AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67091

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67091.t1 MTR_1g020080 92.806 278 4 2 1 262 1 278 0.0 534
MS.gene67091.t1 MTR_1g020080 92.806 278 4 2 1 262 1 278 0.0 531
MS.gene67091.t1 MTR_1g020080 24.581 179 111 4 92 248 186 362 2.37e-11 63.9
MS.gene67091.t1 MTR_3g101370 65.734 286 63 7 1 262 1 275 4.09e-118 340
MS.gene67091.t1 MTR_3g101370 65.734 286 63 7 1 262 1 275 5.43e-116 339
MS.gene67091.t1 MTR_4g086600 64.362 188 47 2 94 261 114 301 9.02e-83 255
MS.gene67091.t1 MTR_2g097960 59.259 189 62 1 88 261 7 195 3.35e-74 233
MS.gene67091.t1 MTR_2g022950 55.869 213 75 3 70 263 34 246 1.98e-73 226
MS.gene67091.t1 MTR_2g022950 56.039 207 74 2 72 261 36 242 2.41e-72 223
MS.gene67091.t1 MTR_2g022950 55.981 209 75 2 70 261 34 242 9.08e-71 223
MS.gene67091.t1 MTR_4g131970 60.795 176 54 1 94 254 72 247 4.51e-70 221
MS.gene67091.t1 MTR_4g124940 30.994 171 96 5 96 252 46 208 1.09e-20 90.9
MS.gene67091.t1 MTR_3g109090 30.994 171 96 4 96 252 44 206 1.91e-19 87.4
MS.gene67091.t1 MTR_3g109090 26.178 191 93 5 98 247 131 314 1.67e-12 67.4
MS.gene67091.t1 MTR_3g109090 30.994 171 96 4 96 252 60 222 2.19e-19 87.4
MS.gene67091.t1 MTR_3g109090 26.178 191 93 5 98 247 147 330 1.84e-12 67.0
MS.gene67091.t1 MTR_8g022050 29.825 171 98 5 96 252 62 224 7.72e-19 85.9
MS.gene67091.t1 MTR_1g056520 28.283 198 117 6 87 261 99 294 1.74e-15 75.1
MS.gene67091.t1 MTR_3g065190 26.263 198 119 5 81 263 16 201 3.38e-15 75.1
MS.gene67091.t1 MTR_4g085540 30.000 180 103 5 98 260 124 297 3.43e-15 75.5
MS.gene67091.t1 MTR_4g104470 26.702 191 101 5 94 256 120 299 1.13e-14 72.8
MS.gene67091.t1 MTR_7g102730 28.729 181 102 6 97 258 11 183 1.46e-13 70.5
MS.gene67091.t1 MTR_1g064230 27.461 193 107 3 95 254 83 275 1.73e-12 66.2
MS.gene67091.t1 MTR_1g045510 27.841 176 105 4 98 256 115 285 2.07e-12 66.2
MS.gene67091.t1 MTR_1g019150 27.419 186 117 5 98 268 122 304 2.60e-12 67.0
MS.gene67091.t1 MTR_1g019150 26.946 167 102 4 97 249 33 193 6.09e-12 65.9
MS.gene67091.t1 MTR_3g102040 29.341 167 98 6 97 249 25 185 3.51e-12 66.6
MS.gene67091.t1 MTR_6g004810 24.038 208 129 4 64 257 23 215 2.71e-11 63.5
MS.gene67091.t1 MTR_1g061870 24.405 168 105 4 97 249 16 176 2.99e-11 63.5
MS.gene67091.t1 MTR_6g040190 24.706 170 108 4 94 249 23 186 6.33e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67091.t1 AT1G47490 56.981 265 78 9 18 261 35 284 1.02e-94 281
MS.gene67091.t1 AT1G47490 56.981 265 78 9 18 261 35 284 1.10e-92 280
MS.gene67091.t1 AT1G47500 60.369 217 58 4 63 261 80 286 1.26e-83 253
MS.gene67091.t1 AT3G19130 51.211 289 113 6 1 261 1 289 1.55e-83 257
MS.gene67091.t1 AT1G47500 60.369 217 58 4 63 261 80 286 4.67e-82 253
MS.gene67091.t1 AT1G49600 53.750 240 83 6 56 268 71 309 9.78e-77 240
MS.gene67091.t1 AT1G49600 61.376 189 56 3 90 261 112 300 3.11e-76 239
MS.gene67091.t1 AT1G49600 61.376 189 56 3 90 261 112 300 3.11e-76 239
MS.gene67091.t1 AT5G19350 59.563 183 58 2 94 261 22 203 5.01e-70 222
MS.gene67091.t1 AT5G19350 59.563 183 58 2 94 261 22 203 5.27e-70 222
MS.gene67091.t1 AT1G11650 49.020 255 98 6 37 267 2 248 3.59e-69 216
