AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51840.t1 MTR_7g077830 96.629 534 17 1 1 533 1 534 0.0 1040
MS.gene51840.t1 MTR_8g030600 75.000 588 92 6 1 533 1 588 0.0 863
MS.gene51840.t1 MTR_3g463080 78.241 432 94 0 102 533 85 516 0.0 720
MS.gene51840.t1 MTR_8g030600 71.542 506 89 6 1 451 1 506 0.0 706
MS.gene51840.t1 MTR_2g027710 97.159 176 5 0 321 496 59 234 2.24e-119 352
MS.gene51840.t1 MTR_7g066780 40.047 427 248 3 109 532 85 506 1.82e-111 341
MS.gene51840.t1 MTR_4g116030 40.117 511 279 10 39 529 21 524 5.15e-111 340
MS.gene51840.t1 MTR_5g069630 39.552 402 236 2 137 531 111 512 2.38e-94 297
MS.gene51840.t1 MTR_4g030900 37.613 444 247 6 118 533 2 443 2.26e-88 279
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51840.t1 AT4G00370 76.234 547 110 5 1 533 1 541 0.0 818
MS.gene51840.t1 AT2G29650 75.737 441 106 1 94 533 72 512 0.0 706
MS.gene51840.t1 AT2G29650 78.173 394 86 0 140 533 7 400 0.0 648
MS.gene51840.t1 AT2G29650 78.462 390 84 0 144 533 1 390 0.0 643
MS.gene51840.t1 AT2G29650 73.394 327 86 1 94 419 72 398 6.71e-177 504
MS.gene51840.t1 AT2G38060 39.030 474 280 5 68 532 39 512 5.26e-114 347
MS.gene51840.t1 AT5G20380 41.706 422 236 7 115 529 90 508 5.44e-104 322
MS.gene51840.t1 AT5G20380 41.706 422 236 7 115 529 142 560 1.27e-103 323
MS.gene51840.t1 AT3G46980 41.687 403 227 3 137 531 125 527 4.16e-102 318
MS.gene51840.t1 AT3G46980 41.687 403 227 3 137 531 125 527 4.90e-102 317
MS.gene51840.t1 AT3G46980 41.687 403 227 3 137 531 173 575 1.89e-101 317
MS.gene51840.t1 AT2G38060 38.902 419 248 4 68 478 39 457 6.18e-98 308
MS.gene51840.t1 AT5G44370 35.499 431 261 5 118 533 4 432 7.43e-85 270
MS.gene51840.t1 AT3G46980 39.769 347 201 3 193 531 1 347 2.01e-79 253
MS.gene51840.t1 AT3G46980 39.769 347 201 3 193 531 1 347 2.01e-79 253
MS.gene51840.t1 AT3G46980 39.769 347 201 3 193 531 1 347 2.12e-79 253
MS.gene51840.t1 AT3G46980 39.769 347 201 3 193 531 1 347 2.12e-79 253
MS.gene51840.t1 AT3G46980 37.943 282 167 3 258 531 2 283 1.21e-56 191

Find 130 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTATTATGCGTGCCTTTA+TGG 0.088357 7.4:-28421714 MS.gene51840:CDS
CTTAGATTCTTGGTGGTATA+TGG 0.187897 7.4:-28421841 MS.gene51840:intron
TTCTTGGAATGACGTGTTTA+AGG 0.216470 7.4:-28419713 MS.gene51840:CDS
GGTGTGCTTGCTGGCGTCTT+TGG 0.227575 7.4:-28419860 MS.gene51840:CDS
TTCACTTCTTTCATTGCTTC+AGG 0.233451 7.4:-28423738 MS.gene51840:intron
GAAGCATCTGGTTTGCCTTT+TGG 0.244662 7.4:-28421107 MS.gene51840:CDS
AAGTTCAACCTCACTGAATC+TGG 0.253604 7.4:-28420631 MS.gene51840:CDS
CTTATTATGCGTGCCTTTAT+GGG 0.279316 7.4:-28421713 MS.gene51840:CDS
CAATGTCACAAGAGTTTAAC+TGG 0.281775 7.4:-28422031 MS.gene51840:CDS
ACACCTATTGCTGCAAGAAT+TGG 0.294493 7.4:-28421749 MS.gene51840:CDS
CTGATGGCCACCCAAGGTTT+TGG 0.299035 7.4:+28421154 None:intergenic
CCGAGATCCGGGTCATCTTT+TGG 0.301202 7.4:+28420922 None:intergenic
ATGGCCGTGTTTGCAAATAT+TGG 0.302731 7.4:-28420580 MS.gene51840:CDS
TTCTATCAAAAGCACCAGTT+TGG 0.314560 7.4:-28420825 MS.gene51840:CDS
CATCTGTTTCGGACATTCCT+TGG 0.328614 7.4:-28420855 MS.gene51840:CDS
TCTCTCATTTCTGCCACAAT+TGG 0.328674 7.4:-28420792 MS.gene51840:CDS
GTCCAAGTGGATTCCAGTTT+CGG 0.337421 7.4:-28421259 MS.gene51840:CDS
TACCTTTCGAACAGTTGTTA+TGG 0.353371 7.4:+28420519 None:intergenic
TCAATTTCAGGGCGTATTGC+TGG 0.355168 7.4:-28419900 MS.gene51840:intron
ATGCAATCAATCGGGTTTCT+AGG 0.357772 7.4:-28420341 MS.gene51840:CDS
TCTGTTGCATTATACATAAT+AGG 0.358132 7.4:-28419688 MS.gene51840:CDS
GATCTGCTTCTCTCCGAAAC+TGG 0.362948 7.4:+28421246 None:intergenic
CAAAAGGGTTACTCGCAATC+TGG 0.368248 7.4:+28422674 None:intergenic
CTCTCATTTCTGCCACAATT+GGG 0.368700 7.4:-28420791 MS.gene51840:CDS
TTGGATCCCTTGGAAGCATC+TGG 0.370421 7.4:-28421119 MS.gene51840:CDS
CTTGGACAGTATATTATTCA+TGG 0.377433 7.4:+28421275 None:intergenic
GGGAAGGTCGTGCTAGGATT+TGG 0.384068 7.4:-28421803 MS.gene51840:CDS
GGCTCTTATGTGTTCTTCCA+TGG 0.389923 7.4:-28420609 MS.gene51840:CDS
AATACAGCAGGTGTGCTTGC+TGG 0.392626 7.4:-28419869 MS.gene51840:CDS
AACCTCACCGATTCCCATAA+AGG 0.393601 7.4:+28421700 None:intergenic
TCTATCAAAAGCACCAGTTT+GGG 0.404421 7.4:-28420824 MS.gene51840:CDS
CAAAAGATGACCCGGATCTC+GGG 0.407606 7.4:-28420921 MS.gene51840:CDS
GCAATTCTATTGGAAGGAAA+TGG 0.413376 7.4:-28422493 MS.gene51840:CDS
GATGCCTACTTACTATAATC+AGG 0.418993 7.4:-28420746 MS.gene51840:intron
AACAGGCGAAGCAATTCTAT+TGG 0.419363 7.4:-28422503 MS.gene51840:CDS
GTCTTTGGCACAGCTGCAAC+TGG 0.422764 7.4:-28419845 MS.gene51840:CDS
TTAGATTCTTGGTGGTATAT+GGG 0.425597 7.4:-28421840 MS.gene51840:intron
CACCTATTGCTGCAAGAATT+GGG 0.432187 7.4:-28421748 MS.gene51840:CDS
CCTTGGTTCTGTGGTAGGCT+TGG 0.435784 7.4:-28421196 MS.gene51840:CDS
ATGTACCTTGGTTCTGTGGT+AGG 0.451338 7.4:-28421201 MS.gene51840:CDS
TGGCAGATCATGCAATCAAT+CGG 0.452349 7.4:-28420350 MS.gene51840:intron
CAATTTCAGGGCGTATTGCT+GGG 0.455105 7.4:-28419899 MS.gene51840:intron
TGCTAGGATTTGGAGTTGTA+TGG 0.455824 7.4:-28421793 MS.gene51840:CDS
CCAAAAGATGACCCGGATCT+CGG 0.456410 7.4:-28420922 MS.gene51840:CDS
ATGCGTGCCTTTATGGGAAT+CGG 0.457296 7.4:-28421707 MS.gene51840:CDS
ATTGAACAAAGAGAAGTATA+CGG 0.459678 7.4:-28422634 MS.gene51840:CDS
ATTGTGCATGGCATGCAGTC+AGG 0.462532 7.4:-28420264 MS.gene51840:intron
TCGGATGCCTTCTCACAGTC+TGG 0.475944 7.4:-28420103 MS.gene51840:CDS
CTCCGAAACTGGAATCCACT+TGG 0.479863 7.4:+28421257 None:intergenic
AGCCCAATTCTTGCAGCAAT+AGG 0.485315 7.4:+28421746 None:intergenic
GGCAGCAACTTCCTAAGCGC+TGG 0.486573 7.4:-28422450 MS.gene51840:CDS
TATTCCAATCATCAAGACAT+TGG 0.488754 7.4:-28420076 MS.gene51840:CDS
CGTATCGAAAACATCTGTTT+CGG 0.489579 7.4:-28420866 MS.gene51840:CDS
ATTAAACCACTTATAGCCAT+TGG 0.496105 7.4:+28423774 None:intergenic
ACATAATAGGCACACTGGTA+TGG 0.496734 7.4:-28419675 MS.gene51840:CDS
GAAAGAAGTGAAGCTTCTGT+TGG 0.499201 7.4:+28423749 None:intergenic
GTGGCATCTGATGAAGGAAC+AGG 0.503282 7.4:-28422520 MS.gene51840:CDS
CTGGGGCTATCTACTTACTC+AGG 0.504684 7.4:-28421970 MS.gene51840:intron
TGGTCCAATGTCTTGATGAT+TGG 0.505896 7.4:+28420072 None:intergenic
TTTCCTCTACCCCGAGATCC+GGG 0.506435 7.4:+28420911 None:intergenic
CCCTCCAATATTTGCAAACA+CGG 0.508594 7.4:+28420576 None:intergenic
AGGCAAACCAGATGCTTCCA+AGG 0.509648 7.4:+28421112 None:intergenic
TTTGATAGAATTAATTTCCA+AGG 0.514333 7.4:+28420838 None:intergenic
CAGTTAAACTCTTGTGACAT+TGG 0.514473 7.4:+28422032 None:intergenic
GACAGTATATTATTCATGGC+GGG 0.516181 7.4:+28421279 None:intergenic
ATGGTTCGCTGGTATCTCCT+TGG 0.520372 7.4:-28422474 MS.gene51840:CDS
TTCTTATCCAAAACCTTGGG+TGG 0.525807 7.4:-28421161 MS.gene51840:CDS
GAGATTATAAGAGCCCAAAC+TGG 0.527723 7.4:+28420811 None:intergenic
TGACCCGGATCTCGGGGTAG+AGG 0.528268 7.4:-28420914 MS.gene51840:CDS
TATATTATTCATGGCGGGCA+TGG 0.532851 7.4:+28421284 None:intergenic
GGTATATGGGCAGACAAACT+TGG 0.535648 7.4:-28421827 MS.gene51840:CDS
GATCCTGTGGCATCTGATGA+AGG 0.540723 7.4:-28422526 MS.gene51840:CDS
ATTACGATAAGCCAGCGCTT+AGG 0.542049 7.4:+28422439 None:intergenic
GGCAGATCATGCAATCAATC+GGG 0.542373 7.4:-28420349 MS.gene51840:intron
ACCTTTGCTAACTAACGTGT+CGG 0.543679 7.4:+28420546 None:intergenic
TGGAGTTGTATGGTGGTCAA+TGG 0.544883 7.4:-28421783 MS.gene51840:CDS
GAATAAATGTTCCCCAATTG+TGG 0.546749 7.4:+28420779 None:intergenic
GTATATAGCGGCATGTACCT+TGG 0.546888 7.4:-28421213 MS.gene51840:CDS
GTTCGCTGGTATCTCCTTGG+TGG 0.550695 7.4:-28422471 MS.gene51840:CDS
CAAAGAGAAGTATACGGACT+AGG 0.551941 7.4:-28422628 MS.gene51840:CDS
CTTGGTGGGAAGGTCGTGCT+AGG 0.552485 7.4:-28421809 MS.gene51840:CDS
CGGCATGTACCTTGGTTCTG+TGG 0.552939 7.4:-28421205 MS.gene51840:CDS
TTCCATAACAACTGTTCGAA+AGG 0.559878 7.4:-28420521 MS.gene51840:intron
TCTCATTTCTGCCACAATTG+GGG 0.559881 7.4:-28420790 MS.gene51840:CDS
AAATGTATATCAGTTAAGAA+AGG 0.560962 7.4:-28422743 MS.gene51840:CDS
ATGCACAATACTGCCATGGC+GGG 0.561244 7.4:+28420278 None:intergenic
GGCGAAGCAATTCTATTGGA+AGG 0.565577 7.4:-28422499 MS.gene51840:CDS
GAACATTTATTCTATTAACA+TGG 0.567906 7.4:-28420768 MS.gene51840:CDS
CGCCATGGCAGTATTGTGCA+TGG 0.568359 7.4:-28420276 MS.gene51840:CDS
AGTTCAACCTCACTGAATCT+GGG 0.568787 7.4:-28420630 MS.gene51840:CDS
ATTGGAAGGAAATGGTTCGC+TGG 0.569594 7.4:-28422485 MS.gene51840:CDS
CCATGTCAAAACACCCGCCA+TGG 0.580413 7.4:-28420291 MS.gene51840:CDS
GGCAGACAAACTTGGTGGGA+AGG 0.582949 7.4:-28421819 MS.gene51840:CDS
GCCGTGTTTGCAAATATTGG+AGG 0.583856 7.4:-28420577 MS.gene51840:CDS
CTGGGACTATCGAATACAGC+AGG 0.588965 7.4:-28419881 MS.gene51840:CDS
ATAACCTGATTATAGTAAGT+AGG 0.589115 7.4:+28420742 None:intergenic
CCAAATGAGTAAAACACTGA+TGG 0.590761 7.4:+28421138 None:intergenic
ATAGCACCAATGGCTATAAG+TGG 0.591240 7.4:-28423780 None:intergenic
GGCAAACCAGATGCTTCCAA+GGG 0.591797 7.4:+28421113 None:intergenic
GTTCCTTCATCAGATGCCAC+AGG 0.595225 7.4:+28422523 None:intergenic
AATATTTGCAAACACGGCCA+TGG 0.597293 7.4:+28420582 None:intergenic
AACTGGAACAGTGCAACAGT+TGG 0.597654 7.4:-28422014 MS.gene51840:CDS
TGTTCTTCCATGGTTAACCA+TGG 0.609195 7.4:-28420599 MS.gene51840:CDS
TGCCATGCACAATACTGCCA+TGG 0.612350 7.4:+28420274 None:intergenic
GCCGACACGTTAGTTAGCAA+AGG 0.615485 7.4:-28420547 MS.gene51840:CDS
TATGGGCAGACAAACTTGGT+GGG 0.623534 7.4:-28421823 MS.gene51840:CDS
ATATGGGCAGACAAACTTGG+TGG 0.628033 7.4:-28421824 MS.gene51840:CDS
TGAATAATATACTGTCCAAG+TGG 0.631779 7.4:-28421272 MS.gene51840:CDS
TAGGATTTGGAGTTGTATGG+TGG 0.635420 7.4:-28421790 MS.gene51840:CDS
TAGCTCACCAAAAGATGACC+CGG 0.637431 7.4:-28420929 MS.gene51840:CDS
AACACGGCCATGGTTAACCA+TGG 0.638076 7.4:+28420592 None:intergenic
ATTATACATAATAGGCACAC+TGG 0.640114 7.4:-28419680 MS.gene51840:CDS
AAAAGATGACCCGGATCTCG+GGG 0.643756 7.4:-28420920 MS.gene51840:CDS
ATAAAGACCAGACTGTGAGA+AGG 0.653878 7.4:+28420096 None:intergenic
CCGTGTTTGCAAATATTGGA+GGG 0.658652 7.4:-28420576 MS.gene51840:CDS
TGTTTGCAAATATTGGAGGG+TGG 0.661112 7.4:-28420573 MS.gene51840:CDS
GCACGCATAATAAGCAAACA+AGG 0.665091 7.4:+28421722 None:intergenic
AAAACACTGATGGCCACCCA+AGG 0.665588 7.4:+28421148 None:intergenic
ACTGGATACATACTTCAAAG+AGG 0.666637 7.4:-28419827 MS.gene51840:intron
AAGGATCTATCACTTCAAAG+AGG 0.667820 7.4:-28422724 MS.gene51840:CDS
GGACAGTATATTATTCATGG+CGG 0.671998 7.4:+28421278 None:intergenic
ATATGACATTGATGAAACGA+AGG 0.676264 7.4:-28422551 MS.gene51840:CDS
TGCCTTTATGGGAATCGGTG+AGG 0.677573 7.4:-28421702 MS.gene51840:intron
TCACTTTCGCTAGTATATAG+CGG 0.679969 7.4:-28421225 MS.gene51840:CDS
TTAGGAAGTTGCTGCCACCA+AGG 0.680539 7.4:+28422457 None:intergenic
TGAAACGAAGGTAGATCCTG+TGG 0.681518 7.4:-28422539 MS.gene51840:CDS
CATGCACAATACTGCCATGG+CGG 0.706051 7.4:+28420277 None:intergenic
CCAAGCCTACCACAGAACCA+AGG 0.711808 7.4:+28421196 None:intergenic
AAATTACTCACAGCATAACG+TGG 0.722801 7.4:+28420052 None:intergenic
ATAAGAGCCCAGATTCAGTG+AGG 0.769613 7.4:+28420623 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTAAATAAAAAAATT+TGG - chr7.4:28419783-28419802 MS.gene51840:intron 0.0%
!!! TTATTTTTTTTATTTTTTTT+TGG + chr7.4:28420240-28420259 None:intergenic 0.0%
!! AAAAAATAAAATGAATTTAG+TGG + chr7.4:28419725-28419744 None:intergenic 10.0%
!! CTGTAAAAAAAAAAAAATTA+TGG + chr7.4:28423284-28423303 None:intergenic 10.0%
!!! CATAATTTTTTTTTTTTTAC+AGG - chr7.4:28423282-28423301 MS.gene51840:intron 10.0%
!!! TTTTAAATAAAAAAATTTGG+TGG - chr7.4:28419786-28419805 MS.gene51840:intron 10.0%
!! AAAAAATTATGGTTTGAATT+AGG + chr7.4:28423273-28423292 None:intergenic 15.0%
!! AAAAATTAATACAAAAAGAC+AGG + chr7.4:28419882-28419901 None:intergenic 15.0%
!! AAAATAAAAAAAATAACACG+TGG - chr7.4:28420244-28420263 MS.gene51840:intron 15.0%
!! CTTAATATATATGGATAATA+TGG - chr7.4:28423040-28423059 MS.gene51840:intron 15.0%
!!! ATTTTGTAGTTTTTTTCTTA+GGG + chr7.4:28420173-28420192 None:intergenic 15.0%
!!! TGATATTTTGATAAAAACTA+TGG - chr7.4:28420052-28420071 MS.gene51840:intron 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG - chr7.4:28420357-28420376 MS.gene51840:intron 15.0%
!! AAATGTATATCAGTTAAGAA+AGG - chr7.4:28420667-28420686 MS.gene51840:intron 20.0%
!! AAATGTATTATACAAAGCAT+AGG + chr7.4:28422697-28422716 None:intergenic 20.0%
!! ACTATTCATGATATGTTAAA+TGG - chr7.4:28422399-28422418 MS.gene51840:CDS 20.0%
!! ATAACATTGTTATGTTATGA+TGG - chr7.4:28421536-28421555 MS.gene51840:intron 20.0%
!! ATATGAAATCAATTCTTGTT+AGG + chr7.4:28421501-28421520 None:intergenic 20.0%
!! CATTACTCTAATTAAAGTAA+AGG + chr7.4:28420433-28420452 None:intergenic 20.0%
!! CTTTGCAATTTATATATCAT+TGG - chr7.4:28423644-28423663 MS.gene51840:intron 20.0%
!! GAACATTTATTCTATTAACA+TGG - chr7.4:28422642-28422661 MS.gene51840:CDS 20.0%
!! TAATACAATTCATAAAATGC+TGG + chr7.4:28419815-28419834 None:intergenic 20.0%
!! TACAATCATATTTACAAATG+AGG + chr7.4:28420625-28420644 None:intergenic 20.0%
!! TATTCTGCTCTTAATATATA+TGG - chr7.4:28423031-28423050 MS.gene51840:intron 20.0%
!! TTTGATAGAATTAATTTCCA+AGG + chr7.4:28422575-28422594 None:intergenic 20.0%
!!! AATTCTAACTATTTGTTTTC+AGG - chr7.4:28422097-28422116 MS.gene51840:intron 20.0%
!!! AGAATTATTTTGTGTTAAGA+GGG + chr7.4:28422083-28422102 None:intergenic 20.0%
!!! ATTCTAACTATTTGTTTTCA+GGG - chr7.4:28422098-28422117 MS.gene51840:intron 20.0%
!!! GATTTTGTAGTTTTTTTCTT+AGG + chr7.4:28420174-28420193 None:intergenic 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG - chr7.4:28420356-28420375 MS.gene51840:intron 20.0%
!!! TAGAATTATTTTGTGTTAAG+AGG + chr7.4:28422084-28422103 None:intergenic 20.0%
!!! TATGGAATATATTTTCTACT+GGG - chr7.4:28423753-28423772 MS.gene51840:CDS 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG - chr7.4:28420358-28420377 MS.gene51840:intron 20.0%
!!! TTTTATTTTTTTTTGGCCTT+GGG + chr7.4:28420233-28420252 None:intergenic 20.0%
!!! TTTTGTAGTTTTTTTCTTAG+GGG + chr7.4:28420172-28420191 None:intergenic 20.0%
!!! TTTTTATTTTTTTTTGGCCT+TGG + chr7.4:28420234-28420253 None:intergenic 20.0%
!!! TTTTTTTCTTCTTAGATTCT+TGG - chr7.4:28421559-28421578 MS.gene51840:intron 20.0%
!!! TTTTTTTTTTTTACAGGGAT+CGG - chr7.4:28423288-28423307 MS.gene51840:intron 20.0%
! AAATTATGGTTTGAATTAGG+TGG + chr7.4:28423270-28423289 None:intergenic 25.0%
! ACATATCATGAATAGTGATA+TGG + chr7.4:28422395-28422414 None:intergenic 25.0%
! ACCTGTATATTACAATATGA+AGG + chr7.4:28421336-28421355 None:intergenic 25.0%
! AGAAAAAAGATGACTGAATT+AGG + chr7.4:28421422-28421441 None:intergenic 25.0%
! AGGACTTGTATAAATTAGTT+TGG - chr7.4:28420487-28420506 MS.gene51840:intron 25.0%
! AGTAGATTTCATCGAAATTA+AGG + chr7.4:28422352-28422371 None:intergenic 25.0%
! ATAACCTGATTATAGTAAGT+AGG + chr7.4:28422671-28422690 None:intergenic 25.0%
! ATTTGAGGAATTCAAACTAA+AGG + chr7.4:28423193-28423212 None:intergenic 25.0%
! ATTTGTAATAGTTGTTGATC+TGG + chr7.4:28422949-28422968 None:intergenic 25.0%
! CTTTCTTTGTAGTTTACTTT+AGG - chr7.4:28420098-28420117 MS.gene51840:CDS 25.0%
! GTAGATTTCATCGAAATTAA+GGG + chr7.4:28422351-28422370 None:intergenic 25.0%
! TAACATAACAATGTTATGCT+AGG + chr7.4:28421533-28421552 None:intergenic 25.0%
! TAACATATAAATACAGCTTG+TGG + chr7.4:28421987-28422006 None:intergenic 25.0%
! TCATGATATGTTAAATGGAA+GGG - chr7.4:28422404-28422423 MS.gene51840:CDS 25.0%
! TCCTTCATATTGTAATATAC+AGG - chr7.4:28421332-28421351 MS.gene51840:intron 25.0%
! TCTGTTGCATTATACATAAT+AGG - chr7.4:28423722-28423741 MS.gene51840:intron 25.0%
! TTCATAGCAAAACTGATAAT+TGG + chr7.4:28421817-28421836 None:intergenic 25.0%
! TTCATGATATGTTAAATGGA+AGG - chr7.4:28422403-28422422 MS.gene51840:CDS 25.0%
! TTGTAGTAACTCTTTGATAT+TGG - chr7.4:28420640-28420659 MS.gene51840:CDS 25.0%
!! AAGATAGTTTCTCTTTTGAA+TGG - chr7.4:28421905-28421924 MS.gene51840:intron 25.0%
!! AGTTTGAATTCCTCAAATTT+TGG - chr7.4:28423195-28423214 MS.gene51840:intron 25.0%
!! ATGGAATATATTTTCTACTG+GGG - chr7.4:28423754-28423773 MS.gene51840:CDS 25.0%
!! ATTGAACAAAGAGAAGTATA+CGG - chr7.4:28420776-28420795 MS.gene51840:CDS 25.0%
!! CAAAGCATGGATATTATTTT+AGG - chr7.4:28420467-28420486 MS.gene51840:intron 25.0%
!! GTATGGAATATATTTTCTAC+TGG - chr7.4:28423752-28423771 MS.gene51840:CDS 25.0%
!! TATATGTGATTTTTCATTGC+AGG - chr7.4:28423674-28423693 MS.gene51840:intron 25.0%
!!! AAATTAGCTTGTTGATTCAA+TGG + chr7.4:28422740-28422759 None:intergenic 25.0%
!!! AATTCAGTCATCTTTTTTCT+GGG - chr7.4:28421422-28421441 MS.gene51840:intron 25.0%
!!! AGCTAATTTGTCATTTTATC+AGG - chr7.4:28422751-28422770 MS.gene51840:intron 25.0%
!!! GGATCACTATATTTTAAACT+AGG - chr7.4:28420549-28420568 MS.gene51840:CDS 25.0%
!!! TAATTCAGTCATCTTTTTTC+TGG - chr7.4:28421421-28421440 MS.gene51840:intron 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG - chr7.4:28420359-28420378 MS.gene51840:intron 25.0%
!!! TTTATTTTTTTTTGGCCTTG+GGG + chr7.4:28420232-28420251 None:intergenic 25.0%
AAGAGAAACTATCTTCGATT+TGG + chr7.4:28421900-28421919 None:intergenic 30.0%
AAGATATATGACAGTGTGTT+TGG + chr7.4:28421221-28421240 None:intergenic 30.0%
ATATGACATTGATGAAACGA+AGG - chr7.4:28420859-28420878 MS.gene51840:CDS 30.0%
ATTATACATAATAGGCACAC+TGG - chr7.4:28423730-28423749 MS.gene51840:intron 30.0%
CATATGCAAACATGTTGTAT+TGG + chr7.4:28423231-28423250 None:intergenic 30.0%
CATGATATGTTAAATGGAAG+GGG - chr7.4:28422405-28422424 MS.gene51840:CDS 30.0%
CCACATAAACCAAAATTAGA+GGG + chr7.4:28420531-28420550 None:intergenic 30.0%
CTATGTGTACAATGTATGTT+TGG - chr7.4:28421070-28421089 MS.gene51840:intron 30.0%
CTTGGACAGTATATTATTCA+TGG + chr7.4:28422138-28422157 None:intergenic 30.0%
GACAATATTTCAGTAACAAG+TGG + chr7.4:28422923-28422942 None:intergenic 30.0%
TAGTGGAAAATTGAAAGTGA+TGG + chr7.4:28419708-28419727 None:intergenic 30.0%
TATTCCAATCATCAAGACAT+TGG - chr7.4:28423334-28423353 MS.gene51840:intron 30.0%
TCCACATAAACCAAAATTAG+AGG + chr7.4:28420532-28420551 None:intergenic 30.0%
TCTTACCATGAAAAGTTTGT+GGG + chr7.4:28419963-28419982 None:intergenic 30.0%
TGAATAATATACTGTCCAAG+TGG - chr7.4:28422138-28422157 MS.gene51840:intron 30.0%
TGCTACAAATGCAAAACTTA+GGG + chr7.4:28420200-28420219 None:intergenic 30.0%
TGTACAATGTATGTTTGGAT+TGG - chr7.4:28421075-28421094 MS.gene51840:intron 30.0%
TTAGTAAGCTATACTCTACA+CGG + chr7.4:28421946-28421965 None:intergenic 30.0%
TTTGCATAACACGAAAAAGA+TGG + chr7.4:28421793-28421812 None:intergenic 30.0%
! ACTAGGCTTAAATGTAGTTT+TGG - chr7.4:28420566-28420585 MS.gene51840:CDS 30.0%
! AGCTTTTCTTTTATGCAACA+TGG - chr7.4:28421006-28421025 MS.gene51840:intron 30.0%
! ATTTTCCCACAAACTTTTCA+TGG - chr7.4:28419955-28419974 MS.gene51840:intron 30.0%
! CTATGAAATTTTACTGGTCA+TGG + chr7.4:28423396-28423415 None:intergenic 30.0%
! CTTTTCTTATCCAAAACCTT+GGG - chr7.4:28422246-28422265 MS.gene51840:intron 30.0%
! TACATTCGAAATTTGAGACA+TGG + chr7.4:28421252-28421271 None:intergenic 30.0%
! TTAGATTCTTGGTGGTATAT+GGG - chr7.4:28421570-28421589 MS.gene51840:intron 30.0%
! TTTTCTTCTTAGATTCTTGG+TGG - chr7.4:28421562-28421581 MS.gene51840:intron 30.0%
! TTTTGCATTTGTAGCAGTTT+TGG - chr7.4:28420204-28420223 MS.gene51840:intron 30.0%
!! ACTTACTTTTCTCAACCAAA+AGG + chr7.4:28422321-28422340 None:intergenic 30.0%
!! CATAAAAGTGCCAAAATTTG+AGG + chr7.4:28423208-28423227 None:intergenic 30.0%
!!! ATTCAGTCATCTTTTTTCTG+GGG - chr7.4:28421423-28421442 MS.gene51840:intron 30.0%
!!! GACTTCTACTTTTTGCAAAA+GGG + chr7.4:28420754-28420773 None:intergenic 30.0%
!!! TGACTTCTACTTTTTGCAAA+AGG + chr7.4:28420755-28420774 None:intergenic 30.0%
!!! TTATTTTTTTTTGGCCTTGG+GGG + chr7.4:28420231-28420250 None:intergenic 30.0%
AAATGAATGTGGAGAACTCT+CGG + chr7.4:28423610-28423629 None:intergenic 35.0%
AAATTACTCACAGCATAACG+TGG + chr7.4:28423361-28423380 None:intergenic 35.0%
AAGGATCTATCACTTCAAAG+AGG - chr7.4:28420686-28420705 MS.gene51840:intron 35.0%
ACCAAGATAAGATACTCACA+CGG + chr7.4:28421033-28421052 None:intergenic 35.0%
ACTGGATACATACTTCAAAG+AGG - chr7.4:28423583-28423602 MS.gene51840:intron 35.0%
AGAATCACAGTGCAAAATCA+CGG + chr7.4:28421180-28421199 None:intergenic 35.0%
AGAGTTCTCCACATTCATTT+CGG - chr7.4:28423610-28423629 MS.gene51840:intron 35.0%
AGTAAACTCATTTCCTTTCC+AGG - chr7.4:28422454-28422473 MS.gene51840:CDS 35.0%
AGTAACTCTTTGATATTGGC+AGG - chr7.4:28420644-28420663 MS.gene51840:intron 35.0%
ATATTGCCACCATCCATAAA+AGG + chr7.4:28420012-28420031 None:intergenic 35.0%
ATCGCAACTTCGTTAAAGTT+AGG + chr7.4:28420144-28420163 None:intergenic 35.0%
CAAAATTAGAGGGTTTCAAG+AGG + chr7.4:28420521-28420540 None:intergenic 35.0%
CAATGTCACAAGAGTTTAAC+TGG - chr7.4:28421379-28421398 MS.gene51840:intron 35.0%
CAGTTAAACTCTTGTGACAT+TGG + chr7.4:28421381-28421400 None:intergenic 35.0%
CCAAATGAGTAAAACACTGA+TGG + chr7.4:28422275-28422294 None:intergenic 35.0%
CCGAACAATTTCCTTCTATA+CGG + chr7.4:28422990-28423009 None:intergenic 35.0%
CCGTATAGAAGGAAATTGTT+CGG - chr7.4:28422987-28423006 MS.gene51840:intron 35.0%
CGTATCGAAAACATCTGTTT+CGG - chr7.4:28422544-28422563 MS.gene51840:CDS 35.0%
CTACAAATGCAAAACTTAGG+GGG + chr7.4:28420198-28420217 None:intergenic 35.0%
CTCTTACCATGAAAAGTTTG+TGG + chr7.4:28419964-28419983 None:intergenic 35.0%
CTGCTACAAATGCAAAACTT+AGG + chr7.4:28420201-28420220 None:intergenic 35.0%
CTTATTATGCGTGCCTTTAT+GGG - chr7.4:28421697-28421716 MS.gene51840:intron 35.0%
GAAAAAAAGCTCATCCTTGA+AGG - chr7.4:28422518-28422537 MS.gene51840:CDS 35.0%
GAATAAATGTTCCCCAATTG+TGG + chr7.4:28422634-28422653 None:intergenic 35.0%
GACAGTATATTATTCATGGC+GGG + chr7.4:28422134-28422153 None:intergenic 35.0%
GATGCCTACTTACTATAATC+AGG - chr7.4:28422664-28422683 MS.gene51840:CDS 35.0%
GCAATTCTATTGGAAGGAAA+TGG - chr7.4:28420917-28420936 MS.gene51840:CDS 35.0%
GCTACAAATGCAAAACTTAG+GGG + chr7.4:28420199-28420218 None:intergenic 35.0%
GGACAGTATATTATTCATGG+CGG + chr7.4:28422135-28422154 None:intergenic 35.0%
GTTTCCAGTAACTAGTCATA+TGG - chr7.4:28421758-28421777 MS.gene51840:CDS 35.0%
TACCTTTCGAACAGTTGTTA+TGG + chr7.4:28422894-28422913 None:intergenic 35.0%
TACTTGCCAAGAAAGAACAA+AGG + chr7.4:28422438-28422457 None:intergenic 35.0%
TATTGCCACCATCCATAAAA+GGG + chr7.4:28420011-28420030 None:intergenic 35.0%
TCACTTTCGCTAGTATATAG+CGG - chr7.4:28422185-28422204 MS.gene51840:intron 35.0%
TCGCAACTTCGTTAAAGTTA+GGG + chr7.4:28420143-28420162 None:intergenic 35.0%
TGGAAAATTGAAAGTGATGG+AGG + chr7.4:28419705-28419724 None:intergenic 35.0%
TTAACAGAATGCCGTATAGA+AGG - chr7.4:28422976-28422995 MS.gene51840:intron 35.0%
TTCACTTCTTTCATTGCTTC+AGG - chr7.4:28419672-28419691 MS.gene51840:CDS 35.0%
TTCCATAACAACTGTTCGAA+AGG - chr7.4:28422889-28422908 MS.gene51840:intron 35.0%
TTCTTGGAATGACGTGTTTA+AGG - chr7.4:28423697-28423716 MS.gene51840:intron 35.0%
TTTCATAGTGCGTGAAATTC+TGG - chr7.4:28423408-28423427 MS.gene51840:intron 35.0%
! CACAAACTTTTCATGGTAAG+AGG - chr7.4:28419962-28419981 MS.gene51840:intron 35.0%
! CACGCACTATGAAATTTTAC+TGG + chr7.4:28423402-28423421 None:intergenic 35.0%
! CCATCAGTGTTTTACTCATT+TGG - chr7.4:28422272-28422291 MS.gene51840:intron 35.0%
! CCTTTTCTTATCCAAAACCT+TGG - chr7.4:28422245-28422264 MS.gene51840:intron 35.0%
! CTAACCATATGACTAGTTAC+TGG + chr7.4:28421765-28421784 None:intergenic 35.0%
! CTCTTGAAACCCTCTAATTT+TGG - chr7.4:28420519-28420538 MS.gene51840:intron 35.0%
! CTGAGTGATGACTTGTATAA+TGG + chr7.4:28423442-28423461 None:intergenic 35.0%
! CTTAGATTCTTGGTGGTATA+TGG - chr7.4:28421569-28421588 MS.gene51840:intron 35.0%
! CTTTAACGAAGTTGCGATTT+TGG - chr7.4:28420146-28420165 MS.gene51840:intron 35.0%
! GATTTTTCATTGCAGGTTCT+TGG - chr7.4:28423681-28423700 MS.gene51840:intron 35.0%
! TTTTACTCATTTGGATCCCT+TGG - chr7.4:28422281-28422300 MS.gene51840:intron 35.0%
!! ATGTATGTTTGGATTGGTGA+CGG - chr7.4:28421081-28421100 MS.gene51840:intron 35.0%
!! TCTATCAAAAGCACCAGTTT+GGG - chr7.4:28422586-28422605 MS.gene51840:CDS 35.0%
!! TTCTATCAAAAGCACCAGTT+TGG - chr7.4:28422585-28422604 MS.gene51840:CDS 35.0%
!!! CCAAGGTTTTGGATAAGAAA+AGG + chr7.4:28422248-28422267 None:intergenic 35.0%
!!! CCCTCTAATTTTGGTTTATG+TGG - chr7.4:28420528-28420547 MS.gene51840:CDS 35.0%
!!! TATTTTTTTTTGGCCTTGGG+GGG + chr7.4:28420230-28420249 None:intergenic 35.0%
AAAAAGCTCATCCTTGAAGG+CGG - chr7.4:28422521-28422540 MS.gene51840:CDS 40.0%
AACAGGCGAAGCAATTCTAT+TGG - chr7.4:28420907-28420926 MS.gene51840:CDS 40.0%
AAGTTCAACCTCACTGAATC+TGG - chr7.4:28422779-28422798 MS.gene51840:intron 40.0%
AATATTTGCAAACACGGCCA+TGG + chr7.4:28422831-28422850 None:intergenic 40.0%
AATCGCGAATCGGTGAAAAT+AGG + chr7.4:28420595-28420614 None:intergenic 40.0%
ACACCTATTGCTGCAAGAAT+TGG - chr7.4:28421661-28421680 MS.gene51840:intron 40.0%
ACATAATAGGCACACTGGTA+TGG - chr7.4:28423735-28423754 MS.gene51840:intron 40.0%
ACCGTGTGAGTATCTTATCT+TGG - chr7.4:28421029-28421048 MS.gene51840:intron 40.0%
ACCTTTGCTAACTAACGTGT+CGG + chr7.4:28422867-28422886 None:intergenic 40.0%
ACTCCTCCTTTGTTCTTTCT+TGG - chr7.4:28422429-28422448 MS.gene51840:CDS 40.0%
AGGCAACTAAAATCGCGAAT+CGG + chr7.4:28420605-28420624 None:intergenic 40.0%
AGTTCAACCTCACTGAATCT+GGG - chr7.4:28422780-28422799 MS.gene51840:intron 40.0%
AGTTGCGTAAGAAAAAAGGC+AGG + chr7.4:28423096-28423115 None:intergenic 40.0%
ATAAAGACCAGACTGTGAGA+AGG + chr7.4:28423317-28423336 None:intergenic 40.0%
ATCGCGAATCGGTGAAAATA+GGG + chr7.4:28420594-28420613 None:intergenic 40.0%
ATGCAATCAATCGGGTTTCT+AGG - chr7.4:28423069-28423088 MS.gene51840:intron 40.0%
ATGGCCGTGTTTGCAAATAT+TGG - chr7.4:28422830-28422849 MS.gene51840:intron 40.0%
CACCTATTGCTGCAAGAATT+GGG - chr7.4:28421662-28421681 MS.gene51840:intron 40.0%
CATAAAAGGGTCATCAGCAT+TGG + chr7.4:28419998-28420017 None:intergenic 40.0%
CCCTCCAATATTTGCAAACA+CGG + chr7.4:28422837-28422856 None:intergenic 40.0%
CCGTGTTTGCAAATATTGGA+GGG - chr7.4:28422834-28422853 MS.gene51840:intron 40.0%
CGCAACTTCGTTAAAGTTAG+GGG + chr7.4:28420142-28420161 None:intergenic 40.0%
CTCTCATTTCTGCCACAATT+GGG - chr7.4:28422619-28422638 MS.gene51840:CDS 40.0%
GAAAGAAGTGAAGCTTCTGT+TGG + chr7.4:28419664-28419683 None:intergenic 40.0%
GAATTAGGTGGCTGCATATA+TGG + chr7.4:28423258-28423277 None:intergenic 40.0%
GAGATTATAAGAGCCCAAAC+TGG + chr7.4:28422602-28422621 None:intergenic 40.0%
GCAACTTCGTTAAAGTTAGG+GGG + chr7.4:28420141-28420160 None:intergenic 40.0%
GCACGCATAATAAGCAAACA+AGG + chr7.4:28421691-28421710 None:intergenic 40.0%
GCTCACGAGTTTCAATTTCA+GGG - chr7.4:28423499-28423518 MS.gene51840:intron 40.0%
GCTCAGTTGCGTAAGAAAAA+AGG + chr7.4:28423100-28423119 None:intergenic 40.0%
GCTTATTATGCGTGCCTTTA+TGG - chr7.4:28421696-28421715 MS.gene51840:intron 40.0%
GGTGGCAATATTTGTCTATG+TGG - chr7.4:28420021-28420040 MS.gene51840:intron 40.0%
TACTCAGGTGTGATTGCTAT+GGG - chr7.4:28421455-28421474 MS.gene51840:intron 40.0%
TCTCATTTCTGCCACAATTG+GGG - chr7.4:28422620-28422639 MS.gene51840:CDS 40.0%
TCTCTCATTTCTGCCACAAT+TGG - chr7.4:28422618-28422637 MS.gene51840:CDS 40.0%
TGCCACAAGTGCAAAACTTA+GGG - chr7.4:28420329-28420348 MS.gene51840:CDS 40.0%
TGCTCACGAGTTTCAATTTC+AGG - chr7.4:28423498-28423517 MS.gene51840:intron 40.0%
TGGCAGATCATGCAATCAAT+CGG - chr7.4:28423060-28423079 MS.gene51840:intron 40.0%
TGTTCTTCCATGGTTAACCA+TGG - chr7.4:28422811-28422830 MS.gene51840:intron 40.0%
TGTTTGCAAATATTGGAGGG+TGG - chr7.4:28422837-28422856 MS.gene51840:intron 40.0%
TTACTCAGGTGTGATTGCTA+TGG - chr7.4:28421454-28421473 MS.gene51840:intron 40.0%
TTCTTATCCAAAACCTTGGG+TGG - chr7.4:28422249-28422268 MS.gene51840:intron 40.0%
TTGCCAAGAAAGAACAAAGG+AGG + chr7.4:28422435-28422454 None:intergenic 40.0%
! ATCGCAACTTTGGGAAAGTT+AGG - chr7.4:28420387-28420406 MS.gene51840:intron 40.0%
! CAAAGAGAAGTATACGGACT+AGG - chr7.4:28420782-28420801 MS.gene51840:CDS 40.0%
! CAATGCTGATGACCCTTTTA+TGG - chr7.4:28419996-28420015 MS.gene51840:intron 40.0%
! CTTTCCCAAAGTTGCGATTT+TGG + chr7.4:28420385-28420404 None:intergenic 40.0%
! TAGGATTTGGAGTTGTATGG+TGG - chr7.4:28421620-28421639 MS.gene51840:intron 40.0%
! TCGCAACTTTGGGAAAGTTA+GGG - chr7.4:28420388-28420407 MS.gene51840:intron 40.0%
! TGACAGTGTGTTTGGATTAG+CGG + chr7.4:28421213-28421232 None:intergenic 40.0%
! TGCTAGGATTTGGAGTTGTA+TGG - chr7.4:28421617-28421636 MS.gene51840:intron 40.0%
! TGGTCCAATGTCTTGATGAT+TGG + chr7.4:28423341-28423360 None:intergenic 40.0%
! TTTTGCACTTGTGGCAGTTT+TGG + chr7.4:28420325-28420344 None:intergenic 40.0%
!! TATATTATTCATGGCGGGCA+TGG + chr7.4:28422129-28422148 None:intergenic 40.0%
!!! AGCGTTTTTAGTGTTCAGTC+TGG - chr7.4:28420710-28420729 MS.gene51840:intron 40.0%
!!! GTTTTTAGTGTTCAGTCTGG+TGG - chr7.4:28420713-28420732 MS.gene51840:intron 40.0%
AACTGGAACAGTGCAACAGT+TGG - chr7.4:28421396-28421415 MS.gene51840:intron 45.0%
AATCACACAGCACATGCATC+AGG + chr7.4:28421124-28421143 None:intergenic 45.0%
AGCCCAATTCTTGCAGCAAT+AGG + chr7.4:28421667-28421686 None:intergenic 45.0%
AGCGTAGACCGAGTCAAAAT+TGG - chr7.4:28420290-28420309 MS.gene51840:CDS 45.0%
ATAAGAGCCCAGATTCAGTG+AGG + chr7.4:28422790-28422809 None:intergenic 45.0%
ATATGGGCAGACAAACTTGG+TGG - chr7.4:28421586-28421605 MS.gene51840:intron 45.0%
ATGCGTGCCTTTATGGGAAT+CGG - chr7.4:28421703-28421722 MS.gene51840:CDS 45.0%
ATTACGATAAGCCAGCGCTT+AGG + chr7.4:28420974-28420993 None:intergenic 45.0%
ATTGGAAGGAAATGGTTCGC+TGG - chr7.4:28420925-28420944 MS.gene51840:CDS 45.0%
CAAAAGGGTTACTCGCAATC+TGG + chr7.4:28420739-28420758 None:intergenic 45.0%
CAATTTCAGGGCGTATTGCT+GGG - chr7.4:28423511-28423530 MS.gene51840:intron 45.0%
CATCTGTTTCGGACATTCCT+TGG - chr7.4:28422555-28422574 MS.gene51840:CDS 45.0%
CCACAAGTGCAAAACTTAGG+GGG - chr7.4:28420331-28420350 MS.gene51840:CDS 45.0%
CTGCCACAAGTGCAAAACTT+AGG - chr7.4:28420328-28420347 MS.gene51840:CDS 45.0%
GCCACAAGTGCAAAACTTAG+GGG - chr7.4:28420330-28420349 MS.gene51840:CDS 45.0%
GCCGTGTTTGCAAATATTGG+AGG - chr7.4:28422833-28422852 MS.gene51840:intron 45.0%
GGCAGATCATGCAATCAATC+GGG - chr7.4:28423061-28423080 MS.gene51840:intron 45.0%
GGCGAAGCAATTCTATTGGA+AGG - chr7.4:28420911-28420930 MS.gene51840:CDS 45.0%
GGCTCTTATGTGTTCTTCCA+TGG - chr7.4:28422801-28422820 MS.gene51840:intron 45.0%
GGTATATGGGCAGACAAACT+TGG - chr7.4:28421583-28421602 MS.gene51840:intron 45.0%
GTATATAGCGGCATGTACCT+TGG - chr7.4:28422197-28422216 MS.gene51840:intron 45.0%
TAGCTCACCAAAAGATGACC+CGG - chr7.4:28422481-28422500 MS.gene51840:CDS 45.0%
TATGGGCAGACAAACTTGGT+GGG - chr7.4:28421587-28421606 MS.gene51840:intron 45.0%
TCAATTTCAGGGCGTATTGC+TGG - chr7.4:28423510-28423529 MS.gene51840:intron 45.0%
TCGCGAATCGGTGAAAATAG+GGG + chr7.4:28420593-28420612 None:intergenic 45.0%
TGAAACGAAGGTAGATCCTG+TGG - chr7.4:28420871-28420890 MS.gene51840:CDS 45.0%
TGCTGATGTTCAGCAAAGCA+TGG - chr7.4:28420454-28420473 MS.gene51840:intron 45.0%
TGGAGTTGTATGGTGGTCAA+TGG - chr7.4:28421627-28421646 MS.gene51840:intron 45.0%
TTTATGGGAATCGGTGAGGT+TGG - chr7.4:28421712-28421731 MS.gene51840:CDS 45.0%
! CGCAACTTTGGGAAAGTTAG+GGG - chr7.4:28420389-28420408 MS.gene51840:intron 45.0%
! CTTTTGGTGAGCTATATGCC+TGG + chr7.4:28422475-28422494 None:intergenic 45.0%
! GATGACCCTTTTATGGATGG+TGG - chr7.4:28420003-28420022 MS.gene51840:intron 45.0%
! GCAACTTTGGGAAAGTTAGG+GGG - chr7.4:28420390-28420409 MS.gene51840:intron 45.0%
! GCTGATGACCCTTTTATGGA+TGG - chr7.4:28420000-28420019 MS.gene51840:intron 45.0%
! GTCCAAGTGGATTCCAGTTT+CGG - chr7.4:28422151-28422170 MS.gene51840:intron 45.0%
!! AACCTCACCGATTCCCATAA+AGG + chr7.4:28421713-28421732 None:intergenic 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG - chr7.4:28420297-28420316 MS.gene51840:CDS 45.0%
!! ATGTACCTTGGTTCTGTGGT+AGG - chr7.4:28422209-28422228 MS.gene51840:intron 45.0%
!! GAAGCATCTGGTTTGCCTTT+TGG - chr7.4:28422303-28422322 MS.gene51840:intron 45.0%
!!! ATAATTTTTTTTTTTTTACA+GGG - chr7.4:28423283-28423302 MS.gene51840:intron 5.0%
AAAACACTGATGGCCACCCA+AGG + chr7.4:28422265-28422284 None:intergenic 50.0%
AAAAGATGACCCGGATCTCG+GGG - chr7.4:28422490-28422509 MS.gene51840:CDS 50.0%
AACACGGCCATGGTTAACCA+TGG + chr7.4:28422821-28422840 None:intergenic 50.0%
AACACGTGGCACCTCACTTA+GGG - chr7.4:28420258-28420277 MS.gene51840:intron 50.0%
AATACAGCAGGTGTGCTTGC+TGG - chr7.4:28423541-28423560 MS.gene51840:intron 50.0%
AGGCAAACCAGATGCTTCCA+AGG + chr7.4:28422301-28422320 None:intergenic 50.0%
ATGCACAATACTGCCATGGC+GGG + chr7.4:28423135-28423154 None:intergenic 50.0%
ATGGTTCGCTGGTATCTCCT+TGG - chr7.4:28420936-28420955 MS.gene51840:CDS 50.0%
ATTGTGCATGGCATGCAGTC+AGG - chr7.4:28423146-28423165 MS.gene51840:intron 50.0%
CAAAAGATGACCCGGATCTC+GGG - chr7.4:28422489-28422508 MS.gene51840:CDS 50.0%
CAAGTGCAAAACTTAGGGGG+CGG - chr7.4:28420334-28420353 MS.gene51840:CDS 50.0%
CATGCACAATACTGCCATGG+CGG + chr7.4:28423136-28423155 None:intergenic 50.0%
CCAAAAGATGACCCGGATCT+CGG - chr7.4:28422488-28422507 MS.gene51840:CDS 50.0%
CTCCGAAACTGGAATCCACT+TGG + chr7.4:28422156-28422175 None:intergenic 50.0%
CTGGGACTATCGAATACAGC+AGG - chr7.4:28423529-28423548 MS.gene51840:intron 50.0%
CTGGGGCTATCTACTTACTC+AGG - chr7.4:28421440-28421459 MS.gene51840:intron 50.0%
GATCCTGTGGCATCTGATGA+AGG - chr7.4:28420884-28420903 MS.gene51840:CDS 50.0%
GATCTGCTTCTCTCCGAAAC+TGG + chr7.4:28422167-28422186 None:intergenic 50.0%
GCCGACACGTTAGTTAGCAA+AGG - chr7.4:28422863-28422882 MS.gene51840:intron 50.0%
GGCAAACCAGATGCTTCCAA+GGG + chr7.4:28422300-28422319 None:intergenic 50.0%
GGGGCCAAAATCGCAACTTT+GGG - chr7.4:28420378-28420397 MS.gene51840:intron 50.0%
GGTGAGCTATATGCCTGGAA+AGG + chr7.4:28422470-28422489 None:intergenic 50.0%
GTGGCATCTGATGAAGGAAC+AGG - chr7.4:28420890-28420909 MS.gene51840:CDS 50.0%
GTTCCTTCATCAGATGCCAC+AGG + chr7.4:28420890-28420909 None:intergenic 50.0%
TAACACGTGGCACCTCACTT+AGG - chr7.4:28420257-28420276 MS.gene51840:intron 50.0%
TGCCATGCACAATACTGCCA+TGG + chr7.4:28423139-28423158 None:intergenic 50.0%
TGCCTTTATGGGAATCGGTG+AGG - chr7.4:28421708-28421727 MS.gene51840:CDS 50.0%
TTAGGAAGTTGCTGCCACCA+AGG + chr7.4:28420956-28420975 None:intergenic 50.0%
! CCCCCTAAGTTTTGCACTTG+TGG + chr7.4:28420334-28420353 None:intergenic 50.0%
! GACCGAGTCAAAATTGGCCT+TGG - chr7.4:28420296-28420315 MS.gene51840:CDS 50.0%
! TTTTCCTCTACCCCGAGATC+CGG + chr7.4:28422503-28422522 None:intergenic 50.0%
! TTTTCGATACGCCGCCTTCA+AGG + chr7.4:28422535-28422554 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG - chr7.4:28420298-28420317 MS.gene51840:CDS 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG - chr7.4:28420299-28420318 MS.gene51840:CDS 50.0%
!! TTGGATCCCTTGGAAGCATC+TGG - chr7.4:28422291-28422310 MS.gene51840:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG + chr7.4:28420301-28420320 None:intergenic 50.0%
CCAAGCCTACCACAGAACCA+AGG + chr7.4:28422217-28422236 None:intergenic 55.0%
CCATGTCAAAACACCCGCCA+TGG - chr7.4:28423119-28423138 MS.gene51840:intron 55.0%
CGCCATGGCAGTATTGTGCA+TGG - chr7.4:28423134-28423153 MS.gene51840:intron 55.0%
GGGAAGGTCGTGCTAGGATT+TGG - chr7.4:28421607-28421626 MS.gene51840:intron 55.0%
GGGGGCCAAAATCGCAACTT+TGG - chr7.4:28420377-28420396 MS.gene51840:intron 55.0%
GTCTTTGGCACAGCTGCAAC+TGG - chr7.4:28423565-28423584 MS.gene51840:intron 55.0%
GTTCGCTGGTATCTCCTTGG+TGG - chr7.4:28420939-28420958 MS.gene51840:intron 55.0%
TCGGATGCCTTCTCACAGTC+TGG - chr7.4:28423307-28423326 MS.gene51840:intron 55.0%
TTTCCTCTACCCCGAGATCC+GGG + chr7.4:28422502-28422521 None:intergenic 55.0%
! CCGAGATCCGGGTCATCTTT+TGG + chr7.4:28422491-28422510 None:intergenic 55.0%
! CTGATGGCCACCCAAGGTTT+TGG + chr7.4:28422259-28422278 None:intergenic 55.0%
! GGCAGACAAACTTGGTGGGA+AGG - chr7.4:28421591-28421610 MS.gene51840:intron 55.0%
!! CCTTGGTTCTGTGGTAGGCT+TGG - chr7.4:28422214-28422233 MS.gene51840:intron 55.0%
!! CGGCATGTACCTTGGTTCTG+TGG - chr7.4:28422205-28422224 MS.gene51840:intron 55.0%
!!! CCATGGCGGGTGTTTTGACA+TGG + chr7.4:28423122-28423141 None:intergenic 55.0%
CTGACGTGGCACCCTAAGTG+AGG + chr7.4:28420272-28420291 None:intergenic 60.0%
CTTGGTGGGAAGGTCGTGCT+AGG - chr7.4:28421601-28421620 MS.gene51840:intron 60.0%
GGCAGCAACTTCCTAAGCGC+TGG - chr7.4:28420960-28420979 MS.gene51840:intron 60.0%
! GGTGTGCTTGCTGGCGTCTT+TGG - chr7.4:28423550-28423569 MS.gene51840:intron 60.0%
!! GTAGCAGTTTTGGCCCCCCA+AGG - chr7.4:28420214-28420233 MS.gene51840:intron 60.0%
!! TGACTCGGTCTACGCTGACG+TGG + chr7.4:28420286-28420305 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG + chr7.4:28420316-28420335 None:intergenic 60.0%
TGACCCGGATCTCGGGGTAG+AGG - chr7.4:28422496-28422515 MS.gene51840:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 28419639 28423793 28419639 ID=MS.gene51840
chr7.4 mRNA 28419639 28423793 28419639 ID=MS.gene51840.t1;Parent=MS.gene51840
chr7.4 exon 28423739 28423793 28423739 ID=MS.gene51840.t1.exon1;Parent=MS.gene51840.t1
chr7.4 CDS 28423739 28423793 28423739 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28422399 28422766 28422399 ID=MS.gene51840.t1.exon2;Parent=MS.gene51840.t1
chr7.4 CDS 28422399 28422766 28422399 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28421971 28422078 28421971 ID=MS.gene51840.t1.exon3;Parent=MS.gene51840.t1
chr7.4 CDS 28421971 28422078 28421971 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28421703 28421858 28421703 ID=MS.gene51840.t1.exon4;Parent=MS.gene51840.t1
chr7.4 CDS 28421703 28421858 28421703 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28421098 28421313 28421098 ID=MS.gene51840.t1.exon5;Parent=MS.gene51840.t1
chr7.4 CDS 28421098 28421313 28421098 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28420747 28420956 28420747 ID=MS.gene51840.t1.exon6;Parent=MS.gene51840.t1
chr7.4 CDS 28420747 28420956 28420747 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28420522 28420659 28420522 ID=MS.gene51840.t1.exon7;Parent=MS.gene51840.t1
chr7.4 CDS 28420522 28420659 28420522 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28420265 28420366 28420265 ID=MS.gene51840.t1.exon8;Parent=MS.gene51840.t1
chr7.4 CDS 28420265 28420366 28420265 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28420063 28420128 28420063 ID=MS.gene51840.t1.exon9;Parent=MS.gene51840.t1
chr7.4 CDS 28420063 28420128 28420063 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28419828 28419912 28419828 ID=MS.gene51840.t1.exon10;Parent=MS.gene51840.t1
chr7.4 CDS 28419828 28419912 28419828 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
chr7.4 exon 28419639 28419736 28419639 ID=MS.gene51840.t1.exon11;Parent=MS.gene51840.t1
chr7.4 CDS 28419639 28419736 28419639 ID=cds.MS.gene51840.t1;Parent=MS.gene51840.t1
Gene Sequence

>MS.gene51840

ATGGCTATAAGTGGTTTAATTTCCAACAGAAGCTTCACTTCTTTCATTGCTTCAGGTTCATTTCCTCCATCACTTTCAATTTTCCACTAAATTCATTTTATTTTTTCATTCATTCATTCATTCATTCATTCATTATTATTGTTCAATTTTTAAATAAAAAAATTTGGTGGCTGCCAGCATTTTATGAATTGTATTATCTACTTTTTGTTTGTAATTTGAGTTCATTTTTATGTTTTTATTCCTGTCTTTTTGTATTAATTTTTTATGCTTATGAAATTTATTTAGTGCACAATTGAGCTGTAGATAGTAAAAACAAATTTTCCCACAAACTTTTCATGGTAAGAGGAGCAACTTCTCCAATGCTGATGACCCTTTTATGGATGGTGGCAATATTTGTCTATGTGGATATGAATTGATATTTTGATAAAAACTATGGTTAGAGAGAAGATTGTAGTTTCGCTTTCTTTGTAGTTTACTTTAGGCTTAATAGCAGTTTTTGCCCCCTAACTTTAACGAAGTTGCGATTTTGGCCCCTAAGAAAAAAACTACAAAATCGCCCCCTAAGTTTTGCATTTGTAGCAGTTTTGGCCCCCCAAGGCCAAAAAAAAATAAAAAAAATAACACGTGGCACCTCACTTAGGGTGCCACGTCAGCGTAGACCGAGTCAAAATTGGCCTTGGGGGCCAAAACTGCCACAAGTGCAAAACTTAGGGGGCGGTTTTGTAGTTTTTTTTCTTAGGGGGCCAAAATCGCAACTTTGGGAAAGTTAGGGGGCTAAAACTGCTATTAAGCCTTTACTTTAATTAGAGTAATGCTGCTGATGTTCAGCAAAGCATGGATATTATTTTAGGACTTGTATAAATTAGTTTGGATTTTGCACCTCTTGAAACCCTCTAATTTTGGTTTATGTGGATCACTATATTTTAAACTAGGCTTAAATGTAGTTTTGGTCCCCTATTTTCACCGATTCGCGATTTTAGTTGCCTCATTTGTAAATATGATTGTAGTAACTCTTTGATATTGGCAGGAAATGTATATCAGTTAAGAAAGGATCTATCACTTCAAAGAGGAAGCGTTTTTAGTGTTCAGTCTGGTGGCCAGATTGCGAGTAACCCTTTTGCAAAAAGTAGAAGTCATATTGAACAAAGAGAAGTATACGGACTAGGAGTAAGAAAGCTCAGTAAGATAAATAAAGTCTGTGTTCATTACAGTTCAGAAGAATATGACATTGATGAAACGAAGGTAGATCCTGTGGCATCTGATGAAGGAACAGGCGAAGCAATTCTATTGGAAGGAAATGGTTCGCTGGTATCTCCTTGGTGGCAGCAACTTCCTAAGCGCTGGCTTATCGTAATGCTGTGTTTTACAGCTTTTCTTTTATGCAACATGGACCGTGTGAGTATCTTATCTTGGTATTCACAATCTAAATTACTATGTGTACAATGTATGTTTGGATTGGTGACGGATCTTTCATTATCGCTTCCTGATGCATGTGCTGTGTGATTTTGTTGAAGCTTCAATGTGTAGCTTTCACACTACCGTGATTTTGCACTGTGATTCTGTCAAATTTACCGCTAATCCAAACACACTGTCATATATCTTAATGTCTGCCATGTCTCAAATTTCGAATGTAGTTGTGTTTTACAATTTTCATATTGTTGATTATCGAGTATATATCTTAATTCACAAATTTTCCTTCATATTGTAATATACAGGTAAATATGAGCATTGCGATACTTCCAATGTCACAAGAGTTTAACTGGAACAGTGCAACAGTTGGCCTAATTCAGTCATCTTTTTTCTGGGGCTATCTACTTACTCAGGTGTGATTGCTATGGGCACTTCATAGATCACATTAGCCTAACAAGAATTGATTTCATATATGCAGTAACCTAGCATAACATTGTTATGTTATGATGGTTTTTTTCTTCTTAGATTCTTGGTGGTATATGGGCAGACAAACTTGGTGGGAAGGTCGTGCTAGGATTTGGAGTTGTATGGTGGTCAATGGCAACAATTCTAACACCTATTGCTGCAAGAATTGGGCTACCTTGTTTGCTTATTATGCGTGCCTTTATGGGAATCGGTGAGGTTGGTACATTCTATAGCAATATTACATGTTTCCAGTAACTAGTCATATGGTTAGTTTATCCATCTTTTTCGTGTTATGCAAAACCAATTATCAGTTTTGCTATGAACTTATGAGTATATAAGATTAAGTTGTTTCTCTAAACAAATTAAGTTGTATTCAAATACAGCCAAATCGAAGATAGTTTCTCTTTTGAATGGTCTCATGTTCAAAGTCCGTGTAGAGTATAGCTTACTAAAATAAGTTTATGAGCAAACCACAAGCTGTATTTATATGTTATTTTTTTCAATGACAAATGTTTGTAAGCAAGTGCTTATATCATGAAATATGTACTATTAAGCTCTTTCAAACGCCCTCTTAACACAAAATAATTCTAACTATTTGTTTTCAGGGTGTAGCCATGCCCGCCATGAATAATATACTGTCCAAGTGGATTCCAGTTTCGGAGAGAAGCAGATCACTTTCGCTAGTATATAGCGGCATGTACCTTGGTTCTGTGGTAGGCTTGGCATTCTCACCTTTTCTTATCCAAAACCTTGGGTGGCCATCAGTGTTTTACTCATTTGGATCCCTTGGAAGCATCTGGTTTGCCTTTTGGTTGAGAAAAGTAAGTCAGCTATCCCTTAATTTCGATGAAATCTACTTCGTGTATCTTGTAGCAACACCATATCACTATTCATGATATGTTAAATGGAAGGGGCACTCCTCCTTTGTTCTTTCTTGGCAAGTAAACTCATTTCCTTTCCAGGCATATAGCTCACCAAAAGATGACCCGGATCTCGGGGTAGAGGAAAAAAAGCTCATCCTTGAAGGCGGCGTATCGAAAACATCTGTTTCGGACATTCCTTGGAAATTAATTCTATCAAAAGCACCAGTTTGGGCTCTTATAATCTCTCATTTCTGCCACAATTGGGGAACATTTATTCTATTAACATGGATGCCTACTTACTATAATCAGGTTATTAACCTATGCTTTGTATAATACATTTTTTACATCACTTTCTACAGTCCATTGAATCAACAAGCTAATTTGTCATTTTATCAGGTTCTGAAGTTCAACCTCACTGAATCTGGGCTCTTATGTGTTCTTCCATGGTTAACCATGGCCGTGTTTGCAAATATTGGAGGGTGGATAGCCGACACGTTAGTTAGCAAAGGTGTTTCCATAACAACTGTTCGAAAGGTATGATAACCACTTGTTACTGAAATATTGTCATGCCAGATCAACAACTATTACAAATAGTGTTCTTAACAGAATGCCGTATAGAAGGAAATTGTTCGGATTCATTTCACACTTTAAAATTATTCTGCTCTTAATATATATGGATAATATGGCAGATCATGCAATCAATCGGGTTTCTAGGTCCTGCCTTTTTTCTTACGCAACTGAGCCATGTCAAAACACCCGCCATGGCAGTATTGTGCATGGCATGCAGTCAGGTTTGAGCTAGATCAACATTTTCCTTTAGTTTGAATTCCTCAAATTTTGGCACTTTTATGCCAATACAACATGTTTGCATATGATTTCCATATATGCAGCCACCTAATTCAAACCATAATTTTTTTTTTTTTACAGGGATCGGATGCCTTCTCACAGTCTGGTCTTTATTCCAATCATCAAGACATTGGACCACGTTATGCTGTGAGTAATTTCTTTTACATATACCATGACCAGTAAAATTTCATAGTGCGTGAAATTCTGGAACATATTCCATTATACAAGTCATCACTCAGTTATTTTGTTTATTCAACAATATCTCTGTATCAGAATGCTCACGAGTTTCAATTTCAGGGCGTATTGCTGGGACTATCGAATACAGCAGGTGTGCTTGCTGGCGTCTTTGGCACAGCTGCAACTGGATACATACTTCAAAGAGGTCCGAGAGTTCTCCACATTCATTTCGGAGTTTACACTTCTTTGCAATTTATATATCATTGGTTTCACTTATATGTGATTTTTCATTGCAGGTTCTTGGAATGACGTGTTTAAGGTTTCTGTTGCATTATACATAATAGGCACACTGGTATGGAATATATTTTCTACTGGGGAGAAGATTCTTGACTGA

Protein sequence

>MS.gene51840.t1

MAISGLISNRSFTSFIASGNVYQLRKDLSLQRGSVFSVQSGGQIASNPFAKSRSHIEQREVYGLGVRKLSKINKVCVHYSSEEYDIDETKVDPVASDEGTGEAILLEGNGSLVSPWWQQLPKRWLIVMLCFTAFLLCNMDRVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKVVLGFGVVWWSMATILTPIAARIGLPCLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLSLVYSGMYLGSVVGLAFSPFLIQNLGWPSVFYSFGSLGSIWFAFWLRKAYSSPKDDPDLGVEEKKLILEGGVSKTSVSDIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSKGVSITTVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVALYIIGTLVWNIFSTGEKILD