AlfalfaGEDB | MS.gene049095

M. sativa cultivar XinJiangDaYe / MS.gene049095

KEGG: K08960
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049095.t1	XP_003630752.2	99.1	424	4	0	1	424	1	424	4.30E-243	850.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049095.t1	Q93Z18	73.3	423	94	4	1	415	1	412	3.4e-180	632.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049095.t1	G7L860	99.1	424	4	0	1	424	1	424	3.1e-243	850.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene012266	MS.gene049095	PPI
MS.gene015777	MS.gene049095	PPI
MS.gene01884	MS.gene049095	PPI
MS.gene04733	MS.gene049095	PPI
MS.gene049052	MS.gene049095	PPI
MS.gene049095	MS.gene047966	PPI
MS.gene049095	MS.gene00843	PPI
MS.gene049095	MS.gene066046	PPI
MS.gene049095	MS.gene051853	PPI
MS.gene049095	MS.gene015841	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049095.t1	MTR_8g102930	99.057	424	4	0	1	424	1	424	0.0	874
MS.gene049095.t1	MTR_6g087070	80.047	426	81	4	1	424	1	424	0.0	704
MS.gene049095.t1	MTR_3g110180	61.432	433	155	5	1	424	1	430	0.0	514
MS.gene049095.t1	MTR_4g126010	72.948	329	88	1	1	329	1	328	0.0	513
MS.gene049095.t1	MTR_3g110180	61.432	433	154	6	1	424	1	429	1.15e-180	510
MS.gene049095.t1	MTR_1g042280	65.063	395	117	8	1	385	2	385	1.63e-180	511
MS.gene049095.t1	MTR_2g099670	77.258	299	68	0	1	299	1	299	1.31e-179	509
MS.gene049095.t1	MTR_1g069720	77.181	298	68	0	1	298	1	298	1.05e-177	504
MS.gene049095.t1	MTR_1g004990	58.701	431	159	6	1	422	1	421	1.21e-176	500
MS.gene049095.t1	MTR_1g075870	65.079	378	111	6	1	366	2	370	3.34e-175	498

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049095.t1	AT4G28880	73.286	423	94	4	1	415	1	412	0.0	643
MS.gene049095.t1	AT4G28880	73.286	423	94	4	1	415	1	412	0.0	643
MS.gene049095.t1	AT4G28880	73.286	423	94	4	1	415	1	412	0.0	643
MS.gene049095.t1	AT4G28880	73.286	423	94	4	1	415	1	412	0.0	643
MS.gene049095.t1	AT4G28860	72.471	425	93	7	1	415	1	411	0.0	623
MS.gene049095.t1	AT4G28860	77.929	367	69	3	1	359	1	363	0.0	603
MS.gene049095.t1	AT5G57015	74.121	313	75	1	1	307	1	313	3.50e-178	504
MS.gene049095.t1	AT4G26100	70.326	337	94	3	1	333	1	335	2.40e-177	503
MS.gene049095.t1	AT1G72710	69.591	342	102	2	1	341	1	341	1.13e-175	499
MS.gene049095.t1	AT3G23340	58.491	424	158	5	1	420	1	410	3.17e-175	497

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Find 106 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTTGGCATAGATA+GGG	0.551435	4.1:+2970602	MS.gene049095:CDS
AAACCCGATAACTTCCTCAT+GGG	0.582601	4.1:+2970893	MS.gene049095:CDS
AAATTGGACCTTCAAGTAGC+TGG	0.490531	4.1:+2973512	MS.gene049095:CDS
AACATGGAGCGCATCGTTGG+CGG	0.520716	4.1:+2970058	None:intergenic
AACCTTCCAACACTGGACAT+GGG	0.589719	4.1:+2973479	MS.gene049095:CDS
AAGATCGGAAGTGGATCCTT+CGG	0.526716	4.1:+2970100	MS.gene049095:CDS
AAGCTCTACAATATTCTTCA+AGG	0.460096	4.1:+2970462	MS.gene049095:CDS
AAGGTTCAGCAGACAAGGCA+GGG	0.560637	4.1:-2973462	None:intergenic
AAGTATGAAGCAAACTCTAC+TGG	0.459456	4.1:-2971916	None:intergenic
AAGTCCCATGAGGAAGTTAT+CGG	0.450800	4.1:-2970897	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTCTACAATATTCTTCA+AGG	+	chr4.1:2970462-2970481	MS.gene049095:CDS	30.0%
ACAAAAAGATCTTCAAGACT+AGG	-	chr4.1:2970660-2970679	None:intergenic	30.0%
ATTATTGTCTTGAGAAACAG+CGG	-	chr4.1:2971648-2971667	None:intergenic	30.0%
CAAATTAGAGAGTGAGTATT+AGG	-	chr4.1:2970295-2970314	None:intergenic	30.0%
CACAAAATAAATGACAAGGA+AGG	-	chr4.1:2972701-2972720	None:intergenic	30.0%
CAGCACATAGATTTATGAAT+TGG	-	chr4.1:2971135-2971154	None:intergenic	30.0%
CATACATAAAGGAAAAACAG+AGG	-	chr4.1:2972548-2972567	None:intergenic	30.0%
CCTTAAATTTAGCCAATCAT+AGG	-	chr4.1:2972321-2972340	None:intergenic	30.0%
GACTAACAAATATATCCTAC+AGG	+	chr4.1:2971363-2971382	MS.gene049095:intron	30.0%
GCAAAAGCAATCAAATGATA+TGG	-	chr4.1:2972071-2972090	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	2970061	2973570	2970061	ID=MS.gene049095
chr4.1	mRNA	2970061	2973570	2970061	ID=MS.gene049095.t1;Parent=MS.gene049095
chr4.1	exon	2970061	2970136	2970061	ID=MS.gene049095.t1.exon1;Parent=MS.gene049095.t1
chr4.1	CDS	2970061	2970136	2970061	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2970230	2970270	2970230	ID=MS.gene049095.t1.exon2;Parent=MS.gene049095.t1
chr4.1	CDS	2970230	2970270	2970230	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2970420	2970489	2970420	ID=MS.gene049095.t1.exon3;Parent=MS.gene049095.t1
chr4.1	CDS	2970420	2970489	2970420	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2970586	2970734	2970586	ID=MS.gene049095.t1.exon4;Parent=MS.gene049095.t1
chr4.1	CDS	2970586	2970734	2970586	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2970842	2970937	2970842	ID=MS.gene049095.t1.exon5;Parent=MS.gene049095.t1
chr4.1	CDS	2970842	2970937	2970842	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2971165	2971235	2971165	ID=MS.gene049095.t1.exon6;Parent=MS.gene049095.t1
chr4.1	CDS	2971165	2971235	2971165	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2971385	2971446	2971385	ID=MS.gene049095.t1.exon7;Parent=MS.gene049095.t1
chr4.1	CDS	2971385	2971446	2971385	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2971531	2971594	2971531	ID=MS.gene049095.t1.exon8;Parent=MS.gene049095.t1
chr4.1	CDS	2971531	2971594	2971531	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2971715	2971799	2971715	ID=MS.gene049095.t1.exon9;Parent=MS.gene049095.t1
chr4.1	CDS	2971715	2971799	2971715	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2971898	2972024	2971898	ID=MS.gene049095.t1.exon10;Parent=MS.gene049095.t1
chr4.1	CDS	2971898	2972024	2971898	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2972572	2972654	2972572	ID=MS.gene049095.t1.exon11;Parent=MS.gene049095.t1
chr4.1	CDS	2972572	2972654	2972572	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2972799	2972856	2972799	ID=MS.gene049095.t1.exon12;Parent=MS.gene049095.t1
chr4.1	CDS	2972799	2972856	2972799	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2973149	2973261	2973149	ID=MS.gene049095.t1.exon13;Parent=MS.gene049095.t1
chr4.1	CDS	2973149	2973261	2973149	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1
chr4.1	exon	2973391	2973570	2973391	ID=MS.gene049095.t1.exon14;Parent=MS.gene049095.t1
chr4.1	CDS	2973391	2973570	2973391	ID=cds.MS.gene049095.t1;Parent=MS.gene049095.t1