MS.gene67091.t1 AT1G11650 49.020 255 98 6 37 267 2 248 7.29e-68 216
MS.gene67091.t1 AT4G27000 55.440 193 71 1 90 267 74 266 1.05e-66 213
MS.gene67091.t1 AT5G54900 52.451 204 81 2 80 267 44 247 1.54e-63 204
MS.gene67091.t1 AT3G14100 33.898 177 95 5 96 258 59 227 2.50e-24 101
MS.gene67091.t1 AT1G54080 33.889 180 97 5 96 261 63 234 8.38e-24 99.8
MS.gene67091.t1 AT1G54080 33.152 184 97 5 96 261 63 238 3.18e-23 98.2
MS.gene67091.t1 AT1G17370 31.111 180 102 5 96 261 54 225 9.80e-22 94.0
MS.gene67091.t1 AT1G17370 31.111 180 102 5 96 261 54 225 1.13e-21 94.0
MS.gene67091.t1 AT3G13224 25.789 190 124 2 81 256 4 190 1.48e-14 73.2
MS.gene67091.t1 AT3G52380 25.641 195 109 4 91 255 111 299 2.05e-14 72.4
MS.gene67091.t1 AT2G18510 24.747 198 122 5 81 263 16 201 2.48e-14 72.4
MS.gene67091.t1 AT3G13224 26.286 175 112 2 96 256 10 181 5.13e-14 71.2
MS.gene67091.t1 AT2G37220 26.943 193 103 4 98 254 93 283 1.20e-12 67.0
MS.gene67091.t1 AT1G60000 27.072 181 105 4 95 255 84 257 2.55e-12 65.5
MS.gene67091.t1 AT2G23350 25.824 182 118 4 98 266 136 313 5.65e-12 65.9
MS.gene67091.t1 AT1G34140 25.749 167 106 3 98 251 33 194 7.44e-12 65.5
MS.gene67091.t1 AT3G16380 23.832 214 137 5 66 255 172 383 9.12e-12 65.1
MS.gene67091.t1 AT5G50250 27.027 185 102 5 94 254 111 286 3.93e-11 62.4

Find 73 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGCTTTCCGTTTGAAC+TGG 0.327481 1.3:-3684761 MS.gene67091:CDS
AGCGGTATTTCAGAGGGTTA+TGG 0.369552 1.3:-3684861 MS.gene67091:CDS
GTTGTTTATGATGCCAATAC+TGG 0.378361 1.3:-3684598 MS.gene67091:CDS
CGGAAAGCTTGATCAGCATT+TGG 0.391386 1.3:+3684771 None:intergenic
TTCAGAGGGTTATGGATTTG+TGG 0.411843 1.3:-3684853 MS.gene67091:CDS
GGCTATGGATTCGTCAGGTT+CGG 0.440915 1.3:-3684565 MS.gene67091:CDS
GCCCTTTGAACGGCCAGTAT+TGG 0.441892 1.3:+3684585 None:intergenic
GCCAATACTGGCCGTTCAAA+GGG 0.443933 1.3:-3684586 MS.gene67091:CDS
CAAAGTCTTATTCTCTCCAT+TGG 0.446326 1.3:+3686543 None:intergenic
ATGGAGAGAATAAGACTTTG+TGG 0.457513 1.3:-3686540 MS.gene67091:CDS
GGATTGGTGATTTGCATAGC+TGG 0.459794 1.3:-3686519 MS.gene67091:CDS
CACTGTTGTGGTACCGCCAC+CGG 0.462244 1.3:+3686736 None:intergenic
GATTTGGCATACCTTGTTGA+TGG 0.463014 1.3:+3684440 None:intergenic
TCTAGCAGGCCCATGCGTAT+TGG 0.469784 1.3:-3684490 MS.gene67091:CDS
GCAACTCCAAGGAAATCATC+TGG 0.473764 1.3:-3684463 MS.gene67091:CDS
CAAAGGGCTATGGATTCGTC+AGG 0.476987 1.3:-3684570 MS.gene67091:CDS
ACAACCACCGGCACCGGTGG+CGG 0.480339 1.3:-3686749 MS.gene67091:CDS
TGATGGCCAGATGATTTCCT+TGG 0.482556 1.3:+3684457 None:intergenic
GCAACAACGACAACAACCAC+CGG 0.486450 1.3:-3686761 MS.gene67091:CDS
GGCATTACCATCGCCGCTGT+TGG 0.497740 1.3:+3686697 None:intergenic
TGCCAATACTGGCCGTTCAA+AGG 0.499946 1.3:-3684587 MS.gene67091:CDS
TGTGGTACCGCCACCGGTGC+CGG 0.505054 1.3:+3686742 None:intergenic
TGCTTGTTCGTCGTCTCCGA+CGG 0.505441 1.3:+3686781 None:intergenic
CAGAATCAGCATGGATCCAA+TGG 0.506359 1.3:-3686559 MS.gene67091:CDS
AGATGAAAGCGAGAGATCTC+AGG 0.512411 1.3:-3684542 MS.gene67091:CDS
ACGACAACAACCACCGGCAC+CGG 0.518451 1.3:-3686755 MS.gene67091:CDS
GCAGTATCCAACAGCGGCGA+TGG 0.519510 1.3:-3686704 MS.gene67091:CDS
AACATTTAGCACAGGAGACA+AGG 0.521571 1.3:-3684736 MS.gene67091:CDS
CGTTGATGAATCTGAACCGT+TGG 0.521826 1.3:+3686804 None:intergenic
TCAAGCTTTCCGTTTGAACT+GGG 0.522222 1.3:-3684760 MS.gene67091:CDS
TGATGGTGATGGTGGTGATA+AGG 0.523041 1.3:+3686628 None:intergenic
TAAATGTTGCCCAGTTCAAA+CGG 0.531857 1.3:+3684751 None:intergenic
CTGTAAAACTTTCTCAGCTG+TGG 0.534907 1.3:+3684815 None:intergenic
TGGTGGTGATAAGGAACATA+TGG 0.535481 1.3:+3686637 None:intergenic
ACTGGCCGTTCAAAGGGCTA+TGG 0.536195 1.3:-3684580 MS.gene67091:CDS
AACTGGGCAACATTTAGCAC+AGG 0.537123 1.3:-3684744 MS.gene67091:CDS
CTTATTGCGAATAACCTTGA+CGG 0.546836 1.3:+3684887 None:intergenic
TGATGATTCTGATGCTGATG+TGG 0.547295 1.3:+3686580 None:intergenic
GAGAATAAGACTTTGTGGAT+TGG 0.547399 1.3:-3686535 MS.gene67091:CDS
ACAACAACCACCGGCACCGG+TGG 0.554952 1.3:-3686752 MS.gene67091:CDS
ACGGTGTTTACTGTTCTAGC+AGG 0.560152 1.3:-3684504 MS.gene67091:CDS
GGCGGCGGCGCGTAATGTTG+AGG 0.570717 1.3:+3686658 None:intergenic
TGATGTGGCGGCACGTGCAA+CGG 0.578285 1.3:+3686595 None:intergenic
GCCGCTGTTGGATACTGCAT+CGG 0.584942 1.3:+3686709 None:intergenic
TGGTGATTTGCATAGCTGGA+TGG 0.585911 1.3:-3686515 MS.gene67091:CDS
AGTTGCAGCACCAATACGCA+TGG 0.588428 1.3:+3684480 None:intergenic
TAAGCACAGCGGTATTTCAG+AGG 0.593724 1.3:-3684868 MS.gene67091:CDS
GTTGAAACTGATGGTGATGG+TGG 0.595592 1.3:+3686620 None:intergenic
TTTGCAGATTACCTCCGTCA+AGG 0.598780 1.3:-3684901 MS.gene67091:intron
TTCAGATTCATCAACGCCGT+CGG 0.610388 1.3:-3686797 MS.gene67091:CDS
CAGAATCATCAGAATCAGCA+TGG 0.613279 1.3:-3686568 MS.gene67091:CDS
AAGCACAGCGGTATTTCAGA+GGG 0.617802 1.3:-3684867 MS.gene67091:CDS
GTATTGGTGCTGCAACTCCA+AGG 0.620390 1.3:-3684474 MS.gene67091:CDS
GTTGCAGCACCAATACGCAT+GGG 0.620904 1.3:+3684481 None:intergenic
ATTAAGATGCAACAAACCAA+CGG 0.621224 1.3:-3686820 None:intergenic
AAATCATCTGGCCATCAACA+AGG 0.629348 1.3:-3684451 MS.gene67091:intron
GGCGGCGCGTAATGTTGAGG+TGG 0.632098 1.3:+3686661 None:intergenic
CGAATCCATAGCCCTTTGAA+CGG 0.643491 1.3:+3684575 None:intergenic
GCAACGGTTGTTGAAACTGA+TGG 0.643635 1.3:+3686611 None:intergenic
TGATAAGGAACATATGGCGG+CGG 0.643784 1.3:+3686643 None:intergenic
TGCATCGGAATCCACTGTTG+TGG 0.651631 1.3:+3686724 None:intergenic
CGGTGGCGGTACCACAACAG+TGG 0.654273 1.3:-3686735 MS.gene67091:CDS
TGATTCTGATGCTGATGTGG+CGG 0.656281 1.3:+3686583 None:intergenic
TAGCACAGGAGACAAGGGAT+CGG 0.659903 1.3:-3684730 MS.gene67091:CDS
ACATTTAGCACAGGAGACAA+GGG 0.668527 1.3:-3684735 MS.gene67091:CDS
GGTACCGCCACCGGTGCCGG+TGG 0.668876 1.3:+3686745 None:intergenic
CAGGCTATGACTCAAATGAA+CGG 0.669010 1.3:-3684523 MS.gene67091:CDS
TGGTGATAAGGAACATATGG+CGG 0.679076 1.3:+3686640 None:intergenic
TGAGGTGGCATCATGTGATG+TGG 0.687592 1.3:+3686676 None:intergenic
GTTGTTGAAACTGATGGTGA+TGG 0.688940 1.3:+3686617 None:intergenic
ATTGCGAATAACCTTGACGG+AGG 0.706195 1.3:+3684890 None:intergenic
TCCGATGCAGTATCCAACAG+CGG 0.717111 1.3:-3686710 MS.gene67091:CDS
GTTATTCGCAATAAGCACAG+CGG 0.787456 1.3:-3684879 MS.gene67091:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATTTTTCAATCTATA+AGG + chr1.3:3685324-3685343 None:intergenic 10.0%
!! TATTGTTAAAAATTTGTCAT+TGG - chr1.3:3684857-3684876 MS.gene67091:CDS 15.0%
!!! GAAATTTTATTCTTTCATTT+GGG - chr1.3:3686701-3686720 MS.gene67091:CDS 15.0%
!!! TGAAATTTTATTCTTTCATT+TGG - chr1.3:3686700-3686719 MS.gene67091:CDS 15.0%
!! ATTTGTCATTGGAAATTTAT+AGG - chr1.3:3684868-3684887 MS.gene67091:CDS 20.0%
!! GGAAATTTATAGGTTAAATA+TGG - chr1.3:3684878-3684897 MS.gene67091:CDS 20.0%
!! TAAATGAAGTTGAAAATACT+TGG - chr1.3:3685673-3685692 MS.gene67091:intron 20.0%
!! TATGTTAAACGAAAATTGAT+GGG - chr1.3:3685949-3685968 MS.gene67091:intron 20.0%
!! TTTGATATAGAATCCTATTA+AGG - chr1.3:3686148-3686167 MS.gene67091:intron 20.0%
!!! AAGTCTATATTTTACTTCTT+TGG - chr1.3:3685858-3685877 MS.gene67091:intron 20.0%
!!! TTTATTTTCAACTTCAAATG+TGG + chr1.3:3685498-3685517 None:intergenic 20.0%
! AAACAATAACCAAACATGTT+TGG + chr1.3:3684660-3684679 None:intergenic 25.0%
! AATCTTTGTGAATTGAAGAA+TGG - chr1.3:3685524-3685543 MS.gene67091:intron 25.0%
! ACAAAAGCAAATATGTGATT+TGG + chr1.3:3686676-3686695 None:intergenic 25.0%
! ACATGTCAATACATAAAAGT+TGG + chr1.3:3685893-3685912 None:intergenic 25.0%
! ATCACAATTTAATGCATGTT+TGG + chr1.3:3685654-3685673 None:intergenic 25.0%
! GTAAAATATAGACTTCTAGT+AGG + chr1.3:3685853-3685872 None:intergenic 25.0%
! GTATGTTAAACGAAAATTGA+TGG - chr1.3:3685948-3685967 MS.gene67091:intron 25.0%
! TCAATATGAGGTAATATAGA+TGG + chr1.3:3686776-3686795 None:intergenic 25.0%
! TTCGTTTAACATACATCAAA+TGG + chr1.3:3685942-3685961 None:intergenic 25.0%
! TTTATTCTTTCATTTGGGAA+AGG - chr1.3:3686706-3686725 MS.gene67091:CDS 25.0%
!! AAAGTTTTACAGAATTATGC+TGG - chr1.3:3686293-3686312 MS.gene67091:intron 25.0%
!! AACACAAAACACATTCATTT+TGG + chr1.3:3685710-3685729 None:intergenic 25.0%
!! ATGGTTTGCAATAATAAATG+TGG - chr1.3:3685147-3685166 MS.gene67091:intron 25.0%
!! GAAGTATAACATTTTATTCC+AGG + chr1.3:3685748-3685767 None:intergenic 25.0%
!!! AACTTTTATGTATTGACATG+TGG - chr1.3:3685892-3685911 MS.gene67091:intron 25.0%
!!! TGTTTTTTTCCAAACATGTT+TGG - chr1.3:3684648-3684667 MS.gene67091:intron 25.0%
AAGCACAAAATTAGTAGCAT+AGG + chr1.3:3685576-3685595 None:intergenic 30.0%
ATGCATGTTTGGAAATATGT+TGG + chr1.3:3685643-3685662 None:intergenic 30.0%
CTTGAGTTTGTGATAAATGA+AGG - chr1.3:3685805-3685824 MS.gene67091:intron 30.0%
GTTCCTTAAAGAGACTAAAA+TGG - chr1.3:3684973-3684992 MS.gene67091:intron 30.0%
GTTTCTTTAATGTTATAGCC+TGG - chr1.3:3685727-3685746 MS.gene67091:intron 30.0%
TCCTTAGAATGAAATTTGGA+AGG - chr1.3:3685471-3685490 MS.gene67091:intron 30.0%
TCCTTCCAAATTTCATTCTA+AGG + chr1.3:3685475-3685494 None:intergenic 30.0%
TCCTTCCTTAGAATGAAATT+TGG - chr1.3:3685467-3685486 MS.gene67091:intron 30.0%
TTCAATCTATAAGGTCATCA+AGG + chr1.3:3685315-3685334 None:intergenic 30.0%
TTGTTCAGGAATTGAAAAGT+GGG + chr1.3:3684931-3684950 None:intergenic 30.0%
TTTGTTCAGGAATTGAAAAG+TGG + chr1.3:3684932-3684951 None:intergenic 30.0%
! ATTGTGATTTAAAACCATGG+TGG - chr1.3:3685216-3685235 MS.gene67091:intron 30.0%
! GCAATTGTGATTTAAAACCA+TGG - chr1.3:3685213-3685232 MS.gene67091:intron 30.0%
! TATGCTACTAATTTTGTGCT+TGG - chr1.3:3685575-3685594 MS.gene67091:intron 30.0%
