Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045483.t1 | XP_003607599.1 | 100 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 9.90E-67 | 262.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045483.t1 | Q9LXT3 | 84.5 | 142 | 22 | 0 | 1 | 142 | 1 | 142 | 5.0e-59 | 228.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045483.t1 | B7FGN1 | 100.0 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 7.2e-67 | 262.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045483.t1 | TR | MBF1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045483 | MS.gene052439 | PPI |
| MS.gene045483 | MS.gene05524 | PPI |
| MS.gene045483 | MS.gene94585 | PPI |
| MS.gene045483 | MS.gene51432 | PPI |
| MS.gene045483 | MS.gene91241 | PPI |
| MS.gene045483 | MS.gene61422 | PPI |
| MS.gene05524 | MS.gene045483 | PPI |
| MS.gene045483 | MS.gene042957 | PPI |
| MS.gene91241 | MS.gene045483 | PPI |
| MS.gene045483 | MS.gene006697 | PPI |
| MS.gene045483 | MS.gene073154 | PPI |
| MS.gene045483 | MS.gene73865 | PPI |
| MS.gene045483 | MS.gene35285 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045483.t1 | MTR_4g080090 | 100.000 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 6.96e-101 | 285 |
| MS.gene045483.t1 | MTR_2g084220 | 91.304 | 138 | 12 | 0 | 5 | 142 | 3 | 140 | 3.37e-89 | 256 |
| MS.gene045483.t1 | MTR_6g018330 | 68.085 | 141 | 29 | 1 | 2 | 142 | 19 | 143 | 2.10e-58 | 178 |
| MS.gene045483.t1 | MTR_6g086280 | 52.174 | 138 | 66 | 0 | 4 | 141 | 9 | 146 | 2.07e-45 | 145 |
| MS.gene045483.t1 | MTR_6g086280 | 52.174 | 138 | 66 | 0 | 4 | 141 | 9 | 146 | 2.53e-45 | 145 |
| MS.gene045483.t1 | MTR_1g047000 | 90.244 | 41 | 4 | 0 | 102 | 142 | 16 | 56 | 6.14e-20 | 77.8 |
| MS.gene045483.t1 | MTR_7g117675 | 90.000 | 40 | 4 | 0 | 92 | 131 | 1 | 40 | 7.61e-19 | 75.5 |
| MS.gene045483.t1 | MTR_4g103930 | 55.844 | 77 | 21 | 1 | 32 | 95 | 45 | 121 | 7.74e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045483.t1 | AT3G58680 | 84.507 | 142 | 22 | 0 | 1 | 142 | 1 | 142 | 1.27e-86 | 249 |
| MS.gene045483.t1 | AT2G42680 | 85.915 | 142 | 20 | 0 | 1 | 142 | 1 | 142 | 1.70e-86 | 249 |
| MS.gene045483.t1 | AT3G24500 | 50.360 | 139 | 67 | 1 | 5 | 141 | 7 | 145 | 1.05e-43 | 141 |
| MS.gene045483.t1 | AT3G24500 | 43.820 | 89 | 48 | 1 | 5 | 91 | 7 | 95 | 4.69e-17 | 71.6 |
Find 38 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGGCTTTCTCATCTTTCT+TGG | 0.250063 | 4.2:+29873849 | None:intergenic |
| ATCTTTCTTGGCGGCGGCGT+TGG | 0.250269 | 4.2:+29873861 | None:intergenic |
| TTGCTAATTATCTGCTGGTT+TGG | 0.292459 | 4.2:+29871689 | None:intergenic |
| GTTCCCAATCTTGAGAAATA+TGG | 0.320777 | 4.2:+29873908 | None:intergenic |
| TTTCTTGACGGTATCGATAT+CGG | 0.338092 | 4.2:+29873804 | None:intergenic |
| TCTTTCTTGGCGGCGGCGTT+GGG | 0.340591 | 4.2:+29873862 | None:intergenic |
| GGCACGGCGAGCGGCGTTGA+CGG | 0.351560 | 4.2:+29873831 | None:intergenic |
| GTCAACGCCGCTCGCCGTGC+CGG | 0.353656 | 4.2:-29873829 | MS.gene045483:CDS |
| TAGGCCATATTTCTCAAGAT+TGG | 0.393130 | 4.2:-29873912 | MS.gene045483:CDS |
| AGCAAGTTGGAGAGAGCCCT+TGG | 0.404653 | 4.2:-29871671 | MS.gene045483:CDS |
| CCAACTTGCTAATTATCTGC+TGG | 0.425113 | 4.2:+29871684 | None:intergenic |
| AGGCCATATTTCTCAAGATT+GGG | 0.431239 | 4.2:-29873911 | MS.gene045483:CDS |
| GTGATCCAAGAGTATGAGTC+AGG | 0.431295 | 4.2:-29871722 | MS.gene045483:CDS |
| CTTTCCCTGACTCATACTCT+TGG | 0.439242 | 4.2:+29871717 | None:intergenic |
| ATCGGCGCCGGCACGGCGAG+CGG | 0.444792 | 4.2:+29873822 | None:intergenic |
| GCTTTCTTGCGGATGACGAC+TGG | 0.447489 | 4.2:+29873886 | None:intergenic |
| GAGATAAATATGTCAGGTCT+AGG | 0.459208 | 4.2:-29873931 | None:intergenic |
| AATTATCTGCTGGTTTGGAA+TGG | 0.474147 | 4.2:+29871694 | None:intergenic |
| GCACTTCATTGAACACTAAG+AGG | 0.487095 | 4.2:-29873463 | MS.gene045483:CDS |
| GGCTATAATGCAAGCTAGGA+TGG | 0.493126 | 4.2:-29871884 | MS.gene045483:CDS |
| TTCATTGAACACTAAGAGGC+TGG | 0.503842 | 4.2:-29873459 | MS.gene045483:CDS |
| TGCCACGCAGTTTAGCTCCA+AGG | 0.505877 | 4.2:+29871654 | None:intergenic |
| AACAAAGAGATAAATATGTC+AGG | 0.505887 | 4.2:-29873937 | None:intergenic |
| CCAGCAGATAATTAGCAAGT+TGG | 0.509376 | 4.2:-29871684 | MS.gene045483:CDS |
| ATAGCCTTCTTGAGTTCAGT+TGG | 0.514235 | 4.2:+29871901 | None:intergenic |
| AGAAGGCTATAATGCAAGCT+AGG | 0.515044 | 4.2:-29871888 | MS.gene045483:CDS |
| GAGGAGCGAACGTTTCTTGA+CGG | 0.526730 | 4.2:+29873792 | None:intergenic |
| CGGCGTTGGGAGCTTTCTTG+CGG | 0.528475 | 4.2:+29873875 | None:intergenic |
| GCCACGCAGTTTAGCTCCAA+GGG | 0.531362 | 4.2:+29871655 | None:intergenic |
| GGCTTTCTCATCTTTCTTGG+CGG | 0.532271 | 4.2:+29873852 | None:intergenic |
| GAACACTAAGAGGCTGGATG+AGG | 0.556069 | 4.2:-29873453 | MS.gene045483:CDS |
| GACGGTATCGATATCGGCGC+CGG | 0.571328 | 4.2:+29873810 | None:intergenic |
| TTTCTCATCTTTCTTGGCGG+CGG | 0.585231 | 4.2:+29873855 | None:intergenic |
| TGTACCAACTGAACTCAAGA+AGG | 0.594355 | 4.2:-29871905 | MS.gene045483:CDS |
| TCATACTCTTGGATCACTTG+AGG | 0.607504 | 4.2:+29871728 | None:intergenic |
| TATCGATATCGGCGCCGGCA+CGG | 0.624694 | 4.2:+29873815 | None:intergenic |
| TGATCCAAGAGTATGAGTCA+GGG | 0.648267 | 4.2:-29871721 | MS.gene045483:CDS |
| GCCCTTGGAGCTAAACTGCG+TGG | 0.653713 | 4.2:-29871656 | MS.gene045483:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTAATTAATTAGTTT+TGG | + | chr4.2:29871805-29871824 | None:intergenic | 10.0% |
| !!! | AACATTAATTAATTAGTTTT+GGG | + | chr4.2:29871804-29871823 | None:intergenic | 10.0% |
| !!! | TTTTGGTATAAAAAATATAA+TGG | + | chr4.2:29873569-29873588 | None:intergenic | 10.0% |
| !! | TAATTTCAATATATTGATCA+TGG | - | chr4.2:29871994-29872013 | MS.gene045483:intron | 15.0% |
| !! | TTCAAATTATATAATCTGAT+GGG | + | chr4.2:29873151-29873170 | None:intergenic | 15.0% |
| !! | TTTCAAATTATATAATCTGA+TGG | + | chr4.2:29873152-29873171 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTTTTTAACTCT+TGG | - | chr4.2:29871816-29871835 | MS.gene045483:intron | 15.0% |
| !!! | TTCGTAGATAAAAATAATTT+TGG | - | chr4.2:29871929-29871948 | MS.gene045483:intron | 15.0% |
| !!! | TTGATGATTATTTTGTATTA+GGG | - | chr4.2:29871954-29871973 | MS.gene045483:intron | 15.0% |
| !!! | TTTGATGATTATTTTGTATT+AGG | - | chr4.2:29871953-29871972 | MS.gene045483:intron | 15.0% |
| !! | AACCCAATACATATAAATTA+CGG | + | chr4.2:29873338-29873357 | None:intergenic | 20.0% |
| !! | AGGAGAAATAAAAAAATAAC+TGG | - | chr4.2:29872875-29872894 | MS.gene045483:intron | 20.0% |
| !! | CAGAAAAGAAGAAAAAAAAA+TGG | + | chr4.2:29872731-29872750 | None:intergenic | 20.0% |
| !! | GGAGAAATAAAAAAATAACT+GGG | - | chr4.2:29872876-29872895 | MS.gene045483:intron | 20.0% |
| !! | TCAAATTATATAATCTGATG+GGG | + | chr4.2:29873150-29873169 | None:intergenic | 20.0% |
| !! | TGGTATAAAAAATATAATGG+TGG | + | chr4.2:29873566-29873585 | None:intergenic | 20.0% |
| !!! | ATTTTGAATTCATGATGTTT+TGG | - | chr4.2:29872510-29872529 | MS.gene045483:intron | 20.0% |
| !!! | TTCATATAGAAAATTTTGTG+TGG | - | chr4.2:29872327-29872346 | MS.gene045483:intron | 20.0% |
| !!! | TTTTGAATGAGTAGTTATAT+GGG | - | chr4.2:29872252-29872271 | MS.gene045483:intron | 20.0% |
| !!! | TTTTTGAATGAGTAGTTATA+TGG | - | chr4.2:29872251-29872270 | MS.gene045483:intron | 20.0% |
| ! | AGATTTCGAAATCAAATTGT+GGG | - | chr4.2:29872800-29872819 | MS.gene045483:intron | 25.0% |
| ! | AGCATTTACTTAATTGTTTG+TGG | - | chr4.2:29872950-29872969 | MS.gene045483:intron | 25.0% |
| ! | ATATCATGCTTAATAGATAG+AGG | - | chr4.2:29873532-29873551 | MS.gene045483:intron | 25.0% |
| ! | ATTAAGTAAATGCTAAACAG+TGG | + | chr4.2:29872944-29872963 | None:intergenic | 25.0% |
| ! | CATGTTATCAATAACAAACA+TGG | - | chr4.2:29873792-29873811 | MS.gene045483:intron | 25.0% |
| ! | CATTTACTTAATTGTTTGTG+GGG | - | chr4.2:29872952-29872971 | MS.gene045483:intron | 25.0% |
| ! | CTCCGTAATTTATATGTATT+GGG | - | chr4.2:29873333-29873352 | MS.gene045483:intron | 25.0% |
| ! | GCATTTACTTAATTGTTTGT+GGG | - | chr4.2:29872951-29872970 | MS.gene045483:intron | 25.0% |
| ! | TAGATTTCGAAATCAAATTG+TGG | - | chr4.2:29872799-29872818 | MS.gene045483:intron | 25.0% |
| ! | TCTCCGTAATTTATATGTAT+TGG | - | chr4.2:29873332-29873351 | MS.gene045483:intron | 25.0% |
| ! | TTTGAATGAGTAGTTATATG+GGG | - | chr4.2:29872253-29872272 | MS.gene045483:intron | 25.0% |
| !! | TATACCAAAATTAAAGCATC+TGG | - | chr4.2:29873579-29873598 | MS.gene045483:intron | 25.0% |
| !! | TCATGATCAAAATTTTCTCT+TGG | - | chr4.2:29873398-29873417 | MS.gene045483:intron | 25.0% |
| !!! | AATTAATTAGTTTTGGGAAG+AGG | + | chr4.2:29871798-29871817 | None:intergenic | 25.0% |
| AATAAAGCAACTGAACAATC+AGG | + | chr4.2:29873450-29873469 | None:intergenic | 30.0% | |
| CAAAATATGTTTGCATAGCT+TGG | - | chr4.2:29872615-29872634 | MS.gene045483:intron | 30.0% | |
| CAGAAAACAGGACTAAAATA+TGG | - | chr4.2:29872840-29872859 | MS.gene045483:intron | 30.0% | |
| TAAAGAACATAAAGAGACTG+AGG | + | chr4.2:29873762-29873781 | None:intergenic | 30.0% | |
| TATGAAAATACTTAAGCTGC+AGG | + | chr4.2:29872313-29872332 | None:intergenic | 30.0% | |
| TCAACTTTAAGCATGAGTTA+AGG | + | chr4.2:29873366-29873385 | None:intergenic | 30.0% | |
| TTCTACAGCATAAATTTGAG+CGG | + | chr4.2:29872564-29872583 | None:intergenic | 30.0% | |
| ! | AAAATTTTGTGTGGAACATG+TGG | - | chr4.2:29872336-29872355 | MS.gene045483:intron | 30.0% |
| ! | AAATTTTCTCTTGGCTTCAT+TGG | - | chr4.2:29873407-29873426 | MS.gene045483:intron | 30.0% |
| ! | AATTATAGGGTGGATTTGAA+TGG | - | chr4.2:29872976-29872995 | MS.gene045483:intron | 30.0% |
| !!! | AACATATTTTGAGTTGTGCT+TGG | + | chr4.2:29872606-29872625 | None:intergenic | 30.0% |
| AACATAAAGAGACTGAGGTT+GGG | + | chr4.2:29873757-29873776 | None:intergenic | 35.0% | |
| ACTGTCCTTGTAAAGTTGAA+TGG | - | chr4.2:29873268-29873287 | MS.gene045483:intron | 35.0% | |
| AGGCCATATTTCTCAAGATT+GGG | - | chr4.2:29871657-29871676 | MS.gene045483:CDS | 35.0% | |
| ATTGTTTGTGGGGCAATTAT+AGG | - | chr4.2:29872962-29872981 | MS.gene045483:intron | 35.0% | |
| CCATTGATAGAATAGAACCT+CGG | - | chr4.2:29872222-29872241 | MS.gene045483:intron | 35.0% | |
| GCTAACCATTCAACTTTACA+AGG | + | chr4.2:29873276-29873295 | None:intergenic | 35.0% | |
| GCTTGGACTAAAAATCAACA+TGG | + | chr4.2:29872589-29872608 | None:intergenic | 35.0% | |
| GTTCCCAATCTTGAGAAATA+TGG | + | chr4.2:29871663-29871682 | None:intergenic | 35.0% | |
| TAGGCCATATTTCTCAAGAT+TGG | - | chr4.2:29871656-29871675 | MS.gene045483:CDS | 35.0% | |
| TTGTTTGTGGGGCAATTATA+GGG | - | chr4.2:29872963-29872982 | MS.gene045483:intron | 35.0% | |
| ! | AAATATGGCTTGTACACTCA+AGG | - | chr4.2:29872855-29872874 | MS.gene045483:intron | 35.0% |
| ! | CATTGAAACTGTTTTCGCAA+AGG | - | chr4.2:29873030-29873049 | MS.gene045483:intron | 35.0% |
| ! | GGTTGTGTGTTTTGTGATTT+TGG | - | chr4.2:29872015-29872034 | MS.gene045483:intron | 35.0% |
| ! | GTGTGTTTTGTGATTTTGGA+TGG | - | chr4.2:29872019-29872038 | MS.gene045483:intron | 35.0% |
| ! | TGATTTTGGATGGTGATTGT+TGG | - | chr4.2:29872029-29872048 | MS.gene045483:intron | 35.0% |
| ! | TTGCTAATTATCTGCTGGTT+TGG | + | chr4.2:29873882-29873901 | None:intergenic | 35.0% |
| !! | AATTATCTGCTGGTTTGGAA+TGG | + | chr4.2:29873877-29873896 | None:intergenic | 35.0% |
| !! | CTTTAAGCACTGCTAACTTT+TGG | - | chr4.2:29872450-29872469 | MS.gene045483:intron | 35.0% |
| !! | TGCACCAGATGCTTTAATTT+TGG | + | chr4.2:29873586-29873605 | None:intergenic | 35.0% |
| !! | TTTCTTGACGGTATCGATAT+CGG | + | chr4.2:29871767-29871786 | None:intergenic | 35.0% |
| ACATAAAGAGACTGAGGTTG+GGG | + | chr4.2:29873756-29873775 | None:intergenic | 40.0% | |
| AGAAGGCTATAATGCAAGCT+AGG | - | chr4.2:29873680-29873699 | MS.gene045483:intron | 40.0% | |
| AGAGAGAGCGATCACATAAT+GGG | + | chr4.2:29873185-29873204 | None:intergenic | 40.0% | |
| ATAGCCTTCTTGAGTTCAGT+TGG | + | chr4.2:29873670-29873689 | None:intergenic | 40.0% | |
| ATGTTTGCATAGCTTGGACA+TGG | - | chr4.2:29872621-29872640 | MS.gene045483:intron | 40.0% | |
| CCAGCAGATAATTAGCAAGT+TGG | - | chr4.2:29873884-29873903 | MS.gene045483:CDS | 40.0% | |
| CCGAGGTTCTATTCTATCAA+TGG | + | chr4.2:29872225-29872244 | None:intergenic | 40.0% | |
| CGTATTGCGATTGTTGTAGT+TGG | - | chr4.2:29871846-29871865 | MS.gene045483:intron | 40.0% | |
| GAACATAAAGAGACTGAGGT+TGG | + | chr4.2:29873758-29873777 | None:intergenic | 40.0% | |
| GCACTTCATTGAACACTAAG+AGG | - | chr4.2:29872105-29872124 | MS.gene045483:intron | 40.0% | |
| GTTATATGGGGAGAATGATG+AGG | - | chr4.2:29872265-29872284 | MS.gene045483:intron | 40.0% | |
| TCAAATTGTGGGTCAAGTTC+CGG | - | chr4.2:29872811-29872830 | MS.gene045483:intron | 40.0% | |
| TCATACTCTTGGATCACTTG+AGG | + | chr4.2:29873843-29873862 | None:intergenic | 40.0% | |
| TCATTCAAAAATCGACACCG+AGG | + | chr4.2:29872242-29872261 | None:intergenic | 40.0% | |
| TCTGTTGACAATCACATGAC+TGG | - | chr4.2:29873619-29873638 | MS.gene045483:intron | 40.0% | |
| TGTACCAACTGAACTCAAGA+AGG | - | chr4.2:29873663-29873682 | MS.gene045483:intron | 40.0% | |
| TGTATTGGAAGTCCATCTAG+CGG | - | chr4.2:29873073-29873092 | MS.gene045483:intron | 40.0% | |
| TGTTTGCATAGCTTGGACAT+GGG | - | chr4.2:29872622-29872641 | MS.gene045483:intron | 40.0% | |
| TTCATTGAACACTAAGAGGC+TGG | - | chr4.2:29872109-29872128 | MS.gene045483:intron | 40.0% | |
| TTTGTGTGGAACATGTGGTT+TGG | - | chr4.2:29872341-29872360 | MS.gene045483:intron | 40.0% | |
| ! | TCTTGCTGTGTGTGTAATTG+TGG | - | chr4.2:29873210-29873229 | MS.gene045483:intron | 40.0% |
| ! | TGATCCAAGAGTATGAGTCA+GGG | - | chr4.2:29873847-29873866 | MS.gene045483:CDS | 40.0% |
| !! | ACACAGCATGCTTTGGAATT+TGG | - | chr4.2:29873490-29873509 | MS.gene045483:CDS | 40.0% |
| !! | CCAACTTGCTAATTATCTGC+TGG | + | chr4.2:29873887-29873906 | None:intergenic | 40.0% |
| ATAAAGAGACTGAGGTTGGG+GGG | + | chr4.2:29873754-29873773 | None:intergenic | 45.0% | |
| ATTGTGCACACAGCATGCTT+TGG | - | chr4.2:29873483-29873502 | MS.gene045483:CDS | 45.0% | |
| CAATACAAGCCTTAGAGCCA+AGG | + | chr4.2:29873060-29873079 | None:intergenic | 45.0% | |
| CAATGCATGAATCCGCTAGA+TGG | + | chr4.2:29873088-29873107 | None:intergenic | 45.0% | |
| CATAAAGAGACTGAGGTTGG+GGG | + | chr4.2:29873755-29873774 | None:intergenic | 45.0% | |
| CGTTACCTACTAGAGGACAT+TGG | + | chr4.2:29872662-29872681 | None:intergenic | 45.0% | |
| CTTTCCCTGACTCATACTCT+TGG | + | chr4.2:29873854-29873873 | None:intergenic | 45.0% | |
| GACGGCTTTCTCATCTTTCT+TGG | + | chr4.2:29871722-29871741 | None:intergenic | 45.0% | |
| GAGAGAGAGCGATCACATAA+TGG | + | chr4.2:29873186-29873205 | None:intergenic | 45.0% | |
| GAGAGAGCGATCACATAATG+GGG | + | chr4.2:29873184-29873203 | None:intergenic | 45.0% | |
| GGCTATAATGCAAGCTAGGA+TGG | - | chr4.2:29873684-29873703 | MS.gene045483:intron | 45.0% | |
| GGCTTTCTCATCTTTCTTGG+CGG | + | chr4.2:29871719-29871738 | None:intergenic | 45.0% | |
| GTGATTGTCAACAGATGTGC+AGG | + | chr4.2:29873614-29873633 | None:intergenic | 45.0% | |
| TGTCCTCTAGTAGGTAACGA+CGG | - | chr4.2:29872663-29872682 | MS.gene045483:intron | 45.0% | |
| TTCCGGATCATGCAGAAAAC+AGG | - | chr4.2:29872828-29872847 | MS.gene045483:intron | 45.0% | |
| TTGGTCCAATGTCCTCTAGT+AGG | - | chr4.2:29872654-29872673 | MS.gene045483:intron | 45.0% | |
| TTTCTCATCTTTCTTGGCGG+CGG | + | chr4.2:29871716-29871735 | None:intergenic | 45.0% | |
| TTTGTGGGGCAATTATAGGG+TGG | - | chr4.2:29872966-29872985 | MS.gene045483:intron | 45.0% | |
| ! | GTCCTGTTTTCTGCATGATC+CGG | + | chr4.2:29872833-29872852 | None:intergenic | 45.0% |
| ! | GTGATCCAAGAGTATGAGTC+AGG | - | chr4.2:29873846-29873865 | MS.gene045483:CDS | 45.0% |
| ! | GTTTTCGCAAAGGAAAGCCT+TGG | - | chr4.2:29873040-29873059 | MS.gene045483:intron | 45.0% |
| !! | AAAGGAAAGCCTTGGCTCTA+AGG | - | chr4.2:29873048-29873067 | MS.gene045483:intron | 45.0% |
| !! | CTTGGCTCTAAGGCTTGTAT+TGG | - | chr4.2:29873058-29873077 | MS.gene045483:intron | 45.0% |
| !! | TGTCTACTGACTCTTGCAAC+TGG | - | chr4.2:29872376-29872395 | MS.gene045483:intron | 45.0% |
| AGTCCGTCGTTACCTACTAG+AGG | + | chr4.2:29872669-29872688 | None:intergenic | 50.0% | |
| GAACACTAAGAGGCTGGATG+AGG | - | chr4.2:29872115-29872134 | MS.gene045483:intron | 50.0% | |
| GAGGAGCGAACGTTTCTTGA+CGG | + | chr4.2:29871779-29871798 | None:intergenic | 50.0% | |
| ! | TGGACATGGGAGTGTGATCT+TGG | - | chr4.2:29872635-29872654 | MS.gene045483:intron | 50.0% |
| GCTTTCTTGCGGATGACGAC+TGG | + | chr4.2:29871685-29871704 | None:intergenic | 55.0% | |
| ! | AGCAAGTTGGAGAGAGCCCT+TGG | - | chr4.2:29873897-29873916 | MS.gene045483:CDS | 55.0% |
| ! | GCCACGCAGTTTAGCTCCAA+GGG | + | chr4.2:29873916-29873935 | None:intergenic | 55.0% |
| ! | TGCCACGCAGTTTAGCTCCA+AGG | + | chr4.2:29873917-29873936 | None:intergenic | 55.0% |
| ATCTTTCTTGGCGGCGGCGT+TGG | + | chr4.2:29871710-29871729 | None:intergenic | 60.0% | |
| GCCCTTGGAGCTAAACTGCG+TGG | - | chr4.2:29873912-29873931 | MS.gene045483:CDS | 60.0% | |
| TCTTTCTTGGCGGCGGCGTT+GGG | + | chr4.2:29871709-29871728 | None:intergenic | 60.0% | |
| ! | CGGCGTTGGGAGCTTTCTTG+CGG | + | chr4.2:29871696-29871715 | None:intergenic | 60.0% |
| !! | GACGGTATCGATATCGGCGC+CGG | + | chr4.2:29871761-29871780 | None:intergenic | 60.0% |
| !! | TATCGATATCGGCGCCGGCA+CGG | + | chr4.2:29871756-29871775 | None:intergenic | 60.0% |
| GTCAACGCCGCTCGCCGTGC+CGG | - | chr4.2:29871739-29871758 | MS.gene045483:CDS | 75.0% | |
| ! | GGCACGGCGAGCGGCGTTGA+CGG | + | chr4.2:29871740-29871759 | None:intergenic | 75.0% |
| !!! | ATCGGCGCCGGCACGGCGAG+CGG | + | chr4.2:29871749-29871768 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 29871646 | 29873944 | 29871646 | ID=MS.gene045483 |
| chr4.2 | mRNA | 29871646 | 29873944 | 29871646 | ID=MS.gene045483.t1;Parent=MS.gene045483 |
| chr4.2 | exon | 29873803 | 29873944 | 29873803 | ID=MS.gene045483.t1.exon1;Parent=MS.gene045483.t1 |
| chr4.2 | CDS | 29873803 | 29873944 | 29873803 | ID=cds.MS.gene045483.t1;Parent=MS.gene045483.t1 |
| chr4.2 | exon | 29873435 | 29873518 | 29873435 | ID=MS.gene045483.t1.exon2;Parent=MS.gene045483.t1 |
| chr4.2 | CDS | 29873435 | 29873518 | 29873435 | ID=cds.MS.gene045483.t1;Parent=MS.gene045483.t1 |
| chr4.2 | exon | 29871852 | 29871934 | 29871852 | ID=MS.gene045483.t1.exon3;Parent=MS.gene045483.t1 |
| chr4.2 | CDS | 29871852 | 29871934 | 29871852 | ID=cds.MS.gene045483.t1;Parent=MS.gene045483.t1 |
| chr4.2 | exon | 29871646 | 29871765 | 29871646 | ID=MS.gene045483.t1.exon4;Parent=MS.gene045483.t1 |
| chr4.2 | CDS | 29871646 | 29871765 | 29871646 | ID=cds.MS.gene045483.t1;Parent=MS.gene045483.t1 |
| Gene Sequence |
| Protein sequence |
