AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049095

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049095.t1 MTR_8g102930 99.057 424 4 0 1 424 1 424 0.0 874
MS.gene049095.t1 MTR_6g087070 80.047 426 81 4 1 424 1 424 0.0 704
MS.gene049095.t1 MTR_3g110180 61.432 433 155 5 1 424 1 430 0.0 514
MS.gene049095.t1 MTR_4g126010 72.948 329 88 1 1 329 1 328 0.0 513
MS.gene049095.t1 MTR_3g110180 61.432 433 154 6 1 424 1 429 1.15e-180 510
MS.gene049095.t1 MTR_1g042280 65.063 395 117 8 1 385 2 385 1.63e-180 511
MS.gene049095.t1 MTR_2g099670 77.258 299 68 0 1 299 1 299 1.31e-179 509
MS.gene049095.t1 MTR_1g069720 77.181 298 68 0 1 298 1 298 1.05e-177 504
MS.gene049095.t1 MTR_1g004990 58.701 431 159 6 1 422 1 421 1.21e-176 500
MS.gene049095.t1 MTR_1g075870 65.079 378 111 6 1 366 2 370 3.34e-175 498
MS.gene049095.t1 MTR_8g018310 76.589 299 69 1 1 299 1 298 4.37e-175 498
MS.gene049095.t1 MTR_1g075870 72.240 317 85 2 1 314 2 318 1.51e-174 491
MS.gene049095.t1 MTR_7g097160 75.758 297 72 0 1 297 1 297 1.73e-174 496
MS.gene049095.t1 MTR_8g018310 76.589 299 69 1 1 299 1 298 8.47e-174 492
MS.gene049095.t1 MTR_2g039930 68.278 331 90 2 1 318 1 329 2.69e-171 488
MS.gene049095.t1 MTR_1g042280 75.899 278 64 2 40 314 9 286 5.84e-159 451
MS.gene049095.t1 MTR_0492s0030 61.496 361 129 4 1 352 1 360 5.84e-158 451
MS.gene049095.t1 MTR_0543s0020 61.496 361 129 4 1 352 1 360 5.84e-158 451
MS.gene049095.t1 MTR_1g075870 74.231 260 64 2 58 314 2 261 1.74e-145 416
MS.gene049095.t1 MTR_2g099670 78.571 238 51 0 62 299 10 247 6.37e-145 419
MS.gene049095.t1 MTR_2g039930 69.600 250 61 2 82 318 1 248 3.97e-130 380
MS.gene049095.t1 MTR_7g097160 78.571 154 33 0 144 297 25 178 1.28e-87 270
MS.gene049095.t1 MTR_7g006030 36.735 294 166 7 2 278 27 317 5.54e-55 192
MS.gene049095.t1 MTR_1g116210 38.276 290 162 8 2 278 109 394 1.89e-54 192
MS.gene049095.t1 MTR_7g085540 37.543 293 162 8 2 277 137 425 2.86e-53 189
MS.gene049095.t1 MTR_1g007150 36.918 279 163 6 5 273 118 393 1.08e-52 187
MS.gene049095.t1 MTR_3g110240 37.634 279 161 6 5 273 115 390 3.08e-52 186
MS.gene049095.t1 MTR_8g014050 34.752 282 162 6 9 273 128 404 1.19e-47 173
MS.gene049095.t1 MTR_7g116400 55.224 67 29 1 80 145 1 67 2.36e-17 77.0
MS.gene049095.t1 MTR_7g073520 35.938 128 68 4 109 236 252 365 1.09e-13 73.2
MS.gene049095.t1 MTR_7g113490 27.064 218 134 6 9 213 68 273 9.54e-13 70.5
MS.gene049095.t1 MTR_5g009830 30.233 215 134 6 5 213 63 267 2.14e-12 68.9
MS.gene049095.t1 MTR_5g009830 28.372 215 138 5 5 213 63 267 4.43e-12 68.2
MS.gene049095.t1 MTR_2g049790 27.632 228 130 9 3 214 17 225 1.16e-11 66.6
MS.gene049095.t1 MTR_4g132860 28.824 170 104 4 100 269 178 330 1.64e-11 65.9
MS.gene049095.t1 MTR_3g099920 29.167 216 127 8 8 213 18 217 2.69e-11 65.5
MS.gene049095.t1 MTR_8g099095 30.189 212 130 8 9 213 66 266 4.17e-11 65.1
MS.gene049095.t1 MTR_3g086530 24.895 237 136 8 9 214 93 318 5.01e-11 64.3
MS.gene049095.t1 MTR_5g007590 44.000 75 34 1 71 145 53 119 5.13e-11 60.5
MS.gene049095.t1 MTR_3g086530 24.895 237 136 8 9 214 93 318 6.51e-11 64.3
MS.gene049095.t1 MTR_5g092815 26.840 231 150 6 9 233 91 308 7.85e-11 63.9
MS.gene049095.t1 MTR_1g090917 27.966 236 155 8 9 236 51 279 8.07e-11 64.3
MS.gene049095.t1 MTR_1g090917 27.966 236 155 8 9 236 51 279 8.37e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049095.t1 AT4G28880 73.286 423 94 4 1 415 1 412 0.0 643
MS.gene049095.t1 AT4G28880 73.286 423 94 4 1 415 1 412 0.0 643
MS.gene049095.t1 AT4G28880 73.286 423 94 4 1 415 1 412 0.0 643
MS.gene049095.t1 AT4G28880 73.286 423 94 4 1 415 1 412 0.0 643
MS.gene049095.t1 AT4G28860 72.471 425 93 7 1 415 1 411 0.0 623
MS.gene049095.t1 AT4G28860 77.929 367 69 3 1 359 1 363 0.0 603
MS.gene049095.t1 AT5G57015 74.121 313 75 1 1 307 1 313 3.50e-178 504
MS.gene049095.t1 AT4G26100 70.326 337 94 3 1 333 1 335 2.40e-177 503
MS.gene049095.t1 AT1G72710 69.591 342 102 2 1 341 1 341 1.13e-175 499
MS.gene049095.t1 AT3G23340 58.491 424 158 5 1 420 1 410 3.17e-175 497
MS.gene049095.t1 AT2G19470 73.115 305 82 0 1 305 1 305 1.55e-174 495
MS.gene049095.t1 AT1G03930 73.737 297 78 0 1 297 1 297 8.40e-173 492
MS.gene049095.t1 AT5G44100 74.074 297 77 0 1 297 1 297 2.34e-172 491
MS.gene049095.t1 AT5G44100 74.074 297 77 0 1 297 1 297 2.34e-172 491
MS.gene049095.t1 AT4G28540 74.161 298 77 0 1 298 5 302 3.44e-172 491
MS.gene049095.t1 AT5G43320 56.849 438 168 6 1 419 1 436 1.75e-170 486
MS.gene049095.t1 AT1G04440 64.345 359 114 4 1 346 1 358 6.43e-169 482
MS.gene049095.t1 AT5G43320 74.411 297 76 0 1 297 1 297 2.24e-168 477
MS.gene049095.t1 AT5G43320 74.411 297 76 0 1 297 1 297 2.24e-168 477
MS.gene049095.t1 AT4G14340 57.044 433 164 7 1 423 7 427 1.11e-167 478
MS.gene049095.t1 AT4G14340 72.054 297 83 0 1 297 7 303 2.82e-165 469
MS.gene049095.t1 AT3G23340 55.896 424 155 6 1 420 1 396 1.57e-162 464
MS.gene049095.t1 AT4G08800 62.585 294 78 2 1 294 1 262 8.27e-136 391
MS.gene049095.t1 AT2G25760 38.112 286 160 5 5 273 101 386 1.14e-55 195
MS.gene049095.t1 AT3G13670 36.735 294 166 7 2 278 127 417 4.96e-55 194
MS.gene049095.t1 AT3G03940 38.225 293 160 8 2 277 130 418 2.60e-54 192
MS.gene049095.t1 AT2G25760 37.762 286 158 6 5 273 101 383 1.69e-53 189
MS.gene049095.t1 AT5G18190 37.288 295 164 8 2 279 120 410 1.08e-52 187
MS.gene049095.t1 AT5G18190 37.288 295 164 8 2 279 120 410 1.08e-52 187
MS.gene049095.t1 AT4G23650 30.374 214 133 6 8 215 77 280 1.23e-13 73.2
MS.gene049095.t1 AT3G06030 27.189 217 135 7 9 213 68 273 4.37e-13 71.6
MS.gene049095.t1 AT4G24400 27.381 252 131 9 7 236 7 228 1.45e-11 66.2
MS.gene049095.t1 AT3G23000 28.182 220 137 8 3 213 19 226 1.93e-11 65.9
MS.gene049095.t1 AT4G24400 27.381 252 131 9 7 236 7 228 2.16e-11 65.9
MS.gene049095.t1 AT4G13020 28.261 184 118 4 5 180 8 185 4.67e-11 64.7
MS.gene049095.t1 AT4G13020 28.261 184 118 4 5 180 8 185 4.68e-11 64.7
MS.gene049095.t1 AT3G10540 27.542 236 156 8 9 236 45 273 5.09e-11 64.7
MS.gene049095.t1 AT4G13020 28.723 188 115 5 1 180 1 177 5.42e-11 64.7
MS.gene049095.t1 AT4G13020 28.723 188 115 5 1 180 1 177 5.62e-11 64.3
MS.gene049095.t1 AT1G51660 26.772 254 155 9 12 255 82 314 6.04e-11 64.3
MS.gene049095.t1 AT4G13020 28.723 188 115 5 1 180 1 177 6.12e-11 64.3
MS.gene049095.t1 AT4G13020 28.723 188 115 5 1 180 1 177 6.14e-11 64.3
MS.gene049095.t1 AT3G49370 29.412 221 132 9 7 215 140 348 6.15e-11 64.7
MS.gene049095.t1 AT2G46700 25.571 219 141 6 6 213 140 347 7.22e-11 64.7
MS.gene049095.t1 AT2G41860 28.436 211 135 6 9 213 54 254 9.56e-11 63.9

Find 106 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGACAAGGCAGGGTTTA+AGG 0.145583 4.1:-2973455 None:intergenic
CTTGGTGCAGGTGGCATTCC+AGG 0.196530 4.1:+2970576 MS.gene049095:intron
CAGGTTTACATAATTGATTT+TGG 0.206036 4.1:+2971162 MS.gene049095:intron
GCCTTCCTTGGCAAGGTCTA+AGG 0.233807 4.1:+2971714 MS.gene049095:intron
TTTGATCAGCGGCCTGATTA+TGG 0.242360 4.1:+2971961 MS.gene049095:CDS
CATGGGCAAGCCAGTAAAAT+TGG 0.281681 4.1:+2973496 MS.gene049095:CDS
ATCAAATATACTCACAAATA+AGG 0.296479 4.1:-2972647 None:intergenic
AGGGAGAACAAAAGCTTAAC+AGG 0.296533 4.1:+2971383 MS.gene049095:intron
TCAGGAAATGCTACTGGTTC+TGG 0.311321 4.1:+2973172 MS.gene049095:CDS
GTGGCATTCCAGGCTTAAAA+TGG 0.316285 4.1:+2970586 MS.gene049095:CDS
TCTTTACCACAGCCAGTTCC+TGG 0.326468 4.1:+2972787 MS.gene049095:intron
GTACTTCTGTACTTCCTTAG+AGG 0.327253 4.1:+2971569 MS.gene049095:CDS
CTCCTGCTGGTACTTCAAAA+AGG 0.340286 4.1:+2973428 MS.gene049095:CDS
TAAAATGGTTTGGCATAGAT+AGG 0.351034 4.1:+2970601 MS.gene049095:CDS
GCAAAGTAGACGGGATGATT+TGG 0.359030 4.1:+2971532 MS.gene049095:CDS
TACCATGCTTGACATTCATT+TGG 0.370830 4.1:-2973563 None:intergenic
GAATGCCATACCTTCCTCTA+AGG 0.375079 4.1:-2971583 None:intergenic
GCAAGTTGCAATACTCATCT+TGG 0.379672 4.1:+2971419 MS.gene049095:CDS
TGATTGCTGATACTTTAAAA+TGG 0.383962 4.1:-2972602 None:intergenic
GCAGACAAGGCAGGGTTTAA+GGG 0.384050 4.1:-2973454 None:intergenic
CGGTTACTTGCACCAGGAAC+TGG 0.392308 4.1:-2972799 None:intergenic
GTGCTTGCTATCGATTTACT+TGG 0.395396 4.1:+2970633 MS.gene049095:CDS
CGCTTCAAGAATCCATAATC+AGG 0.403903 4.1:-2971973 None:intergenic
ATTCCAGGCTTAAAATGGTT+TGG 0.408195 4.1:+2970591 MS.gene049095:CDS
CCAATCGCCACATCCCTTAC+AGG 0.410603 4.1:+2971214 MS.gene049095:CDS
AGGGATGTGGCGATTGGTTG+TGG 0.418253 4.1:-2971208 None:intergenic
GATGACATCCAGCTACTTGA+AGG 0.432963 4.1:-2973520 None:intergenic
TGGGCTAGCAAAACGGTATC+GGG 0.438977 4.1:+2971182 MS.gene049095:CDS
AAGTCCCATGAGGAAGTTAT+CGG 0.450800 4.1:-2970897 None:intergenic
TGCAATACTCATCTTGGGAT+TGG 0.451960 4.1:+2971425 MS.gene049095:CDS
CAAGTTGCAATACTCATCTT+GGG 0.453718 4.1:+2971420 MS.gene049095:CDS
AAGTATGAAGCAAACTCTAC+TGG 0.459456 4.1:-2971916 None:intergenic
AAGCTCTACAATATTCTTCA+AGG 0.460096 4.1:+2970462 MS.gene049095:CDS
GAACCTTCCAACACTGGACA+TGG 0.461334 4.1:+2973478 MS.gene049095:CDS
AATCACCTTCACGAGCAAAT+AGG 0.462598 4.1:-2972008 None:intergenic
CCTTCCTTGGCAAGGTCTAA+GGG 0.464110 4.1:+2971715 MS.gene049095:CDS
TTGGGCTAGCAAAACGGTAT+CGG 0.464581 4.1:+2971181 MS.gene049095:CDS
ATTGAATATGTGCATTCTAA+AGG 0.468242 4.1:+2970851 MS.gene049095:CDS
TTCATGCATATTCAGGGCAT+GGG 0.474995 4.1:+2973134 MS.gene049095:intron
TCTGCTTCTTATGCTCCTGC+TGG 0.479546 4.1:+2973415 MS.gene049095:CDS
GTCAGAACTCAAGTTTCTAC+CGG 0.480554 4.1:-2973221 None:intergenic
TTGAAGAATATTGTAGAGCT+TGG 0.482642 4.1:-2970460 None:intergenic
AAATTGGACCTTCAAGTAGC+TGG 0.490531 4.1:+2973512 MS.gene049095:CDS
GAAGGTTCAGCAGACAAGGC+AGG 0.495629 4.1:-2973463 None:intergenic
TACAAGCTTGGCCGCAAGAT+CGG 0.497439 4.1:+2970085 MS.gene049095:CDS
TTGTTTAGCCTTCCTTGGCA+AGG 0.498778 4.1:+2971707 MS.gene049095:intron
TGCCCATGTCCAGTGTTGGA+AGG 0.501193 4.1:-2973481 None:intergenic
CTTGGCCGCAAGATCGGAAG+TGG 0.502438 4.1:+2970091 MS.gene049095:CDS
TGCTTGCTATCGATTTACTT+GGG 0.508590 4.1:+2970634 MS.gene049095:CDS
ATGTCAATGAGTGGCAGTAA+TGG 0.510047 4.1:-2971939 None:intergenic
GGGGAAGAGCGAATTAGATC+AGG 0.520235 4.1:+2973154 MS.gene049095:CDS
ACACTGTAGAACTACCTGTA+AGG 0.520596 4.1:-2971228 None:intergenic
AACATGGAGCGCATCGTTGG+CGG 0.520716 4.1:+2970058 None:intergenic
CCCTTAGACCTTGCCAAGGA+AGG 0.522544 4.1:-2971715 None:intergenic
ATTCTAAAGGATATTTGCAT+AGG 0.523357 4.1:+2970864 MS.gene049095:CDS
CAAAACATGGAGCGCATCGT+TGG 0.523862 4.1:+2970055 None:intergenic
AAGATCGGAAGTGGATCCTT+CGG 0.526716 4.1:+2970100 MS.gene049095:CDS
ACTTGGTCGGAAGGCCAACC+AGG 0.527701 4.1:+2970916 MS.gene049095:CDS
ATTAGATCAGGAAATGCTAC+TGG 0.537963 4.1:+2973166 MS.gene049095:CDS
GATAACTTCCTCATGGGACT+TGG 0.538752 4.1:+2970899 MS.gene049095:CDS
GTTGGCGGCAGCTACAAGCT+TGG 0.539526 4.1:+2970073 MS.gene049095:CDS
GTTGGAAGGTTCAGCAGACA+AGG 0.540905 4.1:-2973467 None:intergenic
GGCTTGCCCATGTCCAGTGT+TGG 0.544697 4.1:-2973485 None:intergenic
GCTTAAATACTGACCTCGAT+AGG 0.544757 4.1:-2971791 None:intergenic
TTCTAAAGGATATTTGCATA+GGG 0.547650 4.1:+2970865 MS.gene049095:CDS
ATGGATGTTGACAATCATCA+AGG 0.547757 4.1:+2972835 MS.gene049095:CDS
AAAATGGTTTGGCATAGATA+GGG 0.551435 4.1:+2970602 MS.gene049095:CDS
GTTAATGTTAGCTGATCAAA+TGG 0.552458 4.1:+2970713 MS.gene049095:CDS
TCTGCTGAACCTTCCAACAC+TGG 0.553667 4.1:+2973472 MS.gene049095:CDS
CAGACAAGGCAGGGTTTAAG+GGG 0.554251 4.1:-2973453 None:intergenic
AAGGTTCAGCAGACAAGGCA+GGG 0.560637 4.1:-2973462 None:intergenic
CCTCATGGGACTTGGTCGGA+AGG 0.562643 4.1:+2970907 MS.gene049095:CDS
TTCTGTACTTCCTTAGAGGA+AGG 0.567077 4.1:+2971573 MS.gene049095:CDS
CACTGTAGAACTACCTGTAA+GGG 0.569854 4.1:-2971227 None:intergenic
AGTCCCATGAGGAAGTTATC+GGG 0.570424 4.1:-2970896 None:intergenic
CGGGATGATTTGGAATCACT+AGG 0.571323 4.1:+2971542 MS.gene049095:CDS
TAAACCCGATAACTTCCTCA+TGG 0.571460 4.1:+2970892 MS.gene049095:CDS
AGAGACCTATTTGCTCGTGA+AGG 0.573148 4.1:+2972003 MS.gene049095:CDS
TAACCGTCATGCAGTAGCAA+TGG 0.576648 4.1:+2972816 MS.gene049095:CDS
AAACCCGATAACTTCCTCAT+GGG 0.582601 4.1:+2970893 MS.gene049095:CDS
TTTGACGGCGACGATTTCGA+AGG 0.585931 4.1:-2970245 None:intergenic
AACCTTCCAACACTGGACAT+GGG 0.589719 4.1:+2973479 MS.gene049095:CDS
AATATACTCACAAATAAGGA+AGG 0.590091 4.1:-2972643 None:intergenic
GTTCAGTTCAAATCACTAGC+CGG 0.592589 4.1:+2973202 MS.gene049095:CDS
AGGATCCACTTCCGATCTTG+CGG 0.593120 4.1:-2970096 None:intergenic
CCTGTAAGGGATGTGGCGAT+TGG 0.601182 4.1:-2971214 None:intergenic
ATGGTTTGGCATAGATAGGG+AGG 0.602024 4.1:+2970605 MS.gene049095:CDS
AGCAGGAGCATAAGAAGCAG+AGG 0.604520 4.1:-2973413 None:intergenic
AGAACTACCTGTAAGGGATG+TGG 0.605784 4.1:-2971221 None:intergenic
TAATAAGACAGTTACCTGGT+TGG 0.606730 4.1:-2970930 None:intergenic
GCATGACGGTTACTTGCACC+AGG 0.618520 4.1:-2972805 None:intergenic
TCCTTCGGTGAAATTTACCT+CGG 0.620087 4.1:+2970115 MS.gene049095:CDS
TCATGCATATTCAGGGCATG+GGG 0.625170 4.1:+2973135 MS.gene049095:intron
ACTCATTGACATTTGATCAG+CGG 0.629606 4.1:+2971950 MS.gene049095:CDS
ACCGAGGTAAATTTCACCGA+AGG 0.633578 4.1:-2970116 None:intergenic
ACTTCCTCATGGGACTTGGT+CGG 0.634675 4.1:+2970903 MS.gene049095:CDS
TGTCTTACATTCTTGTCACG+AGG 0.637274 4.1:-2973247 None:intergenic
GCATCCACAGTTGCTTTACG+AGG 0.642435 4.1:+2970437 MS.gene049095:CDS
GCAGCCCTTAGACCTTGCCA+AGG 0.650628 4.1:-2971719 None:intergenic
CTCTACAATATTCTTCAAGG+AGG 0.657190 4.1:+2970465 MS.gene049095:CDS
GCTGATCAAATGTCAATGAG+TGG 0.657329 4.1:-2971948 None:intergenic
CATCCATTGCTACTGCATGA+CGG 0.662544 4.1:-2972819 None:intergenic
GAAGGTATCGACTCCTATCG+AGG 0.668216 4.1:+2971778 MS.gene049095:CDS
GGGAGAACAAAAGCTTAACA+GGG 0.678093 4.1:+2971384 MS.gene049095:intron
TTGGCCTCGTAAAGCAACTG+TGG 0.692532 4.1:-2970441 None:intergenic
CCTTCCGACCAAGTCCCATG+AGG 0.721487 4.1:-2970907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATATTAAAAGTAAAAT+TGG - chr4.1:2970324-2970343 None:intergenic 10.0%
!! ATAAAAGAATGAAACAAAAA+TGG - chr4.1:2971254-2971273 None:intergenic 15.0%
!! TACCCATATAATTAAAAATT+TGG - chr4.1:2972269-2972288 None:intergenic 15.0%
!!! TGCCAAATTTTTAATTATAT+GGG + chr4.1:2972264-2972283 MS.gene049095:intron 15.0%
!!! TTTAGTAATTATTCTCTTTT+TGG + chr4.1:2973365-2973384 MS.gene049095:intron 15.0%
!! ATCAAATATACTCACAAATA+AGG - chr4.1:2972650-2972669 None:intergenic 20.0%
!! TTTAATATTATCAGAAGCAA+GGG - chr4.1:2972763-2972782 None:intergenic 20.0%
!!! AATTATTTTAAACACATGCA+TGG + chr4.1:2972477-2972496 MS.gene049095:intron 20.0%
!!! AATTTGATTTCGTTTTTGAT+TGG + chr4.1:2972578-2972597 MS.gene049095:CDS 20.0%
!!! AGGTTTACATAATTGATTTT+GGG + chr4.1:2971163-2971182 MS.gene049095:intron 20.0%
!!! AGTTATTTTACTTTATTCAG+GGG - chr4.1:2971846-2971865 None:intergenic 20.0%
!!! CAGTTATTTTACTTTATTCA+GGG - chr4.1:2971847-2971866 None:intergenic 20.0%
!!! CTGCCAAATTTTTAATTATA+TGG + chr4.1:2972263-2972282 MS.gene049095:intron 20.0%
!!! GGTATAAAATGTTTTGATTT+TGG + chr4.1:2972285-2972304 MS.gene049095:intron 20.0%
!!! TTCTATCATAAACCATATTT+TGG + chr4.1:2971108-2971127 MS.gene049095:intron 20.0%
!!! TTTAAGGAATAGTATTTTAG+AGG + chr4.1:2972334-2972353 MS.gene049095:intron 20.0%
!!! TTTTAATATTATCAGAAGCA+AGG - chr4.1:2972764-2972783 None:intergenic 20.0%
! AAACATTTATTCAAGCTGAA+AGG - chr4.1:2971479-2971498 None:intergenic 25.0%
! AATATACTCACAAATAAGGA+AGG - chr4.1:2972646-2972665 None:intergenic 25.0%
! ACTAACAAATATATCCTACA+GGG + chr4.1:2971364-2971383 MS.gene049095:intron 25.0%
! ATACATAAAGGAAAAACAGA+GGG - chr4.1:2972547-2972566 None:intergenic 25.0%
! ATTGAATATGTGCATTCTAA+AGG + chr4.1:2970851-2970870 MS.gene049095:CDS 25.0%
! CCTGAATAAAGTAAAATAAC+TGG + chr4.1:2971845-2971864 MS.gene049095:intron 25.0%
! TGAAAAAATATGTCAGAAGA+AGG + chr4.1:2971760-2971779 MS.gene049095:CDS 25.0%
! TTACATTGCTAATTCATTAC+AGG + chr4.1:2970398-2970417 MS.gene049095:intron 25.0%
! TTATGAATTGGACCAAAATA+TGG - chr4.1:2971123-2971142 None:intergenic 25.0%
! TTTGTTAGTCACAAAAACTA+AGG - chr4.1:2971353-2971372 None:intergenic 25.0%
!! AAGATTTTCATGCATATTCA+GGG + chr4.1:2973128-2973147 MS.gene049095:intron 25.0%
!! ATTCTAAAGGATATTTGCAT+AGG + chr4.1:2970864-2970883 MS.gene049095:CDS 25.0%
!! TGATTGCTGATACTTTAAAA+TGG - chr4.1:2972605-2972624 None:intergenic 25.0%
!! TTCTAAAGGATATTTGCATA+GGG + chr4.1:2970865-2970884 MS.gene049095:CDS 25.0%
!!! ATCTTTTTGTTTATTGTGGA+AGG + chr4.1:2970670-2970689 MS.gene049095:CDS 25.0%
!!! CAGGTTTACATAATTGATTT+TGG + chr4.1:2971162-2971181 MS.gene049095:intron 25.0%
!!! CCAGTTATTTTACTTTATTC+AGG - chr4.1:2971848-2971867 None:intergenic 25.0%
!!! CTACTTGTTGCTATTTATTA+TGG + chr4.1:2970985-2971004 MS.gene049095:intron 25.0%
!!! GAAGATCTTTTTGTTTATTG+TGG + chr4.1:2970666-2970685 MS.gene049095:CDS 25.0%
!!! GTTATTTTACTTTATTCAGG+GGG - chr4.1:2971845-2971864 None:intergenic 25.0%
!!! GTTGTTTTTGTATTGTTCTA+AGG + chr4.1:2970514-2970533 MS.gene049095:intron 25.0%
!!! TTATTTTACTTTATTCAGGG+GGG - chr4.1:2971844-2971863 None:intergenic 25.0%
!!! TTCCTTGTCATTTATTTTGT+GGG + chr4.1:2972700-2972719 MS.gene049095:intron 25.0%
!!! TTCTCTTTTTGGTAGATTTT+TGG + chr4.1:2973376-2973395 MS.gene049095:intron 25.0%
!!! TTTTTTTAGAGCAAAGTAGA+CGG + chr4.1:2971522-2971541 MS.gene049095:intron 25.0%
!!! TTTTTTTTTCCCTTTCCAAA+AGG + chr4.1:2971876-2971895 MS.gene049095:intron 25.0%
AAGCTCTACAATATTCTTCA+AGG + chr4.1:2970462-2970481 MS.gene049095:CDS 30.0%
ACAAAAAGATCTTCAAGACT+AGG - chr4.1:2970660-2970679 None:intergenic 30.0%
ATTATTGTCTTGAGAAACAG+CGG - chr4.1:2971648-2971667 None:intergenic 30.0%
CAAATTAGAGAGTGAGTATT+AGG - chr4.1:2970295-2970314 None:intergenic 30.0%
CACAAAATAAATGACAAGGA+AGG - chr4.1:2972701-2972720 None:intergenic 30.0%
CAGCACATAGATTTATGAAT+TGG - chr4.1:2971135-2971154 None:intergenic 30.0%
CATACATAAAGGAAAAACAG+AGG - chr4.1:2972548-2972567 None:intergenic 30.0%
CCTTAAATTTAGCCAATCAT+AGG - chr4.1:2972321-2972340 None:intergenic 30.0%
GACTAACAAATATATCCTAC+AGG + chr4.1:2971363-2971382 MS.gene049095:intron 30.0%
GCAAAAGCAATCAAATGATA+TGG - chr4.1:2972071-2972090 None:intergenic 30.0%
GCTAGAAAAAGTCATTGTAA+AGG + chr4.1:2972941-2972960 MS.gene049095:intron 30.0%
GTTAATGTTAGCTGATCAAA+TGG + chr4.1:2970713-2970732 MS.gene049095:CDS 30.0%
GTTGTGAATGAAAAGAAGAA+CGG - chr4.1:2970158-2970177 None:intergenic 30.0%
TAAATTCAATGTTGCATCAC+AGG - chr4.1:2973297-2973316 None:intergenic 30.0%
TATCCTTCTTGATTTCAAAG+AGG + chr4.1:2972367-2972386 MS.gene049095:intron 30.0%
TGCATGAAAATCTTCCAATT+AGG - chr4.1:2973122-2973141 None:intergenic 30.0%
TGGTTTATGATAGAACTGTA+TGG - chr4.1:2971103-2971122 None:intergenic 30.0%
TTGAAGAATATTGTAGAGCT+TGG - chr4.1:2970463-2970482 None:intergenic 30.0%
! AAAATGGTTTGGCATAGATA+GGG + chr4.1:2970602-2970621 MS.gene049095:CDS 30.0%
! AGCAATGTAACGTTAAGTTT+TGG - chr4.1:2970388-2970407 None:intergenic 30.0%
! ATGTCTAAAACTGAGTAGAT+CGG + chr4.1:2973340-2973359 MS.gene049095:intron 30.0%
! CCTATGATTGGCTAAATTTA+AGG + chr4.1:2972318-2972337 MS.gene049095:intron 30.0%
! GAAGATTTTCATGCATATTC+AGG + chr4.1:2973127-2973146 MS.gene049095:intron 30.0%
! GTTTTTCCTTTATGTATGTC+AGG + chr4.1:2972550-2972569 MS.gene049095:intron 30.0%
! TAAAATGGTTTGGCATAGAT+AGG + chr4.1:2970601-2970620 MS.gene049095:CDS 30.0%
!! AATGTAACGTTAAGTTTTGG+TGG - chr4.1:2970385-2970404 None:intergenic 30.0%
!! CTTGTTTGTTATGACCTAAT+TGG + chr4.1:2973105-2973124 MS.gene049095:intron 30.0%
!! GATTTTTGGAGAAGCAAATA+TGG + chr4.1:2973390-2973409 MS.gene049095:intron 30.0%
!! TATTTTTGTTTAGCCTTCCT+TGG + chr4.1:2971702-2971721 MS.gene049095:intron 30.0%
!! TGCTTTTGCAATTGTTTCTT+GGG + chr4.1:2972082-2972101 MS.gene049095:intron 30.0%
!! TTGCTTTTGCAATTGTTTCT+TGG + chr4.1:2972081-2972100 MS.gene049095:intron 30.0%
!!! CTTCCTTGTCATTTATTTTG+TGG + chr4.1:2972699-2972718 MS.gene049095:intron 30.0%
!!! GTTTTTGTATTGTTCTAAGG+AGG + chr4.1:2970517-2970536 MS.gene049095:intron 30.0%
!!! TTTTTTAGAGCAAAGTAGAC+GGG + chr4.1:2971523-2971542 MS.gene049095:intron 30.0%
AAGTATGAAGCAAACTCTAC+TGG - chr4.1:2971919-2971938 None:intergenic 35.0%
AAGTTAGCAAGGTATACCTT+CGG - chr4.1:2972158-2972177 None:intergenic 35.0%
ACATCTGCGAAATAATGAGT+AGG + chr4.1:2972178-2972197 MS.gene049095:intron 35.0%
ACTCATTGACATTTGATCAG+CGG + chr4.1:2971950-2971969 MS.gene049095:CDS 35.0%
ATACTTCAGGAAAGATCATG+TGG - chr4.1:2971613-2971632 None:intergenic 35.0%
ATGGATGTTGACAATCATCA+AGG + chr4.1:2972835-2972854 MS.gene049095:CDS 35.0%
ATTAGATCAGGAAATGCTAC+TGG + chr4.1:2973166-2973185 MS.gene049095:CDS 35.0%
ATTCCAGGCTTAAAATGGTT+TGG + chr4.1:2970591-2970610 MS.gene049095:CDS 35.0%
CAAGAAGTAATAACGTCTGT+TGG + chr4.1:2972916-2972935 MS.gene049095:intron 35.0%
CAAGTTGCAATACTCATCTT+GGG + chr4.1:2971420-2971439 MS.gene049095:CDS 35.0%
CAGGAAGAGTGAGTTTATTA+AGG - chr4.1:2973278-2973297 None:intergenic 35.0%
CTCTACAATATTCTTCAAGG+AGG + chr4.1:2970465-2970484 MS.gene049095:CDS 35.0%
GCAATAATAAGACAGTTACC+TGG - chr4.1:2970937-2970956 None:intergenic 35.0%
GGGAGAGGAAAAGTTATATT+TGG - chr4.1:2972527-2972546 None:intergenic 35.0%
GGTAACTGAAAACCTATGAT+TGG + chr4.1:2972306-2972325 MS.gene049095:intron 35.0%
GTCCCACAAAATAAATGACA+AGG - chr4.1:2972705-2972724 None:intergenic 35.0%
GTTAGTCACAAAAACTAAGG+AGG - chr4.1:2971350-2971369 None:intergenic 35.0%
TAATAAGACAGTTACCTGGT+TGG - chr4.1:2970933-2970952 None:intergenic 35.0%
TCATAGCCTGACATACATAA+AGG - chr4.1:2972559-2972578 None:intergenic 35.0%
TTATTGTCTTGAGAAACAGC+GGG - chr4.1:2971647-2971666 None:intergenic 35.0%
TTGATTTCAAAGAGGTCATG+TGG + chr4.1:2972375-2972394 MS.gene049095:intron 35.0%
TTGTGTGCAGTGTCTTAAAT+AGG + chr4.1:2972859-2972878 MS.gene049095:intron 35.0%
! ACTTGAAGGTCCAATTTTAC+TGG - chr4.1:2973509-2973528 None:intergenic 35.0%
! AGTCCTCATTTTCTCAAGAA+TGG + chr4.1:2972428-2972447 MS.gene049095:intron 35.0%
! GAGATTTGCATAGTACCTTT+TGG - chr4.1:2971894-2971913 None:intergenic 35.0%
! GCAGAAACTTACGATTTTGA+CGG - chr4.1:2970263-2970282 None:intergenic 35.0%
! GTCCTCATTTTCTCAAGAAT+GGG + chr4.1:2972429-2972448 MS.gene049095:intron 35.0%
! GTTTGAGATTTCGTGTTTCT+TGG + chr4.1:2970558-2970577 MS.gene049095:intron 35.0%
! TCCTCATTTTCTCAAGAATG+GGG + chr4.1:2972430-2972449 MS.gene049095:intron 35.0%
!! CTTTTGCAATTGTTTCTTGG+GGG + chr4.1:2972084-2972103 MS.gene049095:intron 35.0%
!! GCTTTTGCAATTGTTTCTTG+GGG + chr4.1:2972083-2972102 MS.gene049095:intron 35.0%
!! GGTTCTGGAAAAAATACTTC+AGG - chr4.1:2971626-2971645 None:intergenic 35.0%
!! TGACCTCTTTGAAATCAAGA+AGG - chr4.1:2972373-2972392 None:intergenic 35.0%
!! TGCATAGTACCTTTTGGAAA+GGG - chr4.1:2971888-2971907 None:intergenic 35.0%
!! TGCTTGCTATCGATTTACTT+GGG + chr4.1:2970634-2970653 MS.gene049095:CDS 35.0%
!! TTGCATAGTACCTTTTGGAA+AGG - chr4.1:2971889-2971908 None:intergenic 35.0%
!!! ATCTATGTGCTGTTTTTGTC+AGG + chr4.1:2971143-2971162 MS.gene049095:intron 35.0%
!!! ATTTATTTTGTGGGACTGAG+GGG + chr4.1:2972709-2972728 MS.gene049095:intron 35.0%
!!! CATTTATTTTGTGGGACTGA+GGG + chr4.1:2972708-2972727 MS.gene049095:intron 35.0%
!!! TCATTTATTTTGTGGGACTG+AGG + chr4.1:2972707-2972726 MS.gene049095:intron 35.0%
!!! TTGATTTTGGGCTAGCAAAA+CGG + chr4.1:2971175-2971194 MS.gene049095:CDS 35.0%
AAAAGAAGAACGGAAGAGAG+AGG - chr4.1:2970148-2970167 None:intergenic 40.0%
AAACCCGATAACTTCCTCAT+GGG + chr4.1:2970893-2970912 MS.gene049095:CDS 40.0%
AAATTGGACCTTCAAGTAGC+TGG + chr4.1:2973512-2973531 MS.gene049095:CDS 40.0%
AAGTCCCATGAGGAAGTTAT+CGG - chr4.1:2970900-2970919 None:intergenic 40.0%
AATCACCTTCACGAGCAAAT+AGG - chr4.1:2972011-2972030 None:intergenic 40.0%
AATTTGTCGAATACACCCGA+AGG + chr4.1:2972139-2972158 MS.gene049095:intron 40.0%
ACACTGTAGAACTACCTGTA+AGG - chr4.1:2971231-2971250 None:intergenic 40.0%
AGACAGGACTAAGACACAAA+AGG - chr4.1:2973016-2973035 None:intergenic 40.0%
AGCAACAAGTAGTTGACTGA+CGG - chr4.1:2970977-2970996 None:intergenic 40.0%
AGGGAGAACAAAAGCTTAAC+AGG + chr4.1:2971383-2971402 MS.gene049095:intron 40.0%
AGTAAGCAAGTTACGTCTTC+AGG - chr4.1:2972240-2972259 None:intergenic 40.0%
AGTCACAAAAACTAAGGAGG+TGG - chr4.1:2971347-2971366 None:intergenic 40.0%
AGTTAGCAAGGTATACCTTC+GGG - chr4.1:2972157-2972176 None:intergenic 40.0%
ATGTCAATGAGTGGCAGTAA+TGG - chr4.1:2971942-2971961 None:intergenic 40.0%
CACTGTAGAACTACCTGTAA+GGG - chr4.1:2971230-2971249 None:intergenic 40.0%
CGCTTCAAGAATCCATAATC+AGG - chr4.1:2971976-2971995 None:intergenic 40.0%
CTTAGTCCTGTCTTAGAAGA+TGG + chr4.1:2973023-2973042 MS.gene049095:intron 40.0%
GACATTGAGGAGGTTAGATT+AGG + chr4.1:2972402-2972421 MS.gene049095:intron 40.0%
GCAAGTTGCAATACTCATCT+TGG + chr4.1:2971419-2971438 MS.gene049095:CDS 40.0%
GCTGATCAAATGTCAATGAG+TGG - chr4.1:2971951-2971970 None:intergenic 40.0%
GCTTAAATACTGACCTCGAT+AGG - chr4.1:2971794-2971813 None:intergenic 40.0%
GGGAGAACAAAAGCTTAACA+GGG + chr4.1:2971384-2971403 MS.gene049095:intron 40.0%
GTACTTCTGTACTTCCTTAG+AGG + chr4.1:2971569-2971588 MS.gene049095:CDS 40.0%
GTCACAAAAACTAAGGAGGT+GGG - chr4.1:2971346-2971365 None:intergenic 40.0%
GTCAGAACTCAAGTTTCTAC+CGG - chr4.1:2973224-2973243 None:intergenic 40.0%
GTTCAGTTCAAATCACTAGC+CGG + chr4.1:2973202-2973221 MS.gene049095:CDS 40.0%
TAAACCCGATAACTTCCTCA+TGG + chr4.1:2970892-2970911 MS.gene049095:CDS 40.0%
TAAAGGAAAAACAGAGGGAG+AGG - chr4.1:2972542-2972561 None:intergenic 40.0%
TACTTCCTTAGAGGAAGGTA+TGG + chr4.1:2971578-2971597 MS.gene049095:intron 40.0%
TCACAAAAACTAAGGAGGTG+GGG - chr4.1:2971345-2971364 None:intergenic 40.0%
TCCCCATTCTTGAGAAAATG+AGG - chr4.1:2972434-2972453 None:intergenic 40.0%
TCCTTCGGTGAAATTTACCT+CGG + chr4.1:2970115-2970134 MS.gene049095:CDS 40.0%
TGCAATACTCATCTTGGGAT+TGG + chr4.1:2971425-2971444 MS.gene049095:CDS 40.0%
TGTCTTACATTCTTGTCACG+AGG - chr4.1:2973250-2973269 None:intergenic 40.0%
TTCATGCATATTCAGGGCAT+GGG + chr4.1:2973134-2973153 MS.gene049095:intron 40.0%
TTCGCAGATGTAAGTTAGCA+AGG - chr4.1:2972169-2972188 None:intergenic 40.0%
TTCTGTACTTCCTTAGAGGA+AGG + chr4.1:2971573-2971592 MS.gene049095:CDS 40.0%
TTTACTTTATTCAGGGGGGA+GGG - chr4.1:2971840-2971859 None:intergenic 40.0%
TTTCATGCATATTCAGGGCA+TGG + chr4.1:2973133-2973152 MS.gene049095:intron 40.0%
! ATGCCAAACCATTTTAAGCC+TGG - chr4.1:2970597-2970616 None:intergenic 40.0%
! GTTTTTCTCCCTCTGATCTT+CGG + chr4.1:2972499-2972518 MS.gene049095:intron 40.0%
! TAAGCTTTTGTTCTCCCTGT+AGG - chr4.1:2971381-2971400 None:intergenic 40.0%
! TTTTACTTTATTCAGGGGGG+AGG - chr4.1:2971841-2971860 None:intergenic 40.0%
!! AAGCCTTATTCCACTAAGTG+GGG + chr4.1:2971054-2971073 MS.gene049095:intron 40.0%
!! CAAGCCTTATTCCACTAAGT+GGG + chr4.1:2971053-2971072 MS.gene049095:intron 40.0%
!! GTATTGTTCTAAGGAGGTAG+TGG + chr4.1:2970523-2970542 MS.gene049095:intron 40.0%
!! GTGCTTGCTATCGATTTACT+TGG + chr4.1:2970633-2970652 MS.gene049095:CDS 40.0%
!! TTCCATCCATCTTCTAAGAC+AGG - chr4.1:2973032-2973051 None:intergenic 40.0%
!!! AGTTTTGTTGACAACCTGCA+AGG + chr4.1:2972975-2972994 MS.gene049095:intron 40.0%
!!! TTCCTTTTTGAAGTACCAGC+AGG - chr4.1:2973433-2973452 None:intergenic 40.0%
AACCTTCCAACACTGGACAT+GGG + chr4.1:2973479-2973498 MS.gene049095:CDS 45.0%
AAGATCGGAAGTGGATCCTT+CGG + chr4.1:2970100-2970119 MS.gene049095:CDS 45.0%
ACCGAGGTAAATTTCACCGA+AGG - chr4.1:2970119-2970138 None:intergenic 45.0%
AGAACTACCTGTAAGGGATG+TGG - chr4.1:2971224-2971243 None:intergenic 45.0%
AGAGACCTATTTGCTCGTGA+AGG + chr4.1:2972003-2972022 MS.gene049095:CDS 45.0%
AGTCCCATGAGGAAGTTATC+GGG - chr4.1:2970899-2970918 None:intergenic 45.0%
CATCCATTGCTACTGCATGA+CGG - chr4.1:2972822-2972841 None:intergenic 45.0%
CATGGGCAAGCCAGTAAAAT+TGG + chr4.1:2973496-2973515 MS.gene049095:CDS 45.0%
CCACTTAGTGGAATAAGGCT+TGG - chr4.1:2971055-2971074 None:intergenic 45.0%
CTCCTGCTGGTACTTCAAAA+AGG + chr4.1:2973428-2973447 MS.gene049095:CDS 45.0%
CTTATTCCACTAAGTGGGGT+CGG + chr4.1:2971058-2971077 MS.gene049095:intron 45.0%
GAATGCCATACCTTCCTCTA+AGG - chr4.1:2971586-2971605 None:intergenic 45.0%
GATAACTTCCTCATGGGACT+TGG + chr4.1:2970899-2970918 MS.gene049095:CDS 45.0%
GATGACATCCAGCTACTTGA+AGG - chr4.1:2973523-2973542 None:intergenic 45.0%
GCAAAGTAGACGGGATGATT+TGG + chr4.1:2971532-2971551 MS.gene049095:CDS 45.0%
GCAACAAGTAGTTGACTGAC+GGG - chr4.1:2970976-2970995 None:intergenic 45.0%
GGTATCAATATGCGTAGCTG+CGG - chr4.1:2970227-2970246 None:intergenic 45.0%
GTCCTGTCTTAGAAGATGGA+TGG + chr4.1:2973027-2973046 MS.gene049095:intron 45.0%
GTGGCATTCCAGGCTTAAAA+TGG + chr4.1:2970586-2970605 MS.gene049095:CDS 45.0%
TAACCGTCATGCAGTAGCAA+TGG + chr4.1:2972816-2972835 MS.gene049095:CDS 45.0%
TCATGCATATTCAGGGCATG+GGG + chr4.1:2973135-2973154 MS.gene049095:intron 45.0%
TTACTTTATTCAGGGGGGAG+GGG - chr4.1:2971839-2971858 None:intergenic 45.0%
TTCAAAGAGGTCATGTGGCA+AGG + chr4.1:2972380-2972399 MS.gene049095:intron 45.0%
TTGTTGACAACCTGCAAGGT+TGG + chr4.1:2972979-2972998 MS.gene049095:intron 45.0%
TTTGATCAGCGGCCTGATTA+TGG + chr4.1:2971961-2971980 MS.gene049095:CDS 45.0%
! ATGGTTTGGCATAGATAGGG+AGG + chr4.1:2970605-2970624 MS.gene049095:CDS 45.0%
! CGGGATGATTTGGAATCACT+AGG + chr4.1:2971542-2971561 MS.gene049095:CDS 45.0%
! GATTTCGTGTTTCTTGGTGC+AGG + chr4.1:2970564-2970583 MS.gene049095:intron 45.0%
! TTGTTTAGCCTTCCTTGGCA+AGG + chr4.1:2971707-2971726 MS.gene049095:intron 45.0%
!! ATTTGGTGCCGAAGATCAGA+GGG - chr4.1:2972510-2972529 None:intergenic 45.0%
!! CCAAGCCTTATTCCACTAAG+TGG + chr4.1:2971052-2971071 MS.gene049095:intron 45.0%
!! TATTTGGTGCCGAAGATCAG+AGG - chr4.1:2972511-2972530 None:intergenic 45.0%
!! TCAGGAAATGCTACTGGTTC+TGG + chr4.1:2973172-2973191 MS.gene049095:CDS 45.0%
!! TTGGGCTAGCAAAACGGTAT+CGG + chr4.1:2971181-2971200 MS.gene049095:CDS 45.0%
AAGAGAGAGGATAGTCACCG+AGG - chr4.1:2970135-2970154 None:intergenic 50.0%
AAGGTTCAGCAGACAAGGCA+GGG - chr4.1:2973465-2973484 None:intergenic 50.0%
AGCAGACAAGGCAGGGTTTA+AGG - chr4.1:2973458-2973477 None:intergenic 50.0%
AGGATCCACTTCCGATCTTG+CGG - chr4.1:2970099-2970118 None:intergenic 50.0%
ATGTGGCAAGGACATTGAGG+AGG + chr4.1:2972392-2972411 MS.gene049095:intron 50.0%
CAGACAAGGCAGGGTTTAAG+GGG - chr4.1:2973456-2973475 None:intergenic 50.0%
CCTTCCTTGGCAAGGTCTAA+GGG + chr4.1:2971715-2971734 MS.gene049095:CDS 50.0%
CGACCCCACTTAGTGGAATA+AGG - chr4.1:2971060-2971079 None:intergenic 50.0%
GAACCTTCCAACACTGGACA+TGG + chr4.1:2973478-2973497 MS.gene049095:CDS 50.0%
GCAGACAAGGCAGGGTTTAA+GGG - chr4.1:2973457-2973476 None:intergenic 50.0%
GGGGAAGAGCGAATTAGATC+AGG + chr4.1:2973154-2973173 MS.gene049095:CDS 50.0%
GTCATGTGGCAAGGACATTG+AGG + chr4.1:2972389-2972408 MS.gene049095:intron 50.0%
GTTGGAAGGTTCAGCAGACA+AGG - chr4.1:2973470-2973489 None:intergenic 50.0%
TACAAGCTTGGCCGCAAGAT+CGG + chr4.1:2970085-2970104 MS.gene049095:CDS 50.0%
TACTTTATTCAGGGGGGAGG+GGG - chr4.1:2971838-2971857 None:intergenic 50.0%
TCTGCTGAACCTTCCAACAC+TGG + chr4.1:2973472-2973491 MS.gene049095:CDS 50.0%
TCTGCTTCTTATGCTCCTGC+TGG + chr4.1:2973415-2973434 MS.gene049095:CDS 50.0%
TCTTTACCACAGCCAGTTCC+TGG + chr4.1:2972787-2972806 MS.gene049095:intron 50.0%
TGGGACTGAGGGGTTACTAA+TGG + chr4.1:2972719-2972738 MS.gene049095:intron 50.0%
TTGGCCTCGTAAAGCAACTG+TGG - chr4.1:2970444-2970463 None:intergenic 50.0%
TTTGACGGCGACGATTTCGA+AGG - chr4.1:2970248-2970267 None:intergenic 50.0%
! ACCTGCAAGGTTGGCTGAAT+CGG + chr4.1:2972988-2973007 MS.gene049095:intron 50.0%
! ACTGACGGGCAAGTTCAACT+GGG - chr4.1:2970962-2970981 None:intergenic 50.0%
! ACTTCCTCATGGGACTTGGT+CGG + chr4.1:2970903-2970922 MS.gene049095:CDS 50.0%
! AGCAGGAGCATAAGAAGCAG+AGG - chr4.1:2973416-2973435 None:intergenic 50.0%
! GCAATTGTTTCTTGGGGGCA+TGG + chr4.1:2972089-2972108 MS.gene049095:intron 50.0%
! GCATCCACAGTTGCTTTACG+AGG + chr4.1:2970437-2970456 MS.gene049095:CDS 50.0%
! TCTTGAGAAACAGCGGGTTC+TGG - chr4.1:2971641-2971660 None:intergenic 50.0%
! TTCGTGTTTCTTGGTGCAGG+TGG + chr4.1:2970567-2970586 MS.gene049095:intron 50.0%
!! GAAGGTATCGACTCCTATCG+AGG + chr4.1:2971778-2971797 MS.gene049095:CDS 50.0%
!! TGGGCTAGCAAAACGGTATC+GGG + chr4.1:2971182-2971201 MS.gene049095:CDS 50.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4.1:2971066-2971085 MS.gene049095:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4.1:2971067-2971086 None:intergenic 55.0%
CCAATCGCCACATCCCTTAC+AGG + chr4.1:2971214-2971233 MS.gene049095:CDS 55.0%
CCCTTAGACCTTGCCAAGGA+AGG - chr4.1:2971718-2971737 None:intergenic 55.0%
CCTGTAAGGGATGTGGCGAT+TGG - chr4.1:2971217-2971236 None:intergenic 55.0%
CGGTTACTTGCACCAGGAAC+TGG - chr4.1:2972802-2972821 None:intergenic 55.0%
GAAGGTTCAGCAGACAAGGC+AGG - chr4.1:2973466-2973485 None:intergenic 55.0%
GCATGACGGTTACTTGCACC+AGG - chr4.1:2972808-2972827 None:intergenic 55.0%
GCCTTCCTTGGCAAGGTCTA+AGG + chr4.1:2971714-2971733 MS.gene049095:intron 55.0%
TCCGATTCAGCCAACCTTGC+AGG - chr4.1:2972992-2973011 None:intergenic 55.0%
! AGGGATGTGGCGATTGGTTG+TGG - chr4.1:2971211-2971230 None:intergenic 55.0%
! GACTGACGGGCAAGTTCAAC+TGG - chr4.1:2970963-2970982 None:intergenic 55.0%
! TGCCCATGTCCAGTGTTGGA+AGG - chr4.1:2973484-2973503 None:intergenic 55.0%
ACTTGGTCGGAAGGCCAACC+AGG + chr4.1:2970916-2970935 MS.gene049095:CDS 60.0%
CCTTCCGACCAAGTCCCATG+AGG - chr4.1:2970910-2970929 None:intergenic 60.0%
CTTGCACCAGGAACTGGCTG+TGG - chr4.1:2972796-2972815 None:intergenic 60.0%
CTTGGCCGCAAGATCGGAAG+TGG + chr4.1:2970091-2970110 MS.gene049095:CDS 60.0%
GACGGGCAAGTTCAACTGGG+TGG - chr4.1:2970959-2970978 None:intergenic 60.0%
GCAGCCCTTAGACCTTGCCA+AGG - chr4.1:2971722-2971741 None:intergenic 60.0%
GGCTTGCCCATGTCCAGTGT+TGG - chr4.1:2973488-2973507 None:intergenic 60.0%
GTTGGCGGCAGCTACAAGCT+TGG + chr4.1:2970073-2970092 MS.gene049095:CDS 60.0%
! CCTCATGGGACTTGGTCGGA+AGG + chr4.1:2970907-2970926 MS.gene049095:CDS 60.0%
! CTTGGTGCAGGTGGCATTCC+AGG + chr4.1:2970576-2970595 MS.gene049095:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 2970061 2973570 2970061 ID=MS.gene049095
chr4.1 mRNA 2970061 2973570 2970061 ID=MS.gene049095.t1;Parent=MS.gene049095
chr4.1 exon 2970061 2970136 2970061 ID=MS.gene049095.t1.exon1;Parent=MS.gene049095.t1
chr4.1 CDS 2970061 2970136 2970061 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2970230 2970270 2970230 ID=MS.gene049095.t1.exon2;Parent=MS.gene049095.t1
chr4.1 CDS 2970230 2970270 2970230 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2970420 2970489 2970420 ID=MS.gene049095.t1.exon3;Parent=MS.gene049095.t1
chr4.1 CDS 2970420 2970489 2970420 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2970586 2970734 2970586 ID=MS.gene049095.t1.exon4;Parent=MS.gene049095.t1
chr4.1 CDS 2970586 2970734 2970586 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2970842 2970937 2970842 ID=MS.gene049095.t1.exon5;Parent=MS.gene049095.t1
chr4.1 CDS 2970842 2970937 2970842 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2971165 2971235 2971165 ID=MS.gene049095.t1.exon6;Parent=MS.gene049095.t1
chr4.1 CDS 2971165 2971235 2971165 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2971385 2971446 2971385 ID=MS.gene049095.t1.exon7;Parent=MS.gene049095.t1
chr4.1 CDS 2971385 2971446 2971385 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2971531 2971594 2971531 ID=MS.gene049095.t1.exon8;Parent=MS.gene049095.t1
chr4.1 CDS 2971531 2971594 2971531 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2971715 2971799 2971715 ID=MS.gene049095.t1.exon9;Parent=MS.gene049095.t1
chr4.1 CDS 2971715 2971799 2971715 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2971898 2972024 2971898 ID=MS.gene049095.t1.exon10;Parent=MS.gene049095.t1
chr4.1 CDS 2971898 2972024 2971898 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2972572 2972654 2972572 ID=MS.gene049095.t1.exon11;Parent=MS.gene049095.t1
chr4.1 CDS 2972572 2972654 2972572 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2972799 2972856 2972799 ID=MS.gene049095.t1.exon12;Parent=MS.gene049095.t1
chr4.1 CDS 2972799 2972856 2972799 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2973149 2973261 2973149 ID=MS.gene049095.t1.exon13;Parent=MS.gene049095.t1
chr4.1 CDS 2973149 2973261 2973149 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1 exon 2973391 2973570 2973391 ID=MS.gene049095.t1.exon14;Parent=MS.gene049095.t1
chr4.1 CDS 2973391 2973570 2973391 ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
Gene Sequence

>MS.gene049095

ATGGAGCGCATCGTTGGCGGCAGCTACAAGCTTGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATTTACCTCGGTGACTATCCTCTCTCTTCCGTTCTTCTTTTCATTCACAACGATTCTTTCTTTATTCTTATCACTCTTTTAACGTTTTCATTTCTCTCCGCAGCTACGCATATTGATACCTTCGAAATCGTCGCCGTCAAAATCGTAAGTTTCTGCTACGCTTTTCCTAATACTCACTCTCTAATTTGCATATTCCAATTTTACTTTTAATATTATCATTCAATTATCTATTATTTTGCTAATTTGCTTCTTAATCCACCAAAACTTAACGTTACATTGCTAATTCATTACAGGAGAATAGTAAAACAAAGCATCCACAGTTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTATGCATTTTGCAATATTCAGTAGTTGTTTTTGTATTGTTCTAAGGAGGTAGTGGTTAGAGTCATGAGTTTGAGATTTCGTGTTTCTTGGTGCAGGTGGCATTCCAGGCTTAAAATGGTTTGGCATAGATAGGGAGGATAACGTGCTTGCTATCGATTTACTTGGGCCTAGTCTTGAAGATCTTTTTGTTTATTGTGGAAGGAAGTTTTCGTTGAAGACTGTGTTAATGTTAGCTGATCAAATGGTATATGCTTACTGACTTGTATGTTTTTCACAAAACTACATGCTTATTTCATATATTTGATGCTAATTCGTTCAATTTATCTCTTTTTCATATTTTTTTATGTGCAGATCACTAGAATTGAATATGTGCATTCTAAAGGATATTTGCATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAGGCCAACCAGGTAACTGTCTTATTATTGCCACCCAGTTGAACTTGCCCGTCAGTCAACTACTTGTTGCTATTTATTATGGTTTCACTTGTGTGTGTAATTTTGTTGTTCTTGTCACAACAACAACCAAGCCTTATTCCACTAAGTGGGGTCGGCTACATGGATCAAATTACACCATACAGTTCTATCATAAACCATATTTTGGTCCAATTCATAAATCTATGTGCTGTTTTTGTCAGGTTTACATAATTGATTTTGGGCTAGCAAAACGGTATCGGGAATCCACAACCAATCGCCACATCCCTTACAGGTAGTTCTACAGTGTCCATTTTTGTTTCATTCTTTTATTTTTGTTTTCATTTTCGACATTTATATCTTGTAAGTTGCATTCATCTAATTATGAATTATTTTCACATCCCCACCTCCTTAGTTTTTGTGACTAACAAATATATCCTACAGGGAGAACAAAAGCTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGGTAAGTCTTAAGTTAGAAGAATATATTAACCTTTCAGCTTGAATAAATGTTTACACATTCTCATTCACTATATTTTTTTTTTAGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTTAGAGGAAGGTATGGCATTCTGTTCCACATGATCTTTCCTGAAGTATTTTTTCCAGAACCCGCTGTTTCTCAAGACAATAATGAAATGTCATGACTTATAGTTTTAAATTTGTAACTATTTTTGTTTAGCCTTCCTTGGCAAGGTCTAAGGGCTGCAACAAAGAAACAGAAGTATGAAAAAATATGTCAGAAGAAGGTATCGACTCCTATCGAGGTCAGTATTTAAGCATTTATGTGTGTTGTGAAGCACCCCCTCCCCCCTGAATAAAGTAAAATAACTGGCATACTAATTTTTTTTTCCCTTTCCAAAAGGTACTATGCAAATCTCATCCAGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACATTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCTTATTTAGAGACCTATTTGCTCGTGAAGGTGATTGTTTTTCATTTTTCAAATAATATAAAAAACGATTGAACCATATCATTTGATTGCTTTTGCAATTGTTTCTTGGGGGCATGGACATTATTTTCAACTTTTATAACTACAAATTTGTCGAATACACCCGAAGGTATACCTTGCTAACTTACATCTGCGAAATAATGAGTAGGTGTAAGCTAGCAAGTTATAACTAAAAATTTCACACACCTGAAGACGTAACTTGCTTACTTATCTGCCAAATTTTTAATTATATGGGTATAAAATGTTTTGATTTTGGTAACTGAAAACCTATGATTGGCTAAATTTAAGGAATAGTATTTTAGAGGAATAAAAAAATATCCTTCTTGATTTCAAAGAGGTCATGTGGCAAGGACATTGAGGAGGTTAGATTAGGAGAAGTCCTCATTTTCTCAAGAATGGGGACTCAAATTTAATACATAGTTGTTAATTATTTTAAACACATGCATGGTTTTTCTCCCTCTGATCTTCGGCACCAAATATAACTTTTCCTCTCCCTCTGTTTTTCCTTTATGTATGTCAGGCTATGAATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCACAGAAGAATTTAGTTCAGCCTTCCTTATTTGTGAGTATATTTGATTTTTAGTCTCTGTGCATACATCTTTGAGCCTTCCTTGTCATTTATTTTGTGGGACTGAGGGGTTACTAATGGTTTTGCAACTTGAATCTTCCCTTGCTTCTGATAATATTAAAATTGTCTTTACCACAGCCAGTTCCTGGTGCAAGTAACCGTCATGCAGTAGCAATGGATGTTGACAATCATCAAGGTTTGTGTGCAGTGTCTTAAATAGGTTATGTGATTTTATAAATTATAGATGTTTCTTATCAAGAAGTAATAACGTCTGTTGGTTGCTAGAAAAAGTCATTGTAAAGGCAACAAAATTAAGTTTTGTTGACAACCTGCAAGGTTGGCTGAATCGGATCCTTTTGTGTCTTAGTCCTGTCTTAGAAGATGGATGGAATGACGTTTAGTTTTCTACTTTATGAATATTATTATTTTTTTAAAACAAAATATCTTGTTTGTTATGACCTAATTGGAAGATTTTCATGCATATTCAGGGCATGGGGAAGAGCGAATTAGATCAGGAAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTCAAATCACTAGCCGGTAGAAACTTGAGTTCTGACAATCCTCGTGACAAGAATGTAAGACATCTTGCCTTAATAAACTCACTCTTCCTGTGATGCAACATTGAATTTACTGTTCAGAGATCACACAACATTATGTCTAAAACTGAGTAGATCGGTATTTAGTAATTATTCTCTTTTTGGTAGATTTTTGGAGAAGCAAATATGGCCTCTGCTTCTTATGCTCCTGCTGGTACTTCAAAAAGGAACCCCTTAAACCCTGCCTTGTCTGCTGAACCTTCCAACACTGGACATGGGCAAGCCAGTAAAATTGGACCTTCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTTCCAAATGA
Protein sequence

>MS.gene049095.t1

MERIVGGSYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPGLKWFGIDREDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESTTNRHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLRAATKKQKYEKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQSQKNLVQPSLFPVPGASNRHAVAMDVDNHQGHGEERIRSGNATGSGVKVQFKSLAGRNLSSDNPRDKNIFGEANMASASYAPAGTSKRNPLNPALSAEPSNTGHGQASKIGPSSSWMSSLQRISSSK