! TCCAAATTTCATTCTAAGGA+AGG + chr1.3:3685471-3685490 None:intergenic 30.0%
! TGTACTTCTGTATTTTGTTC+AGG + chr1.3:3684945-3684964 None:intergenic 30.0%
! TTAGTCCCGAAAATATTTTG+TGG - chr1.3:3684903-3684922 MS.gene67091:intron 30.0%
! TTTTGTGCTTGGAAATCTAT+TGG - chr1.3:3685586-3685605 MS.gene67091:intron 30.0%
!!! ACTGATCTGTCTATTTTTGT+AGG - chr1.3:3686398-3686417 MS.gene67091:intron 30.0%
!!! TGTTTTGATATTGATGCACA+TGG - chr1.3:3685185-3685204 MS.gene67091:intron 30.0%
AAACCATGGTGGTTCTTTAT+TGG - chr1.3:3685227-3685246 MS.gene67091:intron 35.0%
ACGAAAATTGATGGGAACTT+TGG - chr1.3:3685957-3685976 MS.gene67091:intron 35.0%
ATGGAGAGAATAAGACTTTG+TGG - chr1.3:3684557-3684576 MS.gene67091:CDS 35.0%
CAGCAGAACAAATCAATATG+AGG + chr1.3:3686788-3686807 None:intergenic 35.0%
CGAAAATTGATGGGAACTTT+GGG - chr1.3:3685958-3685977 MS.gene67091:intron 35.0%
CTTATTGCGAATAACCTTGA+CGG + chr1.3:3686213-3686232 None:intergenic 35.0%
GAGAATAAGACTTTGTGGAT+TGG - chr1.3:3684562-3684581 MS.gene67091:CDS 35.0%
GAGTTTGTGATAAATGAAGG+TGG - chr1.3:3685808-3685827 MS.gene67091:intron 35.0%
GTGACAGTCAAAACCTTAAT+AGG + chr1.3:3686164-3686183 None:intergenic 35.0%
GTTATGACAGAAGATGTTGA+TGG - chr1.3:3686109-3686128 MS.gene67091:intron 35.0%
GTTGTTTATGATGCCAATAC+TGG - chr1.3:3686499-3686518 MS.gene67091:CDS 35.0%
TAAATGTTGCCCAGTTCAAA+CGG + chr1.3:3686349-3686368 None:intergenic 35.0%
TTAAAGAGACTAAAATGGCC+TGG - chr1.3:3684978-3684997 MS.gene67091:intron 35.0%
! GTTTTTATGCTTGTGAAGTG+TGG - chr1.3:3685107-3685126 MS.gene67091:intron 35.0%
!! ACTTTTGCAGCTTTAACAGA+AGG + chr1.3:3686481-3686500 None:intergenic 35.0%
!! AGGCCATTTTAGTCTCTTTA+AGG + chr1.3:3684979-3684998 None:intergenic 35.0%
!! ATATTGATTTGTTCTGCTGC+AGG - chr1.3:3686789-3686808 MS.gene67091:CDS 35.0%
!! CAAAGTCTTATTCTCTCCAT+TGG + chr1.3:3684557-3684576 None:intergenic 35.0%
!! CAGAACTACTCTGAAACAAT+CGG + chr1.3:3686027-3686046 None:intergenic 35.0%
!! TGGGTGCCACAAAATATTTT+CGG + chr1.3:3684912-3684931 None:intergenic 35.0%
AAATCATCTGGCCATCAACA+AGG - chr1.3:3686646-3686665 MS.gene67091:CDS 40.0%
AACATTTAGCACAGGAGACA+AGG - chr1.3:3686361-3686380 MS.gene67091:intron 40.0%
ACATGTCGAGAATACTAGCT+AGG + chr1.3:3685434-3685453 None:intergenic 40.0%
ACATTTAGCACAGGAGACAA+GGG - chr1.3:3686362-3686381 MS.gene67091:intron 40.0%
ATCAAGCTTTCCGTTTGAAC+TGG - chr1.3:3686336-3686355 MS.gene67091:intron 40.0%
ATCTTTGGACGGAATGTTCA+AGG + chr1.3:3686745-3686764 None:intergenic 40.0%
ATTGACATGTGGCCTAATGA+TGG - chr1.3:3685903-3685922 MS.gene67091:intron 40.0%
CAACCAATAAAGAACCACCA+TGG + chr1.3:3685233-3685252 None:intergenic 40.0%
CAGAATCATCAGAATCAGCA+TGG - chr1.3:3684529-3684548 MS.gene67091:CDS 40.0%
CAGGCTATGACTCAAATGAA+CGG - chr1.3:3686574-3686593 MS.gene67091:CDS 40.0%
CTGTAAAACTTTCTCAGCTG+TGG + chr1.3:3686285-3686304 None:intergenic 40.0%
CTTGTGAAGTGTGGACAAAA+GGG - chr1.3:3685116-3685135 MS.gene67091:intron 40.0%
GATTTGGCATACCTTGTTGA+TGG + chr1.3:3686660-3686679 None:intergenic 40.0%
GGACAAAAGGGTTTGGAAAA+TGG - chr1.3:3685128-3685147 MS.gene67091:intron 40.0%
GTTATTCGCAATAAGCACAG+CGG - chr1.3:3686218-3686237 MS.gene67091:intron 40.0%
TCAAGCTTTCCGTTTGAACT+GGG - chr1.3:3686337-3686356 MS.gene67091:intron 40.0%
TCTTTGGACGGAATGTTCAA+GGG + chr1.3:3686744-3686763 None:intergenic 40.0%
TGATGATTCTGATGCTGATG+TGG + chr1.3:3684520-3684539 None:intergenic 40.0%
TGGTGATAAGGAACATATGG+CGG + chr1.3:3684460-3684479 None:intergenic 40.0%
TTCAGAGGGTTATGGATTTG+TGG - chr1.3:3686244-3686263 MS.gene67091:intron 40.0%
! ACCATTTTGCCACCATCATT+AGG + chr1.3:3685918-3685937 None:intergenic 40.0%
! GTTGTTGAAACTGATGGTGA+TGG + chr1.3:3684483-3684502 None:intergenic 40.0%
! TGGGAACTTTGGGAATTATG+TGG - chr1.3:3685968-3685987 MS.gene67091:intron 40.0%
! TGGTGGTGATAAGGAACATA+TGG + chr1.3:3684463-3684482 None:intergenic 40.0%
!! GGGTGCCACAAAATATTTTC+GGG + chr1.3:3684911-3684930 None:intergenic 40.0%
!! GTCTCTATACTCACTTTTCC+AGG + chr1.3:3684999-3685018 None:intergenic 40.0%
!! TAGATGGCTAGAAGCATCTT+TGG + chr1.3:3686760-3686779 None:intergenic 40.0%
AACTGGGCAACATTTAGCAC+AGG - chr1.3:3686353-3686372 MS.gene67091:intron 45.0%
AAGCACAGCGGTATTTCAGA+GGG - chr1.3:3686230-3686249 MS.gene67091:intron 45.0%
ACGGTGTTTACTGTTCTAGC+AGG - chr1.3:3686593-3686612 MS.gene67091:CDS 45.0%
AGATGAAAGCGAGAGATCTC+AGG - chr1.3:3686555-3686574 MS.gene67091:CDS 45.0%
AGCGGTATTTCAGAGGGTTA+TGG - chr1.3:3686236-3686255 MS.gene67091:intron 45.0%
ATTGCGAATAACCTTGACGG+AGG + chr1.3:3686210-3686229 None:intergenic 45.0%
CAGAATCAGCATGGATCCAA+TGG - chr1.3:3684538-3684557 MS.gene67091:CDS 45.0%
CGAATCCATAGCCCTTTGAA+CGG + chr1.3:3686525-3686544 None:intergenic 45.0%
CGGAAAGCTTGATCAGCATT+TGG + chr1.3:3686329-3686348 None:intergenic 45.0%
GAAGTGTGGACAAAAGGGTT+TGG - chr1.3:3685121-3685140 MS.gene67091:intron 45.0%
GCAACGGTTGTTGAAACTGA+TGG + chr1.3:3684489-3684508 None:intergenic 45.0%
GCAACTCCAAGGAAATCATC+TGG - chr1.3:3686634-3686653 MS.gene67091:CDS 45.0%
GCTTGTGAAGTGTGGACAAA+AGG - chr1.3:3685115-3685134 MS.gene67091:intron 45.0%
GGAGAGACACATCAAATCAG+AGG - chr1.3:3685607-3685626 MS.gene67091:intron 45.0%
TAAGCACAGCGGTATTTCAG+AGG - chr1.3:3686229-3686248 MS.gene67091:intron 45.0%
TGATAAGGAACATATGGCGG+CGG + chr1.3:3684457-3684476 None:intergenic 45.0%
TGATGGCCAGATGATTTCCT+TGG + chr1.3:3686643-3686662 None:intergenic 45.0%
TGATTCTGATGCTGATGTGG+CGG + chr1.3:3684517-3684536 None:intergenic 45.0%
TTCAGATTCATCAACGCCGT+CGG - chr1.3:3684300-3684319 MS.gene67091:intron 45.0%
TTTGCAGATTACCTCCGTCA+AGG - chr1.3:3686196-3686215 MS.gene67091:intron 45.0%
! CGTTGATGAATCTGAACCGT+TGG + chr1.3:3684296-3684315 None:intergenic 45.0%
! CTAGGTTGAGTGTACTAGCT+AGG + chr1.3:3685416-3685435 None:intergenic 45.0%
! CTGTTTTGCTTCTACTGGAG+AGG - chr1.3:3684624-3684643 MS.gene67091:intron 45.0%
! GGATTGGTGATTTGCATAGC+TGG - chr1.3:3684578-3684597 MS.gene67091:CDS 45.0%
! TGGTGATTTGCATAGCTGGA+TGG - chr1.3:3684582-3684601 MS.gene67091:CDS 45.0%
!! CATCGCTGTTTTGCTTCTAC+TGG - chr1.3:3684619-3684638 MS.gene67091:intron 45.0%
!! GCCTAATGATGGTGGCAAAA+TGG - chr1.3:3685914-3685933 MS.gene67091:intron 45.0%
!! GTTGAAACTGATGGTGATGG+TGG + chr1.3:3684480-3684499 None:intergenic 45.0%
!! TGATGGTGATGGTGGTGATA+AGG + chr1.3:3684472-3684491 None:intergenic 45.0%
