AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044005

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044005.t1 MTR_1g020080 91.014 434 11 4 1 415 1 425 0.0 745
MS.gene044005.t1 MTR_1g020080 90.492 305 10 3 1 286 1 305 0.0 561
MS.gene044005.t1 MTR_3g101370 65.766 444 99 13 1 415 1 420 0.0 525
MS.gene044005.t1 MTR_4g086600 60.129 311 77 6 94 366 114 415 2.46e-125 370
MS.gene044005.t1 MTR_3g101370 64.169 307 72 8 1 280 1 296 1.98e-120 352
MS.gene044005.t1 MTR_4g131970 54.412 340 117 7 94 407 72 399 1.13e-113 339
MS.gene044005.t1 MTR_2g022950 51.233 365 141 6 70 407 34 388 3.85e-112 335
MS.gene044005.t1 MTR_2g097960 46.629 356 131 6 88 396 7 350 1.64e-101 308
MS.gene044005.t1 MTR_2g022950 50.840 238 100 2 70 290 34 271 5.10e-73 230
MS.gene044005.t1 MTR_2g022950 51.250 240 100 2 70 292 34 273 1.56e-72 229
MS.gene044005.t1 MTR_3g109090 28.136 295 168 7 96 358 44 326 1.05e-28 117
MS.gene044005.t1 MTR_4g124940 27.586 290 175 7 96 358 46 327 1.24e-28 116
MS.gene044005.t1 MTR_3g109090 28.136 295 168 7 96 358 60 342 1.25e-28 117
MS.gene044005.t1 MTR_8g022050 27.491 291 175 8 96 358 62 344 2.16e-26 110
MS.gene044005.t1 MTR_1g019150 28.239 301 189 7 84 365 108 400 1.28e-25 109
MS.gene044005.t1 MTR_1g019150 26.022 269 154 7 97 345 33 276 5.51e-17 83.6
MS.gene044005.t1 MTR_1g019150 29.282 181 85 5 190 350 33 190 8.53e-12 67.4
MS.gene044005.t1 MTR_4g085540 28.866 291 171 8 98 365 124 401 1.38e-25 109
MS.gene044005.t1 MTR_4g085540 26.866 268 153 9 97 345 35 278 2.51e-17 84.7
MS.gene044005.t1 MTR_4g085540 28.649 185 91 4 185 350 30 192 3.50e-13 71.6
MS.gene044005.t1 MTR_7g102730 26.573 286 165 9 97 362 11 271 5.19e-23 101
MS.gene044005.t1 MTR_7g102730 27.239 268 165 8 98 345 100 357 6.63e-17 83.2
MS.gene044005.t1 MTR_3g102040 25.784 287 185 7 98 365 114 391 5.84e-21 95.5
MS.gene044005.t1 MTR_3g102040 28.425 292 158 10 97 367 25 286 9.42e-17 82.8
MS.gene044005.t1 MTR_3g102040 28.947 190 86 4 184 350 19 182 1.45e-13 72.8
MS.gene044005.t1 MTR_1g097440 28.975 283 153 11 95 356 29 284 3.56e-19 90.1
MS.gene044005.t1 MTR_1g097440 25.087 287 188 7 98 365 120 398 5.06e-19 89.7
MS.gene044005.t1 MTR_1g061870 24.476 286 171 8 97 362 16 276 3.67e-18 87.0
MS.gene044005.t1 MTR_1g061870 25.088 283 146 9 98 344 105 357 7.15e-12 67.4
MS.gene044005.t1 MTR_6g040070 24.825 286 189 6 98 365 17 294 4.63e-17 84.0
MS.gene044005.t1 MTR_6g040190 25.436 287 183 10 98 365 115 389 1.19e-16 82.4
MS.gene044005.t1 MTR_6g040190 25.651 269 153 7 94 343 23 263 3.94e-16 80.9
MS.gene044005.t1 MTR_6g040190 27.174 184 93 4 190 354 26 187 7.11e-12 67.8
MS.gene044005.t1 MTR_1g056520 25.728 206 128 4 87 269 99 302 4.22e-15 75.9
MS.gene044005.t1 MTR_4g104470 27.225 191 100 5 94 256 120 299 6.13e-14 72.4
MS.gene044005.t1 MTR_4g104470 24.490 196 112 4 188 363 121 300 3.48e-11 64.3
MS.gene044005.t1 MTR_3g065190 25.943 212 128 6 81 277 16 213 6.82e-14 73.2
MS.gene044005.t1 MTR_6g004810 24.880 209 128 4 64 258 23 216 4.89e-12 67.4
MS.gene044005.t1 MTR_3g079200 42.029 69 39 1 289 356 232 300 2.21e-11 65.9
MS.gene044005.t1 MTR_1g045510 28.409 176 104 5 98 256 115 285 2.59e-11 64.3
MS.gene044005.t1 MTR_1g064230 26.425 193 109 3 95 254 83 275 7.23e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044005.t1 AT1G47490 57.882 425 125 14 18 415 35 432 4.42e-157 450
MS.gene044005.t1 AT1G47500 59.947 377 105 9 63 415 80 434 1.31e-146 424
MS.gene044005.t1 AT3G19130 51.190 420 149 10 1 374 1 410 2.77e-125 369
MS.gene044005.t1 AT1G49600 52.105 380 128 10 56 397 71 434 1.26e-120 358
MS.gene044005.t1 AT1G49600 54.118 340 109 7 56 358 71 400 1.66e-116 347
MS.gene044005.t1 AT1G49600 54.118 340 109 7 56 358 71 400 1.66e-116 347
MS.gene044005.t1 AT1G11650 50.000 354 132 8 37 362 2 338 9.13e-102 308
MS.gene044005.t1 AT4G27000 52.542 295 113 3 90 366 74 359 1.09e-100 306
MS.gene044005.t1 AT5G19350 47.238 362 146 6 78 407 6 354 8.27e-100 304
MS.gene044005.t1 AT5G19350 46.721 366 146 6 78 407 6 358 3.98e-99 302
MS.gene044005.t1 AT5G54900 49.112 338 139 7 80 395 44 370 4.37e-99 301
MS.gene044005.t1 AT1G47490 54.138 290 92 10 18 281 35 309 4.50e-94 285
MS.gene044005.t1 AT1G11650 48.758 322 120 8 37 330 2 306 3.35e-87 268
MS.gene044005.t1 AT1G47500 55.918 245 75 5 63 284 80 314 2.35e-84 261
MS.gene044005.t1 AT1G54080 30.847 295 160 10 96 358 63 345 7.23e-31 123
MS.gene044005.t1 AT1G54080 30.435 299 160 10 96 358 63 349 2.11e-30 122
MS.gene044005.t1 AT3G14100 30.612 294 162 11 96 358 59 341 1.54e-28 116
MS.gene044005.t1 AT1G17370 28.667 300 160 10 96 358 54 336 6.03e-27 112
MS.gene044005.t1 AT1G17370 28.956 297 160 10 96 358 54 333 8.19e-27 111
MS.gene044005.t1 AT2G23350 27.273 286 182 7 98 365 136 413 4.32e-25 108
MS.gene044005.t1 AT2G23350 28.839 267 143 10 97 342 47 287 6.27e-18 86.7
MS.gene044005.t1 AT1G71770 27.907 344 202 10 98 413 148 473 5.08e-25 108
MS.gene044005.t1 AT1G71770 26.441 295 165 11 95 365 58 324 1.18e-19 91.7
MS.gene044005.t1 AT1G71770 27.907 344 202 10 98 413 148 473 5.08e-25 108
MS.gene044005.t1 AT1G71770 26.441 295 165 11 95 365 58 324 1.18e-19 91.7
MS.gene044005.t1 AT4G34110 27.431 288 179 7 98 365 126 403 1.83e-24 106
MS.gene044005.t1 AT4G34110 28.044 271 144 9 95 342 35 277 2.68e-20 93.6
MS.gene044005.t1 AT4G34110 27.488 211 103 5 163 350 11 194 9.15e-14 73.6
MS.gene044005.t1 AT1G34140 26.354 277 176 7 98 356 33 299 4.70e-23 100
MS.gene044005.t1 AT1G49760 25.000 288 186 6 98 365 135 412 9.46e-22 98.2
MS.gene044005.t1 AT1G49760 25.283 265 155 8 97 342 46 286 1.40e-15 79.3
MS.gene044005.t1 AT1G49760 25.000 288 186 6 98 365 135 412 9.46e-22 98.2
MS.gene044005.t1 AT1G49760 25.283 265 155 8 97 342 46 286 1.40e-15 79.3
MS.gene044005.t1 AT1G22760 28.315 279 172 9 98 356 138 408 1.20e-20 94.7
MS.gene044005.t1 AT1G22760 25.000 292 173 10 95 365 48 314 9.26e-17 82.8
MS.gene044005.t1 AT2G36660 24.648 284 171 9 97 362 25 283 1.83e-18 88.2
MS.gene044005.t1 AT2G36660 23.667 300 177 8 98 367 114 391 1.53e-11 66.6
MS.gene044005.t1 AT3G16380 26.022 269 165 6 98 345 114 369 9.88e-16 79.3
MS.gene044005.t1 AT3G16380 25.912 274 160 7 97 350 22 272 2.32e-15 78.2
MS.gene044005.t1 AT3G13224 27.551 196 123 4 81 262 4 194 6.77e-15 75.9
MS.gene044005.t1 AT3G13224 28.177 181 111 4 96 262 10 185 1.91e-14 74.7
MS.gene044005.t1 AT2G18510 24.883 213 131 6 81 278 16 214 3.02e-13 71.2
MS.gene044005.t1 AT3G52380 24.615 195 111 4 91 255 111 299 1.68e-12 68.6
MS.gene044005.t1 AT2G37220 26.316 190 117 4 187 353 89 278 1.00e-11 65.9
MS.gene044005.t1 AT2G37220 26.425 193 104 4 98 254 93 283 2.87e-11 64.3
MS.gene044005.t1 AT1G07360 42.029 69 39 1 289 356 232 300 1.16e-11 66.6
MS.gene044005.t1 AT3G13224 27.168 173 109 3 81 239 4 173 3.48e-11 63.2
MS.gene044005.t1 AT1G60000 27.624 181 104 5 95 255 84 257 3.95e-11 63.5

Find 118 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCCATATCCATCATAAAT+AGG 0.205271 1.2:+3712456 None:intergenic
ACTTGTACCTGTTTGCAAAT+TGG 0.251629 1.2:+3712848 None:intergenic
TGTGAGTGGCCTCCATAAAT+AGG 0.276662 1.2:+3712375 None:intergenic
TAAATAGGGGATGGAAAATA+TGG 0.277141 1.2:+3712471 None:intergenic
ATCCATATCCATCATAAATA+GGG 0.292778 1.2:+3712457 None:intergenic
TCCCCTATTTATGATGGATA+TGG 0.317090 1.2:-3712459 MS.gene044005:CDS
ATCAAGCTTTCCGTTTGAAC+TGG 0.327481 1.2:-3714227 MS.gene044005:CDS
TATGTCGGTTACCCTATTTA+TGG 0.335151 1.2:-3712387 MS.gene044005:CDS
AGCAAACTGTTCGTCTCTCT+TGG 0.360690 1.2:-3712682 MS.gene044005:CDS
AGCGGTATTTCAGAGGGTTA+TGG 0.369552 1.2:-3714327 MS.gene044005:CDS
GCAAACTGTTCGTCTCTCTT+GGG 0.373848 1.2:-3712681 MS.gene044005:CDS
CGGAAAGCTTGATCAGCATT+TGG 0.391386 1.2:+3714237 None:intergenic
GTTGTTTATGATGCCAATAC+TGG 0.400315 1.2:-3714065 MS.gene044005:CDS
TTCAGAGGGTTATGGATTTG+TGG 0.411843 1.2:-3714319 MS.gene044005:CDS
TTTCCATCCCCTATTTATGA+TGG 0.416044 1.2:-3712465 MS.gene044005:CDS
AAGCAGACATTCTCTCAGTA+TGG 0.431532 1.2:-3712919 MS.gene044005:CDS
CCGCAATCCAGCATATAAAC+AGG 0.437492 1.2:-3712657 MS.gene044005:intron
GGCTATGGATTCGTCAGGTT+CGG 0.440915 1.2:-3714032 MS.gene044005:CDS
TGATTCATTATAGATATTGT+TGG 0.441103 1.2:-3712976 MS.gene044005:intron
GCCCTTTGAACGGCCAGTAT+TGG 0.441892 1.2:+3714052 None:intergenic
GAGATTGCCTGTTTATATGC+TGG 0.442204 1.2:+3712650 None:intergenic
GCCAATACTGGCCGTTCAAA+GGG 0.443933 1.2:-3714053 MS.gene044005:CDS
AAGCTAAACGGGACAATGAT+TGG 0.446192 1.2:-3712707 MS.gene044005:CDS
CAAAGTCTTATTCTCTCCAT+TGG 0.446326 1.2:+3716009 None:intergenic
CTCGATGTTGGAAGCTGGGC+CGG 0.446754 1.2:-3712495 MS.gene044005:CDS
AGGCTTTGCAGAAGCTAAAC+GGG 0.447114 1.2:-3712718 MS.gene044005:CDS
TTAGGCTCGATGTTGGAAGC+TGG 0.453457 1.2:-3712500 MS.gene044005:CDS
GAGGCTTTGCAGAAGCTAAA+CGG 0.454111 1.2:-3712719 MS.gene044005:CDS
ATGGAGAGAATAAGACTTTG+TGG 0.457513 1.2:-3716006 MS.gene044005:CDS
GGATTGGTGATTTGCATAGC+TGG 0.459794 1.2:-3715985 MS.gene044005:CDS
CACTGTTGTGGTACCGCCAC+CGG 0.462244 1.2:+3716202 None:intergenic
AGAATCTGCTTCAGATTGGC+TGG 0.467448 1.2:+3713092 None:intergenic
TCTAGCAGGCCCATGCGTAT+TGG 0.469784 1.2:-3713957 MS.gene044005:CDS
AAACCACAGCCCTTACCAAC+AGG 0.471104 1.2:+3712874 None:intergenic
TATTTAGGAGGTCAGTCAAA+TGG 0.473194 1.2:-3713120 MS.gene044005:intron
GTGAGTGGCCTCCATAAATA+GGG 0.473583 1.2:+3712376 None:intergenic
CAAAGGGCTATGGATTCGTC+AGG 0.476987 1.2:-3714037 MS.gene044005:CDS
TTTCAGAAATAATGCTGAAG+AGG 0.476993 1.2:-3712738 MS.gene044005:intron
GATTGGCCATACCTTGTTGA+TGG 0.477027 1.2:+3713908 None:intergenic
ACAACCACCGGCACCGGTGG+CGG 0.480339 1.2:-3716215 MS.gene044005:CDS
GCAACAACGACAACAACCAC+CGG 0.486450 1.2:-3716227 MS.gene044005:CDS
TTGTTGCTTGTTCGTCGTCT+CGG 0.487240 1.2:+3716243 None:intergenic
TGTTAAGATACCTGTTGGTA+AGG 0.488145 1.2:-3712884 MS.gene044005:CDS
GGCATTACCATCGCCGCTGT+TGG 0.497740 1.2:+3716163 None:intergenic
TGCCAATACTGGCCGTTCAA+AGG 0.499946 1.2:-3714054 MS.gene044005:CDS
TGCTTGTTCGTCGTCTCGGA+CGG 0.499971 1.2:+3716247 None:intergenic
TTGATGGCAGATGATTTCCT+TGG 0.502464 1.2:+3713924 None:intergenic
TGTGGTACCGCCACCGGTGC+CGG 0.505054 1.2:+3716208 None:intergenic
CAGAATCAGCATGGATCCAA+TGG 0.506359 1.2:-3716025 MS.gene044005:CDS
ATCAGCTTACTTGTTGTGAG+TGG 0.507595 1.2:+3712361 None:intergenic
ATACCTGTTGGTAAGGGCTG+TGG 0.509634 1.2:-3712877 MS.gene044005:CDS
TAGGCTCGATGTTGGAAGCT+GGG 0.509979 1.2:-3712499 MS.gene044005:CDS
TAAGCTAGAGGATACATACT+TGG 0.510023 1.2:+3712408 None:intergenic
AGATGAAAGCGAGAGATCTC+AGG 0.512411 1.2:-3714009 MS.gene044005:CDS
TTCATTATAGATATTGTTGG+AGG 0.515050 1.2:-3712973 MS.gene044005:intron
ACGACAACAACCACCGGCAC+CGG 0.518451 1.2:-3716221 MS.gene044005:CDS
TTGTAGAATCTGCTTCAGAT+TGG 0.518743 1.2:+3713088 None:intergenic
GCAGTATCCAACAGCGGCGA+TGG 0.519510 1.2:-3716170 MS.gene044005:CDS
AACATTTAGCACAGGAGACA+AGG 0.521571 1.2:-3714202 MS.gene044005:CDS
CGTTGATGAATCTGAACCGT+TGG 0.521826 1.2:+3716270 None:intergenic
TCAAGCTTTCCGTTTGAACT+GGG 0.522222 1.2:-3714226 MS.gene044005:CDS
TGATGGTGATGGTGGTGATA+AGG 0.523041 1.2:+3716094 None:intergenic
TAAATGTTGCCCAGTTCAAA+CGG 0.531857 1.2:+3714217 None:intergenic
CTGTAAAACTTTCTCAGCTG+TGG 0.534907 1.2:+3714281 None:intergenic
TGGTGGTGATAAGGAACATA+TGG 0.535481 1.2:+3716103 None:intergenic
ACTGGCCGTTCAAAGGGCTA+TGG 0.536195 1.2:-3714047 MS.gene044005:CDS
AACTGGGCAACATTTAGCAC+AGG 0.537123 1.2:-3714210 MS.gene044005:CDS
GCCTCTGTTAAGATACCTGT+TGG 0.543628 1.2:-3712889 MS.gene044005:CDS
CTTATTGCGAATAACCTTGA+CGG 0.546836 1.2:+3714353 None:intergenic
TGATGATTCTGATGCTGATG+TGG 0.547295 1.2:+3716046 None:intergenic
GAGAATAAGACTTTGTGGAT+TGG 0.547399 1.2:-3716001 MS.gene044005:CDS
CTTGGGTCATGATGAGGAGA+AGG 0.551922 1.2:+3712426 None:intergenic
TAACAGTTTAGGCTCGATGT+TGG 0.554172 1.2:-3712507 MS.gene044005:intron
ACAACAACCACCGGCACCGG+TGG 0.554952 1.2:-3716218 MS.gene044005:CDS
ACGGTGTTTACTGTTCTAGC+AGG 0.560152 1.2:-3713971 MS.gene044005:CDS
TATCCATCATAAATAGGGGA+TGG 0.565686 1.2:+3712462 None:intergenic
GTCGGTTACCCTATTTATGG+AGG 0.568554 1.2:-3712384 MS.gene044005:CDS
GGCGGCGGCGCGTAATGTTG+AGG 0.570717 1.2:+3716124 None:intergenic
GTTAAGATACCTGTTGGTAA+GGG 0.572861 1.2:-3712883 MS.gene044005:CDS
TGATGTGGCGGCACGTGCAA+CGG 0.578285 1.2:+3716061 None:intergenic
CAAACTGTTCGTCTCTCTTG+GGG 0.582336 1.2:-3712680 MS.gene044005:CDS
GCCGCTGTTGGATACTGCAT+CGG 0.584942 1.2:+3716175 None:intergenic
TGGTGATTTGCATAGCTGGA+TGG 0.585911 1.2:-3715981 MS.gene044005:CDS
AGTTGCAGCACCAATACGCA+TGG 0.588428 1.2:+3713947 None:intergenic
TAAGCACAGCGGTATTTCAG+AGG 0.593724 1.2:-3714334 MS.gene044005:CDS
TACATACTTGGGTCATGATG+AGG 0.594093 1.2:+3712420 None:intergenic
GTTGAAACTGATGGTGATGG+TGG 0.595592 1.2:+3716086 None:intergenic
AGGGGATGGAAAATATGGAC+CGG 0.598421 1.2:+3712476 None:intergenic
TTTGCAGATTACCTCCGTCA+AGG 0.598780 1.2:-3714367 MS.gene044005:intron
TCCATATCCATCATAAATAG+GGG 0.599986 1.2:+3712458 None:intergenic
CAGAATCATCAGAATCAGCA+TGG 0.613279 1.2:-3716034 MS.gene044005:CDS
AAGCACAGCGGTATTTCAGA+GGG 0.617802 1.2:-3714333 MS.gene044005:CDS
GTATTGGTGCTGCAACTCCA+AGG 0.620390 1.2:-3713941 MS.gene044005:CDS
GTTGCAGCACCAATACGCAT+GGG 0.620904 1.2:+3713948 None:intergenic
ATTAAGATGCAACAAACCAA+CGG 0.621224 1.2:-3716286 None:intergenic
ATGTATCCTCTAGCTTATGT+CGG 0.628707 1.2:-3712402 MS.gene044005:CDS
GGCGGCGCGTAATGTTGAGG+TGG 0.632098 1.2:+3716127 None:intergenic
AAGCTAGAGGATACATACTT+GGG 0.633232 1.2:+3712409 None:intergenic
CGAATCCATAGCCCTTTGAA+CGG 0.643491 1.2:+3714042 None:intergenic
GAAATCATCTGCCATCAACA+AGG 0.643604 1.2:-3713919 MS.gene044005:intron
GCAACGGTTGTTGAAACTGA+TGG 0.643635 1.2:+3716077 None:intergenic
TGATAAGGAACATATGGCGG+CGG 0.643784 1.2:+3716109 None:intergenic
CCTGTTTATATGCTGGATTG+CGG 0.648162 1.2:+3712657 None:intergenic
TGCATCGGAATCCACTGTTG+TGG 0.651631 1.2:+3716190 None:intergenic
CGGTGGCGGTACCACAACAG+TGG 0.654273 1.2:-3716201 MS.gene044005:CDS
TGATTCTGATGCTGATGTGG+CGG 0.656281 1.2:+3716049 None:intergenic
TAGCACAGGAGACAAGGGAT+CGG 0.659903 1.2:-3714196 MS.gene044005:CDS
ACATTTAGCACAGGAGACAA+GGG 0.668527 1.2:-3714201 MS.gene044005:CDS
GGTACCGCCACCGGTGCCGG+TGG 0.668876 1.2:+3716211 None:intergenic
CAGGCTATGACTCAAATGAA+CGG 0.669010 1.2:-3713990 MS.gene044005:CDS
TGGTGATAAGGAACATATGG+CGG 0.679076 1.2:+3716106 None:intergenic
TGAGGTGGCATCATGTGATG+TGG 0.687592 1.2:+3716142 None:intergenic
GTTGTTGAAACTGATGGTGA+TGG 0.688940 1.2:+3716083 None:intergenic
GGGTAACCGACATAAGCTAG+AGG 0.694641 1.2:+3712396 None:intergenic
ACCAACAGGTATCTTAACAG+AGG 0.696199 1.2:+3712888 None:intergenic
ATTGCGAATAACCTTGACGG+AGG 0.706195 1.2:+3714356 None:intergenic
TCCGATGCAGTATCCAACAG+CGG 0.717111 1.2:-3716176 MS.gene044005:CDS
GTTATTCGCAATAAGCACAG+CGG 0.787456 1.2:-3714345 MS.gene044005:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATTTTTCAATCTATA+AGG + chr1.2:3713403-3713422 None:intergenic 10.0%
!! TATTGTTAAAAATTTGTCAT+TGG - chr1.2:3712936-3712955 MS.gene044005:CDS 15.0%
!!! ATTGATTAGCTATTTAAAAT+TGG + chr1.2:3715647-3715666 None:intergenic 15.0%
!!! GAAATTTTATTCTTTCATTT+GGG - chr1.2:3714779-3714798 MS.gene044005:intron 15.0%
!!! TGAAATTTTATTCTTTCATT+TGG - chr1.2:3714778-3714797 MS.gene044005:intron 15.0%
!! AGACTTCAAAAAAAATTATG+AGG + chr1.2:3716045-3716064 None:intergenic 20.0%
!! ATTTGTCATTGGAAATTTAT+AGG - chr1.2:3712947-3712966 MS.gene044005:CDS 20.0%
!! CTTAATAATGATAACAGTTT+AGG - chr1.2:3716124-3716143 MS.gene044005:CDS 20.0%
!! GGAAATTTATAGGTTAAATA+TGG - chr1.2:3712957-3712976 MS.gene044005:CDS 20.0%
!! TAAATGAAGTTGAAAATACT+TGG - chr1.2:3713752-3713771 MS.gene044005:intron 20.0%
!! TATGTTAAACGAAAATTGAT+GGG - chr1.2:3714028-3714047 MS.gene044005:CDS 20.0%
!! TGATTCATTATAGATATTGT+TGG - chr1.2:3715666-3715685 MS.gene044005:intron 20.0%
!! TTTGATATAGAATCCTATTA+AGG - chr1.2:3714227-3714246 MS.gene044005:CDS 20.0%
!!! AAGTCTATATTTTACTTCTT+TGG - chr1.2:3713937-3713956 MS.gene044005:CDS 20.0%
!!! TTTATTTTCAACTTCAAATG+TGG + chr1.2:3713577-3713596 None:intergenic 20.0%
! AAACAATAACCAAACATGTT+TGG + chr1.2:3712739-3712758 None:intergenic 25.0%
! AAGACATAAGAATATCATTC+AGG + chr1.2:3714978-3714997 None:intergenic 25.0%
! AATCTTTGTGAATTGAAGAA+TGG - chr1.2:3713603-3713622 MS.gene044005:intron 25.0%
! ACAAAAGCAAATAATGTGAT+TGG + chr1.2:3714754-3714773 None:intergenic 25.0%
! ACATGTCAATACATAAAAGT+TGG + chr1.2:3713972-3713991 None:intergenic 25.0%
! ATCACAATTTAATGCATGTT+TGG + chr1.2:3713733-3713752 None:intergenic 25.0%
! ATCCATATCCATCATAAATA+GGG + chr1.2:3716188-3716207 None:intergenic 25.0%
! GAATCTGAATTCTATAACTT+TGG + chr1.2:3715407-3715426 None:intergenic 25.0%
! GTAAAATATAGACTTCTAGT+AGG + chr1.2:3713932-3713951 None:intergenic 25.0%
! GTATGTTAAACGAAAATTGA+TGG - chr1.2:3714027-3714046 MS.gene044005:CDS 25.0%
! TATAGTCTTCTGTTTAGATT+TGG - chr1.2:3714944-3714963 MS.gene044005:intron 25.0%
! TATCCATATCCATCATAAAT+AGG + chr1.2:3716189-3716208 None:intergenic 25.0%
! TCAATATGAGGTAATATAGA+TGG + chr1.2:3714853-3714872 None:intergenic 25.0%
! TTCATTATAGATATTGTTGG+AGG - chr1.2:3715669-3715688 MS.gene044005:intron 25.0%
! TTCGTTTAACATACATCAAA+TGG + chr1.2:3714021-3714040 None:intergenic 25.0%
! TTTATTCTTTCATTTGGGAA+AGG - chr1.2:3714784-3714803 MS.gene044005:intron 25.0%
! TTTGTCAAAGACAAATTGAA+GGG + chr1.2:3715304-3715323 None:intergenic 25.0%
!! AAAGTTTTACAGAATTATGC+TGG - chr1.2:3714372-3714391 MS.gene044005:intron 25.0%
!! AACACAAAACACATTCATTT+TGG + chr1.2:3713789-3713808 None:intergenic 25.0%
!! ATGGTTTGCAATAATAAATG+TGG - chr1.2:3713226-3713245 MS.gene044005:intron 25.0%
!! GAAGTATAACATTTTATTCC+AGG + chr1.2:3713827-3713846 None:intergenic 25.0%
!! TTTTGTCAAAGACAAATTGA+AGG + chr1.2:3715305-3715324 None:intergenic 25.0%
!!! AACTTTTATGTATTGACATG+TGG - chr1.2:3713971-3713990 MS.gene044005:CDS 25.0%
!!! TGTTTTTTTCCAAACATGTT+TGG - chr1.2:3712727-3712746 MS.gene044005:CDS 25.0%
!!! TTTTGTCTGTTTCCTTATTT+AGG - chr1.2:3715507-3715526 MS.gene044005:intron 25.0%
AAGCACAAAATTAGTAGCAT+AGG + chr1.2:3713655-3713674 None:intergenic 30.0%
ATGCATGTTTGGAAATATGT+TGG + chr1.2:3713722-3713741 None:intergenic 30.0%
CACAAATTCAATTTCATGAC+AGG + chr1.2:3716094-3716113 None:intergenic 30.0%
CTTGAGTTTGTGATAAATGA+AGG - chr1.2:3713884-3713903 MS.gene044005:intron 30.0%
GGACAAAATCAAAATACAGA+TGG + chr1.2:3715386-3715405 None:intergenic 30.0%
GTTCCTTAAAGAGACTAAAA+TGG - chr1.2:3713052-3713071 MS.gene044005:CDS 30.0%
GTTTCTTTAATGTTATAGCC+TGG - chr1.2:3713806-3713825 MS.gene044005:intron 30.0%
TAAATAGGGGATGGAAAATA+TGG + chr1.2:3716174-3716193 None:intergenic 30.0%
TAGTTACCTCATGAAAATCT+TGG - chr1.2:3715236-3715255 MS.gene044005:intron 30.0%
TCCATATCCATCATAAATAG+GGG + chr1.2:3716187-3716206 None:intergenic 30.0%
TCCTTAGAATGAAATTTGGA+AGG - chr1.2:3713550-3713569 MS.gene044005:intron 30.0%
TCCTTCCAAATTTCATTCTA+AGG + chr1.2:3713554-3713573 None:intergenic 30.0%
TCCTTCCTTAGAATGAAATT+TGG - chr1.2:3713546-3713565 MS.gene044005:intron 30.0%
TTAAAGAGACTAAAATGGAC+TGG - chr1.2:3713057-3713076 MS.gene044005:CDS 30.0%
TTCAATCTATAAGGTCATCA+AGG + chr1.2:3713394-3713413 None:intergenic 30.0%
TTCAGATTCAAATTGCGAAT+CGG - chr1.2:3715418-3715437 MS.gene044005:intron 30.0%
TTGTTCAGGAATTGAAAAGT+GGG + chr1.2:3713010-3713029 None:intergenic 30.0%
TTTCAGAAATAATGCTGAAG+AGG - chr1.2:3715904-3715923 MS.gene044005:intron 30.0%
TTTGTTCAGGAATTGAAAAG+TGG + chr1.2:3713011-3713030 None:intergenic 30.0%
! ATGAATCCAAGATTTTCATG+AGG + chr1.2:3715245-3715264 None:intergenic 30.0%
! ATTGTGATTTAAAACCATGG+TGG - chr1.2:3713295-3713314 MS.gene044005:intron 30.0%
! GCAATTGTGATTTAAAACCA+TGG - chr1.2:3713292-3713311 MS.gene044005:intron 30.0%
! TATGCTACTAATTTTGTGCT+TGG - chr1.2:3713654-3713673 MS.gene044005:intron 30.0%
! TCCAAATTTCATTCTAAGGA+AGG + chr1.2:3713550-3713569 None:intergenic 30.0%
! TGTACTTCTGTATTTTGTTC+AGG + chr1.2:3713024-3713043 None:intergenic 30.0%
! TTAGTCCCGAAAATATTTTG+TGG - chr1.2:3712982-3713001 MS.gene044005:intron 30.0%
! TTTTGTGCTTGGAAATCTAT+TGG - chr1.2:3713665-3713684 MS.gene044005:intron 30.0%
!! AGTCCATTTTAGTCTCTTTA+AGG + chr1.2:3713058-3713077 None:intergenic 30.0%
!! CTTCAGCATTATTTCTGAAA+AGG + chr1.2:3715904-3715923 None:intergenic 30.0%
!!! ACTGATCTGTCTATTTTTGT+AGG - chr1.2:3714477-3714496 MS.gene044005:intron 30.0%
!!! TGTTTTGATATTGATGCACA+TGG - chr1.2:3713264-3713283 MS.gene044005:intron 30.0%
AAACCATGGTGGTTCTTTAT+TGG - chr1.2:3713306-3713325 MS.gene044005:intron 35.0%
AAGCTAGAGGATACATACTT+GGG + chr1.2:3716236-3716255 None:intergenic 35.0%
AATTGAAGGGATCTAATGCA+AGG + chr1.2:3715291-3715310 None:intergenic 35.0%
ACGAAAATTGATGGGAACTT+TGG - chr1.2:3714036-3714055 MS.gene044005:CDS 35.0%
ACTTGTACCTGTTTGCAAAT+TGG + chr1.2:3715797-3715816 None:intergenic 35.0%
AGGACAAAGTGCAAACAATT+TGG + chr1.2:3716074-3716093 None:intergenic 35.0%
AGGTAACTATTTGCCTAATC+TGG + chr1.2:3715225-3715244 None:intergenic 35.0%
ATGGAGAGAATAAGACTTTG+TGG - chr1.2:3712636-3712655 MS.gene044005:intron 35.0%
CAGCAGAACAAATCAATATG+AGG + chr1.2:3714865-3714884 None:intergenic 35.0%
CGAAAATTGATGGGAACTTT+GGG - chr1.2:3714037-3714056 MS.gene044005:CDS 35.0%
CTTATTGCGAATAACCTTGA+CGG + chr1.2:3714292-3714311 None:intergenic 35.0%
GAGAATAAGACTTTGTGGAT+TGG - chr1.2:3712641-3712660 MS.gene044005:intron 35.0%
GAGTTTGTGATAAATGAAGG+TGG - chr1.2:3713887-3713906 MS.gene044005:intron 35.0%
GTGACAGTCAAAACCTTAAT+AGG + chr1.2:3714243-3714262 None:intergenic 35.0%
GTTGTTTATGATGCCAATAC+TGG - chr1.2:3714577-3714596 MS.gene044005:intron 35.0%
TAAATGTTGCCCAGTTCAAA+CGG + chr1.2:3714428-3714447 None:intergenic 35.0%
TAAGCTAGAGGATACATACT+TGG + chr1.2:3716237-3716256 None:intergenic 35.0%
TATCCATCATAAATAGGGGA+TGG + chr1.2:3716183-3716202 None:intergenic 35.0%
TATTTAGGAGGTCAGTCAAA+TGG - chr1.2:3715522-3715541 MS.gene044005:intron 35.0%
TGTTAAGATACCTGTTGGTA+AGG - chr1.2:3715758-3715777 MS.gene044005:intron 35.0%
TTGTAGAATCTGCTTCAGAT+TGG + chr1.2:3715557-3715576 None:intergenic 35.0%
TTTCCATCCCCTATTTATGA+TGG - chr1.2:3716177-3716196 MS.gene044005:CDS 35.0%
TTTGACTGACCTCCTAAATA+AGG + chr1.2:3715522-3715541 None:intergenic 35.0%
! ATGTATCCTCTAGCTTATGT+CGG - chr1.2:3716240-3716259 MS.gene044005:CDS 35.0%
! GTCTGCTAGTTTCACTAAAT+AGG - chr1.2:3715093-3715112 MS.gene044005:intron 35.0%
! GTTAAGATACCTGTTGGTAA+GGG - chr1.2:3715759-3715778 MS.gene044005:intron 35.0%
! GTTTTGTCCAATTTGCAAAC+AGG - chr1.2:3715787-3715806 MS.gene044005:intron 35.0%
! GTTTTTATGCTTGTGAAGTG+TGG - chr1.2:3713186-3713205 MS.gene044005:intron 35.0%
! TATGTCGGTTACCCTATTTA+TGG - chr1.2:3716255-3716274 MS.gene044005:CDS 35.0%
! TGTCTGTTTCCTTATTTAGG+AGG - chr1.2:3715510-3715529 MS.gene044005:intron 35.0%
!! ATATTGATTTGTTCTGCTGC+AGG - chr1.2:3714866-3714885 MS.gene044005:intron 35.0%
!! CAAAGTCTTATTCTCTCCAT+TGG + chr1.2:3712636-3712655 None:intergenic 35.0%
!! CAGAACTACTCTGAAACAAT+CGG + chr1.2:3714106-3714125 None:intergenic 35.0%
!! TCCCCTATTTATGATGGATA+TGG - chr1.2:3716183-3716202 MS.gene044005:CDS 35.0%
!! TGGGTGCCACAAAATATTTT+CGG + chr1.2:3712991-3713010 None:intergenic 35.0%
AACATTTAGCACAGGAGACA+AGG - chr1.2:3714440-3714459 MS.gene044005:intron 40.0%
AAGCAGACATTCTCTCAGTA+TGG - chr1.2:3715723-3715742 MS.gene044005:intron 40.0%
AAGCTAAACGGGACAATGAT+TGG - chr1.2:3715935-3715954 MS.gene044005:intron 40.0%
ACATGTCGAGAATACTAGCT+AGG + chr1.2:3713513-3713532 None:intergenic 40.0%
ACATTTAGCACAGGAGACAA+GGG - chr1.2:3714441-3714460 MS.gene044005:intron 40.0%
ACCAACAGGTATCTTAACAG+AGG + chr1.2:3715757-3715776 None:intergenic 40.0%
ATCAAGCTTTCCGTTTGAAC+TGG - chr1.2:3714415-3714434 MS.gene044005:intron 40.0%
ATCTTTGGACGGAATGTTCA+AGG + chr1.2:3714822-3714841 None:intergenic 40.0%
ATTGACATGTGGCCTAATGA+TGG - chr1.2:3713982-3714001 MS.gene044005:CDS 40.0%
CAACCAATAAAGAACCACCA+TGG + chr1.2:3713312-3713331 None:intergenic 40.0%
CAGAATCATCAGAATCAGCA+TGG - chr1.2:3712608-3712627 MS.gene044005:intron 40.0%
CAGGCTATGACTCAAATGAA+CGG - chr1.2:3714652-3714671 MS.gene044005:intron 40.0%
CCTGTTTATATGCTGGATTG+CGG + chr1.2:3715988-3716007 None:intergenic 40.0%
CGAATCGGAAAGTCTATTTC+TGG - chr1.2:3715433-3715452 MS.gene044005:intron 40.0%
CTGTAAAACTTTCTCAGCTG+TGG + chr1.2:3714364-3714383 None:intergenic 40.0%
CTTGTGAAGTGTGGACAAAA+GGG - chr1.2:3713195-3713214 MS.gene044005:intron 40.0%
GAAATCATCTGCCATCAACA+AGG - chr1.2:3714723-3714742 MS.gene044005:intron 40.0%
GAGATTGCCTGTTTATATGC+TGG + chr1.2:3715995-3716014 None:intergenic 40.0%
GGACAAAAGGGTTTGGAAAA+TGG - chr1.2:3713207-3713226 MS.gene044005:intron 40.0%
GTTATGACAGAAGATGTTGC+TGG - chr1.2:3714188-3714207 MS.gene044005:CDS 40.0%
GTTATTCGCAATAAGCACAG+CGG - chr1.2:3714297-3714316 MS.gene044005:CDS 40.0%
TAACAGTTTAGGCTCGATGT+TGG - chr1.2:3716135-3716154 MS.gene044005:CDS 40.0%
TACATACTTGGGTCATGATG+AGG + chr1.2:3716225-3716244 None:intergenic 40.0%
TCAAGCTTTCCGTTTGAACT+GGG - chr1.2:3714416-3714435 MS.gene044005:intron 40.0%
TGATGATTCTGATGCTGATG+TGG + chr1.2:3712599-3712618 None:intergenic 40.0%
TGGTGATAAGGAACATATGG+CGG + chr1.2:3712539-3712558 None:intergenic 40.0%
TTCAGAGGGTTATGGATTTG+TGG - chr1.2:3714323-3714342 MS.gene044005:CDS 40.0%
! ACCATTTTGCCACCATCATT+AGG + chr1.2:3713997-3714016 None:intergenic 40.0%
! CAACTTGCAGCTTTAACAGA+AGG + chr1.2:3714561-3714580 None:intergenic 40.0%
! CAATTTGTTCCATTAGCGTC+TGG - chr1.2:3715183-3715202 MS.gene044005:intron 40.0%
! GATGCTTTTCGATCCAGATT+AGG - chr1.2:3715209-3715228 MS.gene044005:intron 40.0%
! GTTGTTGAAACTGATGGTGA+TGG + chr1.2:3712562-3712581 None:intergenic 40.0%
! TGGGAACTTTGGGAATTATG+TGG - chr1.2:3714047-3714066 MS.gene044005:CDS 40.0%
! TGGTGGTGATAAGGAACATA+TGG + chr1.2:3712542-3712561 None:intergenic 40.0%
! TTGATGGCAGATGATTTCCT+TGG + chr1.2:3714721-3714740 None:intergenic 40.0%
!! GGGTGCCACAAAATATTTTC+GGG + chr1.2:3712990-3713009 None:intergenic 40.0%
!! TAGATGGCTAGAAGCATCTT+TGG + chr1.2:3714837-3714856 None:intergenic 40.0%
AACTGGGCAACATTTAGCAC+AGG - chr1.2:3714432-3714451 MS.gene044005:intron 45.0%
AAGCACAGCGGTATTTCAGA+GGG - chr1.2:3714309-3714328 MS.gene044005:CDS 45.0%
ACGGTGTTTACTGTTCTAGC+AGG - chr1.2:3714671-3714690 MS.gene044005:intron 45.0%
AGAATCTGCTTCAGATTGGC+TGG + chr1.2:3715553-3715572 None:intergenic 45.0%
AGATGAAAGCGAGAGATCTC+AGG - chr1.2:3714633-3714652 MS.gene044005:intron 45.0%
AGCAAACTGTTCGTCTCTCT+TGG - chr1.2:3715960-3715979 MS.gene044005:CDS 45.0%
AGCGGTATTTCAGAGGGTTA+TGG - chr1.2:3714315-3714334 MS.gene044005:CDS 45.0%
AGGCTTTGCAGAAGCTAAAC+GGG - chr1.2:3715924-3715943 MS.gene044005:intron 45.0%
AGGGGATGGAAAATATGGAC+CGG + chr1.2:3716169-3716188 None:intergenic 45.0%
AGGTTGCTCAAATGTCATCG+TGG + chr1.2:3715884-3715903 None:intergenic 45.0%
ATTGCGAATAACCTTGACGG+AGG + chr1.2:3714289-3714308 None:intergenic 45.0%
CAAACTGTTCGTCTCTCTTG+GGG - chr1.2:3715962-3715981 MS.gene044005:CDS 45.0%
CAGAATCAGCATGGATCCAA+TGG - chr1.2:3712617-3712636 MS.gene044005:intron 45.0%
CATCTGCCATCAACAAGGTA+TGG - chr1.2:3714728-3714747 MS.gene044005:intron 45.0%
CCGCAATCCAGCATATAAAC+AGG - chr1.2:3715985-3716004 MS.gene044005:CDS 45.0%
CGAATCCATAGCCCTTTGAA+CGG + chr1.2:3714603-3714622 None:intergenic 45.0%
CGGAAAGCTTGATCAGCATT+TGG + chr1.2:3714408-3714427 None:intergenic 45.0%
GAAGTGTGGACAAAAGGGTT+TGG - chr1.2:3713200-3713219 MS.gene044005:intron 45.0%
GAGGCTTTGCAGAAGCTAAA+CGG - chr1.2:3715923-3715942 MS.gene044005:intron 45.0%
GATCTAATGCAAGGCACGTT+GGG + chr1.2:3715282-3715301 None:intergenic 45.0%
GCAAACTGTTCGTCTCTCTT+GGG - chr1.2:3715961-3715980 MS.gene044005:CDS 45.0%
GCAACGGTTGTTGAAACTGA+TGG + chr1.2:3712568-3712587 None:intergenic 45.0%
GCCTCTGTTAAGATACCTGT+TGG - chr1.2:3715753-3715772 MS.gene044005:intron 45.0%
GCTTGTGAAGTGTGGACAAA+AGG - chr1.2:3713194-3713213 MS.gene044005:intron 45.0%
GGAGAGACACATCAAATCAG+AGG - chr1.2:3713686-3713705 MS.gene044005:intron 45.0%
GTCGGTTACCCTATTTATGG+AGG - chr1.2:3716258-3716277 MS.gene044005:CDS 45.0%
GTGAGTGGCCTCCATAAATA+GGG + chr1.2:3716269-3716288 None:intergenic 45.0%
TAAGCACAGCGGTATTTCAG+AGG - chr1.2:3714308-3714327 MS.gene044005:CDS 45.0%
TGATAAGGAACATATGGCGG+CGG + chr1.2:3712536-3712555 None:intergenic 45.0%
TGATTCTGATGCTGATGTGG+CGG + chr1.2:3712596-3712615 None:intergenic 45.0%
TGCTCAAATGTCATCGTGGT+GGG + chr1.2:3715880-3715899 None:intergenic 45.0%
TGTGAGTGGCCTCCATAAAT+AGG + chr1.2:3716270-3716289 None:intergenic 45.0%
TTGCTCAAATGTCATCGTGG+TGG + chr1.2:3715881-3715900 None:intergenic 45.0%
TTTGCAGATTACCTCCGTCA+AGG - chr1.2:3714275-3714294 MS.gene044005:CDS 45.0%
! CGTTGATGAATCTGAACCGT+TGG + chr1.2:3712375-3712394 None:intergenic 45.0%
! CTAGGTTGAGTGTACTAGCT+AGG + chr1.2:3713495-3713514 None:intergenic 45.0%
! CTGTTTTGCTTCTACTGGAG+AGG - chr1.2:3712703-3712722 MS.gene044005:CDS 45.0%
! GATTGGCCATACCTTGTTGA+TGG + chr1.2:3714737-3714756 None:intergenic 45.0%
! GGATTGGTGATTTGCATAGC+TGG - chr1.2:3712657-3712676 MS.gene044005:intron 45.0%
! TGGTGATTTGCATAGCTGGA+TGG - chr1.2:3712661-3712680 MS.gene044005:CDS 45.0%
! TTGTTGCTTGTTCGTCGTCT+CGG + chr1.2:3712402-3712421 None:intergenic 45.0%
!! CATCGCTGTTTTGCTTCTAC+TGG - chr1.2:3712698-3712717 MS.gene044005:CDS 45.0%
!! GCCTAATGATGGTGGCAAAA+TGG - chr1.2:3713993-3714012 MS.gene044005:CDS 45.0%
!! GTTGAAACTGATGGTGATGG+TGG + chr1.2:3712559-3712578 None:intergenic 45.0%
!! TGATGGTGATGGTGGTGATA+AGG + chr1.2:3712551-3712570 None:intergenic 45.0%
!! TGGCTAGAAGCATCTTTGGA+CGG + chr1.2:3714833-3714852 None:intergenic 45.0%
!!! AAAACAAAATTATAAATTTT+AGG + chr1.2:3713148-3713167 None:intergenic 5.0%
AAACCACAGCCCTTACCAAC+AGG + chr1.2:3715771-3715790 None:intergenic 50.0%
AGCATCATGCCAGACGCTAA+TGG + chr1.2:3715195-3715214 None:intergenic 50.0%
AGTTGCAGCACCAATACGCA+TGG + chr1.2:3714698-3714717 None:intergenic 50.0%
CAAAGGGCTATGGATTCGTC+AGG - chr1.2:3714605-3714624 MS.gene044005:intron 50.0%
CTTGGGTCATGATGAGGAGA+AGG + chr1.2:3716219-3716238 None:intergenic 50.0%
GACATGTGGCCTAATGATGG+TGG - chr1.2:3713985-3714004 MS.gene044005:CDS 50.0%
GCAACAACGACAACAACCAC+CGG - chr1.2:3712415-3712434 MS.gene044005:CDS 50.0%
GCCAATACTGGCCGTTCAAA+GGG - chr1.2:3714589-3714608 MS.gene044005:intron 50.0%
GGATCTAATGCAAGGCACGT+TGG + chr1.2:3715283-3715302 None:intergenic 50.0%
GGCTATGGATTCGTCAGGTT+CGG - chr1.2:3714610-3714629 MS.gene044005:intron 50.0%
GGGTAACCGACATAAGCTAG+AGG + chr1.2:3716249-3716268 None:intergenic 50.0%
GTTGCAGCACCAATACGCAT+GGG + chr1.2:3714697-3714716 None:intergenic 50.0%
TAGCACAGGAGACAAGGGAT+CGG - chr1.2:3714446-3714465 MS.gene044005:intron 50.0%
TAGGCTCGATGTTGGAAGCT+GGG - chr1.2:3716143-3716162 MS.gene044005:CDS 50.0%
TCCGATGCAGTATCCAACAG+CGG - chr1.2:3712466-3712485 MS.gene044005:CDS 50.0%
TGAGGTGGCATCATGTGATG+TGG + chr1.2:3712503-3712522 None:intergenic 50.0%
TGCATCGGAATCCACTGTTG+TGG + chr1.2:3712455-3712474 None:intergenic 50.0%
TGCCAATACTGGCCGTTCAA+AGG - chr1.2:3714588-3714607 MS.gene044005:intron 50.0%
TTAGGCTCGATGTTGGAAGC+TGG - chr1.2:3716142-3716161 MS.gene044005:CDS 50.0%
! ATACCTGTTGGTAAGGGCTG+TGG - chr1.2:3715765-3715784 MS.gene044005:intron 50.0%
!! GTATTGGTGCTGCAACTCCA+AGG - chr1.2:3714701-3714720 MS.gene044005:intron 50.0%
ACTGGCCGTTCAAAGGGCTA+TGG - chr1.2:3714595-3714614 MS.gene044005:intron 55.0%
GCCCTTTGAACGGCCAGTAT+TGG + chr1.2:3714593-3714612 None:intergenic 55.0%
GCCGCTGTTGGATACTGCAT+CGG + chr1.2:3712470-3712489 None:intergenic 55.0%
TCTAGCAGGCCCATGCGTAT+TGG - chr1.2:3714685-3714704 MS.gene044005:intron 55.0%
TGCTTGTTCGTCGTCTCGGA+CGG + chr1.2:3712398-3712417 None:intergenic 55.0%
ACGACAACAACCACCGGCAC+CGG - chr1.2:3712421-3712440 MS.gene044005:CDS 60.0%
CACTGTTGTGGTACCGCCAC+CGG + chr1.2:3712443-3712462 None:intergenic 60.0%
CTCGATGTTGGAAGCTGGGC+CGG - chr1.2:3716147-3716166 MS.gene044005:CDS 60.0%
GCAGTATCCAACAGCGGCGA+TGG - chr1.2:3712472-3712491 MS.gene044005:CDS 60.0%
GGCATTACCATCGCCGCTGT+TGG + chr1.2:3712482-3712501 None:intergenic 60.0%
TGATGTGGCGGCACGTGCAA+CGG + chr1.2:3712584-3712603 None:intergenic 60.0%
GGCGGCGCGTAATGTTGAGG+TGG + chr1.2:3712518-3712537 None:intergenic 65.0%
! ACAACAACCACCGGCACCGG+TGG - chr1.2:3712424-3712443 MS.gene044005:CDS 65.0%
! CGGTGGCGGTACCACAACAG+TGG - chr1.2:3712441-3712460 MS.gene044005:CDS 65.0%
GGCGGCGGCGCGTAATGTTG+AGG + chr1.2:3712521-3712540 None:intergenic 70.0%
TGTGGTACCGCCACCGGTGC+CGG + chr1.2:3712437-3712456 None:intergenic 70.0%
!! ACAACCACCGGCACCGGTGG+CGG - chr1.2:3712427-3712446 MS.gene044005:CDS 70.0%
!! GGTACCGCCACCGGTGCCGG+TGG + chr1.2:3712434-3712453 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 3712362 3716302 3712362 ID=MS.gene044005
chr1.2 mRNA 3712362 3716302 3712362 ID=MS.gene044005.t1;Parent=MS.gene044005
chr1.2 exon 3715940 3716302 3715940 ID=MS.gene044005.t1.exon1;Parent=MS.gene044005.t1
chr1.2 CDS 3715940 3716302 3715940 ID=cds.MS.gene044005.t1;Parent=MS.gene044005.t1
chr1.2 exon 3714137 3714382 3714137 ID=MS.gene044005.t1.exon2;Parent=MS.gene044005.t1
chr1.2 CDS 3714137 3714382 3714137 ID=cds.MS.gene044005.t1;Parent=MS.gene044005.t1
chr1.2 exon 3713920 3714093 3713920 ID=MS.gene044005.t1.exon3;Parent=MS.gene044005.t1
chr1.2 CDS 3713920 3714093 3713920 ID=cds.MS.gene044005.t1;Parent=MS.gene044005.t1
chr1.2 exon 3713052 3713127 3713052 ID=MS.gene044005.t1.exon4;Parent=MS.gene044005.t1
chr1.2 CDS 3713052 3713127 3713052 ID=cds.MS.gene044005.t1;Parent=MS.gene044005.t1
chr1.2 exon 3712856 3712985 3712856 ID=MS.gene044005.t1.exon5;Parent=MS.gene044005.t1
chr1.2 CDS 3712856 3712985 3712856 ID=cds.MS.gene044005.t1;Parent=MS.gene044005.t1
chr1.2 exon 3712658 3712754 3712658 ID=MS.gene044005.t1.exon6;Parent=MS.gene044005.t1
chr1.2 CDS 3712658 3712754 3712658 ID=cds.MS.gene044005.t1;Parent=MS.gene044005.t1
chr1.2 exon 3712362 3712523 3712362 ID=MS.gene044005.t1.exon7;Parent=MS.gene044005.t1
chr1.2 CDS 3712362 3712523 3712362 ID=cds.MS.gene044005.t1;Parent=MS.gene044005.t1
Gene Sequence

>MS.gene044005

ATGCAACAAACCAACGGTTCAGATTCATCAACGCCGTCCGAGACGACGAACAAGCAACAACGACAACAACCACCGGCACCGGTGGCGGTACCACAACAGTGGATTCCGATGCAGTATCCAACAGCGGCGATGGTAATGCCACATCACATGATGCCACCTCAACATTACGCGCCGCCGCCATATGTTCCTTATCACCACCATCACCATCAGTTTCAACAACCGTTGCACGTGCCGCCACATCAGCATCAGAATCATCAGAATCAGCATGGATCCAATGGAGAGAATAAGACTTTGTGGATTGGTGATTTGCATAGCTGGATGGATGAGAGTTATCTTCATCGCTGTTTTGCTTCTACTGGAGAGGTTGTTTTTTTCCAAACATGTTTGGTTATTGTTTTTTGAAACATGTTTGTGTTTATGTGTTACATTGTATGTTAATTGTTTGCATGCTTGAATTTGTTATGTTCTAGATTTATGTTTGTTTAAGATAAATTATTATAAATTTGTGTTTATGAAAAAGCTGAATAAGAGTTTTTTAAAAATTGAGATTTAAAAACTTATGCTAAAAAGCTAGTATTGTTAAAAATTTGTCATTGGAAATTTATAGGTTAAATATGGTTTTAGTCCCGAAAATATTTTGTGGCACCCACTTTTCAATTCCTGAACAAAATACAGAAGTACATGTTTTTAGTTCCTTAAAGAGACTAAAATGGACTGGAAAAGTGAGTATAGAGACTAAAAACATAATTTGAAATATTTATAAGCATTGAAAACTTATTTAATCCTAAAATTTATAATTTTGTTTTTGTAAGTGATTTATCTTAGTTTTTATGCTTGTGAAGTGTGGACAAAAGGGTTTGGAAAATGGTTTGCAATAATAAATGTGGTTTTATAACGTCAAATGTTTTGATATTGATGCACATGGTAACTGCAATTGTGATTTAAAACCATGGTGGTTCTTTATTGGTTGAAAATTTATACATATCTCAAATTTTGAGAATTAATATAAATTGTGATTGCAATTTAAAACCTTGATGACCTTATAGATTGAAAAATTATATAACTCAAATTTTGAGATTTGATGTAAATTATATTCATTATACATAGTATTTTATGTGAAAATAGATTTTCCTAGCTAGTACACTCAACCTAGCTAGTATTCTCGACATGTATTTGAAAAAATTTCCTTCCTTAGAATGAAATTTGGAAGGACCACATTTGAAGTTGAAAATAAATTCATAAATCTTTGTGAATTGAAGAATGGAAAGTGAATGTGCATGACACATTTAACCTATGCTACTAATTTTGTGCTTGGAAATCTATTGGAGAGACACATCAAATCAGAGGCACTCTCTTTCCAACATATTTCCAAACATGCATTAAATTGTGATAAATGAAGTTGAAAATACTTGGAACTTTTCAAGCCAAAATGAATGTGTTTTGTGTTTCTTTAATGTTATAGCCTGGAATAAAATGTTATACTTCAATGAAGTATGCTACACTCAGCTATGTTCTACTCTATCTTGAGTTTGTGATAAATGAAGGTGGCAATAGAAGAATATCAAAGCCTACTAGAAGTCTATATTTTACTTCTTTGGTTTTATTATCCAACTTTTATGTATTGACATGTGGCCTAATGATGGTGGCAAAATGGTACCATTTGATGTATGTTAAACGAAAATTGATGGGAACTTTGGGAATTATGTGGTTGTATGTTCATTTCTGAACTCTTTAAAGATATCCGATTGTTTCAGAGTAGTTCTGCTTCTCTTCTATTCTAATTTGACGAAAATAAACTTGTATTTTGATAACTTAATTTGTTGTGAGTTATGACAGAAGATGTTGCTGGTGCTTCACATATTGTTTTTGATATAGAATCCTATTAAGGTTTTGACTGTCACTCATTTTTTATTTTTGCAGATTACCTCCGTCAAGGTTATTCGCAATAAGCACAGCGGTATTTCAGAGGGTTATGGATTTGTGGAGTTCTTTTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAATTTTGATGCCAAATGCTGATCAAGCTTTCCGTTTGAACTGGGCAACATTTAGCACAGGAGACAAGGGATCGGATAATGTCACTGATCTGTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGTGTGTTGCATGAAACTTTTTCTAGTTCATATCCTTCTGTTAAAGCTGCAAGTTGTTTATGATGCCAATACTGGCCGTTCAAAGGGCTATGGATTCGTCAGGTTCGGAGATGAAAGCGAGAGATCTCAGGCTATGACTCAAATGAACGGTGTTTACTGTTCTAGCAGGCCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGCCATCAACAAGGTATGGCCAATCACATTATTTGCTTTTGTTAAATGAAATTTTATTCTTTCATTTGGGAAAGGAAAAAAATAGTGCCTTGAACATTCCGTCCAAAGATGCTTCTAGCCATCTATATTACCTCATATTGATTTGTTCTGCTGCAGGTTGTTACAGAAGAACTATGATCTGAACTACATTACTGTATTTGTATAGCAGTAACTATAGTCTTCTGTTTAGATTTGGATTTCATTCCTGAATGATATTCTTATGTCTTTCTAAATGAATAGATTTTTTAAAATGACAATTATCACGTCTTTTTCATAGAAAAAATTGATATATCATTTACTGAATGCAAATGAAATTGAATCTGTCTGCTAGTTTCACTAAATAGGAGTGAGATAGTTGAAAAAACAATCTAGTTTATTATTTCTTCTGATTATGTAATGAATGCTCAAATGTCAATTTGTTCCATTAGCGTCTGGCATGATGCTTTTCGATCCAGATTAGGCAAATAGTTACCTCATGAAAATCTTGGATTCATTTTATTGTTTATTTCCCAACGTGCCTTGCATTAGATCCCTTCAATTTGTCTTTGACAAAACATGTCTCAGTTTTTTTTTTTTTATTGCATGCTACTAAAAGATTTTGAAGCATTTGTACCATCTGTATTTTGATTTTGTCCAAAGTTATAGAATTCAGATTCAAATTGCGAATCGGAAAGTCTATTTCTGGAATTGTGAATTGATCTGATTATGAATCATATAATATACATGAATATATTTTTTTTGTCTGTTTCCTTATTTAGGAGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACAGTGAGCTTTTTCGTTCTTATATTATTAAGTTTTGCATTTTAGAAACTTATCATTTGTTACCAATTTTAAATAGCTAATCAATGATTCATTATAGATATTGTTGGAGGACTCGACTCTAATGTTACAGATGAAGATCTTAAGCAGACATTCTCTCAGTATGGTGAGATAGCCTCTGTTAAGATACCTGTTGGTAAGGGCTGTGGTTTTGTCCAATTTGCAAACAGGTACAAGTTCTCGACTGTCTCAAATCTTTCATTGATATGCTTTTTAATCTCTTCTTTTAATGCAATCACCCACCACGATGACATTTGAGCAACCTTTTCAGAAATAATGCTGAAGAGGCTTTGCAGAAGCTAAACGGGACAATGATTGGTAAGCAAACTGTTCGTCTCTCTTGGGGCCGCAATCCAGCATATAAACAGGCAATCTCTCTTTCTCTCTATTTTTCATATCATCTCCTCATAATTTTTTTTGAAGTCTAGAGTACCAAATTGTTTGCACTTTGTCCTGTCATGAAATTGAATTTGTGCTGATTTTATCTTAATAATGATAACAGTTTAGGCTCGATGTTGGAAGCTGGGCCGGTCCATATTTTCCATCCCCTATTTATGATGGATATGGATATGCAATGCCTTCTCCTCATCATGACCCAAGTATGTATCCTCTAGCTTATGTCGGTTACCCTATTTATGGAGGCCACTCACAACAAGTAAGCTGA
Protein sequence

>MS.gene044005.t1

MQQTNGSDSSTPSETTNKQQRQQPPAPVAVPQQWIPMQYPTAAMVMPHHMMPPQHYAPPPYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFVEFFSHATAEKVLQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSLQVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSAINKSNGTSSQSEADSTNTTVSFFVLILLNIVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRLDVGSWAGPYFPSPIYDGYGYAMPSPHHDPSMYPLAYVGYPIYGGHSQQVS