Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042962.t1 | KEH27104.1 | 93.4 | 411 | 23 | 1 | 1 | 411 | 1 | 407 | 1.20E-226 | 795.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042962.t1 | P14749 | 76.6 | 368 | 86 | 0 | 42 | 409 | 43 | 410 | 2.0e-172 | 606.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042962.t1 | A0A072UBB6 | 93.4 | 411 | 23 | 1 | 1 | 411 | 1 | 407 | 8.9e-227 | 795.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06516 | MS.gene042962 | PPI |
| MS.gene059347 | MS.gene042962 | PPI |
| MS.gene87685 | MS.gene042962 | PPI |
| MS.gene042962 | MS.gene013419 | PPI |
| MS.gene036941 | MS.gene042962 | PPI |
| MS.gene036942 | MS.gene042962 | PPI |
| MS.gene27500 | MS.gene042962 | PPI |
| MS.gene042962 | MS.gene049391 | PPI |
| MS.gene27501 | MS.gene042962 | PPI |
| MS.gene042962 | MS.gene92764 | PPI |
| MS.gene87684 | MS.gene042962 | PPI |
| MS.gene92763 | MS.gene042962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042962.t1 | MTR_6g086625 | 93.674 | 411 | 23 | 1 | 1 | 411 | 1 | 408 | 0.0 | 791 |
| MS.gene042962.t1 | MTR_6g086575 | 93.431 | 411 | 23 | 1 | 1 | 411 | 1 | 407 | 0.0 | 790 |
| MS.gene042962.t1 | MTR_1g077480 | 88.889 | 414 | 43 | 1 | 1 | 411 | 1 | 414 | 0.0 | 757 |
| MS.gene042962.t1 | MTR_1g077520 | 78.378 | 407 | 86 | 2 | 2 | 408 | 3 | 407 | 0.0 | 674 |
| MS.gene042962.t1 | MTR_6g069140 | 75.969 | 387 | 91 | 1 | 24 | 408 | 33 | 419 | 0.0 | 626 |
| MS.gene042962.t1 | MTR_1g077520 | 77.844 | 334 | 72 | 2 | 2 | 335 | 3 | 334 | 0.0 | 553 |
| MS.gene042962.t1 | MTR_7g073640 | 59.852 | 406 | 154 | 3 | 5 | 408 | 9 | 407 | 0.0 | 511 |
| MS.gene042962.t1 | MTR_7g073650 | 63.957 | 369 | 131 | 2 | 42 | 408 | 38 | 406 | 0.0 | 510 |
| MS.gene042962.t1 | MTR_3g094160 | 62.264 | 371 | 135 | 3 | 45 | 411 | 59 | 428 | 8.87e-176 | 498 |
| MS.gene042962.t1 | MTR_1g078410 | 59.565 | 230 | 38 | 3 | 1 | 227 | 1 | 178 | 3.02e-82 | 250 |
| MS.gene042962.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 288 | 408 | 101 | 223 | 1.19e-37 | 136 |
| MS.gene042962.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 288 | 408 | 185 | 307 | 1.41e-36 | 135 |
| MS.gene042962.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 288 | 408 | 250 | 372 | 6.81e-36 | 135 |
| MS.gene042962.t1 | MTR_8g089725 | 25.097 | 518 | 257 | 19 | 7 | 409 | 4 | 505 | 1.57e-27 | 114 |
| MS.gene042962.t1 | MTR_8g089735 | 24.903 | 518 | 258 | 19 | 7 | 409 | 4 | 505 | 1.07e-26 | 112 |
| MS.gene042962.t1 | MTR_3g086580 | 25.500 | 400 | 194 | 14 | 8 | 316 | 3 | 389 | 3.63e-22 | 99.4 |
| MS.gene042962.t1 | MTR_2g096530 | 27.221 | 349 | 164 | 12 | 55 | 316 | 40 | 385 | 9.32e-22 | 98.2 |
| MS.gene042962.t1 | MTR_8g089745 | 25.505 | 396 | 194 | 14 | 7 | 317 | 4 | 383 | 1.31e-21 | 97.1 |
| MS.gene042962.t1 | MTR_8g089745 | 25.505 | 396 | 194 | 14 | 7 | 317 | 4 | 383 | 3.14e-21 | 96.3 |
| MS.gene042962.t1 | MTR_8g089740 | 25.316 | 395 | 193 | 15 | 9 | 317 | 1 | 379 | 6.99e-20 | 92.4 |
| MS.gene042962.t1 | MTR_3g086580 | 29.609 | 179 | 97 | 6 | 165 | 316 | 26 | 202 | 1.83e-13 | 72.0 |
| MS.gene042962.t1 | MTR_3g094180 | 47.945 | 73 | 32 | 2 | 321 | 387 | 7 | 79 | 3.53e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042962.t1 | AT5G08370 | 71.164 | 378 | 108 | 1 | 35 | 411 | 19 | 396 | 0.0 | 588 |
| MS.gene042962.t1 | AT5G08370 | 72.404 | 366 | 101 | 0 | 46 | 411 | 5 | 370 | 0.0 | 583 |
| MS.gene042962.t1 | AT5G08380 | 59.951 | 407 | 160 | 2 | 3 | 408 | 4 | 408 | 0.0 | 515 |
| MS.gene042962.t1 | AT3G56310 | 58.768 | 422 | 158 | 6 | 2 | 409 | 11 | 430 | 7.32e-179 | 506 |
| MS.gene042962.t1 | AT3G56310 | 55.213 | 422 | 149 | 7 | 2 | 409 | 11 | 406 | 3.46e-160 | 457 |
| MS.gene042962.t1 | AT5G08380 | 61.587 | 315 | 119 | 1 | 3 | 317 | 4 | 316 | 8.93e-145 | 414 |
