Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043037.t1 | XP_003605397.2 | 98.6 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 2.20E-245 | 857.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043037.t1 | Q9FKV1 | 72.6 | 449 | 98 | 3 | 1 | 443 | 3 | 432 | 3.8e-182 | 639.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043037.t1 | G7JKS8 | 98.6 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 1.6e-245 | 857.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043037 | MS.gene044005 | PPI |
| MS.gene84825 | MS.gene043037 | PPI |
| MS.gene043037 | MS.gene023903 | PPI |
| MS.gene043037 | MS.gene062762 | PPI |
| MS.gene24365 | MS.gene043037 | PPI |
| MS.gene019649 | MS.gene043037 | PPI |
| MS.gene043037 | MS.gene48483 | PPI |
| MS.gene043037 | MS.gene054624 | PPI |
| MS.gene043037 | MS.gene51840 | PPI |
| MS.gene044004 | MS.gene043037 | PPI |
| MS.gene013003 | MS.gene043037 | PPI |
| MS.gene57998 | MS.gene043037 | PPI |
| MS.gene043037 | MS.gene67151 | PPI |
| MS.gene043037 | MS.gene67091 | PPI |
| MS.gene019648 | MS.gene043037 | PPI |
| MS.gene067063 | MS.gene043037 | PPI |
| MS.gene056796 | MS.gene043037 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043037.t1 | MTR_4g030900 | 98.646 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 0.0 | 882 |
| MS.gene043037.t1 | MTR_7g077830 | 37.387 | 444 | 248 | 6 | 2 | 443 | 119 | 534 | 4.49e-92 | 288 |
| MS.gene043037.t1 | MTR_8g030600 | 36.261 | 444 | 253 | 5 | 2 | 443 | 173 | 588 | 1.96e-89 | 283 |
| MS.gene043037.t1 | MTR_3g463080 | 37.472 | 443 | 249 | 7 | 2 | 443 | 101 | 516 | 1.72e-86 | 273 |
| MS.gene043037.t1 | MTR_8g030600 | 35.549 | 346 | 204 | 4 | 2 | 345 | 173 | 501 | 2.28e-64 | 215 |
| MS.gene043037.t1 | MTR_4g116030 | 32.287 | 446 | 268 | 12 | 2 | 439 | 105 | 524 | 1.58e-62 | 211 |
| MS.gene043037.t1 | MTR_7g066780 | 30.839 | 441 | 278 | 6 | 4 | 442 | 91 | 506 | 1.12e-60 | 206 |
| MS.gene043037.t1 | MTR_5g069630 | 27.955 | 440 | 293 | 7 | 7 | 443 | 97 | 515 | 7.70e-51 | 180 |
| MS.gene043037.t1 | MTR_2g027710 | 41.818 | 165 | 95 | 1 | 231 | 395 | 71 | 234 | 1.74e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043037.t1 | AT5G44370 | 72.009 | 443 | 111 | 1 | 1 | 443 | 3 | 432 | 0.0 | 649 |
| MS.gene043037.t1 | AT4G00370 | 35.586 | 444 | 256 | 5 | 2 | 443 | 126 | 541 | 1.88e-88 | 279 |
| MS.gene043037.t1 | AT2G29650 | 35.440 | 443 | 258 | 6 | 2 | 443 | 97 | 512 | 3.63e-85 | 270 |
| MS.gene043037.t1 | AT2G29650 | 35.545 | 422 | 242 | 7 | 24 | 443 | 7 | 400 | 7.87e-80 | 253 |
| MS.gene043037.t1 | AT2G29650 | 35.492 | 417 | 239 | 7 | 29 | 443 | 2 | 390 | 1.93e-78 | 249 |
| MS.gene043037.t1 | AT5G20380 | 31.390 | 446 | 268 | 11 | 2 | 439 | 93 | 508 | 6.37e-61 | 207 |
| MS.gene043037.t1 | AT5G20380 | 31.390 | 446 | 268 | 11 | 2 | 439 | 145 | 560 | 2.54e-60 | 206 |
| MS.gene043037.t1 | AT2G38060 | 29.864 | 442 | 283 | 7 | 4 | 442 | 95 | 512 | 2.84e-58 | 199 |
| MS.gene043037.t1 | AT2G29650 | 35.220 | 318 | 189 | 5 | 2 | 318 | 97 | 398 | 1.28e-56 | 192 |
| MS.gene043037.t1 | AT3G46980 | 29.478 | 441 | 286 | 8 | 7 | 443 | 111 | 530 | 9.04e-55 | 191 |
| MS.gene043037.t1 | AT3G46980 | 29.478 | 441 | 286 | 8 | 7 | 443 | 111 | 530 | 9.70e-55 | 191 |
