATAATGGCCTG+CGG + chr8.1:73647443-73647462 MS.gene59610:CDS 40.0%
!! TTGCTTAAGTTGGTCACCAT+CGG + chr8.1:73647198-73647217 MS.gene59610:CDS 40.0%
!!! GTTTAGGATTTTGAGGCTTG+AGG - chr8.1:73647251-73647270 None:intergenic 40.0%
ACTCAAATTGCAGAGTCCGA+CGG - chr8.1:73646610-73646629 None:intergenic 45.0%
AGGAAAATCCTATTCCACGC+AGG - chr8.1:73647231-73647250 None:intergenic 45.0%
ATATCTGGATGGCAAGCAGT+GGG + chr8.1:73647373-73647392 MS.gene59610:CDS 45.0%
ATTTGGTAAGTGCACGATGG+AGG - chr8.1:73646489-73646508 None:intergenic 45.0%
CAAATCTCTCGTGCATGTAG+AGG + chr8.1:73647099-73647118 MS.gene59610:CDS 45.0%
CCCTTAGCAGACAAAGAAGA+AGG - chr8.1:73646653-73646672 None:intergenic 45.0%
CCCTTCTTCTTTGTCTGCTA+AGG + chr8.1:73646649-73646668 MS.gene59610:CDS 45.0%
CTCTACATGCACGAGAGATT+TGG - chr8.1:73647101-73647120 None:intergenic 45.0%
GAAAATCCTATTCCACGCAG+GGG - chr8.1:73647229-73647248 None:intergenic 45.0%
GGAAAATCCTATTCCACGCA+GGG - chr8.1:73647230-73647249 None:intergenic 45.0%
GGTTGAAAGCTCTTACTCAG+CGG + chr8.1:73647005-73647024 MS.gene59610:CDS 45.0%
GTCATTTGGTAAGTGCACGA+TGG - chr8.1:73646492-73646511 None:intergenic 45.0%
TAAACTTAGCCTAGAAGGGG+TGG + chr8.1:73647132-73647151 MS.gene59610:CDS 45.0%
TATATCTGGATGGCAAGCAG+TGG + chr8.1:73647372-73647391 MS.gene59610:CDS 45.0%
TCACACTGTGAGCGTATAAG+TGG + chr8.1:73647055-73647074 MS.gene59610:CDS 45.0%
TGAACCGTAGCTTAGCAAAC+GGG - chr8.1:73646780-73646799 None:intergenic 45.0%
TGTGAGCGTATAAGTGGTGT+TGG + chr8.1:73647061-73647080 MS.gene59610:CDS 45.0%
! CTAACCCGTTTGCTAAGCTA+CGG + chr8.1:73646773-73646792 MS.gene59610:CDS 45.0%
! GAGTCCGACGGTTGAAATTT+TGG - chr8.1:73646598-73646617 None:intergenic 45.0%
!! TCTTACTGATAATGGCCTGC+GGG + chr8.1:73647444-73647463 MS.gene59610:CDS 45.0%
!! TGCTTAAGTTGGTCACCATC+GGG + chr8.1:73647199-73647218 MS.gene59610:CDS 45.0%
AGGGACAACCAGAAGCAACT+AGG - chr8.1:73646859-73646878 None:intergenic 50.0%
CAGGGGCGATGTTTGCATAA+AGG + chr8.1:73647558-73647577 MS.gene59610:CDS 50.0%
GATGGAGGTAGCACCAAGTT+TGG - chr8.1:73646474-73646493 None:intergenic 50.0%
GGGACAACCAGAAGCAACTA+GGG - chr8.1:73646858-73646877 None:intergenic 50.0%
TATCTGGATGGCAAGCAGTG+GGG + chr8.1:73647374-73647393 MS.gene59610:CDS 50.0%
CAATTCCGACCACCCCTTCT+AGG - chr8.1:73647144-73647163 None:intergenic 55.0%
CTTAGCCTAGAAGGGGTGGT+CGG + chr8.1:73647136-73647155 MS.gene59610:CDS 55.0%
GGGCTATCCCTAGTTGCTTC+TGG + chr8.1:73646848-73646867 MS.gene59610:CDS 55.0%
GGGGTGGTCGGAATTGTTAG+CGG + chr8.1:73647148-73647167 MS.gene59610:CDS 55.0%
GTCGGAATTGTTAGCGGTGG+CGG + chr8.1:73647154-73647173 MS.gene59610:CDS 55.0%
GTGGTCGGAATTGTTAGCGG+TGG + chr8.1:73647151-73647170 MS.gene59610:CDS 55.0%
TGCACGGAGCTCGATGATTC+AGG + chr8.1:73646749-73646768 MS.gene59610:CDS 55.0%
!! TTGGCTTGACTTGCAGCCGA+TGG + chr8.1:73646564-73646583 MS.gene59610:CDS 55.0%
AACCGTCTCGTAATGCCCGC+AGG - chr8.1:73647462-73647481 None:intergenic 60.0%
GGAGATCCCCTGCGTGGAAT+AGG + chr8.1:73647220-73647239 MS.gene59610:CDS 60.0%
GGCCTGCGGGCATTACGAGA+CGG + chr8.1:73647457-73647476 MS.gene59610:CDS 65.0%
CCACGCAGGGGATCTCCCGA+TGG - chr8.1:73647217-73647236 None:intergenic 70.0%
CCATCGGGAGATCCCCTGCG+TGG + chr8.1:73647214-73647233 MS.gene59610:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 73646437 73647624 73646437 ID=MS.gene59610
chr8.1 mRNA 73646437 73647624 73646437 ID=MS.gene59610.t1;Parent=MS.gene59610
chr8.1 exon 73646437 73647624 73646437 ID=MS.gene59610.t1.exon1;Parent=MS.gene59610.t1
chr8.1 CDS 73646437 73647624 73646437 ID=cds.MS.gene59610.t1;Parent=MS.gene59610.t1
Gene Sequence

>MS.gene59610

ATGAGTCTTGAAAAGGTTGACATGGAAGATCTTTCCAAACTTGGTGCTACCTCCATCGTGCACTTACCAAATGACTGCCTTACTATTATTTTTCATGGTTTAGATTGTCGTACTGATCGTGAATCATTTGGCTTGACTTGCAGCCGATGGCTCCATATCCAAAATTTCAACCGTCGGACTCTGCAATTTGAGTGTTCATTTAGTATATTAAACCCTTCTTCTTTGTCTGCTAAGGGTCTTGATGTTTACACCGTCCATATTCATAGGTTGCTAAGGCGCTTTCAACATTTAGAGTCTTTATCTCTATGTGGTTGCACGGAGCTCGATGATTCAGGACTAACCCGTTTGCTAAGCTACGGTTCAAATTTACAAAAACTTAATCTGGATTGTTGTTTGAAAGTCACTAACTACGGGCTATCCCTAGTTGCTTCTGGTTGTCCCTCATTGACAACAATTAGTCTCTATCGGTGTCTTAACATTACTGATGAAGGATTAGAGACTTTAACCACTGCTTGCTTATCTTTGAAATGCATAAACCTGTCATACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGCGGTGTCGCCAGCTTCAAGCTATTAACGTATCACACTGTGAGCGTATAAGTGGTGTTGGATTCGAAGGGTGTTCCAAATCTCTCGTGCATGTAGAGGCCGAGTCTTGTAAACTTAGCCTAGAAGGGGTGGTCGGAATTGTTAGCGGTGGCGGAATAGAGTATCTAGATGTATCTTGCTTAAGTTGGTCACCATCGGGAGATCCCCTGCGTGGAATAGGATTTTCCTCAAGCCTCAAAATCCTAAACTTCCGAATGTGTAGATCAGTTTCTGATGCTTCTATTATTGCAATAGCCAAGGGATGTACACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGAGTATATCTGGATGGCAAGCAGTGGGGCTATATTGCCAGAATTTGAAGAGACTGCATGTGAATAGATGCCTCAATCTTACTGATAATGGCCTGCGGGCATTACGAGACGGTTGCAAAAGTCTCTCCATTTTGTACTTGAATGGTTGTGCTCGAGTGACGCCTTTAGCATTAGAGTTATTCAAGTCTCACAGGGGCGATGTTTGCATAAAGGAAGAAGAGGTAATGTGCATAAAGCCTTACTCCCCATTCAGATGA
Protein sequence

>MS.gene59610.t1

MSLEKVDMEDLSKLGATSIVHLPNDCLTIIFHGLDCRTDRESFGLTCSRWLHIQNFNRRTLQFECSFSILNPSSLSAKGLDVYTVHIHRLLRRFQHLESLSLCGCTELDDSGLTRLLSYGSNLQKLNLDCCLKVTNYGLSLVASGCPSLTTISLYRCLNITDEGLETLTTACLSLKCINLSYCSQISDKGLKALTQRCRQLQAINVSHCERISGVGFEGCSKSLVHVEAESCKLSLEGVVGIVSGGGIEYLDVSCLSWSPSGDPLRGIGFSSSLKILNFRMCRSVSDASIIAIAKGCTLLEEWNLALCHEVSISGWQAVGLYCQNLKRLHVNRCLNLTDNGLRALRDGCKSLSILYLNGCARVTPLALELFKSHRGDVCIKEEEVMCIKPYSPFR