AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042963


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042963.t1 MTR_6g086625 96.569 408 9 2 1 403 1 408 0.0 807
MS.gene042963.t1 MTR_6g086575 92.875 407 25 1 1 403 1 407 0.0 779
MS.gene042963.t1 MTR_1g077480 89.855 414 31 2 1 403 1 414 0.0 763
MS.gene042963.t1 MTR_1g077520 80.247 405 72 3 3 400 4 407 0.0 681
MS.gene042963.t1 MTR_6g069140 77.003 387 79 2 24 400 33 419 0.0 627
MS.gene042963.t1 MTR_1g077520 80.120 332 58 3 3 327 4 334 0.0 561
MS.gene042963.t1 MTR_7g073640 60.349 401 150 5 7 400 9 407 4.95e-178 502
MS.gene042963.t1 MTR_7g073650 62.730 381 135 4 27 400 26 406 3.34e-177 500
MS.gene042963.t1 MTR_3g094160 61.725 371 133 4 41 403 59 428 5.15e-172 488
MS.gene042963.t1 MTR_1g078410 59.565 230 34 3 1 223 1 178 3.22e-81 247
MS.gene042963.t1 MTR_0279s0030 50.407 123 55 3 284 400 101 223 3.92e-33 124
MS.gene042963.t1 MTR_0279s0030 50.407 123 55 3 284 400 185 307 4.15e-32 124
MS.gene042963.t1 MTR_0279s0030 50.407 123 55 3 284 400 250 372 1.54e-31 123
MS.gene042963.t1 MTR_8g089725 25.825 515 249 21 7 401 4 505 7.40e-27 112
MS.gene042963.t1 MTR_8g089735 25.631 515 250 21 7 401 4 505 4.76e-26 110
MS.gene042963.t1 MTR_3g086580 25.630 476 235 16 8 391 3 451 2.44e-23 102
MS.gene042963.t1 MTR_8g089745 24.876 402 205 14 4 320 1 390 1.32e-22 99.8
MS.gene042963.t1 MTR_8g089745 24.876 402 205 14 4 320 1 390 3.29e-22 99.4
MS.gene042963.t1 MTR_8g089740 25.377 398 199 15 9 320 1 386 1.03e-21 97.8
MS.gene042963.t1 MTR_2g096530 27.221 349 164 12 51 312 40 385 3.48e-21 96.3
MS.gene042963.t1 MTR_3g086580 28.185 259 138 9 161 391 26 264 4.21e-13 70.9
MS.gene042963.t1 MTR_3g094180 45.455 77 39 1 308 381 2 78 8.74e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042963.t1 AT5G08370 71.858 366 99 1 42 403 31 396 0.0 573
MS.gene042963.t1 AT5G08370 71.858 366 99 1 42 403 5 370 0.0 571
MS.gene042963.t1 AT5G08380 59.360 406 156 4 3 400 4 408 3.67e-180 508
MS.gene042963.t1 AT3G56310 63.488 367 125 5 43 401 65 430 3.19e-172 488
MS.gene042963.t1 AT3G56310 59.401 367 116 6 43 401 65 406 7.94e-154 441
MS.gene042963.t1 AT5G08380 61.342 313 119 1 3 313 4 316 9.24e-146 417
MS.gene042963.t1 AT3G26380 25.788 349 169 12 51 312 42 387 2.56e-21 95.9
MS.gene042963.t1 AT3G26380 25.788 349 169 12 51 312 42 387 4.44e-21 95.9

Find 103 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAGCTGCTCGATTATT+AGG 0.206376 6.4:-59900552 MS.gene042963:CDS
CAACATATAACTCTTAATTT+TGG 0.213476 6.4:+59900515 None:intergenic
TCAACACAATCATTGGTTTC+TGG 0.218008 6.4:-59897718 MS.gene042963:CDS
TAGTTGATGCAAGAGATTTA+TGG 0.246206 6.4:-59897833 MS.gene042963:CDS
TTAAATATGTTAGGGAAATA+TGG 0.256152 6.4:-59899667 MS.gene042963:intron
ATGCCAAAACATTTGCTTCT+TGG 0.258381 6.4:-59899428 MS.gene042963:CDS
CCAACTATTTCCCACACTTT+TGG 0.260055 6.4:+59898960 None:intergenic
ACAAAGTAGCAGTGGTCTTA+TGG 0.274504 6.4:-59897923 MS.gene042963:CDS
ATCGTGCCCATTTCAGCATT+TGG 0.278804 6.4:-59898538 MS.gene042963:CDS
TGCCAAAACATTTGCTTCTT+GGG 0.290074 6.4:-59899427 MS.gene042963:intron
GGGTACAAGTATATCAATTT+AGG 0.295779 6.4:-59900094 MS.gene042963:intron
TTTCCAACTTCGAGCATATC+AGG 0.305679 6.4:+59898584 None:intergenic
AAGAGTTATATGTTGCAAAA+TGG 0.307994 6.4:-59900507 MS.gene042963:CDS
ATATTACAACCAACTAATAA+AGG 0.326535 6.4:+59898409 None:intergenic
TTTAATAAGGCTTCACTCAT+TGG 0.327142 6.4:+59899129 None:intergenic
CAGGAGATATTGAAGATAAC+TGG 0.351324 6.4:-59898930 MS.gene042963:CDS
CTAATGCCCAAATGCTGAAA+TGG 0.353093 6.4:+59898531 None:intergenic
CAAAAGCAACAATGATTTAG+AGG 0.357578 6.4:-59898207 MS.gene042963:intron