| MS.gene043037.t1 | AT3G46980 | 29.478 | 441 | 286 | 8 | 7 | 443 | 159 | 578 | 3.11e-54 | 190 |
| MS.gene043037.t1 | AT2G38060 | 29.443 | 377 | 249 | 6 | 4 | 377 | 95 | 457 | 1.75e-48 | 174 |
| MS.gene043037.t1 | AT3G46980 | 30.411 | 365 | 229 | 8 | 83 | 443 | 7 | 350 | 5.79e-45 | 160 |
| MS.gene043037.t1 | AT3G46980 | 30.411 | 365 | 229 | 8 | 83 | 443 | 7 | 350 | 5.79e-45 | 160 |
| MS.gene043037.t1 | AT3G46980 | 30.411 | 365 | 229 | 8 | 83 | 443 | 7 | 350 | 6.41e-45 | 160 |
| MS.gene043037.t1 | AT3G46980 | 30.411 | 365 | 229 | 8 | 83 | 443 | 7 | 350 | 6.41e-45 | 160 |
| MS.gene043037.t1 | AT3G46980 | 28.431 | 306 | 195 | 7 | 141 | 443 | 2 | 286 | 6.66e-29 | 115 |
Find 99 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACCAGCCTCCAACTTTC+TGG | 0.167095 | 4.2:-74037631 | None:intergenic |
| CCTAGTTTGGTTAAGTTTAA+AGG | 0.174452 | 4.2:+74036863 | MS.gene043037:CDS |
| ATGTATCTTGGTGCTGCTTT+TGG | 0.225181 | 4.2:+74036827 | MS.gene043037:CDS |
| AACGAGCAGTGACAAGAATT+AGG | 0.260054 | 4.2:-74036694 | None:intergenic |
| ATTGTTGGTGTTGATCTTAC+TGG | 0.272404 | 4.2:+74037562 | MS.gene043037:CDS |
| TTCAAATACTGCTGGTACTT+TGG | 0.293989 | 4.2:+74037534 | MS.gene043037:CDS |
| CGAAATAACCGCCGGGAACT+TGG | 0.309025 | 4.2:-74036580 | None:intergenic |
| GTCACTGCTCGTTTACTTGT+TGG | 0.315606 | 4.2:+74036704 | MS.gene043037:CDS |
| TTTGACTAGTTTACCTGTTT+GGG | 0.316518 | 4.2:+74037108 | MS.gene043037:CDS |
| AATGTTGTTTCTACCTAGTT+TGG | 0.318339 | 4.2:+74036850 | MS.gene043037:CDS |
| CTTTGTTGATTGATTGATTC+CGG | 0.319513 | 4.2:-74036516 | None:intergenic |
| GGCTGCCAAGGCGTCTGATT+TGG | 0.324835 | 4.2:+74037597 | MS.gene043037:CDS |
| TAAGTTAAGTCTTCATGAAA+TGG | 0.325737 | 4.2:+74037213 | MS.gene043037:CDS |
| AACACAAACATATTCAAATA+AGG | 0.331068 | 4.2:-74037253 | None:intergenic |
| TCACTGCTCGTTTACTTGTT+GGG | 0.333640 | 4.2:+74036705 | MS.gene043037:CDS |
| CTATCAATCTTCTTATTAAC+CGG | 0.341138 | 4.2:-74037001 | None:intergenic |
| GAAGATTGATAGACGGGTTT+CGG | 0.343350 | 4.2:+74037012 | MS.gene043037:CDS |
| TCCGGCAGCGTCGGCGGCGA+CGG | 0.343534 | 4.2:-74036498 | None:intergenic |
| TGAATGTAAGGAGGACTATT+AGG | 0.347927 | 4.2:-74036424 | None:intergenic |
| CTTTGTATGTGTTGATGAAT+TGG | 0.350434 | 4.2:+74037164 | MS.gene043037:CDS |
| GCACCGGAAGCCGAACTCTT+AGG | 0.365889 | 4.2:-74036962 | None:intergenic |
| TACGCTTGTTCCCAAGTTCC+CGG | 0.371349 | 4.2:+74036569 | MS.gene043037:CDS |
| GGTACTTTGGCTGGTATTGT+TGG | 0.376276 | 4.2:+74037547 | MS.gene043037:CDS |
| TGCCGGTGAATCGTTATTGC+CGG | 0.387504 | 4.2:+74036982 | MS.gene043037:CDS |
| TAGACGGGTTTCGGATCTTA+AGG | 0.394543 | 4.2:+74037021 | MS.gene043037:CDS |
| GGTTATTTCGCCCAGAAAAT+CGG | 0.399582 | 4.2:+74036593 | MS.gene043037:CDS |
| ACGAGCAGTGACAAGAATTA+GGG | 0.402524 | 4.2:-74036693 | None:intergenic |
| AAACAGACCTAGATCTTTCA+TGG | 0.407378 | 4.2:-74036787 | None:intergenic |
| GGGTTTCGGATCTTAAGGTT+GGG | 0.411547 | 4.2:+74037026 | MS.gene043037:CDS |
| AAGAGTTCGGCTTCCGGTGC+CGG | 0.424410 | 4.2:+74036965 | MS.gene043037:CDS |
| GATCCTAAGAGTTCGGCTTC+CGG | 0.428196 | 4.2:+74036959 | MS.gene043037:CDS |
| AATACTGCTGGTACTTTGGC+TGG | 0.428585 | 4.2:+74037538 | MS.gene043037:CDS |