!! TGGCTAGAAGCATCTTTGGA+CGG + chr1.3:3686756-3686775 None:intergenic 45.0%
!!! AAAACAAAATTATAAATTTT+AGG + chr1.3:3685069-3685088 None:intergenic 5.0%
AGTTGCAGCACCAATACGCA+TGG + chr1.3:3686620-3686639 None:intergenic 50.0%
CAAAGGGCTATGGATTCGTC+AGG - chr1.3:3686527-3686546 MS.gene67091:CDS 50.0%
GACATGTGGCCTAATGATGG+TGG - chr1.3:3685906-3685925 MS.gene67091:intron 50.0%
GCAACAACGACAACAACCAC+CGG - chr1.3:3684336-3684355 MS.gene67091:intron 50.0%
GCCAATACTGGCCGTTCAAA+GGG - chr1.3:3686511-3686530 MS.gene67091:CDS 50.0%
GGCTATGGATTCGTCAGGTT+CGG - chr1.3:3686532-3686551 MS.gene67091:CDS 50.0%
GTTGCAGCACCAATACGCAT+GGG + chr1.3:3686619-3686638 None:intergenic 50.0%
TAGCACAGGAGACAAGGGAT+CGG - chr1.3:3686367-3686386 MS.gene67091:intron 50.0%
TCCGATGCAGTATCCAACAG+CGG - chr1.3:3684387-3684406 MS.gene67091:intron 50.0%
TGAGGTGGCATCATGTGATG+TGG + chr1.3:3684424-3684443 None:intergenic 50.0%
TGCATCGGAATCCACTGTTG+TGG + chr1.3:3684376-3684395 None:intergenic 50.0%
TGCCAATACTGGCCGTTCAA+AGG - chr1.3:3686510-3686529 MS.gene67091:CDS 50.0%
!! GTATTGGTGCTGCAACTCCA+AGG - chr1.3:3686623-3686642 MS.gene67091:CDS 50.0%
ACTGGCCGTTCAAAGGGCTA+TGG - chr1.3:3686517-3686536 MS.gene67091:CDS 55.0%
GCCCTTTGAACGGCCAGTAT+TGG + chr1.3:3686515-3686534 None:intergenic 55.0%
GCCGCTGTTGGATACTGCAT+CGG + chr1.3:3684391-3684410 None:intergenic 55.0%
TCTAGCAGGCCCATGCGTAT+TGG - chr1.3:3686607-3686626 MS.gene67091:CDS 55.0%
TGCTTGTTCGTCGTCTCCGA+CGG + chr1.3:3684319-3684338 None:intergenic 55.0%
ACGACAACAACCACCGGCAC+CGG - chr1.3:3684342-3684361 MS.gene67091:intron 60.0%
CACTGTTGTGGTACCGCCAC+CGG + chr1.3:3684364-3684383 None:intergenic 60.0%
GCAGTATCCAACAGCGGCGA+TGG - chr1.3:3684393-3684412 MS.gene67091:intron 60.0%
GGCATTACCATCGCCGCTGT+TGG + chr1.3:3684403-3684422 None:intergenic 60.0%
TGATGTGGCGGCACGTGCAA+CGG + chr1.3:3684505-3684524 None:intergenic 60.0%
GGCGGCGCGTAATGTTGAGG+TGG + chr1.3:3684439-3684458 None:intergenic 65.0%
! ACAACAACCACCGGCACCGG+TGG - chr1.3:3684345-3684364 MS.gene67091:intron 65.0%
! CGGTGGCGGTACCACAACAG+TGG - chr1.3:3684362-3684381 MS.gene67091:intron 65.0%
GGCGGCGGCGCGTAATGTTG+AGG + chr1.3:3684442-3684461 None:intergenic 70.0%
TGTGGTACCGCCACCGGTGC+CGG + chr1.3:3684358-3684377 None:intergenic 70.0%
!! ACAACCACCGGCACCGGTGG+CGG - chr1.3:3684348-3684367 MS.gene67091:intron 70.0%
!! GGTACCGCCACCGGTGCCGG+TGG + chr1.3:3684355-3684374 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 3684283 3686836 3684283 ID=MS.gene67091
chr1.3 mRNA 3684283 3686836 3684283 ID=MS.gene67091.t1;Parent=MS.gene67091
chr1.3 exon 3686474 3686836 3686474 ID=MS.gene67091.t1.exon1;Parent=MS.gene67091.t1
chr1.3 CDS 3686474 3686836 3686474 ID=cds.MS.gene67091.t1;Parent=MS.gene67091.t1
chr1.3 exon 3684673 3684916 3684673 ID=MS.gene67091.t1.exon2;Parent=MS.gene67091.t1
chr1.3 CDS 3684673 3684916 3684673 ID=cds.MS.gene67091.t1;Parent=MS.gene67091.t1
chr1.3 exon 3684452 3684628 3684452 ID=MS.gene67091.t1.exon3;Parent=MS.gene67091.t1
chr1.3 CDS 3684452 3684628 3684452 ID=cds.MS.gene67091.t1;Parent=MS.gene67091.t1