AGTTGATGCAAGAGATTTAT+GGG 0.361924 6.4:-59897832 MS.gene042963:CDS
TCGTGCCCATTTCAGCATTT+GGG 0.362441 6.4:-59898537 MS.gene042963:CDS
TACCCAAGAAGCAAATGTTT+TGG 0.362595 6.4:+59899425 None:intergenic
TGTATGTTCTGACACCTAAA+AGG 0.366627 6.4:-59897657 MS.gene042963:CDS
TATGATAATTGTGAAAATAA+TGG 0.367657 6.4:-59899276 MS.gene042963:CDS
TGGAATAGTTGGAACCATTT+CGG 0.372287 6.4:-59900293 MS.gene042963:CDS
GAGTGAAGCCTTATTAAAAT+CGG 0.376993 6.4:-59899124 MS.gene042963:CDS
TATTACAACCAACTAATAAA+GGG 0.382437 6.4:+59898410 None:intergenic
TGTCAGAACATACATCTTAC+AGG 0.389030 6.4:+59897666 None:intergenic
TGATGTTCAGATGGAATAGT+TGG 0.389098 6.4:-59900304 MS.gene042963:intron
TAATAGATGTAAATGACAAA+TGG 0.395220 6.4:-59898752 MS.gene042963:CDS
GCAGCACTCAACACAATCAT+TGG 0.401559 6.4:-59897725 MS.gene042963:intron
TGAAGGAAACGTTGAAGCCT+TGG 0.402252 6.4:+59899641 None:intergenic
AAATAGGCCCCTTTATTAGT+TGG 0.414998 6.4:-59898418 MS.gene042963:intron
ACTGCATCCTGGTCAGATAT+AGG 0.424252 6.4:-59897873 MS.gene042963:CDS
GAAAGTTTAATCCGAGATAC+AGG 0.426792 6.4:-59900257 MS.gene042963:intron
GCTGATGCGATGGTGTCAAC+TGG 0.433263 6.4:-59900130 MS.gene042963:CDS
TCAACTGGACTTGCTGCCCT+AGG 0.444646 6.4:-59900115 MS.gene042963:CDS
CATTTATATCACAGCCGAAA+TGG 0.445979 6.4:+59900279 None:intergenic
CATCGGAAAGGCTTGAAGTT+GGG 0.448224 6.4:-59899591 MS.gene042963:CDS
TAGAGCAATGGCTAGATTGA+TGG 0.453710 6.4:-59900628 None:intergenic
GGAAATAGTTGGAGAACAAC+AGG 0.462081 6.4:-59898949 MS.gene042963:CDS
AATAGATGTAAATGACAAAT+GGG 0.464657 6.4:-59898751 MS.gene042963:CDS
GATATGCTCGAAGTTGGAAA+TGG 0.467367 6.4:-59898581 MS.gene042963:CDS
ATTTCATGTCCTAGTGATCC+AGG 0.469966 6.4:+59899456 None:intergenic
TAATGCCCAAATGCTGAAAT+GGG 0.470549 6.4:+59898532 None:intergenic
GACAAATGGGCATCTTATGC+TGG 0.477215 6.4:-59898738 MS.gene042963:CDS
ATATTGAAGATAACTGGAAT+AGG 0.480224 6.4:-59898924 MS.gene042963:intron
TTGGGAATTTATTCAGATGC+CGG 0.482913 6.4:-59899573 MS.gene042963:CDS
CAGCATTTGGGCATTAGCTA+AGG 0.486215 6.4:-59898525 MS.gene042963:intron
AATTGATATACTTGTACCCT+AGG 0.490789 6.4:+59900098 None:intergenic
TCTTCTTCTCTATGTGTGAA+TGG 0.495440 6.4:-59899092 MS.gene042963:intron
AAGGCTTCAACGTTTCCTTC+AGG 0.495513 6.4:-59899639 MS.gene042963:CDS
ACTTGTAGTAAACGTATGCC+TGG 0.499229 6.4:-59899474 MS.gene042963:CDS
GATCCTGATATGCTCGAAGT+TGG 0.500070 6.4:-59898587 MS.gene042963:CDS
TCATCGGAAAGGCTTGAAGT+TGG 0.502672 6.4:-59899592 MS.gene042963:CDS
AGTGAAGCCTTATTAAAATC+GGG 0.508984 6.4:-59899123 MS.gene042963:CDS
GAAGGAAACGTTGAAGCCTT+GGG 0.511297 6.4:+59899642 None:intergenic
ATGGTATAAGTGTTAGAGAA+AGG 0.512588 6.4:-59899257 MS.gene042963:intron
GGTGCTTGCATTATGTATCC+TGG 0.516060 6.4:-59900607 MS.gene042963:CDS
AATCGAGCAGCTGAAGATGA+TGG 0.516977 6.4:+59900558 None:intergenic
TCAGATATAGGTCTGAAATC+AGG 0.516980 6.4:-59897861 MS.gene042963:CDS
CTCTAGCTCATTATATTCAT+CGG 0.518908 6.4:-59899608 MS.gene042963:CDS
AATAAGGCTTCACTCATTGG+TGG 0.521866 6.4:+59899132 None:intergenic
GCTACTTTGTTATTATTGAG+AGG 0.523143 6.4:+59897936 None:intergenic
TAATTACCATTCCATCCTCC+AGG 0.523855 6.4:+59898714 None:intergenic
CCAAAAGTGTGGGAAATAGT+TGG 0.526021 6.4:-59898960 MS.gene042963:CDS
CAACTGGACTTGCTGCCCTA+GGG 0.527150 6.4:-59900114 MS.gene042963:CDS
TGGGAATTTATTCAGATGCC+GGG 0.530152 6.4:-59899572 MS.gene042963:intron
TATATGTTGCAAAATGGACT+TGG 0.531723 6.4:-59900501 MS.gene042963:CDS
AGCAACATGGGCCAAAAGTG+TGG 0.542837 6.4:-59898971 MS.gene042963:CDS
CTTATGCTGGACCTGGAGGA+TGG 0.545149 6.4:-59898725 MS.gene042963:CDS
CTATGGATATAGGTTTGGGC+AGG 0.545776 6.4:-59897960 MS.gene042963:intron
ATGGGAAGATCCAGCAACAT+GGG 0.549059 6.4:-59898983 MS.gene042963:CDS