Gene Sequence

>MS.gene049095

ATGGAGCGCATCGTTGGCGGCAGCTACAAGCTTGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATTTACCTCGGTGACTATCCTCTCTCTTCCGTTCTTCTTTTCATTCACAACGATTCTTTCTTTATTCTTATCACTCTTTTAACGTTTTCATTTCTCTCCGCAGCTACGCATATTGATACCTTCGAAATCGTCGCCGTCAAAATCGTAAGTTTCTGCTACGCTTTTCCTAATACTCACTCTCTAATTTGCATATTCCAATTTTACTTTTAATATTATCATTCAATTATCTATTATTTTGCTAATTTGCTTCTTAATCCACCAAAACTTAACGTTACATTGCTAATTCATTACAGGAGAATAGTAAAACAAAGCATCCACAGTTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTATGCATTTTGCAATATTCAGTAGTTGTTTTTGTATTGTTCTAAGGAGGTAGTGGTTAGAGTCATGAGTTTGAGATTTCGTGTTTCTTGGTGCAGGTGGCATTCCAGGCTTAAAATGGTTTGGCATAGATAGGGAGGATAACGTGCTTGCTATCGATTTACTTGGGCCTAGTCTTGAAGATCTTTTTGTTTATTGTGGAAGGAAGTTTTCGTTGAAGACTGTGTTAATGTTAGCTGATCAAATGGTATATGCTTACTGACTTGTATGTTTTTCACAAAACTACATGCTTATTTCATATATTTGATGCTAATTCGTTCAATTTATCTCTTTTTCATATTTTTTTATGTGCAGATCACTAGAATTGAATATGTGCATTCTAAAGGATATTTGCATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAGGCCAACCAGGTAACTGTCTTATTATTGCCACCCAGTTGAACTTGCCCGTCAGTCAACTACTTGTTGCTATTTATTATGGTTTCACTTGTGTGTGTAATTTTGTTGTTCTTGTCACAACAACAACCAAGCCTTATTCCACTAAGTGGGGTCGGCTACATGGATCAAATTACACCATACAGTTCTATCATAAACCATATTTTGGTCCAATTCATAAATCTATGTGCTGTTTTTGTCAGGTTTACATAATTGATTTTGGGCTAGCAAAACGGTATCGGGAATCCACAACCAATCGCCACATCCCTTACAGGTAGTTCTACAGTGTCCATTTTTGTTTCATTCTTTTATTTTTGTTTTCATTTTCGACATTTATATCTTGTAAGTTGCATTCATCTAATTATGAATTATTTTCACATCCCCACCTCCTTAGTTTTTGTGACTAACAAATATATCCTACAGGGAGAACAAAAGCTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGGTAAGTCTTAAGTTAGAAGAATATATTAACCTTTCAGCTTGAATAAATGTTTACACATTCTCATTCACTATATTTTTTTTTTAGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTTAGAGGAAGGTATGGCATTCTGTTCCACATGATCTTTCCTGAAGTATTTTTTCCAGAACCCGCTGTTTCTCAAGACAATAATGAAATGTCATGACTTATAGTTTTAAATTTGTAACTATTTTTGTTTAGCCTTCCTTGGCAAGGTCTAAGGGCTGCAACAAAGAAACAGAAGTATGAAAAAATATGTCAGAAGAAGGTATCGACTCCTATCGAGGTCAGTATTTAAGCATTTATGTGTGTTGTGAAGCACCCCCTCCCCCCTGAATAAAGTAAAATAACTGGCATACTAATTTTTTTTTCCCTTTCCAAAAGGTACTATGCAAATCTCATCCAGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACATTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCTTATTTAGAGACCTATTTGCTCGTGAAGGTGATTGTTTTTCATTTTTCAAATAATATAAAAAACGATTGAACCATATCATTTGATTGCTTTTGCAATTGTTTCTTGGGGGCATGGACATTATTTTCAACTTTTATAACTACAAATTTGTCGAATACACCCGAAGGTATACCTTGCTAACTTACATCTGCGAAATAATGAGTAGGTGTAAGCTAGCAAGTTATAACTAAAAATTTCACACACCTGAAGACGTAACTTGCTTACTTATCTGCCAAATTTTTAATTATATGGGTATAAAATGTTTTGATTTTGGTAACTGAAAACCTATGATTGGCTAAATTTAAGGAATAGTATTTTAGAGGAATAAAAAAATATCCTTCTTGATTTCAAAGAGGTCATGTGGCAAGGACATTGAGGAGGTTAGATTAGGAGAAGTCCTCATTTTCTCAAGAATGGGGACTCAAATTTAATACATAGTTGTTAATTATTTTAAACACATGCATGGTTTTTCTCCCTCTGATCTTCGGCACCAAATATAACTTTTCCTCTCCCTCTGTTTTTCCTTTATGTATGTCAGGCTATGAATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCACAGAAGAATTTAGTTCAGCCTTCCTTATTTGTGAGTATATTTGATTTTTAGTCTCTGTGCATACATCTTTGAGCCTTCCTTGTCATTTATTTTGTGGGACTGAGGGGTTACTAATGGTTTTGCAACTTGAATCTTCCCTTGCTTCTGATAATATTAAAATTGTCTTTACCACAGCCAGTTCCTGGTGCAAGTAACCGTCATGCAGTAGCAATGGATGTTGACAATCATCAAGGTTTGTGTGCAGTGTCTTAAATAGGTTATGTGATTTTATAAATTATAGATGTTTCTTATCAAGAAGTAATAACGTCTGTTGGTTGCTAGAAAAAGTCATTGTAAAGGCAACAAAATTAAGTTTTGTTGACAACCTGCAAGGTTGGCTGAATCGGATCCTTTTGTGTCTTAGTCCTGTCTTAGAAGATGGATGGAATGACGTTTAGTTTTCTACTTTATGAATATTATTATTTTTTTAAAACAAAATATCTTGTTTGTTATGACCTAATTGGAAGATTTTCATGCATATTCAGGGCATGGGGAAGAGCGAATTAGATCAGGAAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTCAAATCACTAGCCGGTAGAAACTTGAGTTCTGACAATCCTCGTGACAAGAATGTAAGACATCTTGCCTTAATAAACTCACTCTTCCTGTGATGCAACATTGAATTTACTGTTCAGAGATCACACAACATTATGTCTAAAACTGAGTAGATCGGTATTTAGTAATTATTCTCTTTTTGGTAGATTTTTGGAGAAGCAAATATGGCCTCTGCTTCTTATGCTCCTGCTGGTACTTCAAAAAGGAACCCCTTAAACCCTGCCTTGTCTGCTGAACCTTCCAACACTGGACATGGGCAAGCCAGTAAAATTGGACCTTCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTTCCAAATGA

Protein sequence

>MS.gene049095.t1

MERIVGGSYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPGLKWFGIDREDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESTTNRHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLRAATKKQKYEKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQSQKNLVQPSLFPVPGASNRHAVAMDVDNHQGHGEERIRSGNATGSGVKVQFKSLAGRNLSSDNPRDKNIFGEANMASASYAPAGTSKRNPLNPALSAEPSNTGHGQASKIGPSSSWMSSLQRISSSK