AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04733

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04733.t1 MTR_8g102930 99.292 424 3 0 1 424 1 424 0.0 880
MS.gene04733.t1 MTR_6g087070 80.047 426 81 4 1 424 1 424 0.0 706
MS.gene04733.t1 MTR_3g110180 61.432 433 155 5 1 424 1 430 0.0 516
MS.gene04733.t1 MTR_4g126010 68.421 361 112 2 1 360 1 360 0.0 515
MS.gene04733.t1 MTR_3g110180 61.432 433 154 6 1 424 1 429 0.0 513
MS.gene04733.t1 MTR_2g099670 63.452 394 133 5 1 385 1 392 1.39e-180 512
MS.gene04733.t1 MTR_1g042280 64.524 389 129 4 1 385 2 385 1.42e-180 511
MS.gene04733.t1 MTR_1g069720 76.846 298 69 0 1 298 1 298 2.07e-177 503
MS.gene04733.t1 MTR_1g004990 58.372 430 162 5 1 422 1 421 3.60e-177 501
MS.gene04733.t1 MTR_1g075870 64.894 376 115 5 1 366 2 370 1.83e-175 498
MS.gene04733.t1 MTR_8g018310 76.254 299 70 1 1 299 1 298 6.20e-175 498
MS.gene04733.t1 MTR_1g075870 71.924 317 86 2 1 314 2 318 7.75e-175 491
MS.gene04733.t1 MTR_7g097160 75.421 297 73 0 1 297 1 297 3.68e-174 495
MS.gene04733.t1 MTR_8g018310 76.254 299 70 1 1 299 1 298 9.35e-174 492
MS.gene04733.t1 MTR_2g039930 57.079 445 156 6 1 423 1 432 5.72e-172 490
MS.gene04733.t1 MTR_1g042280 75.540 278 65 2 40 314 9 286 3.85e-159 451
MS.gene04733.t1 MTR_0492s0030 60.942 361 131 4 1 352 1 360 3.42e-157 448
MS.gene04733.t1 MTR_0543s0020 60.942 361 131 4 1 352 1 360 3.42e-157 448
MS.gene04733.t1 MTR_1g075870 73.846 260 65 2 58 314 2 261 8.85e-146 416
MS.gene04733.t1 MTR_2g099670 61.862 333 116 5 62 385 10 340 8.86e-146 421
MS.gene04733.t1 MTR_2g039930 58.642 324 110 4 82 386 1 319 9.34e-131 382
MS.gene04733.t1 MTR_7g097160 78.571 154 33 0 144 297 25 178 9.64e-88 270
MS.gene04733.t1 MTR_7g006030 36.735 294 166 7 2 278 27 317 5.21e-55 192
MS.gene04733.t1 MTR_1g116210 38.276 290 162 8 2 278 109 394 1.99e-54 192
MS.gene04733.t1 MTR_7g085540 37.543 293 162 8 2 277 137 425 2.61e-53 189
MS.gene04733.t1 MTR_1g007150 36.918 279 163 6 5 273 118 393 1.07e-52 187
MS.gene04733.t1 MTR_3g110240 37.634 279 161 6 5 273 115 390 2.99e-52 186
MS.gene04733.t1 MTR_8g014050 34.752 282 162 6 9 273 128 404 1.23e-47 173
MS.gene04733.t1 MTR_7g116400 53.731 67 30 1 80 145 1 67 4.44e-17 76.3
MS.gene04733.t1 MTR_7g073520 36.719 128 67 4 109 236 252 365 4.15e-14 74.3
MS.gene04733.t1 MTR_7g113490 27.523 218 133 6 9 213 68 273 2.78e-13 72.0
MS.gene04733.t1 MTR_5g009830 30.698 215 133 6 5 213 63 267 6.79e-13 70.5
MS.gene04733.t1 MTR_5g009830 28.837 215 137 5 5 213 63 267 1.68e-12 69.3
MS.gene04733.t1 MTR_2g049790 27.632 228 130 9 3 214 17 225 1.24e-11 66.6
MS.gene04733.t1 MTR_8g099095 30.660 212 129 8 9 213 66 266 1.39e-11 66.6
MS.gene04733.t1 MTR_4g132860 28.824 170 104 4 100 269 178 330 2.23e-11 65.5
MS.gene04733.t1 MTR_5g092815 27.273 231 149 6 9 233 91 308 2.73e-11 65.5
MS.gene04733.t1 MTR_3g099920 29.167 216 127 8 8 213 18 217 2.88e-11 65.5
MS.gene04733.t1 MTR_3g086530 24.895 237 136 8 9 214 93 318 5.53e-11 64.3
MS.gene04733.t1 MTR_3g086530 24.895 237 136 8 9 214 93 318 6.51e-11 64.3
MS.gene04733.t1 MTR_1g090917 27.966 236 155 8 9 236 51 279 7.06e-11 64.3
MS.gene04733.t1 MTR_5g092810 28.571 231 140 7 9 230 92 306 7.62e-11 64.3
MS.gene04733.t1 MTR_1g090917 27.966 236 155 8 9 236 51 279 8.83e-11 63.9
MS.gene04733.t1 MTR_5g007590 42.667 75 35 1 71 145 53 119 9.17e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04733.t1 AT4G28880 73.050 423 95 4 1 415 1 412 0.0 642
MS.gene04733.t1 AT4G28880 73.050 423 95 4 1 415 1 412 0.0 642
MS.gene04733.t1 AT4G28880 73.050 423 95 4 1 415 1 412 0.0 642
MS.gene04733.t1 AT4G28880 73.050 423 95 4 1 415 1 412 0.0 642
MS.gene04733.t1 AT4G28860 72.235 425 94 7 1 415 1 411 0.0 623
MS.gene04733.t1 AT4G28860 77.657 367 70 3 1 359 1 363 0.0 602
MS.gene04733.t1 AT5G57015 72.956 318 80 1 1 312 1 318 3.32e-178 504
MS.gene04733.t1 AT4G26100 70.030 337 95 3 1 333 1 335 7.05e-178 504
MS.gene04733.t1 AT1G72710 69.298 342 103 2 1 341 1 341 1.99e-175 498
MS.gene04733.t1 AT3G23340 58.255 424 159 5 1 420 1 410 1.24e-174 496
MS.gene04733.t1 AT2G19470 59.406 404 132 4 1 389 1 387 4.19e-174 494
MS.gene04733.t1 AT1G03930 73.401 297 79 0 1 297 1 297 1.15e-172 492
MS.gene04733.t1 AT5G44100 73.737 297 78 0 1 297 1 297 2.28e-172 491
MS.gene04733.t1 AT5G44100 73.737 297 78 0 1 297 1 297 2.28e-172 491
MS.gene04733.t1 AT4G28540 73.826 298 78 0 1 298 5 302 3.36e-172 491
MS.gene04733.t1 AT5G43320 56.621 438 169 6 1 419 1 436 6.84e-171 488
MS.gene04733.t1 AT1G04440 64.067 359 115 4 1 346 1 358 1.75e-168 481
MS.gene04733.t1 AT4G14340 56.813 433 165 7 1 423 7 427 5.36e-168 479
MS.gene04733.t1 AT5G43320 74.074 297 77 0 1 297 1 297 5.68e-168 476
MS.gene04733.t1 AT5G43320 74.074 297 77 0 1 297 1 297 5.68e-168 476
MS.gene04733.t1 AT4G14340 67.802 323 98 2 1 318 7 328 2.58e-165 469
MS.gene04733.t1 AT3G23340 55.660 424 156 6 1 420 1 396 5.75e-162 463
MS.gene04733.t1 AT4G08800 62.245 294 79 2 1 294 1 262 1.47e-135 390
MS.gene04733.t1 AT2G25760 38.112 286 160 5 5 273 101 386 1.04e-55 195
MS.gene04733.t1 AT3G13670 36.735 294 166 7 2 278 127 417 4.57e-55 194
MS.gene04733.t1 AT3G03940 38.225 293 160 8 2 277 130 418 3.08e-54 192
MS.gene04733.t1 AT2G25760 37.762 286 158 6 5 273 101 383 1.79e-53 189
MS.gene04733.t1 AT5G18190 37.288 295 164 8 2 279 120 410 1.08e-52 187
MS.gene04733.t1 AT5G18190 37.288 295 164 8 2 279 120 410 1.08e-52 187
MS.gene04733.t1 AT4G23650 30.841 214 132 6 8 215 77 280 3.93e-14 74.7
MS.gene04733.t1 AT3G06030 27.650 217 134 7 9 213 68 273 1.49e-13 73.2
MS.gene04733.t1 AT4G24400 27.381 252 131 9 7 236 7 228 1.61e-11 66.2
MS.gene04733.t1 AT3G23000 28.182 220 137 8 3 213 19 226 1.64e-11 66.2
MS.gene04733.t1 AT4G24400 27.381 252 131 9 7 236 7 228 1.99e-11 65.9
MS.gene04733.t1 AT2G41860 28.910 211 134 6 9 213 54 254 3.78e-11 65.5
MS.gene04733.t1 AT4G13020 28.261 184 118 4 5 180 8 185 5.20e-11 64.7
MS.gene04733.t1 AT4G13020 28.261 184 118 4 5 180 8 185 5.21e-11 64.7
MS.gene04733.t1 AT4G13020 28.723 188 115 5 1 180 1 177 5.32e-11 64.3
MS.gene04733.t1 AT4G13020 28.723 188 115 5 1 180 1 177 5.32e-11 64.7
MS.gene04733.t1 AT3G49370 29.412 221 132 9 7 215 140 348 5.44e-11 65.1
MS.gene04733.t1 AT4G13020 28.723 188 115 5 1 180 1 177 5.66e-11 64.3
MS.gene04733.t1 AT3G10540 27.542 236 156 8 9 236 45 273 5.76e-11 64.7
MS.gene04733.t1 AT1G51660 26.772 254 155 9 12 255 82 314 5.93e-11 64.3
MS.gene04733.t1 AT2G41860 28.910 211 134 6 9 213 54 254 5.93e-11 64.7
MS.gene04733.t1 AT2G46700 25.571 219 141 6 6 213 140 347 6.21e-11 64.7
MS.gene04733.t1 AT4G13020 28.723 188 115 5 1 180 1 177 6.69e-11 63.9

Find 109 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGACAAGGCAGGGTTTA+AGG 0.145583 4.2:-2449589 None:intergenic
CTTGGTGCAGGTGGCATTCC+AGG 0.196530 4.2:+2446702 MS.gene04733:intron
CAGGTTTACATAATTGATTT+TGG 0.206036 4.2:+2447288 MS.gene04733:intron
GCCTTCCTTGGCAAGGTCTA+AGG 0.233807 4.2:+2447840 MS.gene04733:intron
TTTGATCAGCGGCCTGATTA+TGG 0.242360 4.2:+2448086 MS.gene04733:CDS
CATGGGCAAGCCAGTAAAAT+TGG 0.281681 4.2:+2449630 MS.gene04733:CDS
AGGGAGAACAAAAGCTTAAC+AGG 0.296533 4.2:+2447509 MS.gene04733:intron
TCAGGAAATGCTACTGGTTC+TGG 0.311321 4.2:+2449306 MS.gene04733:CDS
GTGGCATTCCAGGCTTAAAA+TGG 0.316285 4.2:+2446712 MS.gene04733:CDS
TCTTTACCACAGCCAGTTCC+TGG 0.326468 4.2:+2448921 MS.gene04733:intron
GTACTTCTGTACTTCCTTAG+AGG 0.327253 4.2:+2447694 MS.gene04733:CDS
CTCCTGCTGGTACTTCAAAA+AGG 0.340286 4.2:+2449562 MS.gene04733:CDS
TAAAATGGTTTGGCATAGAT+AGG 0.351034 4.2:+2446727 MS.gene04733:CDS
GCAAAGTAGACGGGATGATT+TGG 0.359030 4.2:+2447657 MS.gene04733:CDS
TACCATGCTTGACATTCATT+TGG 0.370830 4.2:-2449697 None:intergenic
GAATGCCATACCTTCCTCTA+AGG 0.375079 4.2:-2447708 None:intergenic
GCAAGTTGCAATACTCATCT+TGG 0.379672 4.2:+2447545 MS.gene04733:CDS
TGATTGCTGATACTTTAAAA+TGG 0.383962 4.2:-2448736 None:intergenic
GCAGACAAGGCAGGGTTTAA+GGG 0.384050 4.2:-2449588 None:intergenic
CGGTTACTTGCACCAGGAAC+TGG 0.392308 4.2:-2448933 None:intergenic
GTGCTTGCCATTGATTTACT+TGG 0.393997 4.2:+2446759 MS.gene04733:CDS
CGCTTCAAGAATCCATAATC+AGG 0.403903 4.2:-2448098 None:intergenic
ATTCCAGGCTTAAAATGGTT+TGG 0.408195 4.2:+2446717 MS.gene04733:CDS
CCAATCGCCACATCCCTTAC+AGG 0.410603 4.2:+2447340 MS.gene04733:CDS
AGGGATGTGGCGATTGGTTG+TGG 0.418253 4.2:-2447334 None:intergenic
GATGACATCCAGCTACTTGA+AGG 0.432963 4.2:-2449654 None:intergenic
TGGGCTAGCAAAACGGTATC+GGG 0.438977 4.2:+2447308 MS.gene04733:CDS
AAGTCCCATGAGGAAGTTAT+CGG 0.450800 4.2:-2447023 None:intergenic
TGCAATACTCATCTTGGGAT+TGG 0.451960 4.2:+2447551 MS.gene04733:CDS
CAAGTTGCAATACTCATCTT+GGG 0.453718 4.2:+2447546 MS.gene04733:CDS
AAGCTCTACAATATTCTTCA+AGG 0.460096 4.2:+2446588 MS.gene04733:CDS
GAACCTTCCAACACTGGACA+TGG 0.461334 4.2:+2449612 MS.gene04733:CDS
AATCACCTTCACGAGCAAAT+AGG 0.462598 4.2:-2448133 None:intergenic
CCTTCCTTGGCAAGGTCTAA+GGG 0.464110 4.2:+2447841 MS.gene04733:CDS
TTGGGCTAGCAAAACGGTAT+CGG 0.464581 4.2:+2447307 MS.gene04733:CDS
ATTGAATATGTGCATTCTAA+AGG 0.468242 4.2:+2446977 MS.gene04733:CDS
TTCATGCATATTCAGGGCAT+GGG 0.474995 4.2:+2449268 MS.gene04733:intron
TGCTTGCCATTGATTTACTT+GGG 0.479210 4.2:+2446760 MS.gene04733:CDS
TCTGCTTCTTATGCTCCTGC+TGG 0.479546 4.2:+2449549 MS.gene04733:CDS
ATCAAATATACTCACAGATA+AGG 0.481086 4.2:-2448781 None:intergenic
TTGAAGAATATTGTAGAGCT+TGG 0.482642 4.2:-2446586 None:intergenic
GTCAGAACTCAAGTTTCTAC+CGG 0.488889 4.2:-2449355 None:intergenic
AAATTGGACCTTCAAGTAGC+TGG 0.490531 4.2:+2449646 MS.gene04733:CDS
GAAGGTTCAGCAGACAAGGC+AGG 0.495629 4.2:-2449597 None:intergenic
TACAAGCTTGGCCGCAAGAT+CGG 0.497439 4.2:+2446215 MS.gene04733:CDS
TTGTTTAGCCTTCCTTGGCA+AGG 0.498778 4.2:+2447833 MS.gene04733:intron
TGCCCATGTCCAGTGTTGGA+AGG 0.501193 4.2:-2449615 None:intergenic
CTTGGCCGCAAGATCGGAAG+TGG 0.502438 4.2:+2446221 MS.gene04733:CDS
ATGTCAATGAGTGGCAGTAA+TGG 0.510047 4.2:-2448064 None:intergenic
GGTACTATGCAAATCTCATC+CGG 0.516193 4.2:+2448022 MS.gene04733:intron
GGGGAAGAGCGAATTAGATC+AGG 0.520235 4.2:+2449288 MS.gene04733:CDS
ACACTGTAGAACTACCTGTA+AGG 0.520596 4.2:-2447354 None:intergenic
AACATGGAGCGCATCGTTGG+CGG 0.520716 4.2:+2446188 None:intergenic
CCCTTAGACCTTGCCAAGGA+AGG 0.522544 4.2:-2447841 None:intergenic
CAAAACATGGAGCGCATCGT+TGG 0.523862 4.2:+2446185 None:intergenic
GAACTCAAGTTTCTACCGGC+TGG 0.525103 4.2:-2449351 None:intergenic
AAGATCGGAAGTGGATCCTT+CGG 0.526716 4.2:+2446230 MS.gene04733:CDS
ACTTGGTCGGAAGGCCAACC+AGG 0.527701 4.2:+2447042 MS.gene04733:CDS
ATTAGATCAGGAAATGCTAC+TGG 0.537963 4.2:+2449300 MS.gene04733:CDS
GATAACTTCCTCATGGGACT+TGG 0.538752 4.2:+2447025 MS.gene04733:CDS
GTTGGCGGCAGCTACAAGCT+TGG 0.539526 4.2:+2446203 MS.gene04733:CDS
GTTGGAAGGTTCAGCAGACA+AGG 0.540905 4.2:-2449601 None:intergenic
ACTAGGCCCAAGTAAATCAA+TGG 0.543018 4.2:-2446766 None:intergenic
GGCTTGCCCATGTCCAGTGT+TGG 0.544697 4.2:-2449619 None:intergenic
GCTTAAATACTGACCTCGAT+AGG 0.544757 4.2:-2447917 None:intergenic
ATTCTAAAGGATATATGCAT+AGG 0.544834 4.2:+2446990 MS.gene04733:CDS
ATGGATGTTGACAATCATCA+AGG 0.547757 4.2:+2448969 MS.gene04733:CDS
AAAATGGTTTGGCATAGATA+GGG 0.551435 4.2:+2446728 MS.gene04733:CDS
GTTAATGTTAGCTGATCAAA+TGG 0.552458 4.2:+2446839 MS.gene04733:CDS
TCTGCTGAACCTTCCAACAC+TGG 0.553667 4.2:+2449606 MS.gene04733:CDS
CAGACAAGGCAGGGTTTAAG+GGG 0.554251 4.2:-2449587 None:intergenic
AAGGTTCAGCAGACAAGGCA+GGG 0.560637 4.2:-2449596 None:intergenic
CCTCATGGGACTTGGTCGGA+AGG 0.562643 4.2:+2447033 MS.gene04733:CDS
TTCTAAAGGATATATGCATA+GGG 0.565532 4.2:+2446991 MS.gene04733:CDS
TTCTGTACTTCCTTAGAGGA+AGG 0.567077 4.2:+2447698 MS.gene04733:CDS
CACTGTAGAACTACCTGTAA+GGG 0.569854 4.2:-2447353 None:intergenic
AGTCCCATGAGGAAGTTATC+GGG 0.570424 4.2:-2447022 None:intergenic
CGGGATGATTTGGAATCACT+AGG 0.571323 4.2:+2447667 MS.gene04733:CDS
TAAACCCGATAACTTCCTCA+TGG 0.571460 4.2:+2447018 MS.gene04733:CDS
AGAGACCTATTTGCTCGTGA+AGG 0.573148 4.2:+2448128 MS.gene04733:CDS
TAACCGTCATGCAGTAGCAA+TGG 0.576648 4.2:+2448950 MS.gene04733:CDS
AAGTATGAAGCAAACTCTAC+CGG 0.580492 4.2:-2448041 None:intergenic
AAACCCGATAACTTCCTCAT+GGG 0.582601 4.2:+2447019 MS.gene04733:CDS
TTTGACGGCGACGATTTCGA+AGG 0.585931 4.2:-2446371 None:intergenic
AACCTTCCAACACTGGACAT+GGG 0.589719 4.2:+2449613 MS.gene04733:CDS
AGGATCCACTTCCGATCTTG+CGG 0.593120 4.2:-2446226 None:intergenic
CCTGTAAGGGATGTGGCGAT+TGG 0.601182 4.2:-2447340 None:intergenic
ATGGTTTGGCATAGATAGGG+AGG 0.602024 4.2:+2446731 MS.gene04733:CDS
AGCAGGAGCATAAGAAGCAG+AGG 0.604520 4.2:-2449547 None:intergenic
TAATAAGATAGTTACCTGGT+TGG 0.604773 4.2:-2447056 None:intergenic
AGAACTACCTGTAAGGGATG+TGG 0.605784 4.2:-2447347 None:intergenic
AATATACTCACAGATAAGGA+AGG 0.613072 4.2:-2448777 None:intergenic
GCATGACGGTTACTTGCACC+AGG 0.618520 4.2:-2448939 None:intergenic
TCCTTCGGTGAAATTTACCT+CGG 0.620087 4.2:+2446245 MS.gene04733:CDS
GTTCAGTTCAAATCACCAGC+CGG 0.624880 4.2:+2449336 MS.gene04733:CDS
TCATGCATATTCAGGGCATG+GGG 0.625170 4.2:+2449269 MS.gene04733:intron
ACTCATTGACATTTGATCAG+CGG 0.629606 4.2:+2448075 MS.gene04733:CDS
ACCGAGGTAAATTTCACCGA+AGG 0.633578 4.2:-2446246 None:intergenic
ACTTCCTCATGGGACTTGGT+CGG 0.634675 4.2:+2447029 MS.gene04733:CDS
TATCTTACATTCTTGTCACG+AGG 0.637274 4.2:-2449381 None:intergenic
GCATCCACAGTTGCTTTACG+AGG 0.642435 4.2:+2446563 MS.gene04733:CDS
GCAGCCCTTAGACCTTGCCA+AGG 0.650628 4.2:-2447845 None:intergenic
CTCTACAATATTCTTCAAGG+AGG 0.657190 4.2:+2446591 MS.gene04733:CDS
GCTGATCAAATGTCAATGAG+TGG 0.657329 4.2:-2448073 None:intergenic
CATCCATTGCTACTGCATGA+CGG 0.662544 4.2:-2448953 None:intergenic
GAAGGTATCGACTCCTATCG+AGG 0.668216 4.2:+2447904 MS.gene04733:CDS
GGGAGAACAAAAGCTTAACA+GGG 0.678093 4.2:+2447510 MS.gene04733:intron
TTGGCCTCGTAAAGCAACTG+TGG 0.692532 4.2:-2446567 None:intergenic
CCTTCCGACCAAGTCCCATG+AGG 0.721487 4.2:-2447033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATATTAAAAGTAAAAT+TGG - chr4.2:2446450-2446469 None:intergenic 10.0%
!! ATAAAAGAATGAAACAAAAA+TGG - chr4.2:2447380-2447399 None:intergenic 15.0%
!! TACCCATATAATTAAAAATT+TGG - chr4.2:2448394-2448413 None:intergenic 15.0%
!!! TGCCAAATTTTTAATTATAT+GGG + chr4.2:2448389-2448408 MS.gene04733:intron 15.0%
!!! TTTAGTAATTATTCTCTTTT+TGG + chr4.2:2449499-2449518 MS.gene04733:intron 15.0%
!! TTTAATATTATCAGAAGCAA+GGG - chr4.2:2448897-2448916 None:intergenic 20.0%
!!! AATTATTTTAAACACATGCA+TGG + chr4.2:2448611-2448630 MS.gene04733:intron 20.0%
!!! AATTTGATTTCGTTTTTGAT+TGG + chr4.2:2448712-2448731 MS.gene04733:CDS 20.0%
!!! AGGTTTACATAATTGATTTT+GGG + chr4.2:2447289-2447308 MS.gene04733:intron 20.0%
!!! AGTTATTTTACTTTATTCAG+GGG - chr4.2:2447972-2447991 None:intergenic 20.0%
!!! CAGTTATTTTACTTTATTCA+GGG - chr4.2:2447973-2447992 None:intergenic 20.0%
!!! CTGCCAAATTTTTAATTATA+TGG + chr4.2:2448388-2448407 MS.gene04733:intron 20.0%
!!! TTCTATCATAAACCATATTT+TGG + chr4.2:2447234-2447253 MS.gene04733:intron 20.0%
!!! TTTAAGGAATAGTATTTTAG+AGG + chr4.2:2448459-2448478 MS.gene04733:intron 20.0%
!!! TTTTAATATTATCAGAAGCA+AGG - chr4.2:2448898-2448917 None:intergenic 20.0%
! AAACATTTATTCAAGCTGAA+AGG - chr4.2:2447605-2447624 None:intergenic 25.0%
! ACTAACAAATATAACCTACA+GGG + chr4.2:2447490-2447509 MS.gene04733:intron 25.0%
! ATACATAAAGGAAAAACAGA+AGG - chr4.2:2448681-2448700 None:intergenic 25.0%
! ATCAAATATACTCACAGATA+AGG - chr4.2:2448784-2448803 None:intergenic 25.0%
! ATTGAATATGTGCATTCTAA+AGG + chr4.2:2446977-2446996 MS.gene04733:CDS 25.0%
! CCTGAATAAAGTAAAATAAC+TGG + chr4.2:2447971-2447990 MS.gene04733:intron 25.0%
! TGAAAAAATATGTCAGAAGA+AGG + chr4.2:2447886-2447905 MS.gene04733:CDS 25.0%
! TTATGAATTGGACCAAAATA+TGG - chr4.2:2447249-2447268 None:intergenic 25.0%
! TTTGTTAGTCACAAAAACTA+AGG - chr4.2:2447479-2447498 None:intergenic 25.0%
!! AAGATTTTCATGCATATTCA+GGG + chr4.2:2449262-2449281 MS.gene04733:intron 25.0%
!! ATTCTAAAGGATATATGCAT+AGG + chr4.2:2446990-2447009 MS.gene04733:CDS 25.0%
!! TGATTGCTGATACTTTAAAA+TGG - chr4.2:2448739-2448758 None:intergenic 25.0%
!! TTCTAAAGGATATATGCATA+GGG + chr4.2:2446991-2447010 MS.gene04733:CDS 25.0%
!!! ATCTTTTTGTTTATTGTGGA+AGG + chr4.2:2446796-2446815 MS.gene04733:CDS 25.0%
!!! ATTTTTTTTCCCTTTCCAAA+AGG + chr4.2:2448001-2448020 MS.gene04733:intron 25.0%
!!! CAGGTTTACATAATTGATTT+TGG + chr4.2:2447288-2447307 MS.gene04733:intron 25.0%
!!! CCAGTTATTTTACTTTATTC+AGG - chr4.2:2447974-2447993 None:intergenic 25.0%
!!! CTACTTGTTGCTATTTATTA+TGG + chr4.2:2447111-2447130 MS.gene04733:intron 25.0%
!!! GAAGATCTTTTTGTTTATTG+TGG + chr4.2:2446792-2446811 MS.gene04733:CDS 25.0%
!!! GGTACAAAATGTTTTGATTT+TGG + chr4.2:2448410-2448429 MS.gene04733:intron 25.0%
!!! GTTATTTTACTTTATTCAGG+GGG - chr4.2:2447971-2447990 None:intergenic 25.0%
!!! GTTGTTTTTGTATTGTTCTA+AGG + chr4.2:2446640-2446659 MS.gene04733:intron 25.0%
!!! TTATTTTACTTTATTCAGGG+GGG - chr4.2:2447970-2447989 None:intergenic 25.0%
!!! TTCCTTGTCATTTATTTTGT+GGG + chr4.2:2448834-2448853 MS.gene04733:intron 25.0%
!!! TTCTCTTTTTGGTAGATTTT+TGG + chr4.2:2449510-2449529 MS.gene04733:intron 25.0%
!!! TTTTTTTAGAGCAAAGTAGA+CGG + chr4.2:2447647-2447666 MS.gene04733:intron 25.0%
AAGCTCTACAATATTCTTCA+AGG + chr4.2:2446588-2446607 MS.gene04733:CDS 30.0%
AATATACTCACAGATAAGGA+AGG - chr4.2:2448780-2448799 None:intergenic 30.0%
ACAAAAAGATCTTCAAGACT+AGG - chr4.2:2446786-2446805 None:intergenic 30.0%
AGCAATGTAACGTTAAGTTT+GGG - chr4.2:2446514-2446533 None:intergenic 30.0%
AGGAGAGGAAAAGTTATATT+TGG - chr4.2:2448661-2448680 None:intergenic 30.0%
CAAATTAGAGAGTGAGTATT+AGG - chr4.2:2446421-2446440 None:intergenic 30.0%
CACAAAATAAATGACAAGGA+AGG - chr4.2:2448835-2448854 None:intergenic 30.0%
CAGCACATAGATTTATGAAT+TGG - chr4.2:2447261-2447280 None:intergenic 30.0%
CCTTAAATTTAGCCAATCAT+AGG - chr4.2:2448446-2448465 None:intergenic 30.0%
GACTAACAAATATAACCTAC+AGG + chr4.2:2447489-2447508 MS.gene04733:intron 30.0%
GCAAAAGCAATCAAATGATA+TGG - chr4.2:2448196-2448215 None:intergenic 30.0%
GCAATAATAAGATAGTTACC+TGG - chr4.2:2447063-2447082 None:intergenic 30.0%
GCTAGAAAAAGTCATTGTAA+AGG + chr4.2:2449075-2449094 MS.gene04733:intron 30.0%
GTTAATGTTAGCTGATCAAA+TGG + chr4.2:2446839-2446858 MS.gene04733:CDS 30.0%
GTTGTGAATGAAAAGAAGAA+CGG - chr4.2:2446288-2446307 None:intergenic 30.0%
TAAATTCAATGTTGCATCAC+AGG - chr4.2:2449431-2449450 None:intergenic 30.0%
TAATAAGATAGTTACCTGGT+TGG - chr4.2:2447059-2447078 None:intergenic 30.0%
TAGCAATGTAACGTTAAGTT+TGG - chr4.2:2446515-2446534 None:intergenic 30.0%
TATCCTTCTTGATTTCAAAG+AGG + chr4.2:2448492-2448511 MS.gene04733:intron 30.0%
TGCATGAAAATCTTCCAATT+AGG - chr4.2:2449256-2449275 None:intergenic 30.0%
TGGTTTATGATAGAACTGTA+TGG - chr4.2:2447229-2447248 None:intergenic 30.0%
TTACATTGCTAATTCCTTAC+AGG + chr4.2:2446524-2446543 MS.gene04733:intron 30.0%
TTGAAGAATATTGTAGAGCT+TGG - chr4.2:2446589-2446608 None:intergenic 30.0%
! AAAATGGTTTGGCATAGATA+GGG + chr4.2:2446728-2446747 MS.gene04733:CDS 30.0%
! ATGTCTAAAACTGAGTAGAT+CGG + chr4.2:2449474-2449493 MS.gene04733:intron 30.0%
! CCTATGATTGGCTAAATTTA+AGG + chr4.2:2448443-2448462 MS.gene04733:intron 30.0%
! GAAGATTTTCATGCATATTC+AGG + chr4.2:2449261-2449280 MS.gene04733:intron 30.0%
! GTTTGAGATTTCATGTTTCT+TGG + chr4.2:2446684-2446703 MS.gene04733:intron 30.0%
! GTTTTTCCTTTATGTATGTC+AGG + chr4.2:2448684-2448703 MS.gene04733:intron 30.0%
! TAAAATGGTTTGGCATAGAT+AGG + chr4.2:2446727-2446746 MS.gene04733:CDS 30.0%
! TGTTTTACTATTCTCCTGTA+AGG - chr4.2:2446541-2446560 None:intergenic 30.0%
!! CTTGTTTGTTATGACCTAAT+TGG + chr4.2:2449239-2449258 MS.gene04733:intron 30.0%
!! GATTTTTGGAGAAGCAAATA+TGG + chr4.2:2449524-2449543 MS.gene04733:intron 30.0%
!! GTTCTGGAAAAAAATACTTC+AGG - chr4.2:2447751-2447770 None:intergenic 30.0%
!! TATTTTTGTTTAGCCTTCCT+TGG + chr4.2:2447828-2447847 MS.gene04733:intron 30.0%
!! TGCTTTTGCAATTGTTTCTT+GGG + chr4.2:2448207-2448226 MS.gene04733:intron 30.0%
!! TTGCTTTTGCAATTGTTTCT+TGG + chr4.2:2448206-2448225 MS.gene04733:intron 30.0%
!!! CTTCCTTGTCATTTATTTTG+TGG + chr4.2:2448833-2448852 MS.gene04733:intron 30.0%
!!! GTTTTTGTATTGTTCTAAGG+AGG + chr4.2:2446643-2446662 MS.gene04733:intron 30.0%
!!! TTTTTTAGAGCAAAGTAGAC+GGG + chr4.2:2447648-2447667 MS.gene04733:intron 30.0%
AAGTATGAAGCAAACTCTAC+CGG - chr4.2:2448044-2448063 None:intergenic 35.0%
AAGTTAGCAAGGTATACCTT+CGG - chr4.2:2448283-2448302 None:intergenic 35.0%
AATGTAACGTTAAGTTTGGG+TGG - chr4.2:2446511-2446530 None:intergenic 35.0%
ACATCTGCGAAATAATGAGT+AGG + chr4.2:2448303-2448322 MS.gene04733:intron 35.0%
ACTCATTGACATTTGATCAG+CGG + chr4.2:2448075-2448094 MS.gene04733:CDS 35.0%
ATGGATGTTGACAATCATCA+AGG + chr4.2:2448969-2448988 MS.gene04733:CDS 35.0%
ATTACTGTCTTGAGAAACAG+CGG - chr4.2:2447774-2447793 None:intergenic 35.0%
ATTAGATCAGGAAATGCTAC+TGG + chr4.2:2449300-2449319 MS.gene04733:CDS 35.0%
ATTCCAGGCTTAAAATGGTT+TGG + chr4.2:2446717-2446736 MS.gene04733:CDS 35.0%
CAAGAAGTAATAACGTCTGT+TGG + chr4.2:2449050-2449069 MS.gene04733:intron 35.0%
CAAGTTGCAATACTCATCTT+GGG + chr4.2:2447546-2447565 MS.gene04733:CDS 35.0%
CAGGAAGAGTGAGTTTATTA+AGG - chr4.2:2449412-2449431 None:intergenic 35.0%
CTCTACAATATTCTTCAAGG+AGG + chr4.2:2446591-2446610 MS.gene04733:CDS 35.0%
GGTAACTGAAAACCTATGAT+TGG + chr4.2:2448431-2448450 MS.gene04733:intron 35.0%
GTCCCACAAAATAAATGACA+AGG - chr4.2:2448839-2448858 None:intergenic 35.0%
GTTAGTCACAAAAACTAAGG+AGG - chr4.2:2447476-2447495 None:intergenic 35.0%
TAAAGGAAAAACAGAAGGAG+AGG - chr4.2:2448676-2448695 None:intergenic 35.0%
TATCTTACATTCTTGTCACG+AGG - chr4.2:2449384-2449403 None:intergenic 35.0%
TCATAGCCTGACATACATAA+AGG - chr4.2:2448693-2448712 None:intergenic 35.0%
TTGATTTCAAAGAGGTCATG+TGG + chr4.2:2448500-2448519 MS.gene04733:intron 35.0%
TTGTGTGCAGTGTCTTAAAT+AGG + chr4.2:2448993-2449012 MS.gene04733:intron 35.0%
! ACTTGAAGGTCCAATTTTAC+TGG - chr4.2:2449643-2449662 None:intergenic 35.0%
! AGTCCTCATTTTCTCAAGAA+TGG + chr4.2:2448562-2448581 MS.gene04733:intron 35.0%
! GAGATTTGCATAGTACCTTT+TGG - chr4.2:2448019-2448038 None:intergenic 35.0%
! GCAGAAACTTACGATTTTGA+CGG - chr4.2:2446389-2446408 None:intergenic 35.0%
! GTCCTCATTTTCTCAAGAAT+GGG + chr4.2:2448563-2448582 MS.gene04733:intron 35.0%
! TCCTCATTTTCTCAAGAATG+GGG + chr4.2:2448564-2448583 MS.gene04733:intron 35.0%
!! CTTTTGCAATTGTTTCTTGG+GGG + chr4.2:2448209-2448228 MS.gene04733:intron 35.0%
!! GCTTTTGCAATTGTTTCTTG+GGG + chr4.2:2448208-2448227 MS.gene04733:intron 35.0%
!! TGACCTCTTTGAAATCAAGA+AGG - chr4.2:2448498-2448517 None:intergenic 35.0%
!! TGCATAGTACCTTTTGGAAA+GGG - chr4.2:2448013-2448032 None:intergenic 35.0%
!! TGCTTGCCATTGATTTACTT+GGG + chr4.2:2446760-2446779 MS.gene04733:CDS 35.0%
!! TTGCATAGTACCTTTTGGAA+AGG - chr4.2:2448014-2448033 None:intergenic 35.0%
!!! ATCTATGTGCTGTTTTTGTC+AGG + chr4.2:2447269-2447288 MS.gene04733:intron 35.0%
!!! ATTTATTTTGTGGGACTGAG+GGG + chr4.2:2448843-2448862 MS.gene04733:intron 35.0%
!!! CATTTATTTTGTGGGACTGA+GGG + chr4.2:2448842-2448861 MS.gene04733:intron 35.0%
!!! TCATTTATTTTGTGGGACTG+AGG + chr4.2:2448841-2448860 MS.gene04733:intron 35.0%
!!! TTGATTTTGGGCTAGCAAAA+CGG + chr4.2:2447301-2447320 MS.gene04733:CDS 35.0%
AAAAGAAGAACGGAAGAGAG+AGG - chr4.2:2446278-2446297 None:intergenic 40.0%
AAACCCGATAACTTCCTCAT+GGG + chr4.2:2447019-2447038 MS.gene04733:CDS 40.0%
AAATTGGACCTTCAAGTAGC+TGG + chr4.2:2449646-2449665 MS.gene04733:CDS 40.0%
AAGTCCCATGAGGAAGTTAT+CGG - chr4.2:2447026-2447045 None:intergenic 40.0%
AATCACCTTCACGAGCAAAT+AGG - chr4.2:2448136-2448155 None:intergenic 40.0%
AATTTGTCGAATACACCCGA+AGG + chr4.2:2448264-2448283 MS.gene04733:intron 40.0%
ACACTGTAGAACTACCTGTA+AGG - chr4.2:2447357-2447376 None:intergenic 40.0%
ACTAGGCCCAAGTAAATCAA+TGG - chr4.2:2446769-2446788 None:intergenic 40.0%
AGACAGGACTAAGACACAAA+AGG - chr4.2:2449150-2449169 None:intergenic 40.0%
AGCAACAAGTAGTTGACTGA+CGG - chr4.2:2447103-2447122 None:intergenic 40.0%
AGGGAGAACAAAAGCTTAAC+AGG + chr4.2:2447509-2447528 MS.gene04733:intron 40.0%
AGTAAGCAAGTTACGTCTTC+AGG - chr4.2:2448365-2448384 None:intergenic 40.0%
AGTCACAAAAACTAAGGAGG+TGG - chr4.2:2447473-2447492 None:intergenic 40.0%
AGTTAGCAAGGTATACCTTC+GGG - chr4.2:2448282-2448301 None:intergenic 40.0%
ATACTTCAGGAAAGATCGTG+TGG - chr4.2:2447738-2447757 None:intergenic 40.0%
ATGTCAATGAGTGGCAGTAA+TGG - chr4.2:2448067-2448086 None:intergenic 40.0%
CACTGTAGAACTACCTGTAA+GGG - chr4.2:2447356-2447375 None:intergenic 40.0%
CGCTTCAAGAATCCATAATC+AGG - chr4.2:2448101-2448120 None:intergenic 40.0%
CTTAGTCCTGTCTTAGAAGA+TGG + chr4.2:2449157-2449176 MS.gene04733:intron 40.0%
GACATTGAGGAGGTTAGATT+AGG + chr4.2:2448536-2448555 MS.gene04733:intron 40.0%
GCAAGTTGCAATACTCATCT+TGG + chr4.2:2447545-2447564 MS.gene04733:CDS 40.0%
GCTGATCAAATGTCAATGAG+TGG - chr4.2:2448076-2448095 None:intergenic 40.0%
GCTTAAATACTGACCTCGAT+AGG - chr4.2:2447920-2447939 None:intergenic 40.0%
GGGAGAACAAAAGCTTAACA+GGG + chr4.2:2447510-2447529 MS.gene04733:intron 40.0%
GGTACTATGCAAATCTCATC+CGG + chr4.2:2448022-2448041 MS.gene04733:intron 40.0%
GTACTTCTGTACTTCCTTAG+AGG + chr4.2:2447694-2447713 MS.gene04733:CDS 40.0%
GTCACAAAAACTAAGGAGGT+GGG - chr4.2:2447472-2447491 None:intergenic 40.0%
GTCAGAACTCAAGTTTCTAC+CGG - chr4.2:2449358-2449377 None:intergenic 40.0%
TAAACCCGATAACTTCCTCA+TGG + chr4.2:2447018-2447037 MS.gene04733:CDS 40.0%
TACTTCCTTAGAGGAAGGTA+TGG + chr4.2:2447703-2447722 MS.gene04733:intron 40.0%
TCACAAAAACTAAGGAGGTG+GGG - chr4.2:2447471-2447490 None:intergenic 40.0%
TCCCCATTCTTGAGAAAATG+AGG - chr4.2:2448568-2448587 None:intergenic 40.0%
TCCTTCGGTGAAATTTACCT+CGG + chr4.2:2446245-2446264 MS.gene04733:CDS 40.0%
TGCAATACTCATCTTGGGAT+TGG + chr4.2:2447551-2447570 MS.gene04733:CDS 40.0%
TTACTGTCTTGAGAAACAGC+GGG - chr4.2:2447773-2447792 None:intergenic 40.0%
TTCATGCATATTCAGGGCAT+GGG + chr4.2:2449268-2449287 MS.gene04733:intron 40.0%
TTCGCAGATGTAAGTTAGCA+AGG - chr4.2:2448294-2448313 None:intergenic 40.0%
TTCTGTACTTCCTTAGAGGA+AGG + chr4.2:2447698-2447717 MS.gene04733:CDS 40.0%
TTTACTTTATTCAGGGGGGA+GGG - chr4.2:2447966-2447985 None:intergenic 40.0%
TTTCATGCATATTCAGGGCA+TGG + chr4.2:2449267-2449286 MS.gene04733:intron 40.0%
! ATGCCAAACCATTTTAAGCC+TGG - chr4.2:2446723-2446742 None:intergenic 40.0%
! ATTTGGTACCGAAGATCAGA+GGG - chr4.2:2448644-2448663 None:intergenic 40.0%
! GATTTCATGTTTCTTGGTGC+AGG + chr4.2:2446690-2446709 MS.gene04733:intron 40.0%
! TAAGCTTTTGTTCTCCCTGT+AGG - chr4.2:2447507-2447526 None:intergenic 40.0%
! TATTTGGTACCGAAGATCAG+AGG - chr4.2:2448645-2448664 None:intergenic 40.0%
! TTTTACTTTATTCAGGGGGG+AGG - chr4.2:2447967-2447986 None:intergenic 40.0%
!! AAGCCTTATTCCACTAAGTG+GGG + chr4.2:2447180-2447199 MS.gene04733:intron 40.0%
!! CAAGCCTTATTCCACTAAGT+GGG + chr4.2:2447179-2447198 MS.gene04733:intron 40.0%
!! GTATTGTTCTAAGGAGGTAG+AGG + chr4.2:2446649-2446668 MS.gene04733:intron 40.0%
!! GTGCTTGCCATTGATTTACT+TGG + chr4.2:2446759-2446778 MS.gene04733:CDS 40.0%
!! TTCCATCCATCTTCTAAGAC+AGG - chr4.2:2449166-2449185 None:intergenic 40.0%
!!! AGTTTTGTTGACAACCTGCA+AGG + chr4.2:2449109-2449128 MS.gene04733:intron 40.0%
!!! TTCCTTTTTGAAGTACCAGC+AGG - chr4.2:2449567-2449586 None:intergenic 40.0%
AACCTTCCAACACTGGACAT+GGG + chr4.2:2449613-2449632 MS.gene04733:CDS 45.0%
AAGATCGGAAGTGGATCCTT+CGG + chr4.2:2446230-2446249 MS.gene04733:CDS 45.0%
ACCGAGGTAAATTTCACCGA+AGG - chr4.2:2446249-2446268 None:intergenic 45.0%
AGAACTACCTGTAAGGGATG+TGG - chr4.2:2447350-2447369 None:intergenic 45.0%
AGAGACCTATTTGCTCGTGA+AGG + chr4.2:2448128-2448147 MS.gene04733:CDS 45.0%
AGTCCCATGAGGAAGTTATC+GGG - chr4.2:2447025-2447044 None:intergenic 45.0%
CAAGGACATTGAGGACATTG+AGG + chr4.2:2448523-2448542 MS.gene04733:intron 45.0%
CATCCATTGCTACTGCATGA+CGG - chr4.2:2448956-2448975 None:intergenic 45.0%
CATGGGCAAGCCAGTAAAAT+TGG + chr4.2:2449630-2449649 MS.gene04733:CDS 45.0%
CCACTTAGTGGAATAAGGCT+TGG - chr4.2:2447181-2447200 None:intergenic 45.0%
CTCCTGCTGGTACTTCAAAA+AGG + chr4.2:2449562-2449581 MS.gene04733:CDS 45.0%
CTTATTCCACTAAGTGGGGT+CGG + chr4.2:2447184-2447203 MS.gene04733:intron 45.0%
GAATGCCATACCTTCCTCTA+AGG - chr4.2:2447711-2447730 None:intergenic 45.0%
GATAACTTCCTCATGGGACT+TGG + chr4.2:2447025-2447044 MS.gene04733:CDS 45.0%
GATGACATCCAGCTACTTGA+AGG - chr4.2:2449657-2449676 None:intergenic 45.0%
GCAAAGTAGACGGGATGATT+TGG + chr4.2:2447657-2447676 MS.gene04733:CDS 45.0%
GCAACAAGTAGTTGACTGAC+GGG - chr4.2:2447102-2447121 None:intergenic 45.0%
GGTATCAATATGCGTAGCTG+CGG - chr4.2:2446353-2446372 None:intergenic 45.0%
GTCCTGTCTTAGAAGATGGA+TGG + chr4.2:2449161-2449180 MS.gene04733:intron 45.0%
GTGGCATTCCAGGCTTAAAA+TGG + chr4.2:2446712-2446731 MS.gene04733:CDS 45.0%
GTTCAGTTCAAATCACCAGC+CGG + chr4.2:2449336-2449355 MS.gene04733:CDS 45.0%
TAACCGTCATGCAGTAGCAA+TGG + chr4.2:2448950-2448969 MS.gene04733:CDS 45.0%
TCATGCATATTCAGGGCATG+GGG + chr4.2:2449269-2449288 MS.gene04733:intron 45.0%
TTACTTTATTCAGGGGGGAG+GGG - chr4.2:2447965-2447984 None:intergenic 45.0%
TTCAAAGAGGTCATGTGGCA+AGG + chr4.2:2448505-2448524 MS.gene04733:intron 45.0%
TTGTTGACAACCTGCAAGGT+TGG + chr4.2:2449113-2449132 MS.gene04733:intron 45.0%
TTTGATCAGCGGCCTGATTA+TGG + chr4.2:2448086-2448105 MS.gene04733:CDS 45.0%
! ATGGTTTGGCATAGATAGGG+AGG + chr4.2:2446731-2446750 MS.gene04733:CDS 45.0%
! CGGGATGATTTGGAATCACT+AGG + chr4.2:2447667-2447686 MS.gene04733:CDS 45.0%
! GTTTTCCTCCCTCTGATCTT+CGG + chr4.2:2448633-2448652 MS.gene04733:intron 45.0%
! TTCATGTTTCTTGGTGCAGG+TGG + chr4.2:2446693-2446712 MS.gene04733:intron 45.0%
! TTGTTTAGCCTTCCTTGGCA+AGG + chr4.2:2447833-2447852 MS.gene04733:intron 45.0%
!! CCAAGCCTTATTCCACTAAG+TGG + chr4.2:2447178-2447197 MS.gene04733:intron 45.0%
!! TCAGGAAATGCTACTGGTTC+TGG + chr4.2:2449306-2449325 MS.gene04733:CDS 45.0%
!! TTGGGCTAGCAAAACGGTAT+CGG + chr4.2:2447307-2447326 MS.gene04733:CDS 45.0%
AAGAGAGAGGATAGTCACCG+AGG - chr4.2:2446265-2446284 None:intergenic 50.0%
AAGGTTCAGCAGACAAGGCA+GGG - chr4.2:2449599-2449618 None:intergenic 50.0%
AGCAGACAAGGCAGGGTTTA+AGG - chr4.2:2449592-2449611 None:intergenic 50.0%
AGGATCCACTTCCGATCTTG+CGG - chr4.2:2446229-2446248 None:intergenic 50.0%
CAGACAAGGCAGGGTTTAAG+GGG - chr4.2:2449590-2449609 None:intergenic 50.0%
CCTTCCTTGGCAAGGTCTAA+GGG + chr4.2:2447841-2447860 MS.gene04733:CDS 50.0%
CGACCCCACTTAGTGGAATA+AGG - chr4.2:2447186-2447205 None:intergenic 50.0%
GAACCTTCCAACACTGGACA+TGG + chr4.2:2449612-2449631 MS.gene04733:CDS 50.0%
GAACTCAAGTTTCTACCGGC+TGG - chr4.2:2449354-2449373 None:intergenic 50.0%
GCAGACAAGGCAGGGTTTAA+GGG - chr4.2:2449591-2449610 None:intergenic 50.0%
GGACATTGAGGACATTGAGG+AGG + chr4.2:2448526-2448545 MS.gene04733:intron 50.0%
GGGGAAGAGCGAATTAGATC+AGG + chr4.2:2449288-2449307 MS.gene04733:CDS 50.0%
GTCATGTGGCAAGGACATTG+AGG + chr4.2:2448514-2448533 MS.gene04733:intron 50.0%
GTTGGAAGGTTCAGCAGACA+AGG - chr4.2:2449604-2449623 None:intergenic 50.0%
TACAAGCTTGGCCGCAAGAT+CGG + chr4.2:2446215-2446234 MS.gene04733:CDS 50.0%
TACTTTATTCAGGGGGGAGG+GGG - chr4.2:2447964-2447983 None:intergenic 50.0%
TCTGCTGAACCTTCCAACAC+TGG + chr4.2:2449606-2449625 MS.gene04733:CDS 50.0%
TCTGCTTCTTATGCTCCTGC+TGG + chr4.2:2449549-2449568 MS.gene04733:CDS 50.0%
TCTTTACCACAGCCAGTTCC+TGG + chr4.2:2448921-2448940 MS.gene04733:intron 50.0%
TGGGACTGAGGGGTTACTAA+TGG + chr4.2:2448853-2448872 MS.gene04733:intron 50.0%
TTGGCCTCGTAAAGCAACTG+TGG - chr4.2:2446570-2446589 None:intergenic 50.0%
TTTGACGGCGACGATTTCGA+AGG - chr4.2:2446374-2446393 None:intergenic 50.0%
! ACCTGCAAGGTTGGCTGAAT+CGG + chr4.2:2449122-2449141 MS.gene04733:intron 50.0%
! ACTGACGGGCAAGTTCAACT+GGG - chr4.2:2447088-2447107 None:intergenic 50.0%
! ACTTCCTCATGGGACTTGGT+CGG + chr4.2:2447029-2447048 MS.gene04733:CDS 50.0%
! AGCAGGAGCATAAGAAGCAG+AGG - chr4.2:2449550-2449569 None:intergenic 50.0%
! GCAATTGTTTCTTGGGGGCA+TGG + chr4.2:2448214-2448233 MS.gene04733:intron 50.0%
! GCATCCACAGTTGCTTTACG+AGG + chr4.2:2446563-2446582 MS.gene04733:CDS 50.0%
! TCTTGAGAAACAGCGGGTTC+TGG - chr4.2:2447767-2447786 None:intergenic 50.0%
!! GAAGGTATCGACTCCTATCG+AGG + chr4.2:2447904-2447923 MS.gene04733:CDS 50.0%
!! TGGGCTAGCAAAACGGTATC+GGG + chr4.2:2447308-2447327 MS.gene04733:CDS 50.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4.2:2447192-2447211 MS.gene04733:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4.2:2447193-2447212 None:intergenic 55.0%
CCAATCGCCACATCCCTTAC+AGG + chr4.2:2447340-2447359 MS.gene04733:CDS 55.0%
CCCTTAGACCTTGCCAAGGA+AGG - chr4.2:2447844-2447863 None:intergenic 55.0%
CCTGTAAGGGATGTGGCGAT+TGG - chr4.2:2447343-2447362 None:intergenic 55.0%
CGGTTACTTGCACCAGGAAC+TGG - chr4.2:2448936-2448955 None:intergenic 55.0%
GAAGGTTCAGCAGACAAGGC+AGG - chr4.2:2449600-2449619 None:intergenic 55.0%
GCATGACGGTTACTTGCACC+AGG - chr4.2:2448942-2448961 None:intergenic 55.0%
GCCTTCCTTGGCAAGGTCTA+AGG + chr4.2:2447840-2447859 MS.gene04733:intron 55.0%
TCCGATTCAGCCAACCTTGC+AGG - chr4.2:2449126-2449145 None:intergenic 55.0%
! AGGGATGTGGCGATTGGTTG+TGG - chr4.2:2447337-2447356 None:intergenic 55.0%
! GACTGACGGGCAAGTTCAAC+TGG - chr4.2:2447089-2447108 None:intergenic 55.0%
! TGCCCATGTCCAGTGTTGGA+AGG - chr4.2:2449618-2449637 None:intergenic 55.0%
! TGGTACCGAAGATCAGAGGG+AGG - chr4.2:2448641-2448660 None:intergenic 55.0%
ACTTGGTCGGAAGGCCAACC+AGG + chr4.2:2447042-2447061 MS.gene04733:CDS 60.0%
CCTTCCGACCAAGTCCCATG+AGG - chr4.2:2447036-2447055 None:intergenic 60.0%
CTTGCACCAGGAACTGGCTG+TGG - chr4.2:2448930-2448949 None:intergenic 60.0%
CTTGGCCGCAAGATCGGAAG+TGG + chr4.2:2446221-2446240 MS.gene04733:CDS 60.0%
GACGGGCAAGTTCAACTGGG+TGG - chr4.2:2447085-2447104 None:intergenic 60.0%
GCAGCCCTTAGACCTTGCCA+AGG - chr4.2:2447848-2447867 None:intergenic 60.0%
GGCTTGCCCATGTCCAGTGT+TGG - chr4.2:2449622-2449641 None:intergenic 60.0%
GTTGGCGGCAGCTACAAGCT+TGG + chr4.2:2446203-2446222 MS.gene04733:CDS 60.0%
! CCTCATGGGACTTGGTCGGA+AGG + chr4.2:2447033-2447052 MS.gene04733:CDS 60.0%
! CTTGGTGCAGGTGGCATTCC+AGG + chr4.2:2446702-2446721 MS.gene04733:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 2446191 2449704 2446191 ID=MS.gene04733
chr4.2 mRNA 2446191 2449704 2446191 ID=MS.gene04733.t1;Parent=MS.gene04733
chr4.2 exon 2446191 2446266 2446191 ID=MS.gene04733.t1.exon1;Parent=MS.gene04733.t1
chr4.2 CDS 2446191 2446266 2446191 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2446356 2446396 2446356 ID=MS.gene04733.t1.exon2;Parent=MS.gene04733.t1
chr4.2 CDS 2446356 2446396 2446356 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2446546 2446615 2446546 ID=MS.gene04733.t1.exon3;Parent=MS.gene04733.t1
chr4.2 CDS 2446546 2446615 2446546 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2446712 2446860 2446712 ID=MS.gene04733.t1.exon4;Parent=MS.gene04733.t1
chr4.2 CDS 2446712 2446860 2446712 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2446968 2447063 2446968 ID=MS.gene04733.t1.exon5;Parent=MS.gene04733.t1
chr4.2 CDS 2446968 2447063 2446968 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2447291 2447361 2447291 ID=MS.gene04733.t1.exon6;Parent=MS.gene04733.t1
chr4.2 CDS 2447291 2447361 2447291 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2447511 2447572 2447511 ID=MS.gene04733.t1.exon7;Parent=MS.gene04733.t1
chr4.2 CDS 2447511 2447572 2447511 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2447656 2447719 2447656 ID=MS.gene04733.t1.exon8;Parent=MS.gene04733.t1
chr4.2 CDS 2447656 2447719 2447656 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2447841 2447925 2447841 ID=MS.gene04733.t1.exon9;Parent=MS.gene04733.t1
chr4.2 CDS 2447841 2447925 2447841 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2448023 2448149 2448023 ID=MS.gene04733.t1.exon10;Parent=MS.gene04733.t1
chr4.2 CDS 2448023 2448149 2448023 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2448706 2448788 2448706 ID=MS.gene04733.t1.exon11;Parent=MS.gene04733.t1
chr4.2 CDS 2448706 2448788 2448706 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2448933 2448990 2448933 ID=MS.gene04733.t1.exon12;Parent=MS.gene04733.t1
chr4.2 CDS 2448933 2448990 2448933 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2449283 2449395 2449283 ID=MS.gene04733.t1.exon13;Parent=MS.gene04733.t1
chr4.2 CDS 2449283 2449395 2449283 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
chr4.2 exon 2449525 2449704 2449525 ID=MS.gene04733.t1.exon14;Parent=MS.gene04733.t1
chr4.2 CDS 2449525 2449704 2449525 ID=cds.MS.gene04733.t1;Parent=MS.gene04733.t1
Gene Sequence

>MS.gene04733

ATGGAGCGCATCGTTGGCGGCAGCTACAAGCTTGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATTTACCTCGGTGACTATCCTCTCTCTTCCGTTCTTCTTTTCATTCACAACGATTCTTTATTCTTATCACTCTTTTAACGTTTTCATTTCTCTCCGCAGCTACGCATATTGATACCTTCGAAATCGTCGCCGTCAAAATCGTAAGTTTCTGCTACGCTTTTCCTAATACTCACTCTCTAATTTGCATATTCCAATTTTACTTTTAATATTATCATTCAATTATCTATTATTTTGCTATTTTGCTTCTTAATCCACCCAAACTTAACGTTACATTGCTAATTCCTTACAGGAGAATAGTAAAACAAAGCATCCACAGTTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTATGCATTTTGCAATATTCAGTAGTTGTTTTTGTATTGTTCTAAGGAGGTAGAGGTTAGAGTCATGAGTTTGAGATTTCATGTTTCTTGGTGCAGGTGGCATTCCAGGCTTAAAATGGTTTGGCATAGATAGGGAGGATAACGTGCTTGCCATTGATTTACTTGGGCCTAGTCTTGAAGATCTTTTTGTTTATTGTGGAAGGAAGTTTTCGTTGAAGACTGTGTTAATGTTAGCTGATCAAATGGTATATGCTTACTGACTTGTATGTTTTTCACATAACTATATGCTTATTTCATATATTTGATGCTAATTCGTTCAATTTATCTCTTTTTTCATATTTTTTATGTGCAGATCACTAGAATTGAATATGTGCATTCTAAAGGATATATGCATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAGGCCAACCAGGTAACTATCTTATTATTGCCACCCAGTTGAACTTGCCCGTCAGTCAACTACTTGTTGCTATTTATTATGGTTTCACTTGTGTGTGTAATTTTGTTGTTCTTGTCACAACAACAACCAAGCCTTATTCCACTAAGTGGGGTCGGCTACATGGATCAAATTACACCATACAGTTCTATCATAAACCATATTTTGGTCCAATTCATAAATCTATGTGCTGTTTTTGTCAGGTTTACATAATTGATTTTGGGCTAGCAAAACGGTATCGGGAATCCACAACCAATCGCCACATCCCTTACAGGTAGTTCTACAGTGTCCATTTTTGTTTCATTCTTTTATTTTTGTTTTCATTTTCGACATTTATATCTTGTAAGTTGCATTCATCTAATTATGAATTATTTTCACATCCCCACCTCCTTAGTTTTTGTGACTAACAAATATAACCTACAGGGAGAACAAAAGCTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGGTAAGTCTTAAGTTAGAAGAATATATTAACCTTTCAGCTTGAATAAATGTTTGCACATTCTCATTCACTATATTTTTTTTTAGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTTAGAGGAAGGTATGGCATTCTGTTCCACACGATCTTTCCTGAAGTATTTTTTTCCAGAACCCGCTGTTTCTCAAGACAGTAATGAAATGTCATGACTTATAGTTTTAAATTTGTAACTATTTTTGTTTAGCCTTCCTTGGCAAGGTCTAAGGGCTGCAACAAAGAAACAGAAGTATGAAAAAATATGTCAGAAGAAGGTATCGACTCCTATCGAGGTCAGTATTTAAGCATTTATGTGTGTTGTGAAGCACCCCCTCCCCCCTGAATAAAGTAAAATAACTGGCATACTAATTTTTTTTCCCTTTCCAAAAGGTACTATGCAAATCTCATCCGGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACATTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCTTATTTAGAGACCTATTTGCTCGTGAAGGTGATTGTTTTTCATTTTTCAAATAATATAAAAAATGATTGAACCATATCATTTGATTGCTTTTGCAATTGTTTCTTGGGGGCATGGACATTATTTTCAACTTTTATAACTACAAATTTGTCGAATACACCCGAAGGTATACCTTGCTAACTTACATCTGCGAAATAATGAGTAGGTGTAAGCTAGCAAGTTATAACTAAAAATTTCACACACCTGAAGACGTAACTTGCTTACTTATCTGCCAAATTTTTAATTATATGGGTACAAAATGTTTTGATTTTGGTAACTGAAAACCTATGATTGGCTAAATTTAAGGAATAGTATTTTAGAGGAATAAAAAAATATCCTTCTTGATTTCAAAGAGGTCATGTGGCAAGGACATTGAGGACATTGAGGAGGTTAGATTAGGAGAAGTCCTCATTTTCTCAAGAATGGGGACTCAAATTTAATACATAGTTGTTAATTATTTTAAACACATGCATGGTTTTCCTCCCTCTGATCTTCGGTACCAAATATAACTTTTCCTCTCCTTCTGTTTTTCCTTTATGTATGTCAGGCTATGAATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCACAGAAAAATTTAGTTCAGCCTTCCTTATCTGTGAGTATATTTGATTTTTAGTCTCTTTGCATACATCTTTGAGCCTTCCTTGTCATTTATTTTGTGGGACTGAGGGGTTACTAATGGTTTTGCAACTTGAATCTTCCCTTGCTTCTGATAATATTAAAATTGTCTTTACCACAGCCAGTTCCTGGTGCAAGTAACCGTCATGCAGTAGCAATGGATGTTGACAATCATCAAGGTTTGTGTGCAGTGTCTTAAATAGGTTATGTGATTTTATAAATTATAGATGTTTCTTATCAAGAAGTAATAACGTCTGTTGGTTGCTAGAAAAAGTCATTGTAAAGGCAACAAAATTAAGTTTTGTTGACAACCTGCAAGGTTGGCTGAATCGGATCCTTTTGTGTCTTAGTCCTGTCTTAGAAGATGGATGGAATGACGTTTAGTTTTCTACTTTATGAATATTATTATTTTTTTAAAACAAAATATCTTGTTTGTTATGACCTAATTGGAAGATTTTCATGCATATTCAGGGCATGGGGAAGAGCGAATTAGATCAGGAAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTCAAATCACCAGCCGGTAGAAACTTGAGTTCTGACAATCCTCGTGACAAGAATGTAAGATATCTTGCCTTAATAAACTCACTCTTCCTGTGATGCAACATTGAATTTACTGTTCAGAGATCACACAACATTATGTCTAAAACTGAGTAGATCGGTATTTAGTAATTATTCTCTTTTTGGTAGATTTTTGGAGAAGCAAATATGGCCTCTGCTTCTTATGCTCCTGCTGGTACTTCAAAAAGGAACCCCTTAAACCCTGCCTTGTCTGCTGAACCTTCCAACACTGGACATGGGCAAGCCAGTAAAATTGGACCTTCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTTCCAAATGA
Protein sequence

>MS.gene04733.t1

MERIVGGSYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPGLKWFGIDREDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYMHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESTTNRHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLRAATKKQKYEKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQSQKNLVQPSLSPVPGASNRHAVAMDVDNHQGHGEERIRSGNATGSGVKVQFKSPAGRNLSSDNPRDKNIFGEANMASASYAPAGTSKRNPLNPALSAEPSNTGHGQASKIGPSSSWMSSLQRISSSK