TGGGCATCTTATGCTGGACC+TGG 0.550800 6.4:-59898732 MS.gene042963:CDS
ATGCAACGGTAACTGCATCC+TGG 0.556007 6.4:-59897884 MS.gene042963:CDS
TGGTTGTAATATTCAAGCAA+TGG 0.558395 6.4:-59898398 MS.gene042963:CDS
TTATTTGAAACATAGGGGAT+GGG 0.561757 6.4:-59899001 MS.gene042963:intron
AAACGTATGCCTGGATCACT+AGG 0.565228 6.4:-59899465 MS.gene042963:CDS
AAACATATATACCTGTATCT+CGG 0.565473 6.4:+59900246 None:intergenic
TATCATTTCAGCTGATGCGA+TGG 0.569529 6.4:-59900140 MS.gene042963:intron
GATGGGAAGATCCAGCAACA+TGG 0.570848 6.4:-59898984 MS.gene042963:CDS
TTAGGGAAATATGGTTCCCA+AGG 0.571959 6.4:-59899658 MS.gene042963:intron
AGAACTTAATCGAGACTCAC+AGG 0.572244 6.4:-59899839 MS.gene042963:intron
GCTAGAGCTTTAATTCCTGA+AGG 0.574804 6.4:+59899624 None:intergenic
ACTTGGTCAGACACCTCCCA+TGG 0.576039 6.4:-59900484 MS.gene042963:CDS
GCTCATTATATTCATCGGAA+AGG 0.586081 6.4:-59899603 MS.gene042963:CDS
CTTGGTCAGACACCTCCCAT+GGG 0.589037 6.4:-59900483 MS.gene042963:CDS
CAATAATATTCAGCAACACC+AGG 0.592160 6.4:+59900589 None:intergenic
GCTGGACCTGGAGGATGGAA+TGG 0.600529 6.4:-59898720 MS.gene042963:intron
ATGCTCGAAGTTGGAAATGG+AGG 0.603679 6.4:-59898578 MS.gene042963:CDS
CAATAATAACAAAGTAGCAG+TGG 0.606485 6.4:-59897931 MS.gene042963:CDS
GCAACATGGGCCAAAAGTGT+GGG 0.608316 6.4:-59898970 MS.gene042963:CDS
ATTACAACCAACTAATAAAG+GGG 0.610550 6.4:+59898411 None:intergenic
TAGAAGTTCATCAAATGCAA+CGG 0.621482 6.4:-59897898 MS.gene042963:CDS
TTTCAGACCTATATCTGACC+AGG 0.624392 6.4:+59897866 None:intergenic
GAAGTTATTGCAGTAAACCA+AGG 0.635887 6.4:-59898343 MS.gene042963:intron
AAGCCTTATTAAAATCGGGA+AGG 0.639835 6.4:-59899119 MS.gene042963:CDS
ATTGATATACTTGTACCCTA+GGG 0.641607 6.4:+59900099 None:intergenic
GCATCTTATGCTGGACCTGG+AGG 0.645529 6.4:-59898729 MS.gene042963:CDS
GAGGGTATAGCATACCCCAT+GGG 0.653031 6.4:+59900468 None:intergenic
AAATGGAGGCATGACAACAG+AGG 0.691145 6.4:-59898564 MS.gene042963:CDS
GGTATAGCATACCCCATGGG+AGG 0.697835 6.4:+59900471 None:intergenic
TGATGCAAGAGATTTATGGG+AGG 0.716729 6.4:-59897829 MS.gene042963:intron
TTGGTCAGACACCTCCCATG+GGG 0.730500 6.4:-59900482 MS.gene042963:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTAAAAATAATAGTTT+AGG + chr6.4:59898073-59898092 None:intergenic 10.0%
!! ATTGTAAAAATAATAGTTTA+GGG + chr6.4:59898072-59898091 None:intergenic 10.0%
!! TCATAAATATATAATTGATT+AGG + chr6.4:59897951-59897970 None:intergenic 10.0%
!! AAAATAAACATACAAATCAA+TGG + chr6.4:59898490-59898509 None:intergenic 15.0%
!! CAAAACAATTTAAATTCATT+TGG - chr6.4:59900500-59900519 MS.gene042963:CDS 15.0%
!! GTGTCTATTTAAAAAAAAAT+AGG - chr6.4:59898526-59898545 MS.gene042963:CDS 15.0%
!! TATACTTTCATGTATTTAAT+TGG + chr6.4:59897922-59897941 None:intergenic 15.0%
!! TATGATAATTGTGAAAATAA+TGG - chr6.4:59898996-59899015 MS.gene042963:intron 15.0%
!! TCAAATAATGTATGTATATA+TGG + chr6.4:59898875-59898894 None:intergenic 15.0%
!!! AATTTCTTATTTGAAACATA+GGG - chr6.4:59899265-59899284 MS.gene042963:CDS 15.0%
!!! TAATTTCTTATTTGAAACAT+AGG - chr6.4:59899264-59899283 MS.gene042963:CDS 15.0%
!!! TTAAATTCATTTGGTTTTAA+TGG - chr6.4:59900509-59900528 MS.gene042963:CDS 15.0%
!!! TTGTTTTTAACTATTTTACT+CGG - chr6.4:59899828-59899847 MS.gene042963:intron 15.0%
!! AAACTTAAACACCATATAAA+GGG + chr6.4:59900107-59900126 None:intergenic 20.0%
!! AAATTTAATATGTTCATACC+CGG + chr6.4:59898721-59898740 None:intergenic 20.0%
!! AACAAAATAAAGAGTAAGTA+TGG + chr6.4:59898242-59898261 None:intergenic 20.0%
!! AATAGATGTAAATGACAAAT+GGG - chr6.4:59899521-59899540 MS.gene042963:intron 20.0%
!! ACACAAATGATTTGATTATA+AGG + chr6.4:59900224-59900243 None:intergenic 20.0%
!! ACTAAAAATTCTATGGATAT+AGG - chr6.4:59900302-59900321 MS.gene042963:intron 20.0%
!! ACTTCTTACTAAAAATTCTA+TGG - chr6.4:59900295-59900314 MS.gene042963:CDS 20.0%
!! AGAAAAATTTGAACCAATAT+TGG + chr6.4:59898954-59898973 None:intergenic 20.0%
!! ATATATTTATGATGTTCAGA+TGG - chr6.4:59897959-59897978 MS.gene042963:intron 20.0%
!! ATATTACAACCAACTAATAA+AGG + chr6.4:59899866-59899885 None:intergenic 20.0%
!! ATTTGAATTTGAATGAACAA+TGG + chr6.4:59897848-59897867 None:intergenic 20.0%
!! GAGAATCATAAAAGAAAAAA+TGG + chr6.4:59897875-59897894 None:intergenic 20.0%
!! TAATAGATGTAAATGACAAA+TGG - chr6.4:59899520-59899539 MS.gene042963:intron 20.0%
!! TATTACAACCAACTAATAAA+GGG + chr6.4:59899865-59899884 None:intergenic 20.0%
!! TTAAATATGTTAGGGAAATA+TGG - chr6.4:59898605-59898624 MS.gene042963:intron 20.0%
!! TTAACTTTCAAATCAATACA+TGG - chr6.4:59900161-59900180 MS.gene042963:intron 20.0%
!! TTATTATCTTTCCCTTTATA+TGG - chr6.4:59900093-59900112 MS.gene042963:intron 20.0%
!!! ATTGGTTCAAATTTTTCTTT+AGG - chr6.4:59898956-59898975 MS.gene042963:CDS 20.0%
!!! ATTTCTTATTTGAAACATAG+GGG - chr6.4:59899266-59899285 MS.gene042963:CDS 20.0%
!!! CAACATATAACTCTTAATTT+TGG + chr6.4:59897760-59897779 None:intergenic 20.0%
!!! TTGGTTCAAATTTTTCTTTA+GGG - chr6.4:59898957-59898976 MS.gene042963:CDS 20.0%
! AAACATATATACCTGTATCT+CGG + chr6.4:59898029-59898048 None:intergenic 25.0%
! AAATTCTATGGATATAGGTT+TGG - chr6.4:59900307-59900326 MS.gene042963:intron 25.0%
! AAGAGTTATATGTTGCAAAA+TGG - chr6.4:59897765-59897784 MS.gene042963:intron 25.0%
! AATTCTATGGATATAGGTTT+GGG - chr6.4:59900308-59900327 MS.gene042963:intron 25.0%
! ACAAGTATATCAATTTAGGT+AGG - chr6.4:59898182-59898201 MS.gene042963:intron 25.0%
! ATATTGAAGATAACTGGAAT+AGG - chr6.4:59899348-59899367 MS.gene042963:intron 25.0%
! ATGAGAATGACAAATAAAGA+GGG + chr6.4:59897825-59897844 None:intergenic 25.0%
! ATTACAACCAACTAATAAAG+GGG + chr6.4:59899864-59899883 None:intergenic 25.0%
! CAAACTTAAACACCATATAA+AGG + chr6.4:59900108-59900127 None:intergenic 25.0%
! CATTCATAAAATTACTAGTG+AGG + chr6.4:59899589-59899608 None:intergenic 25.0%
! TAGTATCATTATAAGTTGTG+AGG + chr6.4:59900134-59900153 None:intergenic 25.0%
! TATTACTTTGTCTCAACAAT+AGG + chr6.4:59899795-59899814 None:intergenic 25.0%
! TTTCATATGTTGTGTAAATC+AGG - chr6.4:59899114-59899133 MS.gene042963:CDS 25.0%
!! CTATTTTACTCGGTTTAAAT+AGG - chr6.4:59899838-59899857 MS.gene042963:intron 25.0%
!! CTGACTAGTTAAATATGTTA+GGG - chr6.4:59898597-59898616 MS.gene042963:intron 25.0%
!! CTTATGTTGTTTACCAATAT+TGG - chr6.4:59898938-59898957 MS.gene042963:CDS 25.0%
!! TCTGACTAGTTAAATATGTT+AGG - chr6.4:59898596-59898615 MS.gene042963:intron 25.0%
!! TTTGCGTAATAATTTAGCTT+AGG - chr6.4:59899418-59899437 MS.gene042963:intron 25.0%
!! TTTTTCTTCAGATGATTGTT+GGG - chr6.4:59898409-59898428 MS.gene042963:CDS 25.0%
!!! TTTTTTCTTCAGATGATTGT+TGG - chr6.4:59898408-59898427 MS.gene042963:CDS 25.0%
AAACATTAATGACACATACG+AGG + chr6.4:59899657-59899676 None:intergenic 30.0%
AATTGATATACTTGTACCCT+AGG + chr6.4:59898177-59898196 None:intergenic 30.0%
AGTATATCAATTTAGGTAGG+TGG - chr6.4:59898185-59898204 MS.gene042963:intron 30.0%
AGTGATCAACAATCATATTC+AGG + chr6.4:59898755-59898774 None:intergenic 30.0%
ATGGTATAAGTGTTAGAGAA+AGG - chr6.4:59899015-59899034 MS.gene042963:intron 30.0%
ATTGATATACTTGTACCCTA+GGG + chr6.4:59898176-59898195 None:intergenic 30.0%
CAAAAGCAACAATGATTTAG+AGG - chr6.4:59900065-59900084 MS.gene042963:intron 30.0%
CAATAATAACAAAGTAGCAG+TGG - chr6.4:59900341-59900360 MS.gene042963:intron 30.0%
CTATTATAGAAGTCATGCTA+GGG + chr6.4:59899506-59899525 None:intergenic 30.0%
GATGAGAATGACAAATAAAG+AGG + chr6.4:59897826-59897845 None:intergenic 30.0%
GGGTACAAGTATATCAATTT+AGG - chr6.4:59898178-59898197 MS.gene042963:intron 30.0%
TAGAAGTTCATCAAATGCAA+CGG - chr6.4:59900374-59900393 MS.gene042963:intron 30.0%
TCTATTATAGAAGTCATGCT+AGG + chr6.4:59899507-59899526 None:intergenic 30.0%
TGGTTGTAATATTCAAGCAA+TGG - chr6.4:59899874-59899893 MS.gene042963:intron 30.0%
TGTGGTATTGCATATAAACT+TGG - chr6.4:59900024-59900043 MS.gene042963:intron 30.0%
TTTAATAAGGCTTCACTCAT+TGG + chr6.4:59899146-59899165 None:intergenic 30.0%
! AGTTGATGCAAGAGATTTAT+GGG - chr6.4:59900440-59900459 MS.gene042963:intron 30.0%
! CTCTAGCTCATTATATTCAT+CGG - chr6.4:59898664-59898683 MS.gene042963:intron 30.0%
! TAGTTGATGCAAGAGATTTA+TGG - chr6.4:59900439-59900458 MS.gene042963:intron 30.0%
! TATATGTTGCAAAATGGACT+TGG - chr6.4:59897771-59897790 MS.gene042963:intron 30.0%
! TCGTATGTGTCATTAATGTT+TGG - chr6.4:59899656-59899675 MS.gene042963:CDS 30.0%
! TTATTTGAAACATAGGGGAT+GGG - chr6.4:59899271-59899290 MS.gene042963:CDS 30.0%
!! AGTGAAGCCTTATTAAAATC+GGG - chr6.4:59899149-59899168 MS.gene042963:intron 30.0%
!! CATTAGTTTGCATATATCAC+GGG + chr6.4:59900198-59900217 None:intergenic 30.0%
!! GAGTGAAGCCTTATTAAAAT+CGG - chr6.4:59899148-59899167 MS.gene042963:intron 30.0%
!! GCATTAGTTTGCATATATCA+CGG + chr6.4:59900199-59900218 None:intergenic 30.0%
!! GCTACTTTGTTATTATTGAG+AGG + chr6.4:59900339-59900358 None:intergenic 30.0%
AAATAGGCCCCTTTATTAGT+TGG - chr6.4:59899854-59899873 MS.gene042963:CDS 35.0%
AGGGATGGAATAAAGTTAGT+TGG + chr6.4:59899487-59899506 None:intergenic 35.0%
ATGCCAAAACATTTGCTTCT+TGG - chr6.4:59898844-59898863 MS.gene042963:intron 35.0%
CAATAATATTCAGCAACACC+AGG + chr6.4:59897686-59897705 None:intergenic 35.0%
CAGGAGATATTGAAGATAAC+TGG - chr6.4:59899342-59899361 MS.gene042963:intron 35.0%
CATTTATATCACAGCCGAAA+TGG + chr6.4:59897996-59898015 None:intergenic 35.0%
GAAAGTTTAATCCGAGATAC+AGG - chr6.4:59898015-59898034 MS.gene042963:intron 35.0%
GAAGTTATTGCAGTAAACCA+AGG - chr6.4:59899929-59899948 MS.gene042963:intron 35.0%
GCATATAAACTTGGAGTTCA+GGG - chr6.4:59900033-59900052 MS.gene042963:intron 35.0%
GCTCATTATATTCATCGGAA+AGG - chr6.4:59898669-59898688 MS.gene042963:intron 35.0%
TAATGCCCAAATGCTGAAAT+GGG + chr6.4:59899743-59899762 None:intergenic 35.0%
TCAAGAAAGTCTTCTTACCT+TGG + chr6.4:59899949-59899968 None:intergenic 35.0%
TCTTCTTCTCTATGTGTGAA+TGG - chr6.4:59899180-59899199 MS.gene042963:intron 35.0%
TGAAACTTACACGTTTCTTG+TGG - chr6.4:59900006-59900025 MS.gene042963:intron 35.0%
TGATGTTCAGATGGAATAGT+TGG - chr6.4:59897968-59897987 MS.gene042963:intron 35.0%
TGCATATAAACTTGGAGTTC+AGG - chr6.4:59900032-59900051 MS.gene042963:intron 35.0%
TGCCAAAACATTTGCTTCTT+GGG - chr6.4:59898845-59898864 MS.gene042963:intron 35.0%
TGGAATAGTTGGAACCATTT+CGG - chr6.4:59897979-59897998 MS.gene042963:intron 35.0%
TGTATGTTCTGACACCTAAA+AGG - chr6.4:59900615-59900634 MS.gene042963:CDS 35.0%
TGTCAGAACATACATCTTAC+AGG + chr6.4:59900609-59900628 None:intergenic 35.0%
TTGGGAATTTATTCAGATGC+CGG - chr6.4:59898699-59898718 MS.gene042963:intron 35.0%
! CTTATTTGAAACATAGGGGA+TGG - chr6.4:59899270-59899289 MS.gene042963:CDS 35.0%
! TACCCAAGAAGCAAATGTTT+TGG + chr6.4:59898850-59898869 None:intergenic 35.0%
! TCAGATATAGGTCTGAAATC+AGG - chr6.4:59900411-59900430 MS.gene042963:intron 35.0%
!! AAGCCTTATTAAAATCGGGA+AGG - chr6.4:59899153-59899172 MS.gene042963:intron 35.0%
!! TCAACACAATCATTGGTTTC+TGG - chr6.4:59900554-59900573 MS.gene042963:CDS 35.0%
!! TGACCTTCCCGATTTTAATA+AGG + chr6.4:59899159-59899178 None:intergenic 35.0%
AATAAGGCTTCACTCATTGG+TGG + chr6.4:59899143-59899162 None:intergenic 40.0%
ACTTGTAGTAAACGTATGCC+TGG - chr6.4:59898798-59898817 MS.gene042963:intron 40.0%
AGAACTTAATCGAGACTCAC+AGG - chr6.4:59898433-59898452 MS.gene042963:intron 40.0%
ATTTCATGTCCTAGTGATCC+AGG + chr6.4:59898819-59898838 None:intergenic 40.0%
CTAATGCCCAAATGCTGAAA+TGG + chr6.4:59899744-59899763 None:intergenic 40.0%
GATATGCTCGAAGTTGGAAA+TGG - chr6.4:59899691-59899710 MS.gene042963:intron 40.0%
GGAAATAGTTGGAGAACAAC+AGG - chr6.4:59899323-59899342 MS.gene042963:intron 40.0%
GTGTGAATGGTGAGTTAGAT+TGG - chr6.4:59899193-59899212 MS.gene042963:intron 40.0%
TAATTACCATTCCATCCTCC+AGG + chr6.4:59899561-59899580 None:intergenic 40.0%
TATAGAAGTCATGCTAGGGA+TGG + chr6.4:59899502-59899521 None:intergenic 40.0%
TATCATTTCAGCTGATGCGA+TGG - chr6.4:59898132-59898151 MS.gene042963:intron 40.0%
TCTTCAGCTGCTCGATTATT+AGG - chr6.4:59897720-59897739 MS.gene042963:CDS 40.0%
TGATGCAAGAGATTTATGGG+AGG - chr6.4:59900443-59900462 MS.gene042963:intron 40.0%
TGGGAATTTATTCAGATGCC+GGG - chr6.4:59898700-59898719 MS.gene042963:intron 40.0%
TTAGGGAAATATGGTTCCCA+AGG - chr6.4:59898614-59898633 MS.gene042963:intron 40.0%
TTATGGGAGGTAAGAGAGTT+AGG - chr6.4:59900456-59900475 MS.gene042963:intron 40.0%
TTTCAGACCTATATCTGACC+AGG + chr6.4:59900409-59900428 None:intergenic 40.0%
TTTCCAACTTCGAGCATATC+AGG + chr6.4:59899691-59899710 None:intergenic 40.0%
! ACAAAGTAGCAGTGGTCTTA+TGG - chr6.4:59900349-59900368 MS.gene042963:intron 40.0%
! CCAAAAGTGTGGGAAATAGT+TGG - chr6.4:59899312-59899331 MS.gene042963:intron 40.0%
! CCAACTATTTCCCACACTTT+TGG + chr6.4:59899315-59899334 None:intergenic 40.0%
! GCTAGAGCTTTAATTCCTGA+AGG + chr6.4:59898651-59898670 None:intergenic 40.0%
AAACGTATGCCTGGATCACT+AGG - chr6.4:59898807-59898826 MS.gene042963:intron 45.0%
AAGGCTTCAACGTTTCCTTC+AGG - chr6.4:59898633-59898652 MS.gene042963:intron 45.0%
AATCGAGCAGCTGAAGATGA+TGG + chr6.4:59897717-59897736 None:intergenic 45.0%
ACTGCATCCTGGTCAGATAT+AGG - chr6.4:59900399-59900418 MS.gene042963:intron 45.0%
ATCGTGCCCATTTCAGCATT+TGG - chr6.4:59899734-59899753 MS.gene042963:intron 45.0%
ATGCTCGAAGTTGGAAATGG+AGG - chr6.4:59899694-59899713 MS.gene042963:intron 45.0%
ATGGGAAGATCCAGCAACAT+GGG - chr6.4:59899289-59899308 MS.gene042963:CDS 45.0%
CAATTTAGGTAGGTGGCAAG+TGG - chr6.4:59898192-59898211 MS.gene042963:intron 45.0%
CAGCATTTGGGCATTAGCTA+AGG - chr6.4:59899747-59899766 MS.gene042963:intron 45.0%
CATCGGAAAGGCTTGAAGTT+GGG - chr6.4:59898681-59898700 MS.gene042963:intron 45.0%
CTATGGATATAGGTTTGGGC+AGG - chr6.4:59900312-59900331 MS.gene042963:intron 45.0%
GAAGGAAACGTTGAAGCCTT+GGG + chr6.4:59898633-59898652 None:intergenic 45.0%
GACAAATGGGCATCTTATGC+TGG - chr6.4:59899534-59899553 MS.gene042963:intron 45.0%
GATCCTGATATGCTCGAAGT+TGG - chr6.4:59899685-59899704 MS.gene042963:intron 45.0%
GCAGCACTCAACACAATCAT+TGG - chr6.4:59900547-59900566 MS.gene042963:CDS 45.0%
GGTGCTTGCATTATGTATCC+TGG - chr6.4:59897665-59897684 MS.gene042963:CDS 45.0%
TCATCGGAAAGGCTTGAAGT+TGG - chr6.4:59898680-59898699 MS.gene042963:intron 45.0%
TCGTGCCCATTTCAGCATTT+GGG - chr6.4:59899735-59899754 MS.gene042963:intron 45.0%
TGAAGGAAACGTTGAAGCCT+TGG + chr6.4:59898634-59898653 None:intergenic 45.0%
! AAATGGAGGCATGACAACAG+AGG - chr6.4:59899708-59899727 MS.gene042963:intron 45.0%
AGCAACATGGGCCAAAAGTG+TGG - chr6.4:59899301-59899320 MS.gene042963:intron 50.0%
ATGCAACGGTAACTGCATCC+TGG - chr6.4:59900388-59900407 MS.gene042963:intron 50.0%
GATGGGAAGATCCAGCAACA+TGG - chr6.4:59899288-59899307 MS.gene042963:CDS 50.0%
! ACACTTTTGGCCCATGTTGC+TGG + chr6.4:59899302-59899321 None:intergenic 50.0%
! AGAGGGTATAGCATACCCCA+TGG + chr6.4:59897808-59897827 None:intergenic 50.0%
! GAGGGTATAGCATACCCCAT+GGG + chr6.4:59897807-59897826 None:intergenic 50.0%
! GCAACATGGGCCAAAAGTGT+GGG - chr6.4:59899302-59899321 MS.gene042963:intron 50.0%
ACTTGGTCAGACACCTCCCA+TGG - chr6.4:59897788-59897807 MS.gene042963:intron 55.0%
CTTATGCTGGACCTGGAGGA+TGG - chr6.4:59899547-59899566 MS.gene042963:intron 55.0%
CTTGGTCAGACACCTCCCAT+GGG - chr6.4:59897789-59897808 MS.gene042963:intron 55.0%
GCATCTTATGCTGGACCTGG+AGG - chr6.4:59899543-59899562 MS.gene042963:intron 55.0%
GGTATAGCATACCCCATGGG+AGG + chr6.4:59897804-59897823 None:intergenic 55.0%
TGGGCATCTTATGCTGGACC+TGG - chr6.4:59899540-59899559 MS.gene042963:intron 55.0%
TTGGTCAGACACCTCCCATG+GGG - chr6.4:59897790-59897809 MS.gene042963:intron 55.0%
! GCTGATGCGATGGTGTCAAC+TGG - chr6.4:59898142-59898161 MS.gene042963:intron 55.0%
!! CAACTGGACTTGCTGCCCTA+GGG - chr6.4:59898158-59898177 MS.gene042963:intron 55.0%
!! TCAACTGGACTTGCTGCCCT+AGG - chr6.4:59898157-59898176 MS.gene042963:intron 55.0%
GCTGGACCTGGAGGATGGAA+TGG - chr6.4:59899552-59899571 MS.gene042963:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 59897651 59900643 59897651 ID=MS.gene042963
chr6.4 mRNA 59897651 59900643 59897651 ID=MS.gene042963.t1;Parent=MS.gene042963
chr6.4 exon 59900483 59900643 59900483 ID=MS.gene042963.t1.exon1;Parent=MS.gene042963.t1
chr6.4 CDS 59900483 59900643 59900483 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59900258 59900316 59900258 ID=MS.gene042963.t1.exon2;Parent=MS.gene042963.t1
chr6.4 CDS 59900258 59900316 59900258 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59900095 59900151 59900095 ID=MS.gene042963.t1.exon3;Parent=MS.gene042963.t1
chr6.4 CDS 59900095 59900151 59900095 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59899840 59899874 59899840 ID=MS.gene042963.t1.exon4;Parent=MS.gene042963.t1
chr6.4 CDS 59899840 59899874 59899840 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59899573 59899676 59899573 ID=MS.gene042963.t1.exon5;Parent=MS.gene042963.t1
chr6.4 CDS 59899573 59899676 59899573 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59899428 59899503 59899428 ID=MS.gene042963.t1.exon6;Parent=MS.gene042963.t1
chr6.4 CDS 59899428 59899503 59899428 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59899258 59899316 59899258 ID=MS.gene042963.t1.exon7;Parent=MS.gene042963.t1
chr6.4 CDS 59899258 59899316 59899258 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59899093 59899158 59899093 ID=MS.gene042963.t1.exon8;Parent=MS.gene042963.t1
chr6.4 CDS 59899093 59899158 59899093 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59898925 59899008 59898925 ID=MS.gene042963.t1.exon9;Parent=MS.gene042963.t1
chr6.4 CDS 59898925 59899008 59898925 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59898721 59898785 59898721 ID=MS.gene042963.t1.exon10;Parent=MS.gene042963.t1
chr6.4 CDS 59898721 59898785 59898721 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59898526 59898608 59898526 ID=MS.gene042963.t1.exon11;Parent=MS.gene042963.t1
chr6.4 CDS 59898526 59898608 59898526 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59898344 59898434 59898344 ID=MS.gene042963.t1.exon12;Parent=MS.gene042963.t1
chr6.4 CDS 59898344 59898434 59898344 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59898208 59898245 59898208 ID=MS.gene042963.t1.exon13;Parent=MS.gene042963.t1
chr6.4 CDS 59898208 59898245 59898208 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59897830 59897970 59897830 ID=MS.gene042963.t1.exon14;Parent=MS.gene042963.t1
chr6.4 CDS 59897830 59897970 59897830 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
chr6.4 exon 59897651 59897743 59897651 ID=MS.gene042963.t1.exon15;Parent=MS.gene042963.t1
chr6.4 CDS 59897651 59897743 59897651 ID=cds.MS.gene042963.t1;Parent=MS.gene042963.t1
Gene Sequence

>MS.gene042963

ATGGCTAGATTGATGGTGCTTGCATTATGTATCCTGGTGTTGCTGAATATTATTGCAAGTGTTCCATCATCTTCAGCTGCTCGATTATTAGGAAACAACAATGTAACCAAAATTAAGAGTTATATGTTGCAAAATGGACTTGGTCAGACACCTCCCATGGGGTATGCTATACCCTCTTTATTTGTCATTCTCATCCATTGTTCATTCAAATTCAAATATATCCATTTTTTCTTTTATGATTCTCACATAAAAATATACATAATTTTCTCCAATTAAATACATGAAAGTATATAGTTTCCTAATCAATTATATATTTATGATGTTCAGATGGAATAGTTGGAACCATTTCGGCTGTGATATAAATGAAAGTTTAATCCGAGATACAGGTATATATGTTTATTATCATTATTATGATGTTCCCTAAACTATTATTTTTACAATTTAAATATGTTTAATTCAATTGAACTAAACTATATTGATTTATCATTTCAGCTGATGCGATGGTGTCAACTGGACTTGCTGCCCTAGGGTACAAGTATATCAATTTAGGTAGGTGGCAAGTGGCAACTTCAATGATCATTACTGCTACCATACTTACTCTTTATTTTGTTGATGAGTGAATTTTTAGTTAATAATTTTTTAAAGTTTCTTGTAGAGAATTTTTTTAAATATTAATGTATTTCTTTATTATGTGTAAAATATTATATAAACATTTATTTATTTATGAAAATATATTTTAATAATATAAATTTGCATTTTTTTTCTTCAGATGATTGTTGGGCAGAACTTAATCGAGACTCACAGGTATTTAATAAATATCGTCTTTAAAAAAAATTCCATTGATTTGTATGTTTATTTTCTTCATGTACTTTTATGTGTCTATTTAAAAAAAAATAGGTTAAGTGAATTTAAATTAATAGATTAATATATCATAGTGTTTATAACTCTGACTAGTTAAATATGTTAGGGAAATATGGTTCCCAAGGCTTCAACGTTTCCTTCAGGAATTAAAGCTCTAGCTCATTATATTCATCGGAAAGGCTTGAAGTTGGGAATTTATTCAGATGCCGGGTATGAACATATTAAATTTTATTTGATGATCCTGAATATGATTGTTGATCACTTGCAATTGCTATGCAGAAATCAAACTTGTAGTAAACGTATGCCTGGATCACTAGGACATGAAATACAAGATGCCAAAACATTTGCTTCTTGGGTAAACCATATATACATACATTATTTGAAAATCATTTTTCGCTTTTATCAACATTATATTCTATTTATAATCTTATGTTGTTTACCAATATTGGTTCAAATTTTTCTTTAGGGAGTCGATTATTTGAAGTATGATAATTGTGAAAATAATGGTATAAGTGTTAGAGAAAGGTATTTAATTTATTTTCTTCAAATTCAAATAGTTATATCAACATACTTAATATTTTGTAAAAAATAGTACTTACTAGTTTCATATGTTGTGTAAATCAGGTATCCACCAATGAGTGAAGCCTTATTAAAATCGGGAAGGTCAATCTTCTTCTCTATGTGTGAATGGTGAGTTAGATTGGTGATAATGTTTCTCATACATAATTGATATTTCATTTTCTATTTCATTCTAATTTCTTATTTGAAACATAGGGGATGGGAAGATCCAGCAACATGGGCCAAAAGTGTGGGAAATAGTTGGAGAACAACAGGAGATATTGAAGATAACTGGAATAGGTAAAATTAATATGATAACTCACATTCTCACATTTTACATTGTTTCTTTTTGCGTAATAATTTAGCTTAGGAAAATAAATTTTCAATTCTTTTCTTCATTTTCTTATATTATGACCAACTAACTTTATTCCATCCCTAGCATGACTTCTATAATAGATGTAAATGACAAATGGGCATCTTATGCTGGACCTGGAGGATGGAATGGTAATTAACTAACCTCACTAGTAATTTTATGAATGTTAAATTTAAGATCATTACAAGTACATCAAACTTCAATATTAATTCCTCGTATGTGTCATTAATGTTTGGATATTAGATCCTGATATGCTCGAAGTTGGAAATGGAGGCATGACAACAGAGGAATATCGTGCCCATTTCAGCATTTGGGCATTAGCTAAGGTGCATGAAATAATTTTTATATACCTATTGTTGAGACAAAGTAATATGTCTTGAATTCGTTGTTTTTAACTATTTTACTCGGTTTAAATAGGCCCCTTTATTAGTTGGTTGTAATATTCAAGCAATGGATAATATCACGTATGAATTGATAAGCAACTCTGAAGTTATTGCAGTAAACCAAGGTAAGAAGACTTTCTTGAAAGATAAATGTATTAATTTCTTCAATAAAGAATGCTTTGAAACTTACACGTTTCTTGTGGTATTGCATATAAACTTGGAGTTCAGGGAAAGAAAGTCAAAAGCAACAATGATTTAGAGGTGACTTTATTATCTTTCCCTTTATATGGTGTTTAAGTTTGATTCCTCACAACTTATAATGATACTAAATTTGTTTAACTTTCAAATCAATACATGGATCTAGAGCAGCCCGTGATATATGCAAACTAATGCAACCTTATAATCAAATCATTTGTGTATTATATACATACATATGCATGTGAAAATTGTATCATAGTTCTTGCATACAACTTCTTACTAAAAATTCTATGGATATAGGTTTGGGCAGGTCCTCTCAATAATAACAAAGTAGCAGTGGTCTTATGGAATAGAAGTTCATCAAATGCAACGGTAACTGCATCCTGGTCAGATATAGGTCTGAAATCAGGAACTATAGTTGATGCAAGAGATTTATGGGAGGTAAGAGAGTTAGGCTCATTTTTCATTGTATTGTGCAAAACAATTTAAATTCATTTGGTTTTAATGGTGTGTAATGATTTTTGCAGCACTCAACACAATCATTGGTTTCTGGAGAAATCTCTGCTGAGTTAGATTCACATGCCTGTAAGATGTATGTTCTGACACCTAAAAGGAGTTAA

Protein sequence

>MS.gene042963.t1

MARLMVLALCILVLLNIIASVPSSSAARLLGNNNVTKIKSYMLQNGLGQTPPMGWNSWNHFGCDINESLIRDTADAMVSTGLAALGYKYINLDDCWAELNRDSQGNMVPKASTFPSGIKALAHYIHRKGLKLGIYSDAGNQTCSKRMPGSLGHEIQDAKTFASWGVDYLKYDNCENNGISVRERYPPMSEALLKSGRSIFFSMCEWGWEDPATWAKSVGNSWRTTGDIEDNWNSMTSIIDVNDKWASYAGPGGWNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLVGCNIQAMDNITYELISNSEVIAVNQVQGKKVKSNNDLEVWAGPLNNNKVAVVLWNRSSSNATVTASWSDIGLKSGTIVDARDLWEHSTQSLVSGEISAELDSHACKMYVLTPKRS