Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042963.t1 | KEH27106.1 | 96.6 | 408 | 9 | 2 | 1 | 403 | 1 | 408 | 6.60E-225 | 789.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042963.t1 | P14749 | 79.9 | 368 | 70 | 1 | 38 | 401 | 43 | 410 | 7.8e-174 | 611.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042963.t1 | A0A072UCB8 | 96.6 | 408 | 9 | 2 | 1 | 403 | 1 | 408 | 4.8e-225 | 789.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene042963 | MS.gene013419 | PPI |
MS.gene27501 | MS.gene042963 | PPI |
MS.gene87684 | MS.gene042963 | PPI |
MS.gene87685 | MS.gene042963 | PPI |
MS.gene92763 | MS.gene042963 | PPI |
MS.gene042963 | MS.gene049391 | PPI |
MS.gene06516 | MS.gene042963 | PPI |
MS.gene059347 | MS.gene042963 | PPI |
MS.gene27500 | MS.gene042963 | PPI |
MS.gene042963 | MS.gene92764 | PPI |
MS.gene042963 | MS.gene036941 | PPI |
MS.gene036942 | MS.gene042963 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042963.t1 | MTR_6g086625 | 96.569 | 408 | 9 | 2 | 1 | 403 | 1 | 408 | 0.0 | 807 |
MS.gene042963.t1 | MTR_6g086575 | 92.875 | 407 | 25 | 1 | 1 | 403 | 1 | 407 | 0.0 | 779 |
MS.gene042963.t1 | MTR_1g077480 | 89.855 | 414 | 31 | 2 | 1 | 403 | 1 | 414 | 0.0 | 763 |
MS.gene042963.t1 | MTR_1g077520 | 80.247 | 405 | 72 | 3 | 3 | 400 | 4 | 407 | 0.0 | 681 |
MS.gene042963.t1 | MTR_6g069140 | 77.003 | 387 | 79 | 2 | 24 | 400 | 33 | 419 | 0.0 | 627 |
MS.gene042963.t1 | MTR_1g077520 | 80.120 | 332 | 58 | 3 | 3 | 327 | 4 | 334 | 0.0 | 561 |
MS.gene042963.t1 | MTR_7g073640 | 60.349 | 401 | 150 | 5 | 7 | 400 | 9 | 407 | 4.95e-178 | 502 |
MS.gene042963.t1 | MTR_7g073650 | 62.730 | 381 | 135 | 4 | 27 | 400 | 26 | 406 | 3.34e-177 | 500 |
MS.gene042963.t1 | MTR_3g094160 | 61.725 | 371 | 133 | 4 | 41 | 403 | 59 | 428 | 5.15e-172 | 488 |
MS.gene042963.t1 | MTR_1g078410 | 59.565 | 230 | 34 | 3 | 1 | 223 | 1 | 178 | 3.22e-81 | 247 |
MS.gene042963.t1 | MTR_0279s0030 | 50.407 | 123 | 55 | 3 | 284 | 400 | 101 | 223 | 3.92e-33 | 124 |
MS.gene042963.t1 | MTR_0279s0030 | 50.407 | 123 | 55 | 3 | 284 | 400 | 185 | 307 | 4.15e-32 | 124 |
MS.gene042963.t1 | MTR_0279s0030 | 50.407 | 123 | 55 | 3 | 284 | 400 | 250 | 372 | 1.54e-31 | 123 |
MS.gene042963.t1 | MTR_8g089725 | 25.825 | 515 | 249 | 21 | 7 | 401 | 4 | 505 | 7.40e-27 | 112 |
MS.gene042963.t1 | MTR_8g089735 | 25.631 | 515 | 250 | 21 | 7 | 401 | 4 | 505 | 4.76e-26 | 110 |
MS.gene042963.t1 | MTR_3g086580 | 25.630 | 476 | 235 | 16 | 8 | 391 | 3 | 451 | 2.44e-23 | 102 |
MS.gene042963.t1 | MTR_8g089745 | 24.876 | 402 | 205 | 14 | 4 | 320 | 1 | 390 | 1.32e-22 | 99.8 |
MS.gene042963.t1 | MTR_8g089745 | 24.876 | 402 | 205 | 14 | 4 | 320 | 1 | 390 | 3.29e-22 | 99.4 |
MS.gene042963.t1 | MTR_8g089740 | 25.377 | 398 | 199 | 15 | 9 | 320 | 1 | 386 | 1.03e-21 | 97.8 |
MS.gene042963.t1 | MTR_2g096530 | 27.221 | 349 | 164 | 12 | 51 | 312 | 40 | 385 | 3.48e-21 | 96.3 |
MS.gene042963.t1 | MTR_3g086580 | 28.185 | 259 | 138 | 9 | 161 | 391 | 26 | 264 | 4.21e-13 | 70.9 |
MS.gene042963.t1 | MTR_3g094180 | 45.455 | 77 | 39 | 1 | 308 | 381 | 2 | 78 | 8.74e-13 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042963.t1 | AT5G08370 | 71.858 | 366 | 99 | 1 | 42 | 403 | 31 | 396 | 0.0 | 573 |
MS.gene042963.t1 | AT5G08370 | 71.858 | 366 | 99 | 1 | 42 | 403 | 5 | 370 | 0.0 | 571 |
MS.gene042963.t1 | AT5G08380 | 59.360 | 406 | 156 | 4 | 3 | 400 | 4 | 408 | 3.67e-180 | 508 |
MS.gene042963.t1 | AT3G56310 | 63.488 | 367 | 125 | 5 | 43 | 401 | 65 | 430 | 3.19e-172 | 488 |
MS.gene042963.t1 | AT3G56310 | 59.401 | 367 | 116 | 6 | 43 | 401 | 65 | 406 | 7.94e-154 | 441 |
MS.gene042963.t1 | AT5G08380 | 61.342 | 313 | 119 | 1 | 3 | 313 | 4 | 316 | 9.24e-146 | 417 |
MS.gene042963.t1 | AT3G26380 | 25.788 | 349 | 169 | 12 | 51 | 312 | 42 | 387 | 2.56e-21 | 95.9 |
MS.gene042963.t1 | AT3G26380 | 25.788 | 349 | 169 | 12 | 51 | 312 | 42 | 387 | 4.44e-21 | 95.9 |
Find 103 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCAGCTGCTCGATTATT+AGG | 0.206376 | 6.4:-59900552 | MS.gene042963:CDS |
CAACATATAACTCTTAATTT+TGG | 0.213476 | 6.4:+59900515 | None:intergenic |
TCAACACAATCATTGGTTTC+TGG | 0.218008 | 6.4:-59897718 | MS.gene042963:CDS |
TAGTTGATGCAAGAGATTTA+TGG | 0.246206 | 6.4:-59897833 | MS.gene042963:CDS |
TTAAATATGTTAGGGAAATA+TGG | 0.256152 | 6.4:-59899667 | MS.gene042963:intron |
ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 6.4:-59899428 | MS.gene042963:CDS |
CCAACTATTTCCCACACTTT+TGG | 0.260055 | 6.4:+59898960 | None:intergenic |
ACAAAGTAGCAGTGGTCTTA+TGG | 0.274504 | 6.4:-59897923 | MS.gene042963:CDS |
ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 6.4:-59898538 | MS.gene042963:CDS |
TGCCAAAACATTTGCTTCTT+GGG | 0.290074 | 6.4:-59899427 | MS.gene042963:intron |
GGGTACAAGTATATCAATTT+AGG | 0.295779 | 6.4:-59900094 | MS.gene042963:intron |
TTTCCAACTTCGAGCATATC+AGG | 0.305679 | 6.4:+59898584 | None:intergenic |
AAGAGTTATATGTTGCAAAA+TGG | 0.307994 | 6.4:-59900507 | MS.gene042963:CDS |
ATATTACAACCAACTAATAA+AGG | 0.326535 | 6.4:+59898409 | None:intergenic |
TTTAATAAGGCTTCACTCAT+TGG | 0.327142 | 6.4:+59899129 | None:intergenic |
CAGGAGATATTGAAGATAAC+TGG | 0.351324 | 6.4:-59898930 | MS.gene042963:CDS |
CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 6.4:+59898531 | None:intergenic |
CAAAAGCAACAATGATTTAG+AGG | 0.357578 | 6.4:-59898207 | MS.gene042963:intron |
AGTTGATGCAAGAGATTTAT+GGG | 0.361924 | 6.4:-59897832 | MS.gene042963:CDS |
TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 6.4:-59898537 | MS.gene042963:CDS |
TACCCAAGAAGCAAATGTTT+TGG | 0.362595 | 6.4:+59899425 | None:intergenic |
TGTATGTTCTGACACCTAAA+AGG | 0.366627 | 6.4:-59897657 | MS.gene042963:CDS |
TATGATAATTGTGAAAATAA+TGG | 0.367657 | 6.4:-59899276 | MS.gene042963:CDS |
TGGAATAGTTGGAACCATTT+CGG | 0.372287 | 6.4:-59900293 | MS.gene042963:CDS |
GAGTGAAGCCTTATTAAAAT+CGG | 0.376993 | 6.4:-59899124 | MS.gene042963:CDS |
TATTACAACCAACTAATAAA+GGG | 0.382437 | 6.4:+59898410 | None:intergenic |
TGTCAGAACATACATCTTAC+AGG | 0.389030 | 6.4:+59897666 | None:intergenic |
TGATGTTCAGATGGAATAGT+TGG | 0.389098 | 6.4:-59900304 | MS.gene042963:intron |
TAATAGATGTAAATGACAAA+TGG | 0.395220 | 6.4:-59898752 | MS.gene042963:CDS |
GCAGCACTCAACACAATCAT+TGG | 0.401559 | 6.4:-59897725 | MS.gene042963:intron |
TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 6.4:+59899641 | None:intergenic |
AAATAGGCCCCTTTATTAGT+TGG | 0.414998 | 6.4:-59898418 | MS.gene042963:intron |
ACTGCATCCTGGTCAGATAT+AGG | 0.424252 | 6.4:-59897873 | MS.gene042963:CDS |
GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 6.4:-59900257 | MS.gene042963:intron |
GCTGATGCGATGGTGTCAAC+TGG | 0.433263 | 6.4:-59900130 | MS.gene042963:CDS |
TCAACTGGACTTGCTGCCCT+AGG | 0.444646 | 6.4:-59900115 | MS.gene042963:CDS |
CATTTATATCACAGCCGAAA+TGG | 0.445979 | 6.4:+59900279 | None:intergenic |
CATCGGAAAGGCTTGAAGTT+GGG | 0.448224 | 6.4:-59899591 | MS.gene042963:CDS |
TAGAGCAATGGCTAGATTGA+TGG | 0.453710 | 6.4:-59900628 | None:intergenic |
GGAAATAGTTGGAGAACAAC+AGG | 0.462081 | 6.4:-59898949 | MS.gene042963:CDS |
AATAGATGTAAATGACAAAT+GGG | 0.464657 | 6.4:-59898751 | MS.gene042963:CDS |
GATATGCTCGAAGTTGGAAA+TGG | 0.467367 | 6.4:-59898581 | MS.gene042963:CDS |
ATTTCATGTCCTAGTGATCC+AGG | 0.469966 | 6.4:+59899456 | None:intergenic |
TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 6.4:+59898532 | None:intergenic |
GACAAATGGGCATCTTATGC+TGG | 0.477215 | 6.4:-59898738 | MS.gene042963:CDS |
ATATTGAAGATAACTGGAAT+AGG | 0.480224 | 6.4:-59898924 | MS.gene042963:intron |
TTGGGAATTTATTCAGATGC+CGG | 0.482913 | 6.4:-59899573 | MS.gene042963:CDS |
CAGCATTTGGGCATTAGCTA+AGG | 0.486215 | 6.4:-59898525 | MS.gene042963:intron |
AATTGATATACTTGTACCCT+AGG | 0.490789 | 6.4:+59900098 | None:intergenic |
TCTTCTTCTCTATGTGTGAA+TGG | 0.495440 | 6.4:-59899092 | MS.gene042963:intron |
AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 6.4:-59899639 | MS.gene042963:CDS |
ACTTGTAGTAAACGTATGCC+TGG | 0.499229 | 6.4:-59899474 | MS.gene042963:CDS |
GATCCTGATATGCTCGAAGT+TGG | 0.500070 | 6.4:-59898587 | MS.gene042963:CDS |
TCATCGGAAAGGCTTGAAGT+TGG | 0.502672 | 6.4:-59899592 | MS.gene042963:CDS |
AGTGAAGCCTTATTAAAATC+GGG | 0.508984 | 6.4:-59899123 | MS.gene042963:CDS |
GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 6.4:+59899642 | None:intergenic |
ATGGTATAAGTGTTAGAGAA+AGG | 0.512588 | 6.4:-59899257 | MS.gene042963:intron |
GGTGCTTGCATTATGTATCC+TGG | 0.516060 | 6.4:-59900607 | MS.gene042963:CDS |
AATCGAGCAGCTGAAGATGA+TGG | 0.516977 | 6.4:+59900558 | None:intergenic |
TCAGATATAGGTCTGAAATC+AGG | 0.516980 | 6.4:-59897861 | MS.gene042963:CDS |
CTCTAGCTCATTATATTCAT+CGG | 0.518908 | 6.4:-59899608 | MS.gene042963:CDS |
AATAAGGCTTCACTCATTGG+TGG | 0.521866 | 6.4:+59899132 | None:intergenic |
GCTACTTTGTTATTATTGAG+AGG | 0.523143 | 6.4:+59897936 | None:intergenic |
TAATTACCATTCCATCCTCC+AGG | 0.523855 | 6.4:+59898714 | None:intergenic |
CCAAAAGTGTGGGAAATAGT+TGG | 0.526021 | 6.4:-59898960 | MS.gene042963:CDS |
CAACTGGACTTGCTGCCCTA+GGG | 0.527150 | 6.4:-59900114 | MS.gene042963:CDS |
TGGGAATTTATTCAGATGCC+GGG | 0.530152 | 6.4:-59899572 | MS.gene042963:intron |
TATATGTTGCAAAATGGACT+TGG | 0.531723 | 6.4:-59900501 | MS.gene042963:CDS |
AGCAACATGGGCCAAAAGTG+TGG | 0.542837 | 6.4:-59898971 | MS.gene042963:CDS |
CTTATGCTGGACCTGGAGGA+TGG | 0.545149 | 6.4:-59898725 | MS.gene042963:CDS |
CTATGGATATAGGTTTGGGC+AGG | 0.545776 | 6.4:-59897960 | MS.gene042963:intron |
ATGGGAAGATCCAGCAACAT+GGG | 0.549059 | 6.4:-59898983 | MS.gene042963:CDS |
TGGGCATCTTATGCTGGACC+TGG | 0.550800 | 6.4:-59898732 | MS.gene042963:CDS |
ATGCAACGGTAACTGCATCC+TGG | 0.556007 | 6.4:-59897884 | MS.gene042963:CDS |
TGGTTGTAATATTCAAGCAA+TGG | 0.558395 | 6.4:-59898398 | MS.gene042963:CDS |
TTATTTGAAACATAGGGGAT+GGG | 0.561757 | 6.4:-59899001 | MS.gene042963:intron |
AAACGTATGCCTGGATCACT+AGG | 0.565228 | 6.4:-59899465 | MS.gene042963:CDS |
AAACATATATACCTGTATCT+CGG | 0.565473 | 6.4:+59900246 | None:intergenic |
TATCATTTCAGCTGATGCGA+TGG | 0.569529 | 6.4:-59900140 | MS.gene042963:intron |
GATGGGAAGATCCAGCAACA+TGG | 0.570848 | 6.4:-59898984 | MS.gene042963:CDS |
TTAGGGAAATATGGTTCCCA+AGG | 0.571959 | 6.4:-59899658 | MS.gene042963:intron |
AGAACTTAATCGAGACTCAC+AGG | 0.572244 | 6.4:-59899839 | MS.gene042963:intron |
GCTAGAGCTTTAATTCCTGA+AGG | 0.574804 | 6.4:+59899624 | None:intergenic |
ACTTGGTCAGACACCTCCCA+TGG | 0.576039 | 6.4:-59900484 | MS.gene042963:CDS |
GCTCATTATATTCATCGGAA+AGG | 0.586081 | 6.4:-59899603 | MS.gene042963:CDS |
CTTGGTCAGACACCTCCCAT+GGG | 0.589037 | 6.4:-59900483 | MS.gene042963:CDS |
CAATAATATTCAGCAACACC+AGG | 0.592160 | 6.4:+59900589 | None:intergenic |
GCTGGACCTGGAGGATGGAA+TGG | 0.600529 | 6.4:-59898720 | MS.gene042963:intron |
ATGCTCGAAGTTGGAAATGG+AGG | 0.603679 | 6.4:-59898578 | MS.gene042963:CDS |
CAATAATAACAAAGTAGCAG+TGG | 0.606485 | 6.4:-59897931 | MS.gene042963:CDS |
GCAACATGGGCCAAAAGTGT+GGG | 0.608316 | 6.4:-59898970 | MS.gene042963:CDS |
ATTACAACCAACTAATAAAG+GGG | 0.610550 | 6.4:+59898411 | None:intergenic |
TAGAAGTTCATCAAATGCAA+CGG | 0.621482 | 6.4:-59897898 | MS.gene042963:CDS |
TTTCAGACCTATATCTGACC+AGG | 0.624392 | 6.4:+59897866 | None:intergenic |
GAAGTTATTGCAGTAAACCA+AGG | 0.635887 | 6.4:-59898343 | MS.gene042963:intron |
AAGCCTTATTAAAATCGGGA+AGG | 0.639835 | 6.4:-59899119 | MS.gene042963:CDS |
ATTGATATACTTGTACCCTA+GGG | 0.641607 | 6.4:+59900099 | None:intergenic |
GCATCTTATGCTGGACCTGG+AGG | 0.645529 | 6.4:-59898729 | MS.gene042963:CDS |
GAGGGTATAGCATACCCCAT+GGG | 0.653031 | 6.4:+59900468 | None:intergenic |
AAATGGAGGCATGACAACAG+AGG | 0.691145 | 6.4:-59898564 | MS.gene042963:CDS |
GGTATAGCATACCCCATGGG+AGG | 0.697835 | 6.4:+59900471 | None:intergenic |
TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 6.4:-59897829 | MS.gene042963:intron |
TTGGTCAGACACCTCCCATG+GGG | 0.730500 | 6.4:-59900482 | MS.gene042963:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTGTAAAAATAATAGTTT+AGG | + | chr6.4:59898073-59898092 | None:intergenic | 10.0% |
!! | ATTGTAAAAATAATAGTTTA+GGG | + | chr6.4:59898072-59898091 | None:intergenic | 10.0% |
!! | TCATAAATATATAATTGATT+AGG | + | chr6.4:59897951-59897970 | None:intergenic | 10.0% |
!! | AAAATAAACATACAAATCAA+TGG | + | chr6.4:59898490-59898509 | None:intergenic | 15.0% |
!! | CAAAACAATTTAAATTCATT+TGG | - | chr6.4:59900500-59900519 | MS.gene042963:CDS | 15.0% |
!! | GTGTCTATTTAAAAAAAAAT+AGG | - | chr6.4:59898526-59898545 | MS.gene042963:CDS | 15.0% |
!! | TATACTTTCATGTATTTAAT+TGG | + | chr6.4:59897922-59897941 | None:intergenic | 15.0% |
!! | TATGATAATTGTGAAAATAA+TGG | - | chr6.4:59898996-59899015 | MS.gene042963:intron | 15.0% |
!! | TCAAATAATGTATGTATATA+TGG | + | chr6.4:59898875-59898894 | None:intergenic | 15.0% |
!!! | AATTTCTTATTTGAAACATA+GGG | - | chr6.4:59899265-59899284 | MS.gene042963:CDS | 15.0% |
!!! | TAATTTCTTATTTGAAACAT+AGG | - | chr6.4:59899264-59899283 | MS.gene042963:CDS | 15.0% |
!!! | TTAAATTCATTTGGTTTTAA+TGG | - | chr6.4:59900509-59900528 | MS.gene042963:CDS | 15.0% |
!!! | TTGTTTTTAACTATTTTACT+CGG | - | chr6.4:59899828-59899847 | MS.gene042963:intron | 15.0% |
!! | AAACTTAAACACCATATAAA+GGG | + | chr6.4:59900107-59900126 | None:intergenic | 20.0% |
!! | AAATTTAATATGTTCATACC+CGG | + | chr6.4:59898721-59898740 | None:intergenic | 20.0% |
!! | AACAAAATAAAGAGTAAGTA+TGG | + | chr6.4:59898242-59898261 | None:intergenic | 20.0% |
!! | AATAGATGTAAATGACAAAT+GGG | - | chr6.4:59899521-59899540 | MS.gene042963:intron | 20.0% |
!! | ACACAAATGATTTGATTATA+AGG | + | chr6.4:59900224-59900243 | None:intergenic | 20.0% |
!! | ACTAAAAATTCTATGGATAT+AGG | - | chr6.4:59900302-59900321 | MS.gene042963:intron | 20.0% |
!! | ACTTCTTACTAAAAATTCTA+TGG | - | chr6.4:59900295-59900314 | MS.gene042963:CDS | 20.0% |
!! | AGAAAAATTTGAACCAATAT+TGG | + | chr6.4:59898954-59898973 | None:intergenic | 20.0% |
!! | ATATATTTATGATGTTCAGA+TGG | - | chr6.4:59897959-59897978 | MS.gene042963:intron | 20.0% |
!! | ATATTACAACCAACTAATAA+AGG | + | chr6.4:59899866-59899885 | None:intergenic | 20.0% |
!! | ATTTGAATTTGAATGAACAA+TGG | + | chr6.4:59897848-59897867 | None:intergenic | 20.0% |
!! | GAGAATCATAAAAGAAAAAA+TGG | + | chr6.4:59897875-59897894 | None:intergenic | 20.0% |
!! | TAATAGATGTAAATGACAAA+TGG | - | chr6.4:59899520-59899539 | MS.gene042963:intron | 20.0% |
!! | TATTACAACCAACTAATAAA+GGG | + | chr6.4:59899865-59899884 | None:intergenic | 20.0% |
!! | TTAAATATGTTAGGGAAATA+TGG | - | chr6.4:59898605-59898624 | MS.gene042963:intron | 20.0% |
!! | TTAACTTTCAAATCAATACA+TGG | - | chr6.4:59900161-59900180 | MS.gene042963:intron | 20.0% |
!! | TTATTATCTTTCCCTTTATA+TGG | - | chr6.4:59900093-59900112 | MS.gene042963:intron | 20.0% |
!!! | ATTGGTTCAAATTTTTCTTT+AGG | - | chr6.4:59898956-59898975 | MS.gene042963:CDS | 20.0% |
!!! | ATTTCTTATTTGAAACATAG+GGG | - | chr6.4:59899266-59899285 | MS.gene042963:CDS | 20.0% |
!!! | CAACATATAACTCTTAATTT+TGG | + | chr6.4:59897760-59897779 | None:intergenic | 20.0% |
!!! | TTGGTTCAAATTTTTCTTTA+GGG | - | chr6.4:59898957-59898976 | MS.gene042963:CDS | 20.0% |
! | AAACATATATACCTGTATCT+CGG | + | chr6.4:59898029-59898048 | None:intergenic | 25.0% |
! | AAATTCTATGGATATAGGTT+TGG | - | chr6.4:59900307-59900326 | MS.gene042963:intron | 25.0% |
! | AAGAGTTATATGTTGCAAAA+TGG | - | chr6.4:59897765-59897784 | MS.gene042963:intron | 25.0% |
! | AATTCTATGGATATAGGTTT+GGG | - | chr6.4:59900308-59900327 | MS.gene042963:intron | 25.0% |
! | ACAAGTATATCAATTTAGGT+AGG | - | chr6.4:59898182-59898201 | MS.gene042963:intron | 25.0% |
! | ATATTGAAGATAACTGGAAT+AGG | - | chr6.4:59899348-59899367 | MS.gene042963:intron | 25.0% |
! | ATGAGAATGACAAATAAAGA+GGG | + | chr6.4:59897825-59897844 | None:intergenic | 25.0% |
! | ATTACAACCAACTAATAAAG+GGG | + | chr6.4:59899864-59899883 | None:intergenic | 25.0% |
! | CAAACTTAAACACCATATAA+AGG | + | chr6.4:59900108-59900127 | None:intergenic | 25.0% |
! | CATTCATAAAATTACTAGTG+AGG | + | chr6.4:59899589-59899608 | None:intergenic | 25.0% |
! | TAGTATCATTATAAGTTGTG+AGG | + | chr6.4:59900134-59900153 | None:intergenic | 25.0% |
! | TATTACTTTGTCTCAACAAT+AGG | + | chr6.4:59899795-59899814 | None:intergenic | 25.0% |
! | TTTCATATGTTGTGTAAATC+AGG | - | chr6.4:59899114-59899133 | MS.gene042963:CDS | 25.0% |
!! | CTATTTTACTCGGTTTAAAT+AGG | - | chr6.4:59899838-59899857 | MS.gene042963:intron | 25.0% |
!! | CTGACTAGTTAAATATGTTA+GGG | - | chr6.4:59898597-59898616 | MS.gene042963:intron | 25.0% |
!! | CTTATGTTGTTTACCAATAT+TGG | - | chr6.4:59898938-59898957 | MS.gene042963:CDS | 25.0% |
!! | TCTGACTAGTTAAATATGTT+AGG | - | chr6.4:59898596-59898615 | MS.gene042963:intron | 25.0% |
!! | TTTGCGTAATAATTTAGCTT+AGG | - | chr6.4:59899418-59899437 | MS.gene042963:intron | 25.0% |
!! | TTTTTCTTCAGATGATTGTT+GGG | - | chr6.4:59898409-59898428 | MS.gene042963:CDS | 25.0% |
!!! | TTTTTTCTTCAGATGATTGT+TGG | - | chr6.4:59898408-59898427 | MS.gene042963:CDS | 25.0% |
AAACATTAATGACACATACG+AGG | + | chr6.4:59899657-59899676 | None:intergenic | 30.0% | |
AATTGATATACTTGTACCCT+AGG | + | chr6.4:59898177-59898196 | None:intergenic | 30.0% | |
AGTATATCAATTTAGGTAGG+TGG | - | chr6.4:59898185-59898204 | MS.gene042963:intron | 30.0% | |
AGTGATCAACAATCATATTC+AGG | + | chr6.4:59898755-59898774 | None:intergenic | 30.0% | |
ATGGTATAAGTGTTAGAGAA+AGG | - | chr6.4:59899015-59899034 | MS.gene042963:intron | 30.0% | |
ATTGATATACTTGTACCCTA+GGG | + | chr6.4:59898176-59898195 | None:intergenic | 30.0% | |
CAAAAGCAACAATGATTTAG+AGG | - | chr6.4:59900065-59900084 | MS.gene042963:intron | 30.0% | |
CAATAATAACAAAGTAGCAG+TGG | - | chr6.4:59900341-59900360 | MS.gene042963:intron | 30.0% | |
CTATTATAGAAGTCATGCTA+GGG | + | chr6.4:59899506-59899525 | None:intergenic | 30.0% | |
GATGAGAATGACAAATAAAG+AGG | + | chr6.4:59897826-59897845 | None:intergenic | 30.0% | |
GGGTACAAGTATATCAATTT+AGG | - | chr6.4:59898178-59898197 | MS.gene042963:intron | 30.0% | |
TAGAAGTTCATCAAATGCAA+CGG | - | chr6.4:59900374-59900393 | MS.gene042963:intron | 30.0% | |
TCTATTATAGAAGTCATGCT+AGG | + | chr6.4:59899507-59899526 | None:intergenic | 30.0% | |
TGGTTGTAATATTCAAGCAA+TGG | - | chr6.4:59899874-59899893 | MS.gene042963:intron | 30.0% | |
TGTGGTATTGCATATAAACT+TGG | - | chr6.4:59900024-59900043 | MS.gene042963:intron | 30.0% | |
TTTAATAAGGCTTCACTCAT+TGG | + | chr6.4:59899146-59899165 | None:intergenic | 30.0% | |
! | AGTTGATGCAAGAGATTTAT+GGG | - | chr6.4:59900440-59900459 | MS.gene042963:intron | 30.0% |
! | CTCTAGCTCATTATATTCAT+CGG | - | chr6.4:59898664-59898683 | MS.gene042963:intron | 30.0% |
! | TAGTTGATGCAAGAGATTTA+TGG | - | chr6.4:59900439-59900458 | MS.gene042963:intron | 30.0% |
! | TATATGTTGCAAAATGGACT+TGG | - | chr6.4:59897771-59897790 | MS.gene042963:intron | 30.0% |
! | TCGTATGTGTCATTAATGTT+TGG | - | chr6.4:59899656-59899675 | MS.gene042963:CDS | 30.0% |
! | TTATTTGAAACATAGGGGAT+GGG | - | chr6.4:59899271-59899290 | MS.gene042963:CDS | 30.0% |
!! | AGTGAAGCCTTATTAAAATC+GGG | - | chr6.4:59899149-59899168 | MS.gene042963:intron | 30.0% |
!! | CATTAGTTTGCATATATCAC+GGG | + | chr6.4:59900198-59900217 | None:intergenic | 30.0% |
!! | GAGTGAAGCCTTATTAAAAT+CGG | - | chr6.4:59899148-59899167 | MS.gene042963:intron | 30.0% |
!! | GCATTAGTTTGCATATATCA+CGG | + | chr6.4:59900199-59900218 | None:intergenic | 30.0% |
!! | GCTACTTTGTTATTATTGAG+AGG | + | chr6.4:59900339-59900358 | None:intergenic | 30.0% |
AAATAGGCCCCTTTATTAGT+TGG | - | chr6.4:59899854-59899873 | MS.gene042963:CDS | 35.0% | |
AGGGATGGAATAAAGTTAGT+TGG | + | chr6.4:59899487-59899506 | None:intergenic | 35.0% | |
ATGCCAAAACATTTGCTTCT+TGG | - | chr6.4:59898844-59898863 | MS.gene042963:intron | 35.0% | |
CAATAATATTCAGCAACACC+AGG | + | chr6.4:59897686-59897705 | None:intergenic | 35.0% | |
CAGGAGATATTGAAGATAAC+TGG | - | chr6.4:59899342-59899361 | MS.gene042963:intron | 35.0% | |
CATTTATATCACAGCCGAAA+TGG | + | chr6.4:59897996-59898015 | None:intergenic | 35.0% | |
GAAAGTTTAATCCGAGATAC+AGG | - | chr6.4:59898015-59898034 | MS.gene042963:intron | 35.0% | |
GAAGTTATTGCAGTAAACCA+AGG | - | chr6.4:59899929-59899948 | MS.gene042963:intron | 35.0% | |
GCATATAAACTTGGAGTTCA+GGG | - | chr6.4:59900033-59900052 | MS.gene042963:intron | 35.0% | |
GCTCATTATATTCATCGGAA+AGG | - | chr6.4:59898669-59898688 | MS.gene042963:intron | 35.0% | |
TAATGCCCAAATGCTGAAAT+GGG | + | chr6.4:59899743-59899762 | None:intergenic | 35.0% | |
TCAAGAAAGTCTTCTTACCT+TGG | + | chr6.4:59899949-59899968 | None:intergenic | 35.0% | |
TCTTCTTCTCTATGTGTGAA+TGG | - | chr6.4:59899180-59899199 | MS.gene042963:intron | 35.0% | |
TGAAACTTACACGTTTCTTG+TGG | - | chr6.4:59900006-59900025 | MS.gene042963:intron | 35.0% | |
TGATGTTCAGATGGAATAGT+TGG | - | chr6.4:59897968-59897987 | MS.gene042963:intron | 35.0% | |
TGCATATAAACTTGGAGTTC+AGG | - | chr6.4:59900032-59900051 | MS.gene042963:intron | 35.0% | |
TGCCAAAACATTTGCTTCTT+GGG | - | chr6.4:59898845-59898864 | MS.gene042963:intron | 35.0% | |
TGGAATAGTTGGAACCATTT+CGG | - | chr6.4:59897979-59897998 | MS.gene042963:intron | 35.0% | |
TGTATGTTCTGACACCTAAA+AGG | - | chr6.4:59900615-59900634 | MS.gene042963:CDS | 35.0% | |
TGTCAGAACATACATCTTAC+AGG | + | chr6.4:59900609-59900628 | None:intergenic | 35.0% | |
TTGGGAATTTATTCAGATGC+CGG | - | chr6.4:59898699-59898718 | MS.gene042963:intron | 35.0% | |
! | CTTATTTGAAACATAGGGGA+TGG | - | chr6.4:59899270-59899289 | MS.gene042963:CDS | 35.0% |
! | TACCCAAGAAGCAAATGTTT+TGG | + | chr6.4:59898850-59898869 | None:intergenic | 35.0% |
! | TCAGATATAGGTCTGAAATC+AGG | - | chr6.4:59900411-59900430 | MS.gene042963:intron | 35.0% |
!! | AAGCCTTATTAAAATCGGGA+AGG | - | chr6.4:59899153-59899172 | MS.gene042963:intron | 35.0% |
!! | TCAACACAATCATTGGTTTC+TGG | - | chr6.4:59900554-59900573 | MS.gene042963:CDS | 35.0% |
!! | TGACCTTCCCGATTTTAATA+AGG | + | chr6.4:59899159-59899178 | None:intergenic | 35.0% |
AATAAGGCTTCACTCATTGG+TGG | + | chr6.4:59899143-59899162 | None:intergenic | 40.0% | |
ACTTGTAGTAAACGTATGCC+TGG | - | chr6.4:59898798-59898817 | MS.gene042963:intron | 40.0% | |
AGAACTTAATCGAGACTCAC+AGG | - | chr6.4:59898433-59898452 | MS.gene042963:intron | 40.0% | |
ATTTCATGTCCTAGTGATCC+AGG | + | chr6.4:59898819-59898838 | None:intergenic | 40.0% | |
CTAATGCCCAAATGCTGAAA+TGG | + | chr6.4:59899744-59899763 | None:intergenic | 40.0% | |
GATATGCTCGAAGTTGGAAA+TGG | - | chr6.4:59899691-59899710 | MS.gene042963:intron | 40.0% | |
GGAAATAGTTGGAGAACAAC+AGG | - | chr6.4:59899323-59899342 | MS.gene042963:intron | 40.0% | |
GTGTGAATGGTGAGTTAGAT+TGG | - | chr6.4:59899193-59899212 | MS.gene042963:intron | 40.0% | |
TAATTACCATTCCATCCTCC+AGG | + | chr6.4:59899561-59899580 | None:intergenic | 40.0% | |
TATAGAAGTCATGCTAGGGA+TGG | + | chr6.4:59899502-59899521 | None:intergenic | 40.0% | |
TATCATTTCAGCTGATGCGA+TGG | - | chr6.4:59898132-59898151 | MS.gene042963:intron | 40.0% | |
TCTTCAGCTGCTCGATTATT+AGG | - | chr6.4:59897720-59897739 | MS.gene042963:CDS | 40.0% | |
TGATGCAAGAGATTTATGGG+AGG | - | chr6.4:59900443-59900462 | MS.gene042963:intron | 40.0% | |
TGGGAATTTATTCAGATGCC+GGG | - | chr6.4:59898700-59898719 | MS.gene042963:intron | 40.0% | |
TTAGGGAAATATGGTTCCCA+AGG | - | chr6.4:59898614-59898633 | MS.gene042963:intron | 40.0% | |
TTATGGGAGGTAAGAGAGTT+AGG | - | chr6.4:59900456-59900475 | MS.gene042963:intron | 40.0% | |
TTTCAGACCTATATCTGACC+AGG | + | chr6.4:59900409-59900428 | None:intergenic | 40.0% | |
TTTCCAACTTCGAGCATATC+AGG | + | chr6.4:59899691-59899710 | None:intergenic | 40.0% | |
! | ACAAAGTAGCAGTGGTCTTA+TGG | - | chr6.4:59900349-59900368 | MS.gene042963:intron | 40.0% |
! | CCAAAAGTGTGGGAAATAGT+TGG | - | chr6.4:59899312-59899331 | MS.gene042963:intron | 40.0% |
! | CCAACTATTTCCCACACTTT+TGG | + | chr6.4:59899315-59899334 | None:intergenic | 40.0% |
! | GCTAGAGCTTTAATTCCTGA+AGG | + | chr6.4:59898651-59898670 | None:intergenic | 40.0% |
AAACGTATGCCTGGATCACT+AGG | - | chr6.4:59898807-59898826 | MS.gene042963:intron | 45.0% | |
AAGGCTTCAACGTTTCCTTC+AGG | - | chr6.4:59898633-59898652 | MS.gene042963:intron | 45.0% | |
AATCGAGCAGCTGAAGATGA+TGG | + | chr6.4:59897717-59897736 | None:intergenic | 45.0% | |
ACTGCATCCTGGTCAGATAT+AGG | - | chr6.4:59900399-59900418 | MS.gene042963:intron | 45.0% | |
ATCGTGCCCATTTCAGCATT+TGG | - | chr6.4:59899734-59899753 | MS.gene042963:intron | 45.0% | |
ATGCTCGAAGTTGGAAATGG+AGG | - | chr6.4:59899694-59899713 | MS.gene042963:intron | 45.0% | |
ATGGGAAGATCCAGCAACAT+GGG | - | chr6.4:59899289-59899308 | MS.gene042963:CDS | 45.0% | |
CAATTTAGGTAGGTGGCAAG+TGG | - | chr6.4:59898192-59898211 | MS.gene042963:intron | 45.0% | |
CAGCATTTGGGCATTAGCTA+AGG | - | chr6.4:59899747-59899766 | MS.gene042963:intron | 45.0% | |
CATCGGAAAGGCTTGAAGTT+GGG | - | chr6.4:59898681-59898700 | MS.gene042963:intron | 45.0% | |
CTATGGATATAGGTTTGGGC+AGG | - | chr6.4:59900312-59900331 | MS.gene042963:intron | 45.0% | |
GAAGGAAACGTTGAAGCCTT+GGG | + | chr6.4:59898633-59898652 | None:intergenic | 45.0% | |
GACAAATGGGCATCTTATGC+TGG | - | chr6.4:59899534-59899553 | MS.gene042963:intron | 45.0% | |
GATCCTGATATGCTCGAAGT+TGG | - | chr6.4:59899685-59899704 | MS.gene042963:intron | 45.0% | |
GCAGCACTCAACACAATCAT+TGG | - | chr6.4:59900547-59900566 | MS.gene042963:CDS | 45.0% | |
GGTGCTTGCATTATGTATCC+TGG | - | chr6.4:59897665-59897684 | MS.gene042963:CDS | 45.0% | |
TCATCGGAAAGGCTTGAAGT+TGG | - | chr6.4:59898680-59898699 | MS.gene042963:intron | 45.0% | |
TCGTGCCCATTTCAGCATTT+GGG | - | chr6.4:59899735-59899754 | MS.gene042963:intron | 45.0% | |
TGAAGGAAACGTTGAAGCCT+TGG | + | chr6.4:59898634-59898653 | None:intergenic | 45.0% | |
! | AAATGGAGGCATGACAACAG+AGG | - | chr6.4:59899708-59899727 | MS.gene042963:intron | 45.0% |
AGCAACATGGGCCAAAAGTG+TGG | - | chr6.4:59899301-59899320 | MS.gene042963:intron | 50.0% | |
ATGCAACGGTAACTGCATCC+TGG | - | chr6.4:59900388-59900407 | MS.gene042963:intron | 50.0% | |
GATGGGAAGATCCAGCAACA+TGG | - | chr6.4:59899288-59899307 | MS.gene042963:CDS | 50.0% | |
! | ACACTTTTGGCCCATGTTGC+TGG | + | chr6.4:59899302-59899321 | None:intergenic | 50.0% |
! | AGAGGGTATAGCATACCCCA+TGG | + | chr6.4:59897808-59897827 | None:intergenic | 50.0% |
! | GAGGGTATAGCATACCCCAT+GGG | + | chr6.4:59897807-59897826 | None:intergenic | 50.0% |
! | GCAACATGGGCCAAAAGTGT+GGG | - | chr6.4:59899302-59899321 | MS.gene042963:intron | 50.0% |
ACTTGGTCAGACACCTCCCA+TGG | - | chr6.4:59897788-59897807 | MS.gene042963:intron | 55.0% | |
CTTATGCTGGACCTGGAGGA+TGG | - | chr6.4:59899547-59899566 | MS.gene042963:intron | 55.0% | |
CTTGGTCAGACACCTCCCAT+GGG | - | chr6.4:59897789-59897808 | MS.gene042963:intron | 55.0% | |
GCATCTTATGCTGGACCTGG+AGG | - | chr6.4:59899543-59899562 | MS.gene042963:intron | 55.0% | |
GGTATAGCATACCCCATGGG+AGG | + | chr6.4:59897804-59897823 | None:intergenic | 55.0% | |
TGGGCATCTTATGCTGGACC+TGG | - | chr6.4:59899540-59899559 | MS.gene042963:intron | 55.0% | |
TTGGTCAGACACCTCCCATG+GGG | - | chr6.4:59897790-59897809 | MS.gene042963:intron | 55.0% | |
! | GCTGATGCGATGGTGTCAAC+TGG | - | chr6.4:59898142-59898161 | MS.gene042963:intron | 55.0% |
!! | CAACTGGACTTGCTGCCCTA+GGG | - | chr6.4:59898158-59898177 | MS.gene042963:intron | 55.0% |
!! | TCAACTGGACTTGCTGCCCT+AGG | - | chr6.4:59898157-59898176 | MS.gene042963:intron | 55.0% |
GCTGGACCTGGAGGATGGAA+TGG | - | chr6.4:59899552-59899571 | MS.gene042963:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 59897651 | 59900643 | 59897651 | ID=MS.gene042963 |
chr6.4 | mRNA | 59897651 | 59900643 | 59897651 | ID=MS.gene042963.t1;Parent=MS.gene042963 |
chr6.4 | exon | 59900483 | 59900643 | 59900483 | ID=MS.gene042963.t1.exon1;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59900483 | 59900643 | 59900483 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59900258 | 59900316 | 59900258 | ID=MS.gene042963.t1.exon2;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59900258 | 59900316 | 59900258 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59900095 | 59900151 | 59900095 | ID=MS.gene042963.t1.exon3;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59900095 | 59900151 | 59900095 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59899840 | 59899874 | 59899840 | ID=MS.gene042963.t1.exon4;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59899840 | 59899874 | 59899840 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59899573 | 59899676 | 59899573 | ID=MS.gene042963.t1.exon5;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59899573 | 59899676 | 59899573 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59899428 | 59899503 | 59899428 | ID=MS.gene042963.t1.exon6;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59899428 | 59899503 | 59899428 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59899258 | 59899316 | 59899258 | ID=MS.gene042963.t1.exon7;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59899258 | 59899316 | 59899258 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59899093 | 59899158 | 59899093 | ID=MS.gene042963.t1.exon8;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59899093 | 59899158 | 59899093 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59898925 | 59899008 | 59898925 | ID=MS.gene042963.t1.exon9;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59898925 | 59899008 | 59898925 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59898721 | 59898785 | 59898721 | ID=MS.gene042963.t1.exon10;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59898721 | 59898785 | 59898721 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59898526 | 59898608 | 59898526 | ID=MS.gene042963.t1.exon11;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59898526 | 59898608 | 59898526 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59898344 | 59898434 | 59898344 | ID=MS.gene042963.t1.exon12;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59898344 | 59898434 | 59898344 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59898208 | 59898245 | 59898208 | ID=MS.gene042963.t1.exon13;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59898208 | 59898245 | 59898208 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59897830 | 59897970 | 59897830 | ID=MS.gene042963.t1.exon14;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59897830 | 59897970 | 59897830 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
chr6.4 | exon | 59897651 | 59897743 | 59897651 | ID=MS.gene042963.t1.exon15;Parent=MS.gene042963.t1 |
chr6.4 | CDS | 59897651 | 59897743 | 59897651 | ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1 |
Gene Sequence |
Protein sequence |