| MS.gene042962.t1 | AT3G26380 | 25.501 | 349 | 170 | 12 | 55 | 316 | 42 | 387 | 1.40e-20 | 94.0 |
| MS.gene042962.t1 | AT3G26380 | 25.501 | 349 | 170 | 12 | 55 | 316 | 42 | 387 | 3.36e-20 | 93.2 |
Find 96 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTGATGCAAGAGATTTA+TGG | 0.246206 | 6.4:-59884046 | MS.gene042962:CDS |
| ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 6.4:-59885659 | MS.gene042962:CDS |
| TCAACACTATCATTGGTTTC+GGG | 0.266635 | 6.4:-59883929 | MS.gene042962:CDS |
| ACAAAGTAGCAGTGGTCTTA+TGG | 0.274504 | 6.4:-59884136 | MS.gene042962:CDS |
| ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 6.4:-59884752 | MS.gene042962:CDS |
| GGGTACAAGTATATCAATTT+AGG | 0.295779 | 6.4:-59886335 | MS.gene042962:intron |
| TGCCAAAACATTTGCTTCTT+GGG | 0.296895 | 6.4:-59885658 | MS.gene042962:intron |
| TTAAAGATGTTAGGGAAATA+TGG | 0.303082 | 6.4:-59885911 | MS.gene042962:intron |
| TTTCCAACTTCGAGCATATC+AGG | 0.305679 | 6.4:+59884798 | None:intergenic |
| CTCAACACTATCATTGGTTT+CGG | 0.310793 | 6.4:-59883930 | MS.gene042962:CDS |
| AAGAGTTATATGTTGCAAAA+TGG | 0.314815 | 6.4:-59886760 | MS.gene042962:CDS |
| ATATTACAACCAACTAATAA+AGG | 0.326535 | 6.4:+59884623 | None:intergenic |
| TTTAATAAGGCTTCACTCAT+TGG | 0.330793 | 6.4:+59885351 | None:intergenic |
| TAGAGTAATGGTTAGATATA+TGG | 0.345694 | 6.4:-59886893 | None:intergenic |
| CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 6.4:+59884745 | None:intergenic |
| AGTTGATGCAAGAGATTTAT+GGG | 0.361924 | 6.4:-59884045 | MS.gene042962:CDS |
| TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 6.4:-59884751 | MS.gene042962:CDS |
| TACCCAAGAAGCAAATGTTT+TGG | 0.367399 | 6.4:+59885656 | None:intergenic |
| TAATAGATGTAAACGACAAA+TGG | 0.370517 | 6.4:-59884966 | MS.gene042962:CDS |
| TATGATAACTGTCACAATAA+TGG | 0.370763 | 6.4:-59885507 | MS.gene042962:CDS |
| TGGAATAGTTGGAACCATTT+CGG | 0.374598 | 6.4:-59886534 | MS.gene042962:CDS |
| CAAAAGCTACAATGATTTAG+AGG | 0.376061 | 6.4:-59884421 | MS.gene042962:intron |
| TATTACAACCAACTAATAAA+GGG | 0.382437 | 6.4:+59884624 | None:intergenic |
| TGATGTTCAGATGGAATAGT+TGG | 0.389098 | 6.4:-59886545 | MS.gene042962:intron |
| GTAGATAAACTTGGAGTTCA+AGG | 0.392836 | 6.4:-59884453 | MS.gene042962:intron |
| CAGGAGATATTAAAGATAAC+TGG | 0.394203 | 6.4:-59885152 | MS.gene042962:CDS |
| AGTGAAGCCTTATTAAAATC+TGG | 0.394521 | 6.4:-59885345 | MS.gene042962:CDS |
| CATATAACTCTTAATCTTAG+TGG | 0.397865 | 6.4:+59886771 | None:intergenic |
| TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 6.4:+59885885 | None:intergenic |
| AAATAGGCCCCTTTATTAGT+TGG | 0.402531 | 6.4:-59884632 | MS.gene042962:intron |
| CATTGATATTGCAACCGAAA+TGG | 0.410209 | 6.4:+59886520 | None:intergenic |
| GCAGCACTCAACACTATCAT+TGG | 0.412913 | 6.4:-59883936 | MS.gene042962:intron |
| TCAACTGGCCTTGCTGCCCT+AGG | 0.416149 | 6.4:-59886356 | MS.gene042962:CDS |
| CACATGAAAGGCTTGAAGTT+GGG | 0.419189 | 6.4:-59885835 | MS.gene042962:CDS |
| GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 6.4:-59886498 | MS.gene042962:intron |
| TAAACGTATGCCTGGATCAC+TGG | 0.433474 | 6.4:-59885697 | MS.gene042962:CDS |
| CTTAATCTTAGTGGACACTT+TGG | 0.449951 | 6.4:+59886780 | None:intergenic |
| ATTTCATGTCCCAGTGATCC+AGG | 0.452806 | 6.4:+59885687 | None:intergenic |
| GGAAATAGTTGGAGAACAAC+AGG | 0.462081 | 6.4:-59885171 | MS.gene042962:CDS |
| TTGGGAATCTATTCAGATGC+TGG | 0.462560 | 6.4:-59885817 | MS.gene042962:CDS |
| GACAAATGGGCATCTTATGC+TGG | 0.464580 | 6.4:-59884952 | MS.gene042962:CDS |
| GCTGATGCGATGGTGTCAAC+TGG | 0.466489 | 6.4:-59886371 | MS.gene042962:CDS |
| GATATGCTCGAAGTTGGAAA+TGG | 0.467367 | 6.4:-59884795 | MS.gene042962:CDS |
| TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 6.4:+59884746 | None:intergenic |
| AATAGATGTAAACGACAAAT+GGG | 0.481120 | 6.4:-59884965 | MS.gene042962:CDS |
| CAGCATTTGGGCATTAGCTA+AGG | 0.486215 | 6.4:-59884739 | MS.gene042962:intron |
| TCACATGAAAGGCTTGAAGT+TGG | 0.489584 | 6.4:-59885836 | MS.gene042962:CDS |
| TGTGGTATTGTAGATAAACT+TGG | 0.489705 | 6.4:-59884462 | MS.gene042962:intron |
| AATTGATATACTTGTACCCT+AGG | 0.490789 | 6.4:+59886339 | None:intergenic |
| TCTTCTTCTCTATGTGTGAA+TGG | 0.495440 | 6.4:-59885314 | MS.gene042962:intron |
| AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 6.4:-59885883 | MS.gene042962:CDS |
| ACTTGTAGTAAACGTATGCC+TGG | 0.499229 | 6.4:-59885705 | MS.gene042962:CDS |
| GATCCTGATATGCTCGAAGT+TGG | 0.500070 | 6.4:-59884801 | MS.gene042962:CDS |
| GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 6.4:+59885886 | None:intergenic |
| ATGGTATAAGTGTTAGAGAA+AGG | 0.512588 | 6.4:-59885488 | MS.gene042962:intron |
| ATGCAACAGTAACTGCATCT+TGG | 0.514796 | 6.4:-59884097 | MS.gene042962:CDS |
| AATAAGGCTTCACTCATTGG+TGG | 0.521866 | 6.4:+59885354 | None:intergenic |
| TAATTACCATTCCATCCTCC+AGG | 0.523855 | 6.4:+59884928 | None:intergenic |
| AAGCGAGCAGCTGAAGATGA+TGG | 0.525330 | 6.4:+59886823 | None:intergenic |
| TATATGTTGCAAAATGGACT+TGG | 0.531723 | 6.4:-59886754 | MS.gene042962:CDS |
| CAACTGGCCTTGCTGCCCTA+GGG | 0.535222 | 6.4:-59886355 | MS.gene042962:CDS |
| GAAAGGAAGATCCAGCAACA+TGG | 0.542444 | 6.4:-59885206 | MS.gene042962:CDS |
| CTTATGCTGGACCTGGAGGA+TGG | 0.545149 | 6.4:-59884939 | MS.gene042962:CDS |
| TGGGCATCTTATGCTGGACC+TGG | 0.550800 | 6.4:-59884946 | MS.gene042962:CDS |
| GCTACTTTGTTATTAGTGAG+AGG | 0.550815 | 6.4:+59884149 | None:intergenic |
| GCTCATTATATTCACATGAA+AGG | 0.552415 | 6.4:-59885847 | MS.gene042962:CDS |
| CTATGGAGATAGGTGTGGGC+AGG | 0.555854 | 6.4:-59884173 | MS.gene042962:intron |
| TGGTTGTAATATTCAAGCAA+TGG | 0.558395 | 6.4:-59884612 | MS.gene042962:CDS |
| AAACATAGATACCTGTATCT+CGG | 0.568820 | 6.4:+59886487 | None:intergenic |
| TGGGAATCTATTCAGATGCT+GGG | 0.568871 | 6.4:-59885816 | MS.gene042962:intron |
| TATCATTTCAGCTGATGCGA+TGG | 0.569529 | 6.4:-59886381 | MS.gene042962:intron |
| AAACGTATGCCTGGATCACT+GGG | 0.570234 | 6.4:-59885696 | MS.gene042962:CDS |
| ACTGCATCTTGGTCAGACAT+AGG | 0.575528 | 6.4:-59884086 | MS.gene042962:CDS |
| CAACACTATCATTGGTTTCG+GGG | 0.576577 | 6.4:-59883928 | MS.gene042962:CDS |
| GGAACTTAATCGAGACTCAC+AGG | 0.580260 | 6.4:-59886093 | MS.gene042962:intron |
| TTAGGGAAATATGGTTCCCA+AGG | 0.580295 | 6.4:-59885902 | MS.gene042962:intron |
| CACTAATAACAAAGTAGCAG+TGG | 0.589537 | 6.4:-59884144 | MS.gene042962:CDS |
| AAAGGAAGATCCAGCAACAT+GGG | 0.591497 | 6.4:-59885205 | MS.gene042962:CDS |
| GCTAGAAGCTTGATTCCTGA+AGG | 0.597203 | 6.4:+59885868 | None:intergenic |
| AACACTATCATTGGTTTCGG+GGG | 0.597511 | 6.4:-59883927 | MS.gene042962:CDS |
| GCTGGACCTGGAGGATGGAA+TGG | 0.600529 | 6.4:-59884934 | MS.gene042962:intron |
| ATGCTCGAAGTTGGAAATGG+AGG | 0.603679 | 6.4:-59884792 | MS.gene042962:CDS |
| AAGCCTTATTAAAATCTGGA+AGG | 0.610362 | 6.4:-59885341 | MS.gene042962:CDS |
| ATTACAACCAACTAATAAAG+GGG | 0.610550 | 6.4:+59884625 | None:intergenic |
| GATGGTATAGCATACCCCAT+GGG | 0.612388 | 6.4:+59886721 | None:intergenic |
| ATATTAAAGATAACTGGCAT+CGG | 0.619640 | 6.4:-59885146 | MS.gene042962:intron |
| ACTTGTACCCTAGGGCAGCA+AGG | 0.626170 | 6.4:+59886348 | None:intergenic |
| GAAGTTATTGCAGTAAACCA+AGG | 0.635887 | 6.4:-59884557 | MS.gene042962:intron |
| ATTGATATACTTGTACCCTA+GGG | 0.641607 | 6.4:+59886340 | None:intergenic |
| ATGGTATAGCATACCCCATG+GGG | 0.644504 | 6.4:+59886722 | None:intergenic |
| GCATCTTATGCTGGACCTGG+AGG | 0.645529 | 6.4:-59884943 | MS.gene042962:CDS |
| CAATAATATTCAGCAACACG+AGG | 0.675415 | 6.4:+59886854 | None:intergenic |
| AAATGGAGGCATGACAACAG+AGG | 0.691145 | 6.4:-59884778 | MS.gene042962:CDS |
| TGGTATAGCATACCCCATGG+GGG | 0.692128 | 6.4:+59886723 | None:intergenic |
| TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 6.4:-59884042 | MS.gene042962:intron |
| GGTATAGCATACCCCATGGG+GGG | 0.727686 | 6.4:+59886724 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAACATACAAATTAA+TGG | + | chr6.4:59884712-59884731 | None:intergenic | 10.0% |
| !! | AGAAAAATTTGAATCAATAT+TGG | + | chr6.4:59885199-59885218 | None:intergenic | 15.0% |
| !! | AGAAAATGAAATATCAATTA+TGG | + | chr6.4:59885489-59885508 | None:intergenic | 15.0% |
| !! | CATCATAAATATAATTGATT+AGG | + | chr6.4:59884188-59884207 | None:intergenic | 15.0% |
| !! | GTATTAATTTCTTCAATAAA+GGG | - | chr6.4:59886240-59886259 | MS.gene042962:intron | 15.0% |
| !! | TATACTTTCATGAATTTAAT+TGG | + | chr6.4:59884159-59884178 | None:intergenic | 15.0% |
| !! | TGAAAAACAATAAATTCATA+TGG | - | chr6.4:59886765-59886784 | MS.gene042962:CDS | 15.0% |
| !! | TGTATTAATTTCTTCAATAA+AGG | - | chr6.4:59886239-59886258 | MS.gene042962:intron | 15.0% |
| !!! | ATTGATTCAAATTTTTCTTT+AGG | - | chr6.4:59885201-59885220 | MS.gene042962:CDS | 15.0% |
| !!! | GTTTTTTTAAACTATTTTAC+TGG | - | chr6.4:59886089-59886108 | MS.gene042962:intron | 15.0% |
| !!! | TTGATTCAAATTTTTCTTTA+GGG | - | chr6.4:59885202-59885221 | MS.gene042962:CDS | 15.0% |
| !! | AACAGCATAAGATTATAAAT+AGG | + | chr6.4:59885174-59885193 | None:intergenic | 20.0% |
| !! | AACTGTAAAAATAATAGCTT+AGG | + | chr6.4:59884308-59884327 | None:intergenic | 20.0% |
| !! | ACTGTAAAAATAATAGCTTA+GGG | + | chr6.4:59884307-59884326 | None:intergenic | 20.0% |
| !! | ACTTAAACACCATAAAATAA+AGG | + | chr6.4:59886370-59886389 | None:intergenic | 20.0% |
| !! | ACTTCTTACTAAAAATTCTA+TGG | - | chr6.4:59886558-59886577 | MS.gene042962:intron | 20.0% |
| !! | ATATTACAACCAACTAATAA+AGG | + | chr6.4:59886128-59886147 | None:intergenic | 20.0% |
| !! | ATCTAATATCCAAACATTAA+TGG | + | chr6.4:59885930-59885949 | None:intergenic | 20.0% |
| !! | ATGACAAATATAGATAAAGA+TGG | + | chr6.4:59884048-59884067 | None:intergenic | 20.0% |
| !! | CACATATGAGAAATAAATAT+TGG | + | chr6.4:59885907-59885926 | None:intergenic | 20.0% |
| !! | CTTAAACACCATAAAATAAA+GGG | + | chr6.4:59886369-59886388 | None:intergenic | 20.0% |
| !! | GAATCATAAAAGGAAAAAAA+TGG | + | chr6.4:59884109-59884128 | None:intergenic | 20.0% |
| !! | TATTACAACCAACTAATAAA+GGG | + | chr6.4:59886127-59886146 | None:intergenic | 20.0% |
| !! | TTATATTTATGATGTTCAGA+TGG | - | chr6.4:59884194-59884213 | MS.gene042962:intron | 20.0% |
| !!! | AATTGCTTTTTTGAAACATA+GGG | - | chr6.4:59885519-59885538 | MS.gene042962:CDS | 20.0% |
| !!! | ATAAATTCATATGGTTTTGA+TGG | - | chr6.4:59886774-59886793 | MS.gene042962:CDS | 20.0% |
| !!! | CTATTTTACTGGATTTAAAT+AGG | - | chr6.4:59886100-59886119 | MS.gene042962:CDS | 20.0% |
| !!! | TAATTGCTTTTTTGAAACAT+AGG | - | chr6.4:59885518-59885537 | MS.gene042962:CDS | 20.0% |
| !!! | TTTTCTTTCCCTTTATTTTA+TGG | - | chr6.4:59886358-59886377 | MS.gene042962:CDS | 20.0% |
| !!! | TTTTTTTTCAGATGATTGTT+GGG | - | chr6.4:59884631-59884650 | MS.gene042962:intron | 20.0% |
| ! | AAATTAGTTGGTCATGATAT+AGG | + | chr6.4:59885737-59885756 | None:intergenic | 25.0% |
| ! | AAGAGTTATATGTTGCAAAA+TGG | - | chr6.4:59883988-59884007 | MS.gene042962:intron | 25.0% |
| ! | AATAGATGTAAACGACAAAT+GGG | - | chr6.4:59885783-59885802 | MS.gene042962:intron | 25.0% |
| ! | ACAAGTATATCAATTTAGGT+AGG | - | chr6.4:59884417-59884436 | MS.gene042962:intron | 25.0% |
| ! | ACTAAAAATTCTATGGAGAT+AGG | - | chr6.4:59886565-59886584 | MS.gene042962:intron | 25.0% |
| ! | ATATTAAAGATAACTGGCAT+CGG | - | chr6.4:59885602-59885621 | MS.gene042962:intron | 25.0% |
| ! | ATTACAACCAACTAATAAAG+GGG | + | chr6.4:59886126-59886145 | None:intergenic | 25.0% |
| ! | CATATAACTCTTAATCTTAG+TGG | + | chr6.4:59883980-59883999 | None:intergenic | 25.0% |
| ! | CTTTATGTGTGAATCATAAA+AGG | + | chr6.4:59884119-59884138 | None:intergenic | 25.0% |
| ! | TAATAGATGTAAACGACAAA+TGG | - | chr6.4:59885782-59885801 | MS.gene042962:intron | 25.0% |
| ! | TATGATAACTGTCACAATAA+TGG | - | chr6.4:59885241-59885260 | MS.gene042962:intron | 25.0% |
| ! | TATGTTCTTCAAATGCAAAT+AGG | - | chr6.4:59885292-59885311 | MS.gene042962:intron | 25.0% |
| ! | TATTACTTTGTCTCAACAAT+AGG | + | chr6.4:59886057-59886076 | None:intergenic | 25.0% |
| ! | TTAAAGATGTTAGGGAAATA+TGG | - | chr6.4:59884837-59884856 | MS.gene042962:intron | 25.0% |
| ! | TTAACTTTCAACTCAAAACA+TGG | - | chr6.4:59886426-59886445 | MS.gene042962:intron | 25.0% |
| !!! | ATTGCTTTTTTGAAACATAG+GGG | - | chr6.4:59885520-59885539 | MS.gene042962:CDS | 25.0% |
| !!! | GTTTTTTTTCAGATGATTGT+TGG | - | chr6.4:59884630-59884649 | MS.gene042962:intron | 25.0% |
| AAAAGAGACATCGTATAATG+TGG | + | chr6.4:59885654-59885673 | None:intergenic | 30.0% | |
| AAACATAGATACCTGTATCT+CGG | + | chr6.4:59884264-59884283 | None:intergenic | 30.0% | |
| AAAGAGACATCGTATAATGT+GGG | + | chr6.4:59885653-59885672 | None:intergenic | 30.0% | |
| AATTGATATACTTGTACCCT+AGG | + | chr6.4:59884412-59884431 | None:intergenic | 30.0% | |
| AGTATATCAATTTAGGTAGG+TGG | - | chr6.4:59884420-59884439 | MS.gene042962:intron | 30.0% | |
| ATCTATTATAGAAGTCATGC+TGG | + | chr6.4:59885770-59885789 | None:intergenic | 30.0% | |
| ATGGTATAAGTGTTAGAGAA+AGG | - | chr6.4:59885260-59885279 | MS.gene042962:intron | 30.0% | |
| ATTGATATACTTGTACCCTA+GGG | + | chr6.4:59884411-59884430 | None:intergenic | 30.0% | |
| CAAAAGCTACAATGATTTAG+AGG | - | chr6.4:59886327-59886346 | MS.gene042962:intron | 30.0% | |
| CAGGAGATATTAAAGATAAC+TGG | - | chr6.4:59885596-59885615 | MS.gene042962:intron | 30.0% | |
| CTGACAAGTTAAAGATGTTA+GGG | - | chr6.4:59884829-59884848 | MS.gene042962:intron | 30.0% | |
| GCTCATTATATTCACATGAA+AGG | - | chr6.4:59884901-59884920 | MS.gene042962:intron | 30.0% | |
| GGGGATGAAATAAAATTAGT+TGG | + | chr6.4:59885749-59885768 | None:intergenic | 30.0% | |
| GGGTACAAGTATATCAATTT+AGG | - | chr6.4:59884413-59884432 | MS.gene042962:intron | 30.0% | |
| TCTATTATAGAAGTCATGCT+GGG | + | chr6.4:59885769-59885788 | None:intergenic | 30.0% | |
| TGGTTGTAATATTCAAGCAA+TGG | - | chr6.4:59886136-59886155 | MS.gene042962:intron | 30.0% | |
| TGTGGTATTGTAGATAAACT+TGG | - | chr6.4:59886286-59886305 | MS.gene042962:intron | 30.0% | |
| TTTAATAAGGCTTCACTCAT+TGG | + | chr6.4:59885400-59885419 | None:intergenic | 30.0% | |
| TTTCATACGTTGTGTAAATC+AGG | - | chr6.4:59885368-59885387 | MS.gene042962:intron | 30.0% | |
| ! | AGTTGATGCAAGAGATTTAT+GGG | - | chr6.4:59886703-59886722 | MS.gene042962:intron | 30.0% |
| ! | TAGTTGATGCAAGAGATTTA+TGG | - | chr6.4:59886702-59886721 | MS.gene042962:intron | 30.0% |
| ! | TATATGTTGCAAAATGGACT+TGG | - | chr6.4:59883994-59884013 | MS.gene042962:intron | 30.0% |
| ! | TCATATGTGCCATTAATGTT+TGG | - | chr6.4:59885918-59885937 | MS.gene042962:intron | 30.0% |
| !! | AAGCCTTATTAAAATCTGGA+AGG | - | chr6.4:59885407-59885426 | MS.gene042962:intron | 30.0% |
| !! | AGTGAAGCCTTATTAAAATC+TGG | - | chr6.4:59885403-59885422 | MS.gene042962:intron | 30.0% |
| !! | CATTAGTTTGCATTTATCGT+AGG | + | chr6.4:59886463-59886482 | None:intergenic | 30.0% |
| !! | CTAACATCTTTAACTTGTCA+GGG | + | chr6.4:59884830-59884849 | None:intergenic | 30.0% |
| !! | TAACATCTTTAACTTGTCAG+GGG | + | chr6.4:59884829-59884848 | None:intergenic | 30.0% |
| !! | TGACCTTCCAGATTTTAATA+AGG | + | chr6.4:59885413-59885432 | None:intergenic | 30.0% |
| !!! | TTTTTTGAAACATAGGGGAA+AGG | - | chr6.4:59885525-59885544 | MS.gene042962:CDS | 30.0% |
| AAATAGGCCCCTTTATTAGT+TGG | - | chr6.4:59886116-59886135 | MS.gene042962:intron | 35.0% | |
| AAATTCTATGGAGATAGGTG+TGG | - | chr6.4:59886570-59886589 | MS.gene042962:intron | 35.0% | |
| AATTCTATGGAGATAGGTGT+GGG | - | chr6.4:59886571-59886590 | MS.gene042962:intron | 35.0% | |
| ATGCCAAAACATTTGCTTCT+TGG | - | chr6.4:59885089-59885108 | MS.gene042962:intron | 35.0% | |
| CAATAATATTCAGCAACACG+AGG | + | chr6.4:59883897-59883916 | None:intergenic | 35.0% | |
| CACTAATAACAAAGTAGCAG+TGG | - | chr6.4:59886604-59886623 | MS.gene042962:intron | 35.0% | |
| CATGCATAACATTACTAGTG+AGG | + | chr6.4:59885851-59885870 | None:intergenic | 35.0% | |
| CATTGATATTGCAACCGAAA+TGG | + | chr6.4:59884231-59884250 | None:intergenic | 35.0% | |
| CCAAAAATGTGGGAAATAGT+TGG | - | chr6.4:59885566-59885585 | MS.gene042962:intron | 35.0% | |
| CCTGACAAGTTAAAGATGTT+AGG | - | chr6.4:59884828-59884847 | MS.gene042962:intron | 35.0% | |
| CTATTATAGAAGTCATGCTG+GGG | + | chr6.4:59885768-59885787 | None:intergenic | 35.0% | |
| GAAAGTTTAATCCGAGATAC+AGG | - | chr6.4:59884250-59884269 | MS.gene042962:intron | 35.0% | |
| GAAGTTATTGCAGTAAACCA+AGG | - | chr6.4:59886191-59886210 | MS.gene042962:intron | 35.0% | |
| GTAGATAAACTTGGAGTTCA+AGG | - | chr6.4:59886295-59886314 | MS.gene042962:intron | 35.0% | |
| TAATGCCCAAATGCTGAAAT+GGG | + | chr6.4:59886005-59886024 | None:intergenic | 35.0% | |
| TCAAGAAAGTCTACTTACCT+TGG | + | chr6.4:59886211-59886230 | None:intergenic | 35.0% | |
| TCTTCTTCTCTATGTGTGAA+TGG | - | chr6.4:59885434-59885453 | MS.gene042962:intron | 35.0% | |
| TGATGTTCAGATGGAATAGT+TGG | - | chr6.4:59884203-59884222 | MS.gene042962:intron | 35.0% | |
| TGCCAAAACATTTGCTTCTT+GGG | - | chr6.4:59885090-59885109 | MS.gene042962:intron | 35.0% | |
| TGGAATAGTTGGAACCATTT+CGG | - | chr6.4:59884214-59884233 | MS.gene042962:intron | 35.0% | |
| TTCAACTCAAAACATGGATC+TGG | - | chr6.4:59886432-59886451 | MS.gene042962:intron | 35.0% | |
| ! | CCAACTATTTCCCACATTTT+TGG | + | chr6.4:59885569-59885588 | None:intergenic | 35.0% |
| ! | CTTAATCTTAGTGGACACTT+TGG | + | chr6.4:59883971-59883990 | None:intergenic | 35.0% |
| ! | TACCCAAGAAGCAAATGTTT+TGG | + | chr6.4:59885095-59885114 | None:intergenic | 35.0% |
| !! | CCTAACATCTTTAACTTGTC+AGG | + | chr6.4:59884831-59884850 | None:intergenic | 35.0% |
| !! | CTCAACACTATCATTGGTTT+CGG | - | chr6.4:59886818-59886837 | MS.gene042962:CDS | 35.0% |
| !! | GCTACTTTGTTATTAGTGAG+AGG | + | chr6.4:59886602-59886621 | None:intergenic | 35.0% |
| !! | TCAACACTATCATTGGTTTC+GGG | - | chr6.4:59886819-59886838 | MS.gene042962:CDS | 35.0% |
| !! | TTTTTCAGATGATTGTTGGG+CGG | - | chr6.4:59884634-59884653 | MS.gene042962:intron | 35.0% |
| AAAGGAAGATCCAGCAACAT+GGG | - | chr6.4:59885543-59885562 | MS.gene042962:intron | 40.0% | |
| AATAAGGCTTCACTCATTGG+TGG | + | chr6.4:59885397-59885416 | None:intergenic | 40.0% | |
| ACTTGTAGTAAACGTATGCC+TGG | - | chr6.4:59885043-59885062 | MS.gene042962:intron | 40.0% | |
| ATGCAACAGTAACTGCATCT+TGG | - | chr6.4:59886651-59886670 | MS.gene042962:intron | 40.0% | |
| CACATGAAAGGCTTGAAGTT+GGG | - | chr6.4:59884913-59884932 | MS.gene042962:intron | 40.0% | |
| CTAATGCCCAAATGCTGAAA+TGG | + | chr6.4:59886006-59886025 | None:intergenic | 40.0% | |
| GATATGCTCGAAGTTGGAAA+TGG | - | chr6.4:59885953-59885972 | MS.gene042962:intron | 40.0% | |
| GGAAATAGTTGGAGAACAAC+AGG | - | chr6.4:59885577-59885596 | MS.gene042962:intron | 40.0% | |
| TAATTACCATTCCATCCTCC+AGG | + | chr6.4:59885823-59885842 | None:intergenic | 40.0% | |
| TATCATTTCAGCTGATGCGA+TGG | - | chr6.4:59884367-59884386 | MS.gene042962:intron | 40.0% | |
| TCACATGAAAGGCTTGAAGT+TGG | - | chr6.4:59884912-59884931 | MS.gene042962:intron | 40.0% | |
| TGATGCAAGAGATTTATGGG+AGG | - | chr6.4:59886706-59886725 | MS.gene042962:intron | 40.0% | |
| TGGGAATCTATTCAGATGCT+GGG | - | chr6.4:59884932-59884951 | MS.gene042962:intron | 40.0% | |
| TTAGGGAAATATGGTTCCCA+AGG | - | chr6.4:59884846-59884865 | MS.gene042962:intron | 40.0% | |
| TTGGGAATCTATTCAGATGC+TGG | - | chr6.4:59884931-59884950 | MS.gene042962:intron | 40.0% | |
| TTTCCAACTTCGAGCATATC+AGG | + | chr6.4:59885953-59885972 | None:intergenic | 40.0% | |
| ! | ACAAAGTAGCAGTGGTCTTA+TGG | - | chr6.4:59886612-59886631 | MS.gene042962:intron | 40.0% |
| ! | GTGTGAATGGTGAGTTGAAT+TGG | - | chr6.4:59885447-59885466 | MS.gene042962:intron | 40.0% |
| !! | AACACTATCATTGGTTTCGG+GGG | - | chr6.4:59886821-59886840 | MS.gene042962:CDS | 40.0% |
| !! | CAACACTATCATTGGTTTCG+GGG | - | chr6.4:59886820-59886839 | MS.gene042962:CDS | 40.0% |
| AAACGTATGCCTGGATCACT+GGG | - | chr6.4:59885052-59885071 | MS.gene042962:intron | 45.0% | |
| AAGGCTTCAACGTTTCCTTC+AGG | - | chr6.4:59884865-59884884 | MS.gene042962:intron | 45.0% | |
| ACTGCATCTTGGTCAGACAT+AGG | - | chr6.4:59886662-59886681 | MS.gene042962:intron | 45.0% | |
| AGATGGTATAGCATACCCCA+TGG | + | chr6.4:59884031-59884050 | None:intergenic | 45.0% | |
| AGCAACATGGGCCAAAAATG+TGG | - | chr6.4:59885555-59885574 | MS.gene042962:intron | 45.0% | |
| ATCGTGCCCATTTCAGCATT+TGG | - | chr6.4:59885996-59886015 | MS.gene042962:intron | 45.0% | |
| ATGCTCGAAGTTGGAAATGG+AGG | - | chr6.4:59885956-59885975 | MS.gene042962:intron | 45.0% | |
| ATGGTATAGCATACCCCATG+GGG | + | chr6.4:59884029-59884048 | None:intergenic | 45.0% | |
| ATTTCATGTCCCAGTGATCC+AGG | + | chr6.4:59885064-59885083 | None:intergenic | 45.0% | |
| CAGCATTTGGGCATTAGCTA+AGG | - | chr6.4:59886009-59886028 | MS.gene042962:intron | 45.0% | |
| GAAAGGAAGATCCAGCAACA+TGG | - | chr6.4:59885542-59885561 | MS.gene042962:intron | 45.0% | |
| GAAGGAAACGTTGAAGCCTT+GGG | + | chr6.4:59884865-59884884 | None:intergenic | 45.0% | |
| GACAAATGGGCATCTTATGC+TGG | - | chr6.4:59885796-59885815 | MS.gene042962:intron | 45.0% | |
| GATCCTGATATGCTCGAAGT+TGG | - | chr6.4:59885947-59885966 | MS.gene042962:intron | 45.0% | |
| GATGGTATAGCATACCCCAT+GGG | + | chr6.4:59884030-59884049 | None:intergenic | 45.0% | |
| GCAACATGGGCCAAAAATGT+GGG | - | chr6.4:59885556-59885575 | MS.gene042962:intron | 45.0% | |
| GCAGCACTCAACACTATCAT+TGG | - | chr6.4:59886812-59886831 | MS.gene042962:CDS | 45.0% | |
| GCTAGAAGCTTGATTCCTGA+AGG | + | chr6.4:59884883-59884902 | None:intergenic | 45.0% | |
| GGAACTTAATCGAGACTCAC+AGG | - | chr6.4:59884655-59884674 | MS.gene042962:intron | 45.0% | |
| GGGAGGTAAGAGAGTTAGTT+AGG | - | chr6.4:59886723-59886742 | MS.gene042962:intron | 45.0% | |
| TAAACGTATGCCTGGATCAC+TGG | - | chr6.4:59885051-59885070 | MS.gene042962:intron | 45.0% | |
| TCGTGCCCATTTCAGCATTT+GGG | - | chr6.4:59885997-59886016 | MS.gene042962:intron | 45.0% | |
| TGAAACTCACACGCTTCTTG+TGG | - | chr6.4:59886268-59886287 | MS.gene042962:intron | 45.0% | |
| TGAAGGAAACGTTGAAGCCT+TGG | + | chr6.4:59884866-59884885 | None:intergenic | 45.0% | |
| ! | AAATGGAGGCATGACAACAG+AGG | - | chr6.4:59885970-59885989 | MS.gene042962:intron | 45.0% |
| !!! | ACATTTTTGGCCCATGTTGC+TGG | + | chr6.4:59885556-59885575 | None:intergenic | 45.0% |
| AAGCGAGCAGCTGAAGATGA+TGG | + | chr6.4:59883928-59883947 | None:intergenic | 50.0% | |
| TGGTATAGCATACCCCATGG+GGG | + | chr6.4:59884028-59884047 | None:intergenic | 50.0% | |
| ACTTGTACCCTAGGGCAGCA+AGG | + | chr6.4:59884403-59884422 | None:intergenic | 55.0% | |
| CTATGGAGATAGGTGTGGGC+AGG | - | chr6.4:59886575-59886594 | MS.gene042962:intron | 55.0% | |
| CTTATGCTGGACCTGGAGGA+TGG | - | chr6.4:59885809-59885828 | MS.gene042962:intron | 55.0% | |
| GCATCTTATGCTGGACCTGG+AGG | - | chr6.4:59885805-59885824 | MS.gene042962:intron | 55.0% | |
| GGTATAGCATACCCCATGGG+GGG | + | chr6.4:59884027-59884046 | None:intergenic | 55.0% | |
| TGGGCATCTTATGCTGGACC+TGG | - | chr6.4:59885802-59885821 | MS.gene042962:intron | 55.0% | |
| ! | GCTGATGCGATGGTGTCAAC+TGG | - | chr6.4:59884377-59884396 | MS.gene042962:intron | 55.0% |
| ACTTGGTCAGACACCCCCCA+TGG | - | chr6.4:59884011-59884030 | MS.gene042962:intron | 60.0% | |
| CTTGGTCAGACACCCCCCAT+GGG | - | chr6.4:59884012-59884031 | MS.gene042962:intron | 60.0% | |
| GCTGGACCTGGAGGATGGAA+TGG | - | chr6.4:59885814-59885833 | MS.gene042962:intron | 60.0% | |
| TTGGTCAGACACCCCCCATG+GGG | - | chr6.4:59884013-59884032 | MS.gene042962:intron | 60.0% | |
| !! | CAACTGGCCTTGCTGCCCTA+GGG | - | chr6.4:59884393-59884412 | MS.gene042962:intron | 60.0% |
| !! | TCAACTGGCCTTGCTGCCCT+AGG | - | chr6.4:59884392-59884411 | MS.gene042962:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 59883862 | 59886908 | 59883862 | ID=MS.gene042962 |
| chr6.4 | mRNA | 59883862 | 59886908 | 59883862 | ID=MS.gene042962.t1;Parent=MS.gene042962 |
| chr6.4 | exon | 59886736 | 59886908 | 59886736 | ID=MS.gene042962.t1.exon1;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59886736 | 59886908 | 59886736 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59886499 | 59886557 | 59886499 | ID=MS.gene042962.t1.exon2;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59886499 | 59886557 | 59886499 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59886336 | 59886392 | 59886336 | ID=MS.gene042962.t1.exon3;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59886336 | 59886392 | 59886336 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59886094 | 59886128 | 59886094 | ID=MS.gene042962.t1.exon4;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59886094 | 59886128 | 59886094 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59885817 | 59885920 | 59885817 | ID=MS.gene042962.t1.exon5;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59885817 | 59885920 | 59885817 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59885659 | 59885734 | 59885659 | ID=MS.gene042962.t1.exon6;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59885659 | 59885734 | 59885659 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59885489 | 59885547 | 59885489 | ID=MS.gene042962.t1.exon7;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59885489 | 59885547 | 59885489 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59885315 | 59885380 | 59885315 | ID=MS.gene042962.t1.exon8;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59885315 | 59885380 | 59885315 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59885147 | 59885230 | 59885147 | ID=MS.gene042962.t1.exon9;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59885147 | 59885230 | 59885147 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59884935 | 59884999 | 59884935 | ID=MS.gene042962.t1.exon10;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59884935 | 59884999 | 59884935 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59884740 | 59884822 | 59884740 | ID=MS.gene042962.t1.exon11;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59884740 | 59884822 | 59884740 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59884558 | 59884648 | 59884558 | ID=MS.gene042962.t1.exon12;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59884558 | 59884648 | 59884558 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59884422 | 59884471 | 59884422 | ID=MS.gene042962.t1.exon13;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59884422 | 59884471 | 59884422 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59884043 | 59884183 | 59884043 | ID=MS.gene042962.t1.exon14;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59884043 | 59884183 | 59884043 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| chr6.4 | exon | 59883862 | 59883954 | 59883862 | ID=MS.gene042962.t1.exon15;Parent=MS.gene042962.t1 |
| chr6.4 | CDS | 59883862 | 59883954 | 59883862 | ID=cds.MS.gene042962.t1;Parent=MS.gene042962.t1 |
| Gene Sequence |
| Protein sequence |