chr1.3 exon 3684283 3684308 3684283 ID=MS.gene67091.t1.exon4;Parent=MS.gene67091.t1
chr1.3 CDS 3684283 3684308 3684283 ID=cds.MS.gene67091.t1;Parent=MS.gene67091.t1
Gene Sequence

>MS.gene67091

ATGCAACAAACCAACGGTTCAGATTCATCAACGCCGTCGGAGACGACGAACAAGCAACAACGACAACAACCACCGGCACCGGTGGCGGTACCACAACAGTGGATTCCGATGCAGTATCCAACAGCGGCGATGGTAATGCCACATCACATGATGCCACCTCAACATTACGCGCCGCCGCCATATGTTCCTTATCACCACCATCACCATCAGTTTCAACAACCGTTGCACGTGCCGCCACATCAGCATCAGAATCATCAGAATCAGCATGGATCCAATGGAGAGAATAAGACTTTGTGGATTGGTGATTTGCATAGCTGGATGGATGAGAGTTATCTTCATCGCTGTTTTGCTTCTACTGGAGAGGTTGTTTTTTTCCAAACATGTTTGGTTATTGTTTTTTGAAACATGTTTGTGTTTATGTGTTACATTGTATGTTAATTGTTTGCATGCTTGAATTTGTTATGTTCTAGATTTATGTTTGTTTAAGATAAATTATTATAAATTTGTGTTTATGAAAAAGCTGAATAAGAGTTTTTTAAAAATTGAGATTTAAAAACTTATGCTAAAAAGCTAGTATTGTTAAAAATTTGTCATTGGAAATTTATAGGTTAAATATGGTTTTAGTCCCGAAAATATTTTGTGGCACCCACTTTTCAATTCCTGAACAAAATACAGAAGTACATGTTTTTAGTTCCTTAAAGAGACTAAAATGGCCTGGAAAAGTGAGTATAGAGACTAAAAACATAATTTGAAATATTTATAAGCATTGAAAACTTATTTAATCCTAAAATTTATAATTTTGTTTTTGTAAGTGATTTATCTTAGTTTTTATGCTTGTGAAGTGTGGACAAAAGGGTTTGGAAAATGGTTTGCAATAATAAATGTGGTTTTATAACGTCAAATGTTTTGATATTGATGCACATGGTAACTGCAATTGTGATTTAAAACCATGGTGGTTCTTTATTGGTTGAAAATTTATACATATCTCAAATTTTGAGAATTAATATAAATTGTGATTGCAATTTAAAACCTTGATGACCTTATAGATTGAAAAATTATATAACTCAAATTTTGAGATTTGATGTAAATTATATTCATTATACATAGTATTTTATGTGAAAATAGATTTTCCTAGCTAGTACACTCAACCTAGCTAGTATTCTCGACATGTATTTGAAAAAATTTCCTTCCTTAGAATGAAATTTGGAAGGACCACATTTGAAGTTGAAAATAAATTCATAAATCTTTGTGAATTGAAGAATGGAAAGTGAATGTGCATGACACATTTAACCTATGCTACTAATTTTGTGCTTGGAAATCTATTGGAGAGACACATCAAATCAGAGGCACTCTCTTTCCAACATATTTCCAAACATGCATTAAATTGTGATAAATGAAGTTGAAAATACTTGGAACTTTTCAAGCCAAAATGAATGTGTTTTGTGTTTCTTTAATGTTATAGCCTGGAATAAAATGTTATACTTCAATGAAGTATGCTACACTCAGCTATGTTCTACTCTATCTTGAGTTTGTGATAAATGAAGGTGGCAATAGAAGAATATCAAAGCCTACTAGAAGTCTATATTTTACTTCTTTGGTTTTATTATCCAACTTTTATGTATTGACATGTGGCCTAATGATGGTGGCAAAATGGTACCATTTGATGTATGTTAAACGAAAATTGATGGGAACTTTGGGAATTATGTGGTTGTATGTTCATTTCTGAACTCTTTAAAGATATCCGATTGTTTCAGAGTAGTTCTGCTTCTCTTCTATTCTAATTTGACGAAAATAAACTTGTATTTTGATAACTTAATTTGTTGTGAGTTATGACAGAAGATGTTGATGGTGCTTCACATATTGTTTTTGATATAGAATCCTATTAAGGTTTTGACTGTCACTCATTTTTTATTTTTGCAGATTACCTCCGTCAAGGTTATTCGCAATAAGCACAGCGGTATTTCAGAGGGTTATGGATTTGTGGAGTTCTTTTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAATTTTGATGCCAAATGCTGATCAAGCTTTCCGTTTGAACTGGGCAACATTTAGCACAGGAGACAAGGGATCGGATAATGTCACTGATCTGTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGTGTGTTGCATGAAACTTTTCTAGTTCATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTATGATGCCAATACTGGCCGTTCAAAGGGCTATGGATTCGTCAGGTTCGGAGATGAAAGCGAGAGATCTCAGGCTATGACTCAAATGAACGGTGTTTACTGTTCTAGCAGGCCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAAGGTATGCCAAATCACATATTTGCTTTTGTTAAATGAAATTTTATTCTTTCATTTGGGAAAGGAAAAAAATAGTGCCCTTGAACATTCCGTCCAAAGATGCTTCTAGCCATCTATATTACCTCATATTGATTTGTTCTGCTGCAGGTTGTTACAGAAGAACTATGATCTGA
Protein sequence

>MS.gene67091.t1

MQQTNGSDSSTPSETTNKQQRQQPPAPVAVPQQWIPMQYPTAAMVMPHHMMPPQHYAPPPYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFVEFFSHATAEKVLQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDTAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGCYRRTMI