AlfalfaGEDB | MS.gene73865

M. sativa cultivar XinJiangDaYe / MS.gene73865

KEGG: K03627
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF01381.25 PF08523.13

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73865.t1	XP_003607599.1	100	142	0	0	1	142	1	142	9.90E-67	262.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73865.t1	Q9LXT3	84.5	142	22	0	1	142	1	142	5.0e-59	228.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73865.t1	B7FGN1	100.0	142	0	0	1	142	1	142	7.2e-67	262.7

TFs/TRs:

Gene ID	Type	Classification
MS.gene73865.t1	TR	MBF1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene73865	MS.gene35285	PPI
MS.gene35285	MS.gene73865	PPI
MS.gene073154	MS.gene73865	PPI
MS.gene042957	MS.gene73865	PPI
MS.gene05524	MS.gene73865	PPI
MS.gene052439	MS.gene73865	PPI
MS.gene91241	MS.gene73865	PPI
MS.gene61422	MS.gene73865	PPI
MS.gene006697	MS.gene73865	PPI
MS.gene73865	MS.gene61422	PPI
MS.gene94585	MS.gene73865	PPI
MS.gene045483	MS.gene73865	PPI
MS.gene51432	MS.gene73865	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73865.t1	MTR_4g080090	100.000	142	0	0	1	142	1	142	6.96e-101	285
MS.gene73865.t1	MTR_2g084220	91.304	138	12	0	5	142	3	140	3.37e-89	256
MS.gene73865.t1	MTR_6g018330	68.085	141	29	1	2	142	19	143	2.10e-58	178
MS.gene73865.t1	MTR_6g086280	52.174	138	66	0	4	141	9	146	2.07e-45	145
MS.gene73865.t1	MTR_6g086280	52.174	138	66	0	4	141	9	146	2.53e-45	145
MS.gene73865.t1	MTR_1g047000	90.244	41	4	0	102	142	16	56	6.14e-20	77.8
MS.gene73865.t1	MTR_7g117675	90.000	40	4	0	92	131	1	40	7.61e-19	75.5
MS.gene73865.t1	MTR_4g103930	55.844	77	21	1	32	95	45	121	7.74e-18	75.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73865.t1	AT3G58680	84.507	142	22	0	1	142	1	142	1.27e-86	249
MS.gene73865.t1	AT2G42680	85.915	142	20	0	1	142	1	142	1.70e-86	249
MS.gene73865.t1	AT3G24500	50.360	139	67	1	5	141	7	145	1.05e-43	141
MS.gene73865.t1	AT3G24500	43.820	89	48	1	5	91	7	95	4.69e-17	71.6

Find 38 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACGGCTTTCTCATCTTTCT+TGG	0.250063	4.2:-29961236	None:intergenic
ATCTTTCTTGGCGGCGGCGT+TGG	0.250269	4.2:-29961224	None:intergenic
TTGCTAATTATCTGCTGGTT+TGG	0.292459	4.2:-29963396	None:intergenic
GTTCCCAATCTTGAGAAATA+TGG	0.320777	4.2:-29961177	None:intergenic
TTTCTTGACGGTATCGATAT+CGG	0.338092	4.2:-29961281	None:intergenic
TCTTTCTTGGCGGCGGCGTT+GGG	0.340591	4.2:-29961223	None:intergenic
GGCACGGCGAGCGGCGTTGA+CGG	0.351560	4.2:-29961254	None:intergenic
GTCAACGCCGCTCGCCGTGC+CGG	0.353656	4.2:+29961256	MS.gene73865:CDS
TAGGCCATATTTCTCAAGAT+TGG	0.393130	4.2:+29961173	MS.gene73865:CDS
AGCAAGTTGGAGAGAGCCCT+TGG	0.404653	4.2:+29963414	MS.gene73865:CDS
CCAACTTGCTAATTATCTGC+TGG	0.425113	4.2:-29963401	None:intergenic
AGGCCATATTTCTCAAGATT+GGG	0.431239	4.2:+29961174	MS.gene73865:CDS
GTGATCCAAGAGTATGAGTC+AGG	0.431295	4.2:+29963363	MS.gene73865:CDS
CTTTCCCTGACTCATACTCT+TGG	0.439242	4.2:-29963368	None:intergenic
ATCGGCGCCGGCACGGCGAG+CGG	0.444792	4.2:-29961263	None:intergenic
GCTTTCTTGCGGATGACGAC+TGG	0.447489	4.2:-29961199	None:intergenic
GAGATAAATATGTCAGGTCT+AGG	0.459208	4.2:+29961154	None:intergenic
AATTATCTGCTGGTTTGGAA+TGG	0.474147	4.2:-29963391	None:intergenic
GCACTTCATTGAACACTAAG+AGG	0.487095	4.2:+29961622	MS.gene73865:CDS
GGCTATAATGCAAGCTAGGA+TGG	0.493126	4.2:+29963201	MS.gene73865:CDS
TTCATTGAACACTAAGAGGC+TGG	0.503842	4.2:+29961626	MS.gene73865:CDS
TGCCACGCAGTTTAGCTCCA+AGG	0.505877	4.2:-29963431	None:intergenic
AACAAAGAGATAAATATGTC+AGG	0.505887	4.2:+29961148	None:intergenic
CCAGCAGATAATTAGCAAGT+TGG	0.509376	4.2:+29963401	MS.gene73865:CDS
ATAGCCTTCTTGAGTTCAGT+TGG	0.514235	4.2:-29963184	None:intergenic
AGAAGGCTATAATGCAAGCT+AGG	0.515044	4.2:+29963197	MS.gene73865:CDS
GAGGAGCGAACGTTTCTTGA+CGG	0.526730	4.2:-29961293	None:intergenic
CGGCGTTGGGAGCTTTCTTG+CGG	0.528475	4.2:-29961210	None:intergenic
GCCACGCAGTTTAGCTCCAA+GGG	0.531362	4.2:-29963430	None:intergenic
GGCTTTCTCATCTTTCTTGG+CGG	0.532271	4.2:-29961233	None:intergenic
GAACACTAAGAGGCTGGATG+AGG	0.556069	4.2:+29961632	MS.gene73865:CDS
GACGGTATCGATATCGGCGC+CGG	0.571328	4.2:-29961275	None:intergenic
TTTCTCATCTTTCTTGGCGG+CGG	0.585231	4.2:-29961230	None:intergenic
TGTACCAACTGAACTCAAGA+AGG	0.594355	4.2:+29963180	MS.gene73865:CDS
TCATACTCTTGGATCACTTG+AGG	0.607504	4.2:-29963357	None:intergenic
TATCGATATCGGCGCCGGCA+CGG	0.624694	4.2:-29961270	None:intergenic
TGATCCAAGAGTATGAGTCA+GGG	0.648267	4.2:+29963364	MS.gene73865:CDS
GCCCTTGGAGCTAAACTGCG+TGG	0.653713	4.2:+29963429	MS.gene73865:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAACATTAATTAATTAGTTT+TGG	-	chr4.2:29961322-29961341	None:intergenic	10.0%
!!!	AACATTAATTAATTAGTTTT+GGG	-	chr4.2:29961321-29961340	None:intergenic	10.0%
!!!	TTTTGGTATAAAAAATATAA+TGG	-	chr4.2:29963086-29963105	None:intergenic	10.0%
!!	TAATTTCAATATATTGATCA+TGG	+	chr4.2:29961511-29961530	MS.gene73865:intron	15.0%
!!	TTCAAATTATATAATCTGAT+GGG	-	chr4.2:29962668-29962687	None:intergenic	15.0%
!!	TTTCAAATTATATAATCTGA+TGG	-	chr4.2:29962669-29962688	None:intergenic	15.0%
!!!	TTAATGTTTTTTTTAACTCT+TGG	+	chr4.2:29961333-29961352	MS.gene73865:intron	15.0%
!!!	TTCGTAGATAAAAATAATTT+TGG	+	chr4.2:29961446-29961465	MS.gene73865:intron	15.0%
!!!	TTGATGATTATTTTGTATTA+GGG	+	chr4.2:29961471-29961490	MS.gene73865:intron	15.0%
!!!	TTTGATGATTATTTTGTATT+AGG	+	chr4.2:29961470-29961489	MS.gene73865:intron	15.0%
!!	AACCCAATACATATAAATTA+CGG	-	chr4.2:29962855-29962874	None:intergenic	20.0%
!!	AGGAGAAATAAAAAAATAAC+TGG	+	chr4.2:29962392-29962411	MS.gene73865:intron	20.0%
!!	CAGAAAAGAAGAAAAAAAAA+TGG	-	chr4.2:29962248-29962267	None:intergenic	20.0%
!!	GGAGAAATAAAAAAATAACT+GGG	+	chr4.2:29962393-29962412	MS.gene73865:intron	20.0%
!!	TCAAATTATATAATCTGATG+GGG	-	chr4.2:29962667-29962686	None:intergenic	20.0%
!!	TGGTATAAAAAATATAATGG+TGG	-	chr4.2:29963083-29963102	None:intergenic	20.0%
!!!	ATTTTGAATTCATGATGTTT+TGG	+	chr4.2:29962027-29962046	MS.gene73865:intron	20.0%
!!!	TTCATATAGAAAATTTTGTG+TGG	+	chr4.2:29961844-29961863	MS.gene73865:intron	20.0%
!!!	TTTTGAATGAGTAGTTATAT+GGG	+	chr4.2:29961769-29961788	MS.gene73865:intron	20.0%
!!!	TTTTTGAATGAGTAGTTATA+TGG	+	chr4.2:29961768-29961787	MS.gene73865:intron	20.0%
!	AGATTTCGAAATCAAATTGT+GGG	+	chr4.2:29962317-29962336	MS.gene73865:intron	25.0%
!	AGCATTTACTTAATTGTTTG+TGG	+	chr4.2:29962467-29962486	MS.gene73865:intron	25.0%
!	ATATCATGCTTAATAGATAG+AGG	+	chr4.2:29963049-29963068	MS.gene73865:intron	25.0%
!	ATTAAGTAAATGCTAAACAG+TGG	-	chr4.2:29962461-29962480	None:intergenic	25.0%
!	CATGTTATCAATAACAAACA+TGG	+	chr4.2:29963309-29963328	MS.gene73865:intron	25.0%
!	CATTTACTTAATTGTTTGTG+GGG	+	chr4.2:29962469-29962488	MS.gene73865:intron	25.0%
!	CTCCGTAATTTATATGTATT+GGG	+	chr4.2:29962850-29962869	MS.gene73865:intron	25.0%
!	GCATTTACTTAATTGTTTGT+GGG	+	chr4.2:29962468-29962487	MS.gene73865:intron	25.0%
!	TAGATTTCGAAATCAAATTG+TGG	+	chr4.2:29962316-29962335	MS.gene73865:intron	25.0%
!	TCTCCGTAATTTATATGTAT+TGG	+	chr4.2:29962849-29962868	MS.gene73865:intron	25.0%
!	TTTGAATGAGTAGTTATATG+GGG	+	chr4.2:29961770-29961789	MS.gene73865:intron	25.0%
!!	TATACCAAAATTAAAGCATC+TGG	+	chr4.2:29963096-29963115	MS.gene73865:intron	25.0%
!!	TCATGATCAAAATTTTCTCT+TGG	+	chr4.2:29962915-29962934	MS.gene73865:intron	25.0%
!!!	AATTAATTAGTTTTGGGAAG+AGG	-	chr4.2:29961315-29961334	None:intergenic	25.0%
	AATAAAGCAACTGAACAATC+AGG	-	chr4.2:29962967-29962986	None:intergenic	30.0%
	CAAAATATGTTTGCATAGCT+TGG	+	chr4.2:29962132-29962151	MS.gene73865:intron	30.0%
	CAGAAAACAGGACTAAAATA+TGG	+	chr4.2:29962357-29962376	MS.gene73865:intron	30.0%
	TAAAGAACATAAAGAGACTG+AGG	-	chr4.2:29963279-29963298	None:intergenic	30.0%
	TATGAAAATACTTAAGCTGC+AGG	-	chr4.2:29961830-29961849	None:intergenic	30.0%
	TCAACTTTAAGCATGAGTTA+AGG	-	chr4.2:29962883-29962902	None:intergenic	30.0%
	TTCTACAGCATAAATTTGAG+CGG	-	chr4.2:29962081-29962100	None:intergenic	30.0%
!	AAAATTTTGTGTGGAACATG+TGG	+	chr4.2:29961853-29961872	MS.gene73865:intron	30.0%
!	AAATTTTCTCTTGGCTTCAT+TGG	+	chr4.2:29962924-29962943	MS.gene73865:intron	30.0%
!	AATTATAGGGTGGATTTGAA+TGG	+	chr4.2:29962493-29962512	MS.gene73865:intron	30.0%
!!!	AACATATTTTGAGTTGTGCT+TGG	-	chr4.2:29962123-29962142	None:intergenic	30.0%
	AACATAAAGAGACTGAGGTT+GGG	-	chr4.2:29963274-29963293	None:intergenic	35.0%
	ACTGTCCTTGTAAAGTTGAA+TGG	+	chr4.2:29962785-29962804	MS.gene73865:intron	35.0%
	AGGCCATATTTCTCAAGATT+GGG	+	chr4.2:29961174-29961193	MS.gene73865:CDS	35.0%
	ATTGTTTGTGGGGCAATTAT+AGG	+	chr4.2:29962479-29962498	MS.gene73865:intron	35.0%
	CCATTGATAGAATAGAACCT+CGG	+	chr4.2:29961739-29961758	MS.gene73865:intron	35.0%
	GCTAACCATTCAACTTTACA+AGG	-	chr4.2:29962793-29962812	None:intergenic	35.0%
	GCTTGGACTAAAAATCAACA+TGG	-	chr4.2:29962106-29962125	None:intergenic	35.0%
	GTTCCCAATCTTGAGAAATA+TGG	-	chr4.2:29961180-29961199	None:intergenic	35.0%
	TAGGCCATATTTCTCAAGAT+TGG	+	chr4.2:29961173-29961192	MS.gene73865:CDS	35.0%
	TTGTTTGTGGGGCAATTATA+GGG	+	chr4.2:29962480-29962499	MS.gene73865:intron	35.0%
!	AAATATGGCTTGTACACTCA+AGG	+	chr4.2:29962372-29962391	MS.gene73865:intron	35.0%
!	CATTGAAACTGTTTTCGCAA+AGG	+	chr4.2:29962547-29962566	MS.gene73865:intron	35.0%
!	GGTTGTGTGTTTTGTGATTT+TGG	+	chr4.2:29961532-29961551	MS.gene73865:intron	35.0%
!	GTGTGTTTTGTGATTTTGGA+TGG	+	chr4.2:29961536-29961555	MS.gene73865:intron	35.0%
!	TGATTTTGGATGGTGATTGT+TGG	+	chr4.2:29961546-29961565	MS.gene73865:intron	35.0%
!	TTGCTAATTATCTGCTGGTT+TGG	-	chr4.2:29963399-29963418	None:intergenic	35.0%
!!	AATTATCTGCTGGTTTGGAA+TGG	-	chr4.2:29963394-29963413	None:intergenic	35.0%
!!	CTTTAAGCACTGCTAACTTT+TGG	+	chr4.2:29961967-29961986	MS.gene73865:intron	35.0%
!!	TGCACCAGATGCTTTAATTT+TGG	-	chr4.2:29963103-29963122	None:intergenic	35.0%
!!	TTTCTTGACGGTATCGATAT+CGG	-	chr4.2:29961284-29961303	None:intergenic	35.0%
	ACATAAAGAGACTGAGGTTG+GGG	-	chr4.2:29963273-29963292	None:intergenic	40.0%
	AGAAGGCTATAATGCAAGCT+AGG	+	chr4.2:29963197-29963216	MS.gene73865:CDS	40.0%
	AGAGAGAGCGATCACATAAT+GGG	-	chr4.2:29962702-29962721	None:intergenic	40.0%
	ATAGCCTTCTTGAGTTCAGT+TGG	-	chr4.2:29963187-29963206	None:intergenic	40.0%
	ATGTTTGCATAGCTTGGACA+TGG	+	chr4.2:29962138-29962157	MS.gene73865:intron	40.0%
	CCAGCAGATAATTAGCAAGT+TGG	+	chr4.2:29963401-29963420	MS.gene73865:CDS	40.0%
	CCGAGGTTCTATTCTATCAA+TGG	-	chr4.2:29961742-29961761	None:intergenic	40.0%
	CGTATTGCGATTGTTGTAGT+TGG	+	chr4.2:29961363-29961382	MS.gene73865:intron	40.0%
	GAACATAAAGAGACTGAGGT+TGG	-	chr4.2:29963275-29963294	None:intergenic	40.0%
	GCACTTCATTGAACACTAAG+AGG	+	chr4.2:29961622-29961641	MS.gene73865:CDS	40.0%
	GTTATATGGGGAGAATGATG+AGG	+	chr4.2:29961782-29961801	MS.gene73865:intron	40.0%
	TCAAATTGTGGGTCAAGTTC+CGG	+	chr4.2:29962328-29962347	MS.gene73865:intron	40.0%
	TCATACTCTTGGATCACTTG+AGG	-	chr4.2:29963360-29963379	None:intergenic	40.0%
	TCATTCAAAAATCGACACCG+AGG	-	chr4.2:29961759-29961778	None:intergenic	40.0%
	TCTGTTGACAATCACATGAC+TGG	+	chr4.2:29963136-29963155	MS.gene73865:intron	40.0%
	TGTACCAACTGAACTCAAGA+AGG	+	chr4.2:29963180-29963199	MS.gene73865:CDS	40.0%
	TGTATTGGAAGTCCATCTAG+CGG	+	chr4.2:29962590-29962609	MS.gene73865:intron	40.0%
	TGTTTGCATAGCTTGGACAT+GGG	+	chr4.2:29962139-29962158	MS.gene73865:intron	40.0%
	TTCATTGAACACTAAGAGGC+TGG	+	chr4.2:29961626-29961645	MS.gene73865:CDS	40.0%
	TTTGTGTGGAACATGTGGTT+TGG	+	chr4.2:29961858-29961877	MS.gene73865:intron	40.0%
!	TCTTGCTGTGTGTGTAATTG+TGG	+	chr4.2:29962727-29962746	MS.gene73865:intron	40.0%
!	TGATCCAAGAGTATGAGTCA+GGG	+	chr4.2:29963364-29963383	MS.gene73865:CDS	40.0%
!!	ACACAGCATGCTTTGGAATT+TGG	+	chr4.2:29963007-29963026	MS.gene73865:intron	40.0%
!!	CCAACTTGCTAATTATCTGC+TGG	-	chr4.2:29963404-29963423	None:intergenic	40.0%
	ATAAAGAGACTGAGGTTGGG+GGG	-	chr4.2:29963271-29963290	None:intergenic	45.0%
	ATTGTGCACACAGCATGCTT+TGG	+	chr4.2:29963000-29963019	MS.gene73865:intron	45.0%
	CAATACAAGCCTTAGAGCCA+AGG	-	chr4.2:29962577-29962596	None:intergenic	45.0%
	CAATGCATGAATCCGCTAGA+TGG	-	chr4.2:29962605-29962624	None:intergenic	45.0%
	CATAAAGAGACTGAGGTTGG+GGG	-	chr4.2:29963272-29963291	None:intergenic	45.0%
	CGTTACCTACTAGAGGACAT+TGG	-	chr4.2:29962179-29962198	None:intergenic	45.0%
	CTTTCCCTGACTCATACTCT+TGG	-	chr4.2:29963371-29963390	None:intergenic	45.0%
	GACGGCTTTCTCATCTTTCT+TGG	-	chr4.2:29961239-29961258	None:intergenic	45.0%
	GAGAGAGAGCGATCACATAA+TGG	-	chr4.2:29962703-29962722	None:intergenic	45.0%
	GAGAGAGCGATCACATAATG+GGG	-	chr4.2:29962701-29962720	None:intergenic	45.0%
	GGCTATAATGCAAGCTAGGA+TGG	+	chr4.2:29963201-29963220	MS.gene73865:CDS	45.0%
	GGCTTTCTCATCTTTCTTGG+CGG	-	chr4.2:29961236-29961255	None:intergenic	45.0%
	GTGATTGTCAACAGATGTGC+AGG	-	chr4.2:29963131-29963150	None:intergenic	45.0%
	TGTCCTCTAGTAGGTAACGA+CGG	+	chr4.2:29962180-29962199	MS.gene73865:intron	45.0%
	TTCCGGATCATGCAGAAAAC+AGG	+	chr4.2:29962345-29962364	MS.gene73865:intron	45.0%
	TTGGTCCAATGTCCTCTAGT+AGG	+	chr4.2:29962171-29962190	MS.gene73865:intron	45.0%
	TTTCTCATCTTTCTTGGCGG+CGG	-	chr4.2:29961233-29961252	None:intergenic	45.0%
	TTTGTGGGGCAATTATAGGG+TGG	+	chr4.2:29962483-29962502	MS.gene73865:intron	45.0%
!	GTCCTGTTTTCTGCATGATC+CGG	-	chr4.2:29962350-29962369	None:intergenic	45.0%
!	GTGATCCAAGAGTATGAGTC+AGG	+	chr4.2:29963363-29963382	MS.gene73865:CDS	45.0%
!	GTTTTCGCAAAGGAAAGCCT+TGG	+	chr4.2:29962557-29962576	MS.gene73865:intron	45.0%
!!	AAAGGAAAGCCTTGGCTCTA+AGG	+	chr4.2:29962565-29962584	MS.gene73865:intron	45.0%
!!	CTTGGCTCTAAGGCTTGTAT+TGG	+	chr4.2:29962575-29962594	MS.gene73865:intron	45.0%
!!	TGTCTACTGACTCTTGCAAC+TGG	+	chr4.2:29961893-29961912	MS.gene73865:intron	45.0%
	AGTCCGTCGTTACCTACTAG+AGG	-	chr4.2:29962186-29962205	None:intergenic	50.0%
	GAACACTAAGAGGCTGGATG+AGG	+	chr4.2:29961632-29961651	MS.gene73865:CDS	50.0%
	GAGGAGCGAACGTTTCTTGA+CGG	-	chr4.2:29961296-29961315	None:intergenic	50.0%
!	TGGACATGGGAGTGTGATCT+TGG	+	chr4.2:29962152-29962171	MS.gene73865:intron	50.0%
	GCTTTCTTGCGGATGACGAC+TGG	-	chr4.2:29961202-29961221	None:intergenic	55.0%
!	AGCAAGTTGGAGAGAGCCCT+TGG	+	chr4.2:29963414-29963433	MS.gene73865:CDS	55.0%
!	GCCACGCAGTTTAGCTCCAA+GGG	-	chr4.2:29963433-29963452	None:intergenic	55.0%
!	TGCCACGCAGTTTAGCTCCA+AGG	-	chr4.2:29963434-29963453	None:intergenic	55.0%
	ATCTTTCTTGGCGGCGGCGT+TGG	-	chr4.2:29961227-29961246	None:intergenic	60.0%
	GCCCTTGGAGCTAAACTGCG+TGG	+	chr4.2:29963429-29963448	MS.gene73865:CDS	60.0%
	TCTTTCTTGGCGGCGGCGTT+GGG	-	chr4.2:29961226-29961245	None:intergenic	60.0%
!	CGGCGTTGGGAGCTTTCTTG+CGG	-	chr4.2:29961213-29961232	None:intergenic	60.0%
!!	GACGGTATCGATATCGGCGC+CGG	-	chr4.2:29961278-29961297	None:intergenic	60.0%
!!	TATCGATATCGGCGCCGGCA+CGG	-	chr4.2:29961273-29961292	None:intergenic	60.0%
	GTCAACGCCGCTCGCCGTGC+CGG	+	chr4.2:29961256-29961275	MS.gene73865:CDS	75.0%
!	GGCACGGCGAGCGGCGTTGA+CGG	-	chr4.2:29961257-29961276	None:intergenic	75.0%
!!!	ATCGGCGCCGGCACGGCGAG+CGG	-	chr4.2:29961266-29961285	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	29961163	29963461	29961163	ID=MS.gene73865
chr4.2	mRNA	29961163	29963461	29961163	ID=MS.gene73865.t1;Parent=MS.gene73865
chr4.2	exon	29961163	29961304	29961163	ID=MS.gene73865.t1.exon1;Parent=MS.gene73865.t1
chr4.2	CDS	29961163	29961304	29961163	ID=cds.MS.gene73865.t1;Parent=MS.gene73865.t1
chr4.2	exon	29961589	29961672	29961589	ID=MS.gene73865.t1.exon2;Parent=MS.gene73865.t1
chr4.2	CDS	29961589	29961672	29961589	ID=cds.MS.gene73865.t1;Parent=MS.gene73865.t1
chr4.2	exon	29963173	29963255	29963173	ID=MS.gene73865.t1.exon3;Parent=MS.gene73865.t1
chr4.2	CDS	29963173	29963255	29963173	ID=cds.MS.gene73865.t1;Parent=MS.gene73865.t1
chr4.2	exon	29963342	29963461	29963342	ID=MS.gene73865.t1.exon4;Parent=MS.gene73865.t1
chr4.2	CDS	29963342	29963461	29963342	ID=cds.MS.gene73865.t1;Parent=MS.gene73865.t1

Gene Sequence

>MS.gene73865

ATGTCAGGTCTAGGCCATATTTCTCAAGATTGGGAACCAGTCGTCATCCGCAAGAAAGCTCCCAACGCCGCCGCCAAGAAAGATGAGAAAGCCGTCAACGCCGCTCGCCGTGCCGGCGCCGATATCGATACCGTCAAGAAACGTTCGCTCCTCTTCCCAAAACTAATTAATTAATGTTTTTTTTAACTCTTGGATCTGAACGTATTGCGATTGTTGTAGTTGGCTATGATGATTTTGTGTTGTTGAAGCAGATTTATTTAATTTGAAAATTAAATCTTTTAAATTCGTAGATAAAAATAATTTTGGTTTTGATGATTATTTTGTATTAGGGTACTTAAAACAACAGTTTAATTTCAATATATTGATCATGGTTGTGTGTTTTGTGATTTTGGATGGTGATTGTTGGTTGAATTGTTGTGTTTACAGATAATGCTGCAACAAACAAAGCTGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGAGGATACTGAGAATCTAGCTCGTGAGTATTGCTTGCACGTATAGATAGATATATACTAGTTTGTTGTTTATTTGTTTTTTTTTTTAACCATTGATAGAATAGAACCTCGGTGTCGATTTTTGAATGAGTAGTTATATGGGGAGAATGATGAGGTGAGTTATCTAGACAATGTTGTCCTGCAGCTTAAGTATTTTCATATAGAAAATTTTGTGTGGAACATGTGGTTTGGTAGTTATGTTTTTGTCTACTGACTCTTGCAACTGGACTGAGTCGTATACTAGAGTGTTTATGTTGAATTGAAAAATATGTATTGAGCTTTAAGCACTGCTAACTTTTGGAGTATTTGAAGTCATGTGTCTAGAAGTGTTGCTATACATTTTGAATTCATGATGTTTTGGTAGTATGTTTATTTCTTGTTTGATTTTACCGCTCAAATTTATGCTGTAGAAGTCCATGTTGATTTTTAGTCCAAGCACAACTCAAAATATGTTTGCATAGCTTGGACATGGGAGTGTGATCTTGGTCCAATGTCCTCTAGTAGGTAACGACGGACTTCATGAATTATGATATGATTCAAACTCAATCACAGAGAACCATTTTTTTTTCTTCTTTTCTGCAAAGTTATTTCTGCTTCTTATGCAGCTTCTAAGTTGAATTATTGTATTAGATTTCGAAATCAAATTGTGGGTCAAGTTCCGGATCATGCAGAAAACAGGACTAAAATATGGCTTGTACACTCAAGGAGAAATAAAAAAATAACTGGGCAGAACTATAGTAGTTATATGTTATCACAGACAGTTATGTAGCCACTGTTTAGCATTTACTTAATTGTTTGTGGGGCAATTATAGGGTGGATTTGAATGGTTTCTGAACTCTCAATTTCTCTTTTATGCAACATTGAAACTGTTTTCGCAAAGGAAAGCCTTGGCTCTAAGGCTTGTATTGGAAGTCCATCTAGCGGATTCATGCATTGTGAACTGTGTGTAGAATTCAATACAATTTCTATTATAAACCCCATCAGATTATATAATTTGAAAAAATTTGTGCCCCATTATGTGATCGCTCTCTCTCTCTTTCTTGCTGTGTGTGTAATTGTGGATAGTAAAGATTGATTTTACTTAAATCTAGTCTTGACTGTCCTTGTAAAGTTGAATGGTTAGCATTAGTTACTTTAACGTCTTTGTTGTCACTTGATATTCTCCGTAATTTATATGTATTGGGTTATTATCCTTAACTCATGCTTAAAGTTGATCATTACTTCAGTCATGATCAAAATTTTCTCTTGGCTTCATTGGCATAAAATATTGTTGAACCTGATTGTTCAGTTGCTTTATTTGTTCTCTTACTGATTGTGCACACAGCATGCTTTGGAATTTGGATTCATGTAATGTAACAGCATATCATGCTTAATAGATAGAGGAACTATGTCCACCATTATATTTTTTATACCAAAATTAAAGCATCTGGTGCAATATTCCTGCACATCTGTTGACAATCACATGACTGGAATTTTGTATGCAGATGATCGTGTACCAACTGAACTCAAGAAGGCTATAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAGTATTATTCTCTCCCCCCAACCTCAGTCTCTTTATGTTCTTTATTAGTAGTTACATGTTATCAATAACAAACATGGTTACTTGCAGATCATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAGTCAGGGAAAGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAGAGAGCCCTTGGAGCTAAACTGCGTGGCAAGAAATGA

Protein sequence

>MS.gene73865.t1

MSGLGHISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGADIDTVKKHNAATNKAASSSTSLNTKRLDEDTENLAHDRVPTELKKAIMQARMDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQIISKLERALGAKLRGKK