AlfalfaGEDB | MS.gene013003

M. sativa cultivar XinJiangDaYe / MS.gene013003

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013003.t1	XP_003603009.1	93.1	331	1	1	89	397	89	419	4.60E-173	617.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013003.t1	Q9SX80	71.5	305	81	4	97	397	131	433	1.6e-118	427.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013003.t1	G7J6A3	93.1	331	1	1	89	397	89	419	3.3e-173	617.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene005885	MS.gene013003	PPI
MS.gene013003	MS.gene68626	PPI
MS.gene013003	MS.gene99045	PPI
MS.gene013003	MS.gene73119	PPI
MS.gene013003	MS.gene26784	PPI
MS.gene013003	MS.gene005884	PPI
MS.gene013003	MS.gene45785	PPI
MS.gene013003	MS.gene031018	PPI
MS.gene013003	MS.gene44474	PPI
MS.gene013003	MS.gene45537	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013003.t1	MTR_3g101370	93.795	419	4	1	1	397	1	419	0.0	809
MS.gene013003.t1	MTR_3g101370	90.816	294	5	1	1	272	1	294	0.0	548
MS.gene013003.t1	MTR_1g020080	66.513	433	100	9	1	397	1	424	0.0	529
MS.gene013003.t1	MTR_4g086600	59.736	303	92	6	68	351	124	415	2.91e-118	357
MS.gene013003.t1	MTR_1g020080	61.489	309	80	5	1	277	1	302	1.21e-115	345
MS.gene013003.t1	MTR_4g131970	51.977	354	152	9	41	388	52	393	4.73e-106	324
MS.gene013003.t1	MTR_2g022950	55.921	304	128	3	97	394	86	389	5.74e-102	313
MS.gene013003.t1	MTR_2g097960	52.475	303	116	5	97	372	41	342	4.11e-97	301
MS.gene013003.t1	MTR_2g022950	62.420	157	58	1	97	252	86	242	5.15e-61	202
MS.gene013003.t1	MTR_2g022950	62.420	157	58	1	97	252	86	242	3.36e-60	201

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013003.t1	AT1G47490	61.250	400	114	11	30	397	41	431	1.37e-159	461
MS.gene013003.t1	AT1G47500	61.619	383	116	6	44	397	53	433	2.89e-152	443
MS.gene013003.t1	AT3G19130	52.078	409	144	6	1	358	1	408	1.97e-129	385
MS.gene013003.t1	AT1G49600	59.574	329	96	6	86	383	112	434	1.23e-128	383
MS.gene013003.t1	AT1G49600	61.074	298	84	3	86	352	112	408	7.68e-123	368
MS.gene013003.t1	AT1G49600	61.074	298	84	3	86	352	112	408	7.68e-123	368
MS.gene013003.t1	AT1G11650	48.663	374	139	9	44	376	2	363	2.88e-101	311
MS.gene013003.t1	AT5G54900	51.724	319	117	6	88	377	55	365	4.32e-95	295
MS.gene013003.t1	AT4G27000	57.028	249	106	1	99	347	108	355	5.71e-92	288
MS.gene013003.t1	AT1G47490	54.909	275	87	8	30	274	41	308	6.52e-90	279

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Find 181 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTTGAATGAAATGAA+TGG	0.607445	3.2:-84408046	MS.gene013003:CDS
AAATCCTCTGGCTATCAACA+AGG	0.639178	3.2:-84407974	MS.gene013003:intron
AACAACAAAGTGAGAAAAGG+CGG	0.636747	3.2:+84405059	None:intergenic
AACAGAGGGGTATGGATTTG+TGG	0.467857	3.2:-84408380	MS.gene013003:CDS
AACGGCGGAGGGAGAAGCGG+CGG	0.584552	3.2:+84405120	None:intergenic
AACTGGGCGACATTTAGCAC+AGG	0.599909	3.2:-84408271	MS.gene013003:CDS
AAGCAGACTTGTCAAACAGA+GGG	0.590205	3.2:-84408394	MS.gene013003:CDS
AAGCAGCAGCATACATGCTC+TGG	0.510563	3.2:+84406517	None:intergenic
AAGCCCGAACCGCTTCGGTC+GGG	0.502778	3.2:-84405398	MS.gene013003:CDS
AAGCTAAATGGTACAACAGT+TGG	0.520807	3.2:-84407095	MS.gene013003:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGATCGAATAAGTTACA+AGG	+	chr3.2:84408304-84408323	None:intergenic	30.0%
AAGGTCTCTATTGATCTATA+GGG	-	chr3.2:84407718-84407737	MS.gene013003:intron	30.0%
AATAGAATCCAAGTCACATT+TGG	-	chr3.2:84408685-84408704	MS.gene013003:intron	30.0%
AATCATTTGTTTAGACTCGT+AGG	-	chr3.2:84408406-84408425	MS.gene013003:CDS	30.0%
AATGATGATAAGCCATGTAA+TGG	+	chr3.2:84405231-84405250	None:intergenic	30.0%
ACAGATCGAATAAGTTACAA+GGG	+	chr3.2:84408303-84408322	None:intergenic	30.0%
AGACTAAACGAAAACAAACT+AGG	+	chr3.2:84408969-84408988	None:intergenic	30.0%
AGAGTGAAATTTCAGATATG+AGG	+	chr3.2:84406759-84406778	None:intergenic	30.0%
AGGAGAAATAAACAAGTGAA+TGG	+	chr3.2:84407030-84407049	None:intergenic	30.0%
ATAAGAAATGTGAAGAGACA+AGG	+	chr3.2:84408514-84408533	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	84405025	84409685	84405025	ID=MS.gene013003
chr3.2	mRNA	84405025	84409685	84405025	ID=MS.gene013003.t1;Parent=MS.gene013003
chr3.2	exon	84409398	84409685	84409398	ID=MS.gene013003.t1.exon1;Parent=MS.gene013003.t1
chr3.2	CDS	84409398	84409685	84409398	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1
chr3.2	exon	84407975	84408443	84407975	ID=MS.gene013003.t1.exon2;Parent=MS.gene013003.t1
chr3.2	CDS	84407975	84408443	84407975	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1
chr3.2	exon	84407460	84407515	84407460	ID=MS.gene013003.t1.exon3;Parent=MS.gene013003.t1
chr3.2	CDS	84407460	84407515	84407460	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1
chr3.2	exon	84407253	84407383	84407253	ID=MS.gene013003.t1.exon4;Parent=MS.gene013003.t1
chr3.2	CDS	84407253	84407383	84407253	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1
chr3.2	exon	84407046	84407142	84407046	ID=MS.gene013003.t1.exon5;Parent=MS.gene013003.t1
chr3.2	CDS	84407046	84407142	84407046	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1
chr3.2	exon	84406488	84406634	84406488	ID=MS.gene013003.t1.exon6;Parent=MS.gene013003.t1
chr3.2	CDS	84406488	84406634	84406488	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1
chr3.2	exon	84405991	84406103	84405991	ID=MS.gene013003.t1.exon7;Parent=MS.gene013003.t1
chr3.2	CDS	84405991	84406103	84405991	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1
chr3.2	exon	84405285	84405466	84405285	ID=MS.gene013003.t1.exon8;Parent=MS.gene013003.t1
chr3.2	CDS	84405285	84405466	84405285	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1
chr3.2	exon	84405025	84405161	84405025	ID=MS.gene013003.t1.exon9;Parent=MS.gene013003.t1
chr3.2	CDS	84405025	84405161	84405025	ID=cds.MS.gene013003.t1;Parent=MS.gene013003.t1

Gene Sequence

>MS.gene013003

ATGCAATCAACAAACGGTTCTGATTCGAAACCAACGGAGCAGAGTAATAACAACAGGCCGCAACAGAAAACTCCGCCACCACCTTCACCGCATTCACTTACAGTTCCACCACCGCACCAGTGGGTTCCGATGCAATATCCACCGGCGGCAATGGTAATGCCGCATCATATGTTACCGCCTCAACATTATCCGCCGCCACCACACCATTACATGGCTTATCATCATTATCTTCACCACGTGCCTCACGTGCATCATGGATCTAGTGCTGCTGATAATAAAACTCTCTGGGTCGGTGATTTGCACCATTGGATGGATGAAAATTATCTCCACCGTTGTTTCGCTTCCACCGGCGAGGTTTTCCCTTTTCCCTTTTTCTTTCTTTCTTTTTGTTTTTTCGTTAGTGATTTTATTTATGAACATTAAATCGTATTTTTATGTTTTGTTACTTTTATGTTTTCTGATATCAATGTTATTTGATTGTAAGTTTATGGAAAATGGATATTACAGTTTGTCGTTTCTACTTAAGATTCGGTTATGCTTCATTTGGGTTTCGTGTTTTTGGGTTTTTTTGTTATTTAAGTAAATTTTTTGGGTTTTGTGTTAACCCTCAGAAAAAAGGGAACTTTTTTTTTTTTTACTAATTGTGTATGTAGTTATAGTACAATTGTTAAATCAAGTTTAAAGATTAGTAATTGAAAAGATATTAAAGCCATGTGCATTAATAGTTTTTTGGATTAAAGAGAAGATCGAAATGTTTGCACTTCTGACATGGGTTTAAGGTTCAGTTGTTGCAGGTGGCTAGATTTAACCCAAAAAGTGACATTATTGCAATCTTTTTATGCCACATTTGTTTGGTGAAAAAATAGTACTATGAATTTTGAAAGCTTAGTGGGGTGTATTGGAATGGGATTTTAAAGCATTTTAAAAGAGTTTTTTAAGCATGTATTTGAAACTGGGTTTGCAAACCATTTCTCCGCTTCCCGAGACATTAAGCTTCTGCGTTGACGTATTAACCGATTTCTTATGGTGATTTCTCAAAATATGCCGCTGTTCCAAACACATGCTTATGATAGAAAATTACCGTGATATTCAATCGAGATTATTATTTAATCCAAATAAATGTTGTGGTATTTATTTAGGAGAATTGAGTTTTCTCATTTTGGTAGTAAAAATGGTTGTTGAGATTCTCATTTGGTTCGAGATGGATAAACTTTTGCATCTAATTGACATGCATTTTTGCAGATTTTCTCCATTAAGGTTATTCGCAATAAGCAGACTTGTCAAACAGAGGGGTATGGATTTGTGGAATTCACTTCACATGGGACAGCTGAGAAAGTTTTGCAGACTTATGCTGGGATGTTGATGCCTAACACAGAGCAACCTTTTCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATACCATGTTACTTGAAACTTTTTCTGATAAATACCCTTCAGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGACGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATGGTGAAAGGTCTAAAGCTTTGAATGAAATGAATGGTGTTTTCTGTTCTAGCAGGGCAATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGTATGGCAACTTATATAGCGCCTCATATCTGAAATTTCACTCTTCATGTAGTAGAAAAGAAATGTGGTATACATTCAATTCGGAGACAAACAATTTTAGATATTTTTTTATGCTCAAATTGTATTTGTTCTGCTTTGTATTTTTGTCGAGAAACTTATGGAATTGCATTTTTATTGCTCATATAAATGTATGCTTTGTTTTATGGTATAATTGGCGATATCAATTTTGTTAATAAAATGTTATTTGTTTCTAATTAGCAGACAAGTAGTAAATTCATAGAATTTCCTGAATCCATTCACTTGTTTATTTCTCCTCGTTTCAGTTTTCAATCTCGTGTAGTTATTTTTTTTAATGTCTCTCCATTTTAACATTTGCATATGCTTTTCACCTGAAAACTGCATGGAAAGTCTGGAACATCTCTAGTAGTTGGGTATTGATTTAATTTGTTTCTTTATACAGGAGGCCAATCAAACGGCACACCCAGCCAATCTGATGCTGATTCTACAAATACAACTGTTAGTTTTTCAGCTTTTTATTAATTTTTTTTTAGAGAAGTTAATCTGTCACTAATTTTGTAAGGATGCATTATAGATATTTGTTGGAGGCCTTGACCCTAGTGCTACCGCTGAAGATCTTAGACAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGGTAAAATTTATATCCAATTTTTACTCTATGCATTTATTATGAGATAACAAGGTTTTTACTACACTCGCAATGTGTTCACTAATTAATCATTCTAAACAACCTATCTGCAGAAATAATGCTGAAGAAGCATTGCAGAAGCTAAATGGTACAACAGTTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGGTAATTGTTCTCTACCTCATACTTAGGCCCATACATTTGTGTGGCCATCCTACAAGGTCTCTATTGATCTATAGGGGCAAGTGTAATTTAATGACCAATAACTCACCTAGTAATACCATGAACTTCATGTAGGTTTTAGGAGAAACAAAAGGTCTATTTGTTCTCAGCTGCTAAATTTAATGAAGTGTAGTTTAATGCAGTCATTATATGATTTTTTTTGCTTAATTCGAATCAATCAAATTTTGTTCATGATTATTTTGTTCATTAATGAATTTTCACATTCAAATGAAGACTCTAAGAATAACTATTGATGAGTATAGCTCATTGAATACCAGATTGTCTCATTCTGTCTATCATTGATTGCATTTTGCAATTGTTCTATGTCAATTGACACATCTCTTTGCCTAGCAGTTTAGATCTGAATTCGGCAGTCCCTGGAATGGGCCAGCATATTATGGGGGACCTGCTTATGATGGTTATGGATATGCTATGCCGCATCCTTATGACCAGAGCATGTATGCTGCTGCTTACCCCATGTATGGAGGACACCAACAGCAAGTAAGCTAAATGAAAGTGCACTGCAGAAGTAATACTCACAACAGCATCATGTTTGAATGAGAAAAATTAACTTTTCTCCCTTGTAACTTATTCGATCTGTTGGTTGTATTCTGAAGAATCCCTCCTAATTGTGGAGTGGAGTTGAATTTTGATAACCTAAGGTAGCACGGTAGGAGTTCAATTAATCATTTGTTTAGACTCGTAGGAGTAATGAGGAACTGAAACTTGTTGATTGGAATAATTACCTTTAAGTATGCCTGCACTAGCTATTGCCTGCCATTGAGCTTTCCTTGTCTCTTCACATTTCTTATATGCCGATATTTTAATTTTGATTTTGATTTCAATCTAAAAAATTTAGATTTGTGGAGGCACACCCCATCCAAGGTCATTGAGAACCACCGATTTTATCGAGGAGTTACAATAGAATTTATATATAATAACCTACCAATTGCAGAATTCCAGAATAGAATCCAAGTCACATTTGGTCTGAATGGAAGGTCTAACCAATAACCATATGTGACAGCCATAATTTGTGATGATATTTTAATTGCATGCAATCCAAAGGTTGTTCTCCTTCCTCTACTTTGTTTATGCTTGAAGCCTCATTCACTTTGATGATCTACATGATCTTTAAAATTGTGATATTTCCTCTGGTGCATTCATGGTCAAACTAATATAATTTGATTTTGGCCAAAATTGGTTGATGAGGAAACCTTCTGGCCTGAGTAGCGCAATGAAATAACCCTAGTTTGTTTTCGTTTAGTCTGTAATTGACTTCTTACTACGTAATATACTACTCCCTCCGGTCCTATTTATAAGAGAAAGTTGACTTTTTAGATACATTGAATAATGTATGTATCTAGTAAAGAACCGAAACCAAATACATAAATTATTTAATGTATCTAAAAAGGAAATTGTCTCTTGTAAATAGGACCAGAGGGAGTATAATATAAGGATTTTGAACCCCCCTTTATTTTACAAAGCAACTTTGTACTAAATTAAACGATTGCCTTGCTCTTAGGGCTGGACAAGAAACAGCCAACCCGGCCCAAACTGCCCAACCCGCTAAGCCCGAACCGCTTCGGTCGGGTTATCCGGTTAAAGCGGGTCCAACGGTTTCAAAAGAATGGTTTGGGCTGGTTAAGGAAGGGTCGGTTCGGTTTGAGTTTAGTGGGCCATCGGAACCCAATACCGACCGACCCAGTATATACCACTTATATTTATTATTATATATAAATAAATCAAAATAGAAAGAATGAAAATGAATGAAACGCTGTCGTATTTGCTTTGGTATATATACTTCTCAACTCACTTCCTGTCTCAAAGATCACAAAAACCCTAATAGCCGCCGCTTCTCCCTCCGCCGTTTCTCCCTCCGCCATTTCTCCCTCCGGCCGTTTCTCGCTCCGCCTTTTCTCACTTTGTTGTTCCAGATCTCTCCTCACATCGTTCTTCTAGTGTAA

Protein sequence

>MS.gene013003.t1

MQSTNGSDSKPTEQSNNNRPQQKTPPPPSPHSLTVPPPHQWVPMQYPPAAMVMPHHMLPPQHYPPPPHHYMAYHHYLHHVPHVHHGSSAADNKTLWIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFRSEFGSPWNGPAYYGGPAYDGYGYAMPHPYDQSMYAAAYPMYGGHQQQVIENHRFYRGVTIEFIYNNLPIAEFQNRIQVTFGLNGRAGQETANPAQTAQPAKPEPLRSGYPVKAGPTVSKEWFGLVKEGSVRFEFSGPSEPNTDRPNHKNPNSRRFSLRRFSLRHFSLRPFLAPPFLTLLFQISPHIVLLV