| GCTAAAACAGTATGAATTGA+AGG | 0.438231 | 4.2:-74036749 | None:intergenic |
| ATCTTTCGACTCCAGAAAGT+TGG | 0.441510 | 4.2:+74037620 | MS.gene043037:CDS |
| ACTACTAGTGGAATGTATCT+TGG | 0.446805 | 4.2:+74036815 | MS.gene043037:CDS |
| TTTACCTGTTTGGGCTATTG+TGG | 0.448341 | 4.2:+74037117 | MS.gene043037:CDS |
| CACATGTGAAAGACCATAAG+AGG | 0.450942 | 4.2:-74036643 | None:intergenic |
| AAGTTAAGTCTTCATGAAAT+GGG | 0.453234 | 4.2:+74037214 | MS.gene043037:CDS |
| TAGTTCTGATCCTAAGAGTT+CGG | 0.454552 | 4.2:+74036952 | MS.gene043037:CDS |
| CCTTTAAACTTAACCAAACT+AGG | 0.454681 | 4.2:-74036863 | None:intergenic |
| CGGGTTTCGGATCTTAAGGT+TGG | 0.458137 | 4.2:+74037025 | MS.gene043037:CDS |
| AAGTGGGGTTGGAGTTCCTT+GGG | 0.464073 | 4.2:+74037078 | MS.gene043037:CDS |
| TTACTTGTTGGGGTTGCTCA+AGG | 0.469936 | 4.2:+74036716 | MS.gene043037:CDS |
| GGGGTGAGGGGAAGAAAAGT+GGG | 0.473966 | 4.2:+74037062 | MS.gene043037:CDS |
| TAATAAGAAGATTGATAGAC+GGG | 0.476333 | 4.2:+74037006 | MS.gene043037:CDS |
| TCCCACCCCATGAAAGATCT+AGG | 0.476934 | 4.2:+74036780 | MS.gene043037:CDS |
| TCTGTTTCTTTGACTACTAG+TGG | 0.480634 | 4.2:+74036803 | MS.gene043037:CDS |
| CACTGCTCGTTTACTTGTTG+GGG | 0.481240 | 4.2:+74036706 | MS.gene043037:CDS |
| AGGACTATTAGGTAACGAAC+TGG | 0.485563 | 4.2:-74036413 | None:intergenic |
| AAAGTGGGGTTGGAGTTCCT+TGG | 0.494560 | 4.2:+74037077 | MS.gene043037:CDS |
| GACTCCAGAAAGTTGGAGGC+TGG | 0.503695 | 4.2:+74037627 | MS.gene043037:CDS |
| GAAATAACCGCCGGGAACTT+GGG | 0.505954 | 4.2:-74036579 | None:intergenic |
| GATGTTGCTCCGAGATATGC+TGG | 0.507261 | 4.2:+74037496 | MS.gene043037:CDS |
| GGTTTCGGATCTTAAGGTTG+GGG | 0.509229 | 4.2:+74037027 | MS.gene043037:CDS |
| CAATAACGATTCACCGGCAC+CGG | 0.510862 | 4.2:-74036978 | None:intergenic |
| TTTCGACTCCAGAAAGTTGG+AGG | 0.514699 | 4.2:+74037623 | MS.gene043037:CDS |
| GAGGGGAAGAAAAGTGGGGT+TGG | 0.515269 | 4.2:+74037067 | MS.gene043037:CDS |
| ACCGTCGCCGCCGACGCTGC+CGG | 0.517096 | 4.2:+74036497 | MS.gene043037:CDS |
| TTAACCACAATAGCCCAAAC+AGG | 0.520301 | 4.2:-74037121 | None:intergenic |
| AGCCCTAATTCAAAATATGT+TGG | 0.520611 | 4.2:-74037190 | None:intergenic |
| ACCTAGATCTTTCATGGGGT+GGG | 0.521976 | 4.2:-74036781 | None:intergenic |
| CGGATTATTTGATTACGAGA+AGG | 0.522309 | 4.2:+74037299 | MS.gene043037:CDS |
| GAAGGGTTATGTCGGTGACT+AGG | 0.528281 | 4.2:+74037317 | MS.gene043037:CDS |
| GGATTATTTGATTACGAGAA+GGG | 0.530464 | 4.2:+74037300 | MS.gene043037:CDS |
| GACCTAGATCTTTCATGGGG+TGG | 0.537966 | 4.2:-74036782 | None:intergenic |
| ATCACAATTCCAGCATATCT+CGG | 0.539201 | 4.2:-74037505 | None:intergenic |
| TTGTTGGTGTTGATCTTACT+GGG | 0.540874 | 4.2:+74037563 | MS.gene043037:CDS |
| AAGATCCAAATCAGACGCCT+TGG | 0.548033 | 4.2:-74037602 | None:intergenic |
| ACCATAAGAGGAATGAAAAG+AGG | 0.550822 | 4.2:-74036631 | None:intergenic |
| ATTGATTCCGGCAGCGTCGG+CGG | 0.552249 | 4.2:-74036504 | None:intergenic |
| AACCGGCAATAACGATTCAC+CGG | 0.554785 | 4.2:-74036984 | None:intergenic |
| CTGATGTGCAGATGAATGTA+AGG | 0.554937 | 4.2:-74036436 | None:intergenic |
| TGGATTTGCAGTGAATCATA+TGG | 0.556660 | 4.2:+74037474 | MS.gene043037:CDS |
| ATTCTGTCCACATTCTACTA+CGG | 0.557355 | 4.2:+74036545 | MS.gene043037:CDS |
| GGAATCAATCAATCAACAAA+GGG | 0.559790 | 4.2:+74036518 | MS.gene043037:CDS |
| GGCGGCGACGGTGTATGCGA+TGG | 0.559813 | 4.2:-74036486 | None:intergenic |
| TTGATTGATTCCGGCAGCGT+CGG | 0.564736 | 4.2:-74036507 | None:intergenic |
| AACAGACCTAGATCTTTCAT+GGG | 0.565307 | 4.2:-74036786 | None:intergenic |
| GAAATTACTTGAGGCTGCCA+AGG | 0.567990 | 4.2:+74037585 | MS.gene043037:CDS |
| AGATATGCTGGAATTGTGAT+GGG | 0.572052 | 4.2:+74037508 | MS.gene043037:CDS |
| CGGAATCAATCAATCAACAA+AGG | 0.577810 | 4.2:+74036517 | MS.gene043037:CDS |
| GGGTGAGGGGAAGAAAAGTG+GGG | 0.577922 | 4.2:+74037063 | MS.gene043037:CDS |
| GAGATATGCTGGAATTGTGA+TGG | 0.579577 | 4.2:+74037507 | MS.gene043037:CDS |
| GAATATTGGTGGTGTTGTTG+CGG | 0.581435 | 4.2:+74037279 | MS.gene043037:CDS |
| TTAATAAGAAGATTGATAGA+CGG | 0.582928 | 4.2:+74037005 | MS.gene043037:CDS |
| TTCTGGGCGAAATAACCGCC+GGG | 0.584077 | 4.2:-74036587 | None:intergenic |
| GATTACGAGAAGGGTTATGT+CGG | 0.589669 | 4.2:+74037309 | MS.gene043037:CDS |
| TCTTACTGGGAAATTACTTG+AGG | 0.602899 | 4.2:+74037576 | MS.gene043037:CDS |
| CTAGTCAAAATCTTCACCCA+AGG | 0.613823 | 4.2:-74037094 | None:intergenic |
| TTTCTGGGCGAAATAACCGC+CGG | 0.614744 | 4.2:-74036588 | None:intergenic |
| CCACCCGAAGTTCTAAAACT+CGG | 0.621204 | 4.2:-74037400 | None:intergenic |
| AGCGTAACCGTAGTAGAATG+TGG | 0.642404 | 4.2:-74036552 | None:intergenic |
| GTCTGTTACATAGAACGCGT+CGG | 0.646309 | 4.2:+74036458 | MS.gene043037:CDS |
| TATTTCGCCCAGAAAATCGG+CGG | 0.696323 | 4.2:+74036596 | MS.gene043037:CDS |
| GATATGCTGGAATTGTGATG+GGG | 0.698431 | 4.2:+74037509 | MS.gene043037:CDS |
| ATATGCTGGAATTGTGATGG+GGG | 0.729769 | 4.2:+74037510 | MS.gene043037:CDS |
| ATGTGCAGATGAATGTAAGG+AGG | 0.739362 | 4.2:-74036433 | None:intergenic |
| ACAGACCTAGATCTTTCATG+GGG | 0.746155 | 4.2:-74036785 | None:intergenic |
| GCTTGTTCCCAAGTTCCCGG+CGG | 0.780032 | 4.2:+74036572 | MS.gene043037:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACACAAACATATTCAAATA+AGG | - | chr4.2:74037256-74037275 | None:intergenic | 20.0% |
| !! | TTAATAAGAAGATTGATAGA+CGG | + | chr4.2:74037005-74037024 | MS.gene043037:CDS | 20.0% |
| !!! | TACCAACATATTTTGAATTA+GGG | + | chr4.2:74037188-74037207 | MS.gene043037:CDS | 20.0% |
| !!! | TTACCAACATATTTTGAATT+AGG | + | chr4.2:74037187-74037206 | MS.gene043037:CDS | 20.0% |
| ! | AAGTTAAGTCTTCATGAAAT+GGG | + | chr4.2:74037214-74037233 | MS.gene043037:CDS | 25.0% |
| ! | CTATCAATCTTCTTATTAAC+CGG | - | chr4.2:74037004-74037023 | None:intergenic | 25.0% |
| ! | TAAGTTAAGTCTTCATGAAA+TGG | + | chr4.2:74037213-74037232 | MS.gene043037:CDS | 25.0% |
| ! | TAATAAGAAGATTGATAGAC+GGG | + | chr4.2:74037006-74037025 | MS.gene043037:CDS | 25.0% |
| !! | ATGTTTGTGTTTTCGAATAT+TGG | + | chr4.2:74037265-74037284 | MS.gene043037:CDS | 25.0% |
| !!! | TTTGGTGTTTTATTTGGTTT+AGG | + | chr4.2:74036927-74036946 | MS.gene043037:CDS | 25.0% |
| AGCCCTAATTCAAAATATGT+TGG | - | chr4.2:74037193-74037212 | None:intergenic | 30.0% | |
| CCTAGTTTGGTTAAGTTTAA+AGG | + | chr4.2:74036863-74036882 | MS.gene043037:CDS | 30.0% | |
| CCTTTAAACTTAACCAAACT+AGG | - | chr4.2:74036866-74036885 | None:intergenic | 30.0% | |
| CTAAAAACACATAAAAGTCC+CGG | - | chr4.2:74037664-74037683 | None:intergenic | 30.0% | |
| GCTAAAACAGTATGAATTGA+AGG | - | chr4.2:74036752-74036771 | None:intergenic | 30.0% | |
| GGAATCAATCAATCAACAAA+GGG | + | chr4.2:74036518-74036537 | MS.gene043037:CDS | 30.0% | |
| GGATTATTTGATTACGAGAA+GGG | + | chr4.2:74037300-74037319 | MS.gene043037:CDS | 30.0% | |
| ! | AGAAAGTTTTTGAATACGGT+TGG | + | chr4.2:74037343-74037362 | MS.gene043037:CDS | 30.0% |
| ! | CTTTGTATGTGTTGATGAAT+TGG | + | chr4.2:74037164-74037183 | MS.gene043037:CDS | 30.0% |
| ! | CTTTGTTGATTGATTGATTC+CGG | - | chr4.2:74036519-74036538 | None:intergenic | 30.0% |
| ! | GAAAGTTTTTGAATACGGTT+GGG | + | chr4.2:74037344-74037363 | MS.gene043037:CDS | 30.0% |
| ! | GACGAGAAAGTTTTTGAATA+CGG | + | chr4.2:74037339-74037358 | MS.gene043037:CDS | 30.0% |
| ! | TTTGTGTTTTCGAATATTGG+TGG | + | chr4.2:74037268-74037287 | MS.gene043037:CDS | 30.0% |
| !! | AATGTTGTTTCTACCTAGTT+TGG | + | chr4.2:74036850-74036869 | MS.gene043037:CDS | 30.0% |
| !! | TTTGACTAGTTTACCTGTTT+GGG | + | chr4.2:74037108-74037127 | MS.gene043037:CDS | 30.0% |
| !!! | ACAAGAATTAGGGTTTTGTT+TGG | - | chr4.2:74036686-74036705 | None:intergenic | 30.0% |
| !!! | AGAGTTTTTTAGGGTTTGTT+TGG | + | chr4.2:74036909-74036928 | MS.gene043037:CDS | 30.0% |
| !!! | GGTTTGTTTGGTGTTTTATT+TGG | + | chr4.2:74036921-74036940 | MS.gene043037:CDS | 30.0% |
| !!! | GTATTCTTGTTGTTTTCTAC+CGG | + | chr4.2:74037691-74037710 | MS.gene043037:CDS | 30.0% |
| !!! | TATTCTTGTTGTTTTCTACC+GGG | + | chr4.2:74037692-74037711 | MS.gene043037:CDS | 30.0% |
| !!! | TCATACTGTTTTAGCTCAAT+GGG | + | chr4.2:74036757-74036776 | MS.gene043037:CDS | 30.0% |
| !!! | TTCATACTGTTTTAGCTCAA+TGG | + | chr4.2:74036756-74036775 | MS.gene043037:CDS | 30.0% |
| !!! | TTGTTGCTGAGAGTTTTTTA+GGG | + | chr4.2:74036900-74036919 | MS.gene043037:CDS | 30.0% |
| !!! | TTTATGTGTTTTTAGTTCGC+TGG | + | chr4.2:74037669-74037688 | MS.gene043037:CDS | 30.0% |
| !!! | TTTGTTGCTGAGAGTTTTTT+AGG | + | chr4.2:74036899-74036918 | MS.gene043037:CDS | 30.0% |
| !!! | TTTTGACTAGTTTACCTGTT+TGG | + | chr4.2:74037107-74037126 | MS.gene043037:CDS | 30.0% |
| AAACAGACCTAGATCTTTCA+TGG | - | chr4.2:74036790-74036809 | None:intergenic | 35.0% | |
| AACAGACCTAGATCTTTCAT+GGG | - | chr4.2:74036789-74036808 | None:intergenic | 35.0% | |
| ACCATAAGAGGAATGAAAAG+AGG | - | chr4.2:74036634-74036653 | None:intergenic | 35.0% | |
| ACTACTAGTGGAATGTATCT+TGG | + | chr4.2:74036815-74036834 | MS.gene043037:CDS | 35.0% | |
| AGATATGCTGGAATTGTGAT+GGG | + | chr4.2:74037508-74037527 | MS.gene043037:CDS | 35.0% | |
| ATCACAATTCCAGCATATCT+CGG | - | chr4.2:74037508-74037527 | None:intergenic | 35.0% | |
| ATTCTGTCCACATTCTACTA+CGG | + | chr4.2:74036545-74036564 | MS.gene043037:CDS | 35.0% | |
| CGGAATCAATCAATCAACAA+AGG | + | chr4.2:74036517-74036536 | MS.gene043037:CDS | 35.0% | |
| CGGATTATTTGATTACGAGA+AGG | + | chr4.2:74037299-74037318 | MS.gene043037:CDS | 35.0% | |
| TCAGCAACAAAAACAGATTG+AGG | - | chr4.2:74036890-74036909 | None:intergenic | 35.0% | |
| TCTTACTGGGAAATTACTTG+AGG | + | chr4.2:74037576-74037595 | MS.gene043037:CDS | 35.0% | |
| TGAATGTAAGGAGGACTATT+AGG | - | chr4.2:74036427-74036446 | None:intergenic | 35.0% | |
| TGGATTTGCAGTGAATCATA+TGG | + | chr4.2:74037474-74037493 | MS.gene043037:CDS | 35.0% | |
| TTCAAATACTGCTGGTACTT+TGG | + | chr4.2:74037534-74037553 | MS.gene043037:CDS | 35.0% | |
| ! | TCCTCTTTTCATTCCTCTTA+TGG | + | chr4.2:74036630-74036649 | MS.gene043037:CDS | 35.0% |
| ! | TCTGTTTCTTTGACTACTAG+TGG | + | chr4.2:74036803-74036822 | MS.gene043037:CDS | 35.0% |
| !! | ATTGTTGGTGTTGATCTTAC+TGG | + | chr4.2:74037562-74037581 | MS.gene043037:CDS | 35.0% |
| !! | TAGTTCTGATCCTAAGAGTT+CGG | + | chr4.2:74036952-74036971 | MS.gene043037:CDS | 35.0% |
| !! | TTGTTGGTGTTGATCTTACT+GGG | + | chr4.2:74037563-74037582 | MS.gene043037:CDS | 35.0% |
| !!! | AGGGTTTTGTTTGGATCTAA+TGG | - | chr4.2:74036677-74036696 | None:intergenic | 35.0% |
| !!! | ATACCGAGTTTTAGAACTTC+GGG | + | chr4.2:74037397-74037416 | MS.gene043037:CDS | 35.0% |
| !!! | ATTCTTGTTGTTTTCTACCG+GGG | + | chr4.2:74037693-74037712 | MS.gene043037:CDS | 35.0% |
| !!! | GATACCGAGTTTTAGAACTT+CGG | + | chr4.2:74037396-74037415 | MS.gene043037:CDS | 35.0% |
| AACGAGCAGTGACAAGAATT+AGG | - | chr4.2:74036697-74036716 | None:intergenic | 40.0% | |
| AAGGTTGGGGTTGAGAAAAA+TGG | + | chr4.2:74037040-74037059 | MS.gene043037:CDS | 40.0% | |
| ACAGACCTAGATCTTTCATG+GGG | - | chr4.2:74036788-74036807 | None:intergenic | 40.0% | |
| ACGAGCAGTGACAAGAATTA+GGG | - | chr4.2:74036696-74036715 | None:intergenic | 40.0% | |
| AGGACTATTAGGTAACGAAC+TGG | - | chr4.2:74036416-74036435 | None:intergenic | 40.0% | |
| AGGTTGGGGTTGAGAAAAAT+GGG | + | chr4.2:74037041-74037060 | MS.gene043037:CDS | 40.0% | |
| ATATGCTGGAATTGTGATGG+GGG | + | chr4.2:74037510-74037529 | MS.gene043037:CDS | 40.0% | |
| ATCTTTCGACTCCAGAAAGT+TGG | + | chr4.2:74037620-74037639 | MS.gene043037:CDS | 40.0% | |
| ATGTGCAGATGAATGTAAGG+AGG | - | chr4.2:74036436-74036455 | None:intergenic | 40.0% | |
| CACATGTGAAAGACCATAAG+AGG | - | chr4.2:74036646-74036665 | None:intergenic | 40.0% | |
| CTAGTCAAAATCTTCACCCA+AGG | - | chr4.2:74037097-74037116 | None:intergenic | 40.0% | |
| CTGATGTGCAGATGAATGTA+AGG | - | chr4.2:74036439-74036458 | None:intergenic | 40.0% | |
| GAGATATGCTGGAATTGTGA+TGG | + | chr4.2:74037507-74037526 | MS.gene043037:CDS | 40.0% | |
| GATATGCTGGAATTGTGATG+GGG | + | chr4.2:74037509-74037528 | MS.gene043037:CDS | 40.0% | |
| GATTACGAGAAGGGTTATGT+CGG | + | chr4.2:74037309-74037328 | MS.gene043037:CDS | 40.0% | |
| TCAATCAAAAATCCTCTCCC+CGG | - | chr4.2:74037713-74037732 | None:intergenic | 40.0% | |
| TCACTGCTCGTTTACTTGTT+GGG | + | chr4.2:74036705-74036724 | MS.gene043037:CDS | 40.0% | |
| TTAACCACAATAGCCCAAAC+AGG | - | chr4.2:74037124-74037143 | None:intergenic | 40.0% | |
| TTTACCTGTTTGGGCTATTG+TGG | + | chr4.2:74037117-74037136 | MS.gene043037:CDS | 40.0% | |
| ! | GAAGATTGATAGACGGGTTT+CGG | + | chr4.2:74037012-74037031 | MS.gene043037:CDS | 40.0% |
| ! | GGTTATTTCGCCCAGAAAAT+CGG | + | chr4.2:74036593-74036612 | MS.gene043037:CDS | 40.0% |
| !! | GAATATTGGTGGTGTTGTTG+CGG | + | chr4.2:74037279-74037298 | MS.gene043037:CDS | 40.0% |
| !!! | ATGTATCTTGGTGCTGCTTT+TGG | + | chr4.2:74036827-74036846 | MS.gene043037:CDS | 40.0% |
| !!! | TGGTGCTGTGTTTTGTTCTT+CGG | + | chr4.2:74037420-74037439 | MS.gene043037:CDS | 40.0% |
| AACCGGCAATAACGATTCAC+CGG | - | chr4.2:74036987-74037006 | None:intergenic | 45.0% | |
| AAGATCCAAATCAGACGCCT+TGG | - | chr4.2:74037605-74037624 | None:intergenic | 45.0% | |
| AATACTGCTGGTACTTTGGC+TGG | + | chr4.2:74037538-74037557 | MS.gene043037:CDS | 45.0% | |
| ACCTAGATCTTTCATGGGGT+GGG | - | chr4.2:74036784-74036803 | None:intergenic | 45.0% | |
| AGCGTAACCGTAGTAGAATG+TGG | - | chr4.2:74036555-74036574 | None:intergenic | 45.0% | |
| ATGGGGGTTTCAAATACTGC+TGG | + | chr4.2:74037526-74037545 | MS.gene043037:CDS | 45.0% | |
| GAAATTACTTGAGGCTGCCA+AGG | + | chr4.2:74037585-74037604 | MS.gene043037:CDS | 45.0% | |
| GGGTTTCGGATCTTAAGGTT+GGG | + | chr4.2:74037026-74037045 | MS.gene043037:CDS | 45.0% | |
| GGTACTTTGGCTGGTATTGT+TGG | + | chr4.2:74037547-74037566 | MS.gene043037:CDS | 45.0% | |
| GGTTGGGGTTGAGAAAAATG+GGG | + | chr4.2:74037042-74037061 | MS.gene043037:CDS | 45.0% | |
| GGTTTCGGATCTTAAGGTTG+GGG | + | chr4.2:74037027-74037046 | MS.gene043037:CDS | 45.0% | |
| GTCACTGCTCGTTTACTTGT+TGG | + | chr4.2:74036704-74036723 | MS.gene043037:CDS | 45.0% | |
| GTCTGTTACATAGAACGCGT+CGG | + | chr4.2:74036458-74036477 | MS.gene043037:CDS | 45.0% | |
| GTTGAGAAAAATGGGGGTGA+GGG | + | chr4.2:74037049-74037068 | MS.gene043037:CDS | 45.0% | |
| GTTGGGGTTGAGAAAAATGG+GGG | + | chr4.2:74037043-74037062 | MS.gene043037:CDS | 45.0% | |
| TATTTCGCCCAGAAAATCGG+CGG | + | chr4.2:74036596-74036615 | MS.gene043037:CDS | 45.0% | |
| TTGAGAAAAATGGGGGTGAG+GGG | + | chr4.2:74037050-74037069 | MS.gene043037:CDS | 45.0% | |
| TTTCGACTCCAGAAAGTTGG+AGG | + | chr4.2:74037623-74037642 | MS.gene043037:CDS | 45.0% | |
| ! | AGGCTGGTGTTTTTCATTCC+GGG | + | chr4.2:74037643-74037662 | MS.gene043037:CDS | 45.0% |
| ! | CACTGCTCGTTTACTTGTTG+GGG | + | chr4.2:74036706-74036725 | MS.gene043037:CDS | 45.0% |
| ! | GAGGCTGGTGTTTTTCATTC+CGG | + | chr4.2:74037642-74037661 | MS.gene043037:CDS | 45.0% |
| ! | TAGACGGGTTTCGGATCTTA+AGG | + | chr4.2:74037021-74037040 | MS.gene043037:CDS | 45.0% |
| ! | TTACTTGTTGGGGTTGCTCA+AGG | + | chr4.2:74036716-74036735 | MS.gene043037:CDS | 45.0% |
| !! | CCACCCGAAGTTCTAAAACT+CGG | - | chr4.2:74037403-74037422 | None:intergenic | 45.0% |
| !! | TGCTGTGTTTTGTTCTTCGG+TGG | + | chr4.2:74037423-74037442 | MS.gene043037:CDS | 45.0% |
| !! | TGGCTTTTTAGCGCTTGGTA+GGG | + | chr4.2:74037450-74037469 | MS.gene043037:CDS | 45.0% |
| !! | TTGGCTTTTTAGCGCTTGGT+AGG | + | chr4.2:74037449-74037468 | MS.gene043037:CDS | 45.0% |
| !!! | TTTACGACCGCCGATTTTCT+GGG | - | chr4.2:74036606-74036625 | None:intergenic | 45.0% |
| !!! | TTTTACGACCGCCGATTTTC+TGG | - | chr4.2:74036607-74036626 | None:intergenic | 45.0% |
| AAAGTGGGGTTGGAGTTCCT+TGG | + | chr4.2:74037077-74037096 | MS.gene043037:CDS | 50.0% | |
| AACACCAGCCTCCAACTTTC+TGG | - | chr4.2:74037634-74037653 | None:intergenic | 50.0% | |
| AAGTGGGGTTGGAGTTCCTT+GGG | + | chr4.2:74037078-74037097 | MS.gene043037:CDS | 50.0% | |
| CAATAACGATTCACCGGCAC+CGG | - | chr4.2:74036981-74037000 | None:intergenic | 50.0% | |
| CGGGTTTCGGATCTTAAGGT+TGG | + | chr4.2:74037025-74037044 | MS.gene043037:CDS | 50.0% | |
| GAAATAACCGCCGGGAACTT+GGG | - | chr4.2:74036582-74036601 | None:intergenic | 50.0% | |
| GAAGGGTTATGTCGGTGACT+AGG | + | chr4.2:74037317-74037336 | MS.gene043037:CDS | 50.0% | |
| GACCTAGATCTTTCATGGGG+TGG | - | chr4.2:74036785-74036804 | None:intergenic | 50.0% | |
| GATCCTAAGAGTTCGGCTTC+CGG | + | chr4.2:74036959-74036978 | MS.gene043037:CDS | 50.0% | |
| GATGTTGCTCCGAGATATGC+TGG | + | chr4.2:74037496-74037515 | MS.gene043037:CDS | 50.0% | |
| GGTTGAGAAAAATGGGGGTG+AGG | + | chr4.2:74037048-74037067 | MS.gene043037:CDS | 50.0% | |
| TACGCTTGTTCCCAAGTTCC+CGG | + | chr4.2:74036569-74036588 | MS.gene043037:CDS | 50.0% | |
| TCCCACCCCATGAAAGATCT+AGG | + | chr4.2:74036780-74036799 | MS.gene043037:CDS | 50.0% | |
| TGCCGGTGAATCGTTATTGC+CGG | + | chr4.2:74036982-74037001 | MS.gene043037:CDS | 50.0% | |
| TTTCTGGGCGAAATAACCGC+CGG | - | chr4.2:74036591-74036610 | None:intergenic | 50.0% | |
| ! | TTGATTGATTCCGGCAGCGT+CGG | - | chr4.2:74036510-74036529 | None:intergenic | 50.0% |
| ! | TTTTGTTCTTCGGTGGCGCT+TGG | + | chr4.2:74037430-74037449 | MS.gene043037:CDS | 50.0% |
| !! | TTTTTAGCGCTTGGTAGGGC+TGG | + | chr4.2:74037454-74037473 | MS.gene043037:CDS | 50.0% |
| !!! | CCGAGTTTTAGAACTTCGGG+TGG | + | chr4.2:74037400-74037419 | MS.gene043037:CDS | 50.0% |
| !!! | TGTTGTTTTCTACCGGGGAG+AGG | + | chr4.2:74037698-74037717 | MS.gene043037:CDS | 50.0% |
| CGAAATAACCGCCGGGAACT+TGG | - | chr4.2:74036583-74036602 | None:intergenic | 55.0% | |
| GACTCCAGAAAGTTGGAGGC+TGG | + | chr4.2:74037627-74037646 | MS.gene043037:CDS | 55.0% | |
| GAGGGGAAGAAAAGTGGGGT+TGG | + | chr4.2:74037067-74037086 | MS.gene043037:CDS | 55.0% | |
| GGGGTGAGGGGAAGAAAAGT+GGG | + | chr4.2:74037062-74037081 | MS.gene043037:CDS | 55.0% | |
| GGGTGAGGGGAAGAAAAGTG+GGG | + | chr4.2:74037063-74037082 | MS.gene043037:CDS | 55.0% | |
| TTCTGGGCGAAATAACCGCC+GGG | - | chr4.2:74036590-74036609 | None:intergenic | 55.0% | |
| !! | GCGCTTGGCTTTTTAGCGCT+TGG | + | chr4.2:74037445-74037464 | MS.gene043037:CDS | 55.0% |
| AAGAGTTCGGCTTCCGGTGC+CGG | + | chr4.2:74036965-74036984 | MS.gene043037:CDS | 60.0% | |
| GCACCGGAAGCCGAACTCTT+AGG | - | chr4.2:74036965-74036984 | None:intergenic | 60.0% | |
| GCTTGTTCCCAAGTTCCCGG+CGG | + | chr4.2:74036572-74036591 | MS.gene043037:CDS | 60.0% | |
| GGGGGTGAGGGGAAGAAAAG+TGG | + | chr4.2:74037061-74037080 | MS.gene043037:CDS | 60.0% | |
| ! | ATTGATTCCGGCAGCGTCGG+CGG | - | chr4.2:74036507-74036526 | None:intergenic | 60.0% |
| ! | GGCTGCCAAGGCGTCTGATT+TGG | + | chr4.2:74037597-74037616 | MS.gene043037:CDS | 60.0% |
| GGCGGCGACGGTGTATGCGA+TGG | - | chr4.2:74036489-74036508 | None:intergenic | 70.0% | |
| ! | ACCGTCGCCGCCGACGCTGC+CGG | + | chr4.2:74036497-74036516 | MS.gene043037:CDS | 80.0% |
| !!! | TCCGGCAGCGTCGGCGGCGA+CGG | - | chr4.2:74036501-74036520 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 74036401 | 74037732 | 74036401 | ID=MS.gene043037 |
| chr4.2 | mRNA | 74036401 | 74037732 | 74036401 | ID=MS.gene043037.t1;Parent=MS.gene043037 |
| chr4.2 | exon | 74036401 | 74037732 | 74036401 | ID=MS.gene043037.t1.exon1;Parent=MS.gene043037.t1 |
| chr4.2 | CDS | 74036401 | 74037732 | 74036401 | ID=cds.MS.gene043037.t1;Parent=MS.gene043037.t1 |
| Gene Sequence |
| Protein sequence |
