AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05889

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05889.t1 MTR_8g102930 99.528 424 2 0 1 424 1 424 0.0 880
MS.gene05889.t1 MTR_6g087070 80.282 426 80 4 1 424 1 424 0.0 707
MS.gene05889.t1 MTR_3g110180 61.663 433 154 5 1 424 1 430 0.0 517
MS.gene05889.t1 MTR_4g126010 68.698 361 111 2 1 360 1 360 0.0 516
MS.gene05889.t1 MTR_3g110180 61.663 433 153 6 1 424 1 429 0.0 513
MS.gene05889.t1 MTR_2g099670 63.706 394 132 5 1 385 1 392 0.0 513
MS.gene05889.t1 MTR_1g042280 64.781 389 128 4 1 385 2 385 0.0 512
MS.gene05889.t1 MTR_1g069720 77.181 298 68 0 1 298 1 298 9.42e-178 504
MS.gene05889.t1 MTR_1g004990 58.605 430 161 5 1 422 1 421 2.83e-177 501
MS.gene05889.t1 MTR_1g075870 65.160 376 114 5 1 366 2 370 8.82e-176 499
MS.gene05889.t1 MTR_8g018310 76.589 299 69 1 1 299 1 298 3.33e-175 498
MS.gene05889.t1 MTR_1g075870 72.240 317 85 2 1 314 2 318 5.77e-175 492
MS.gene05889.t1 MTR_7g097160 75.758 297 72 0 1 297 1 297 2.41e-174 496
MS.gene05889.t1 MTR_8g018310 76.589 299 69 1 1 299 1 298 7.12e-174 492
MS.gene05889.t1 MTR_2g039930 57.303 445 155 6 1 423 1 432 2.58e-172 491
MS.gene05889.t1 MTR_1g042280 75.899 278 64 2 40 314 9 286 1.83e-159 452
MS.gene05889.t1 MTR_0492s0030 61.219 361 130 4 1 352 1 360 2.39e-157 449
MS.gene05889.t1 MTR_0543s0020 61.219 361 130 4 1 352 1 360 2.39e-157 449
MS.gene05889.t1 MTR_1g075870 74.231 260 64 2 58 314 2 261 4.96e-146 417
MS.gene05889.t1 MTR_2g099670 62.162 333 115 5 62 385 10 340 5.08e-146 422
MS.gene05889.t1 MTR_2g039930 58.951 324 109 4 82 386 1 319 3.95e-131 383
MS.gene05889.t1 MTR_7g097160 78.571 154 33 0 144 297 25 178 9.33e-88 270
MS.gene05889.t1 MTR_7g006030 36.735 294 166 7 2 278 27 317 4.42e-55 192
MS.gene05889.t1 MTR_1g116210 38.276 290 162 8 2 278 109 394 2.15e-54 192
MS.gene05889.t1 MTR_7g085540 37.543 293 162 8 2 277 137 425 2.05e-53 189
MS.gene05889.t1 MTR_1g007150 36.918 279 163 6 5 273 118 393 8.86e-53 187
MS.gene05889.t1 MTR_3g110240 37.634 279 161 6 5 273 115 390 2.42e-52 186
MS.gene05889.t1 MTR_8g014050 34.752 282 162 6 9 273 128 404 1.19e-47 173
MS.gene05889.t1 MTR_7g116400 55.224 67 29 1 80 145 1 67 2.31e-17 77.4
MS.gene05889.t1 MTR_7g073520 35.385 130 70 4 107 236 250 365 1.12e-13 73.2
MS.gene05889.t1 MTR_7g113490 27.064 218 134 6 9 213 68 273 7.99e-13 70.9
MS.gene05889.t1 MTR_5g009830 30.233 215 134 6 5 213 63 267 1.90e-12 68.9
MS.gene05889.t1 MTR_5g009830 28.372 215 138 5 5 213 63 267 3.95e-12 68.2
MS.gene05889.t1 MTR_2g049790 27.632 228 130 9 3 214 17 225 1.13e-11 66.6
MS.gene05889.t1 MTR_4g132860 28.824 170 104 4 100 269 178 330 2.00e-11 65.5
MS.gene05889.t1 MTR_3g099920 29.167 216 127 8 8 213 18 217 2.86e-11 65.5
MS.gene05889.t1 MTR_8g099095 30.189 212 130 8 9 213 66 266 3.50e-11 65.5
MS.gene05889.t1 MTR_5g007590 44.000 75 34 1 71 145 53 119 4.93e-11 60.5
MS.gene05889.t1 MTR_3g086530 24.895 237 136 8 9 214 93 318 4.97e-11 64.3
MS.gene05889.t1 MTR_3g086530 24.895 237 136 8 9 214 93 318 5.60e-11 64.3
MS.gene05889.t1 MTR_1g090917 27.966 236 155 8 9 236 51 279 6.18e-11 64.7
MS.gene05889.t1 MTR_1g090917 27.966 236 155 8 9 236 51 279 7.39e-11 64.3
MS.gene05889.t1 MTR_5g092815 26.840 231 150 6 9 233 91 308 7.44e-11 63.9
MS.gene05889.t1 MTR_3g086530 25.110 227 128 8 9 204 93 308 9.61e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05889.t1 AT4G28880 73.286 423 94 4 1 415 1 412 0.0 643
MS.gene05889.t1 AT4G28880 73.286 423 94 4 1 415 1 412 0.0 643
MS.gene05889.t1 AT4G28880 73.286 423 94 4 1 415 1 412 0.0 643
MS.gene05889.t1 AT4G28880 73.286 423 94 4 1 415 1 412 0.0 643
MS.gene05889.t1 AT4G28860 72.471 425 93 7 1 415 1 411 0.0 624
MS.gene05889.t1 AT4G28860 77.929 367 69 3 1 359 1 363 0.0 603
MS.gene05889.t1 AT5G57015 73.270 318 79 1 1 312 1 318 1.37e-178 505
MS.gene05889.t1 AT4G26100 70.326 337 94 3 1 333 1 335 4.97e-178 504
MS.gene05889.t1 AT1G72710 69.591 342 102 2 1 341 1 341 9.46e-176 499
MS.gene05889.t1 AT3G23340 58.491 424 158 5 1 420 1 410 7.69e-175 496
MS.gene05889.t1 AT2G19470 59.653 404 131 4 1 389 1 387 1.89e-174 495
MS.gene05889.t1 AT1G03930 73.737 297 78 0 1 297 1 297 5.37e-173 493
MS.gene05889.t1 AT5G44100 74.074 297 77 0 1 297 1 297 1.51e-172 491
MS.gene05889.t1 AT5G44100 74.074 297 77 0 1 297 1 297 1.51e-172 491
MS.gene05889.t1 AT4G28540 74.161 298 77 0 1 298 5 302 2.50e-172 491
MS.gene05889.t1 AT5G43320 56.849 438 168 6 1 419 1 436 5.38e-171 488
MS.gene05889.t1 AT1G04440 64.345 359 114 4 1 346 1 358 8.26e-169 482
MS.gene05889.t1 AT4G14340 57.044 433 164 7 1 423 7 427 2.53e-168 480
MS.gene05889.t1 AT5G43320 74.411 297 76 0 1 297 1 297 3.15e-168 476
MS.gene05889.t1 AT5G43320 74.411 297 76 0 1 297 1 297 3.15e-168 476
MS.gene05889.t1 AT4G14340 68.111 323 97 2 1 318 7 328 1.20e-165 470
MS.gene05889.t1 AT3G23340 55.896 424 155 6 1 420 1 396 3.52e-162 463
MS.gene05889.t1 AT4G08800 62.585 294 78 2 1 294 1 262 7.66e-136 391
MS.gene05889.t1 AT2G25760 38.112 286 160 5 5 273 101 386 9.36e-56 196
MS.gene05889.t1 AT3G13670 36.735 294 166 7 2 278 127 417 4.22e-55 194
MS.gene05889.t1 AT3G03940 38.225 293 160 8 2 277 130 418 2.76e-54 192
MS.gene05889.t1 AT2G25760 37.762 286 158 6 5 273 101 383 1.45e-53 189
MS.gene05889.t1 AT5G18190 37.288 295 164 8 2 279 120 410 9.98e-53 187
MS.gene05889.t1 AT5G18190 37.288 295 164 8 2 279 120 410 9.98e-53 187
MS.gene05889.t1 AT4G23650 30.374 214 133 6 8 215 77 280 1.17e-13 73.2
MS.gene05889.t1 AT3G06030 27.189 217 135 7 9 213 68 273 3.82e-13 71.6
MS.gene05889.t1 AT4G24400 27.381 252 131 9 7 236 7 228 1.61e-11 66.2
MS.gene05889.t1 AT3G23000 28.182 220 137 8 3 213 19 226 1.76e-11 66.2
MS.gene05889.t1 AT4G24400 27.381 252 131 9 7 236 7 228 2.01e-11 65.9
MS.gene05889.t1 AT4G13020 28.261 184 118 4 5 180 8 185 4.05e-11 65.1
MS.gene05889.t1 AT4G13020 28.261 184 118 4 5 180 8 185 4.06e-11 65.1
MS.gene05889.t1 AT4G13020 28.723 188 115 5 1 180 1 177 4.45e-11 64.7
MS.gene05889.t1 AT4G13020 28.723 188 115 5 1 180 1 177 4.62e-11 64.7
MS.gene05889.t1 AT3G10540 27.542 236 156 8 9 236 45 273 4.65e-11 65.1
MS.gene05889.t1 AT4G13020 28.723 188 115 5 1 180 1 177 4.82e-11 64.7
MS.gene05889.t1 AT1G51660 26.772 254 155 9 12 255 82 314 5.04e-11 64.3
MS.gene05889.t1 AT3G49370 29.412 221 132 9 7 215 140 348 5.16e-11 65.1
MS.gene05889.t1 AT4G13020 28.723 188 115 5 1 180 1 177 5.69e-11 64.3
MS.gene05889.t1 AT2G46700 25.571 219 141 6 6 213 140 347 6.79e-11 64.7

Find 107 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGACAAGGCAGGGTTTA+AGG 0.145583 4.4:-3303180 None:intergenic
CTTGGTGCAGGTGGCATTCC+AGG 0.196530 4.4:+3300301 MS.gene05889:intron
CAGGTTTACATAATTGATTT+TGG 0.206036 4.4:+3300887 MS.gene05889:intron
GCCTTCCTTGGCAAGGTCTA+AGG 0.233807 4.4:+3301439 MS.gene05889:intron
TTTGATCAGCGGCCTGATTA+TGG 0.242360 4.4:+3301686 MS.gene05889:CDS
CATGGGCAAGCCAGTAAAAT+TGG 0.281681 4.4:+3303221 MS.gene05889:CDS
AGGGAGAACAAAAGCTTAAC+AGG 0.296533 4.4:+3301108 MS.gene05889:intron
TCAGGAAATGCTACTGGTTC+TGG 0.311321 4.4:+3302897 MS.gene05889:CDS
GTGGCATTCCAGGCTTAAAA+TGG 0.316285 4.4:+3300311 MS.gene05889:CDS
TCTTTACCACAGCCAGTTCC+TGG 0.326468 4.4:+3302512 MS.gene05889:intron
GTACTTCTGTACTTCCTTAG+AGG 0.327253 4.4:+3301294 MS.gene05889:CDS
CTCCTGCTGGTACTTCAAAA+AGG 0.340286 4.4:+3303153 MS.gene05889:CDS
TAAAATGGTTTGGCATAGAT+AGG 0.351034 4.4:+3300326 MS.gene05889:CDS
GCAAAGTAGACGGGATGATT+TGG 0.359030 4.4:+3301257 MS.gene05889:CDS
TACCATGCTTGACATTCATT+TGG 0.370830 4.4:-3303288 None:intergenic
GAATGCCATACCTTCCTCTA+AGG 0.375079 4.4:-3301308 None:intergenic
GCAAGTTGCAATACTCATCT+TGG 0.379672 4.4:+3301144 MS.gene05889:CDS
TGATTGCTGATACTTTAAAA+TGG 0.383962 4.4:-3302327 None:intergenic
GCAGACAAGGCAGGGTTTAA+GGG 0.384050 4.4:-3303179 None:intergenic
CGGTTACTTGCACCAGGAAC+TGG 0.392308 4.4:-3302524 None:intergenic
GTGCTTGCTATCGATTTACT+TGG 0.395396 4.4:+3300358 MS.gene05889:CDS
CGCTTCAAGAATCCATAATC+AGG 0.403903 4.4:-3301698 None:intergenic
ATTCCAGGCTTAAAATGGTT+TGG 0.408195 4.4:+3300316 MS.gene05889:CDS
CCAATCGCCACATCCCTTAC+AGG 0.410603 4.4:+3300939 MS.gene05889:CDS
AGGGATGTGGCGATTGGTTG+TGG 0.418253 4.4:-3300933 None:intergenic
GATGACATCCAGCTACTTGA+AGG 0.432963 4.4:-3303245 None:intergenic
TGGGCTAGCAAAACGGTATC+GGG 0.438977 4.4:+3300907 MS.gene05889:CDS
AAGTCCCATGAGGAAGTTAT+CGG 0.450800 4.4:-3300622 None:intergenic
TGCAATACTCATCTTGGGAT+TGG 0.451960 4.4:+3301150 MS.gene05889:CDS
CAAGTTGCAATACTCATCTT+GGG 0.453718 4.4:+3301145 MS.gene05889:CDS
AAGTATGAAGCAAACTCTAC+TGG 0.459456 4.4:-3301641 None:intergenic
AAGCTCTACAATATTCTTCA+AGG 0.460096 4.4:+3300187 MS.gene05889:CDS
GAACCTTCCAACACTGGACA+TGG 0.461334 4.4:+3303203 MS.gene05889:CDS
AATCACCTTCACGAGCAAAT+AGG 0.462598 4.4:-3301733 None:intergenic
CCTTCCTTGGCAAGGTCTAA+GGG 0.464110 4.4:+3301440 MS.gene05889:CDS
TTGGGCTAGCAAAACGGTAT+CGG 0.464581 4.4:+3300906 MS.gene05889:CDS
ATTGAATATGTGCATTCTAA+AGG 0.468242 4.4:+3300576 MS.gene05889:CDS
TTCATGCATATTCAGGGCAT+GGG 0.474995 4.4:+3302859 MS.gene05889:intron
TCTGCTTCTTATGCTCCTGC+TGG 0.479546 4.4:+3303140 MS.gene05889:CDS
ATCAAATATACTCACAGATA+AGG 0.481086 4.4:-3302372 None:intergenic
TTGAAGAATATTGTAGAGCT+TGG 0.482642 4.4:-3300185 None:intergenic
GTCAGAACTCAAGTTTCTAC+CGG 0.488889 4.4:-3302946 None:intergenic
AAATTGGACCTTCAAGTAGC+TGG 0.490531 4.4:+3303237 MS.gene05889:CDS
GAAGGTTCAGCAGACAAGGC+AGG 0.495629 4.4:-3303188 None:intergenic
TACAAGCTTGGCCGCAAGAT+CGG 0.497439 4.4:+3299810 MS.gene05889:CDS
TTGTTTAGCCTTCCTTGGCA+AGG 0.498778 4.4:+3301432 MS.gene05889:intron
TGCCCATGTCCAGTGTTGGA+AGG 0.501193 4.4:-3303206 None:intergenic
CTTGGCCGCAAGATCGGAAG+TGG 0.502438 4.4:+3299816 MS.gene05889:CDS
TGCTTGCTATCGATTTACTT+GGG 0.508590 4.4:+3300359 MS.gene05889:CDS
ATGTCAATGAGTGGCAGTAA+TGG 0.510047 4.4:-3301664 None:intergenic
GGGGAAGAGCGAATTAGATC+AGG 0.520235 4.4:+3302879 MS.gene05889:CDS
ACACTGTAGAACTACCTGTA+AGG 0.520596 4.4:-3300953 None:intergenic
AACATGGAGCGCATCGTTGG+CGG 0.520716 4.4:+3299783 None:intergenic
CCCTTAGACCTTGCCAAGGA+AGG 0.522544 4.4:-3301440 None:intergenic
ATTCTAAAGGATATTTGCAT+AGG 0.523357 4.4:+3300589 MS.gene05889:CDS
CAAAACATGGAGCGCATCGT+TGG 0.523862 4.4:+3299780 None:intergenic
GAACTCAAGTTTCTACCGGC+TGG 0.525103 4.4:-3302942 None:intergenic
AAGATCGGAAGTGGATCCTT+CGG 0.526716 4.4:+3299825 MS.gene05889:CDS
ACTTGGTCGGAAGGCCAACC+AGG 0.527701 4.4:+3300641 MS.gene05889:CDS
ATTAGATCAGGAAATGCTAC+TGG 0.537963 4.4:+3302891 MS.gene05889:CDS
GATAACTTCCTCATGGGACT+TGG 0.538752 4.4:+3300624 MS.gene05889:CDS
GTTGGCGGCAGCTACAAGCT+TGG 0.539526 4.4:+3299798 MS.gene05889:CDS
GTTGGAAGGTTCAGCAGACA+AGG 0.540905 4.4:-3303192 None:intergenic
GGCTTGCCCATGTCCAGTGT+TGG 0.544697 4.4:-3303210 None:intergenic
GCTTAAATACTGACCTCGAT+AGG 0.544757 4.4:-3301516 None:intergenic
TTCTAAAGGATATTTGCATA+GGG 0.547650 4.4:+3300590 MS.gene05889:CDS
ATGGATGTTGACAATCATCA+AGG 0.547757 4.4:+3302560 MS.gene05889:CDS
AAAATGGTTTGGCATAGATA+GGG 0.551435 4.4:+3300327 MS.gene05889:CDS
GTTAATGTTAGCTGATCAAA+TGG 0.552458 4.4:+3300438 MS.gene05889:CDS
TCTGCTGAACCTTCCAACAC+TGG 0.553667 4.4:+3303197 MS.gene05889:CDS
CAGACAAGGCAGGGTTTAAG+GGG 0.554251 4.4:-3303178 None:intergenic
AAGGTTCAGCAGACAAGGCA+GGG 0.560637 4.4:-3303187 None:intergenic
CCTCATGGGACTTGGTCGGA+AGG 0.562643 4.4:+3300632 MS.gene05889:CDS
TTCTGTACTTCCTTAGAGGA+AGG 0.567077 4.4:+3301298 MS.gene05889:CDS
CACTGTAGAACTACCTGTAA+GGG 0.569854 4.4:-3300952 None:intergenic
AGTCCCATGAGGAAGTTATC+GGG 0.570424 4.4:-3300621 None:intergenic
CGGGATGATTTGGAATCACT+AGG 0.571323 4.4:+3301267 MS.gene05889:CDS
TAAACCCGATAACTTCCTCA+TGG 0.571460 4.4:+3300617 MS.gene05889:CDS
AGAGACCTATTTGCTCGTGA+AGG 0.573148 4.4:+3301728 MS.gene05889:CDS
TAACCGTCATGCAGTAGCAA+TGG 0.576648 4.4:+3302541 MS.gene05889:CDS
AAACCCGATAACTTCCTCAT+GGG 0.582601 4.4:+3300618 MS.gene05889:CDS
TTTGACGGCGACGATTTCGA+AGG 0.585931 4.4:-3299970 None:intergenic
AACCTTCCAACACTGGACAT+GGG 0.589719 4.4:+3303204 MS.gene05889:CDS
AGGATCCACTTCCGATCTTG+CGG 0.593120 4.4:-3299821 None:intergenic
CCTGTAAGGGATGTGGCGAT+TGG 0.601182 4.4:-3300939 None:intergenic
ATGGTTTGGCATAGATAGGG+AGG 0.602024 4.4:+3300330 MS.gene05889:CDS
AGCAGGAGCATAAGAAGCAG+AGG 0.604520 4.4:-3303138 None:intergenic
AGAACTACCTGTAAGGGATG+TGG 0.605784 4.4:-3300946 None:intergenic
TAATAAGACAGTTACCTGGT+TGG 0.606730 4.4:-3300655 None:intergenic
AATATACTCACAGATAAGGA+AGG 0.613072 4.4:-3302368 None:intergenic
GCATGACGGTTACTTGCACC+AGG 0.618520 4.4:-3302530 None:intergenic
TCCTTCGGTGAAATTTACCT+CGG 0.620087 4.4:+3299840 MS.gene05889:CDS
GTTCAGTTCAAATCACCAGC+CGG 0.624880 4.4:+3302927 MS.gene05889:CDS
TCATGCATATTCAGGGCATG+GGG 0.625170 4.4:+3302860 MS.gene05889:intron
ACTCATTGACATTTGATCAG+CGG 0.629606 4.4:+3301675 MS.gene05889:CDS
ACCGAGGTAAATTTCACCGA+AGG 0.633578 4.4:-3299841 None:intergenic
ACTTCCTCATGGGACTTGGT+CGG 0.634675 4.4:+3300628 MS.gene05889:CDS
TGTCTTACATTCTTGTCACG+AGG 0.637274 4.4:-3302972 None:intergenic
GCATCCACAGTTGCTTTACG+AGG 0.642435 4.4:+3300162 MS.gene05889:CDS
GCAGCCCTTAGACCTTGCCA+AGG 0.650628 4.4:-3301444 None:intergenic
CTCTACAATATTCTTCAAGG+AGG 0.657190 4.4:+3300190 MS.gene05889:CDS
GCTGATCAAATGTCAATGAG+TGG 0.657329 4.4:-3301673 None:intergenic
CATCCATTGCTACTGCATGA+CGG 0.662544 4.4:-3302544 None:intergenic
GAAGGTATCGACTCCTATCG+AGG 0.668216 4.4:+3301503 MS.gene05889:CDS
GGGAGAACAAAAGCTTAACA+GGG 0.678093 4.4:+3301109 MS.gene05889:intron
TTGGCCTCGTAAAGCAACTG+TGG 0.692532 4.4:-3300166 None:intergenic
CCTTCCGACCAAGTCCCATG+AGG 0.721487 4.4:-3300632 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATATTAAAAGTAAAAT+TGG - chr4.4:3300049-3300068 None:intergenic 10.0%
!! ATAAAAGAATGAAACAAAAA+TGG - chr4.4:3300979-3300998 None:intergenic 15.0%
!! TACCCATATAATTAAAAATT+TGG - chr4.4:3301994-3302013 None:intergenic 15.0%
!!! TGCCAAATTTTTAATTATAT+GGG + chr4.4:3301989-3302008 MS.gene05889:intron 15.0%
!!! TTTAGTAATTATTCTCTTTT+TGG + chr4.4:3303090-3303109 MS.gene05889:intron 15.0%
!! TTTAATATTATCAGAAGCAA+GGG - chr4.4:3302488-3302507 None:intergenic 20.0%
!!! AATTATTTTAAACACATGCA+TGG + chr4.4:3302202-3302221 MS.gene05889:intron 20.0%
!!! AATTTGATTTCGTTTTTGAT+TGG + chr4.4:3302303-3302322 MS.gene05889:CDS 20.0%
!!! AGGTTTACATAATTGATTTT+GGG + chr4.4:3300888-3300907 MS.gene05889:intron 20.0%
!!! AGTTATTTTACTTTATTCAG+GGG - chr4.4:3301571-3301590 None:intergenic 20.0%
!!! CAGTTATTTTACTTTATTCA+GGG - chr4.4:3301572-3301591 None:intergenic 20.0%
!!! CTGCCAAATTTTTAATTATA+TGG + chr4.4:3301988-3302007 MS.gene05889:intron 20.0%
!!! GGTATAAAATGTTTTGATTT+TGG + chr4.4:3302010-3302029 MS.gene05889:intron 20.0%
!!! TTCTATCATAAACCATATTT+TGG + chr4.4:3300833-3300852 MS.gene05889:intron 20.0%
!!! TTTAAGGAATAGTATTTTAG+AGG + chr4.4:3302059-3302078 MS.gene05889:intron 20.0%
!!! TTTTAATATTATCAGAAGCA+AGG - chr4.4:3302489-3302508 None:intergenic 20.0%
! AAACATTTATTCAAGCTGAA+AGG - chr4.4:3301204-3301223 None:intergenic 25.0%
! ACTAACAAATATATCCTACA+GGG + chr4.4:3301089-3301108 MS.gene05889:intron 25.0%
! ATACATAAAGGAAAAACAGA+GGG - chr4.4:3302272-3302291 None:intergenic 25.0%
! ATCAAATATACTCACAGATA+AGG - chr4.4:3302375-3302394 None:intergenic 25.0%
! ATTGAATATGTGCATTCTAA+AGG + chr4.4:3300576-3300595 MS.gene05889:CDS 25.0%
! CCTGAATAAAGTAAAATAAC+TGG + chr4.4:3301570-3301589 MS.gene05889:intron 25.0%
! TGAAAAAATATGTCAGAAGA+AGG + chr4.4:3301485-3301504 MS.gene05889:CDS 25.0%
! TTACATTGCTAATTCATTAC+AGG + chr4.4:3300123-3300142 MS.gene05889:intron 25.0%
! TTATGAATTGGACCAAAATA+TGG - chr4.4:3300848-3300867 None:intergenic 25.0%
! TTTGTTAGTCACAAAAACTA+AGG - chr4.4:3301078-3301097 None:intergenic 25.0%
!! AAGATTTTCATGCATATTCA+GGG + chr4.4:3302853-3302872 MS.gene05889:intron 25.0%
!! ATTCTAAAGGATATTTGCAT+AGG + chr4.4:3300589-3300608 MS.gene05889:CDS 25.0%
!! TGATTGCTGATACTTTAAAA+TGG - chr4.4:3302330-3302349 None:intergenic 25.0%
!! TTCTAAAGGATATTTGCATA+GGG + chr4.4:3300590-3300609 MS.gene05889:CDS 25.0%
!!! ATCTTTTTGTTTATTGTGGA+AGG + chr4.4:3300395-3300414 MS.gene05889:CDS 25.0%
!!! CAGGTTTACATAATTGATTT+TGG + chr4.4:3300887-3300906 MS.gene05889:intron 25.0%
!!! CCAGTTATTTTACTTTATTC+AGG - chr4.4:3301573-3301592 None:intergenic 25.0%
!!! GAAGATCTTTTTGTTTATTG+TGG + chr4.4:3300391-3300410 MS.gene05889:CDS 25.0%
!!! GTTATTTTACTTTATTCAGG+GGG - chr4.4:3301570-3301589 None:intergenic 25.0%
!!! GTTGTTTTTGTATTGTTCTA+AGG + chr4.4:3300239-3300258 MS.gene05889:intron 25.0%
!!! TTATTTTACTTTATTCAGGG+GGG - chr4.4:3301569-3301588 None:intergenic 25.0%
!!! TTCCTTGTCATTTATTTTGT+GGG + chr4.4:3302425-3302444 MS.gene05889:intron 25.0%
!!! TTCTCTTTTTGGTAGATTTT+TGG + chr4.4:3303101-3303120 MS.gene05889:intron 25.0%
!!! TTTTTTTAGAGCAAAGTAGA+CGG + chr4.4:3301247-3301266 MS.gene05889:intron 25.0%
!!! TTTTTTTTTCCCTTTCCAAA+AGG + chr4.4:3301601-3301620 MS.gene05889:intron 25.0%
AAGCTCTACAATATTCTTCA+AGG + chr4.4:3300187-3300206 MS.gene05889:CDS 30.0%
AATATACTCACAGATAAGGA+AGG - chr4.4:3302371-3302390 None:intergenic 30.0%
ACAAAAAGATCTTCAAGACT+AGG - chr4.4:3300385-3300404 None:intergenic 30.0%
ATTATTGTCTTGAGAAACAG+CGG - chr4.4:3301373-3301392 None:intergenic 30.0%
CAAATTAGAGAGTGAGTATT+AGG - chr4.4:3300020-3300039 None:intergenic 30.0%
CACAAAATAAATGACAAGGA+AGG - chr4.4:3302426-3302445 None:intergenic 30.0%
CAGCACATAGATTTATGAAT+TGG - chr4.4:3300860-3300879 None:intergenic 30.0%
CATACATAAAGGAAAAACAG+AGG - chr4.4:3302273-3302292 None:intergenic 30.0%
CCTTAAATTTAGCCAATCAT+AGG - chr4.4:3302046-3302065 None:intergenic 30.0%
GACTAACAAATATATCCTAC+AGG + chr4.4:3301088-3301107 MS.gene05889:intron 30.0%
GCAAAAGCAATCAAATGATA+TGG - chr4.4:3301796-3301815 None:intergenic 30.0%
GCTAGAAAAAGTCATTGTAA+AGG + chr4.4:3302666-3302685 MS.gene05889:intron 30.0%
GTTAATGTTAGCTGATCAAA+TGG + chr4.4:3300438-3300457 MS.gene05889:CDS 30.0%
GTTGTGAATGAAAAGAAGAA+CGG - chr4.4:3299883-3299902 None:intergenic 30.0%
TAAATTCAATGTTGCATCAC+AGG - chr4.4:3303022-3303041 None:intergenic 30.0%
TATCCTTCTTGATTTCAAAG+AGG + chr4.4:3302092-3302111 MS.gene05889:intron 30.0%
TGCATGAAAATCTTCCAATT+AGG - chr4.4:3302847-3302866 None:intergenic 30.0%
TGGTTTATGATAGAACTGTA+TGG - chr4.4:3300828-3300847 None:intergenic 30.0%
TTGAAGAATATTGTAGAGCT+TGG - chr4.4:3300188-3300207 None:intergenic 30.0%
! AAAATGGTTTGGCATAGATA+GGG + chr4.4:3300327-3300346 MS.gene05889:CDS 30.0%
! AGCAATGTAACGTTAAGTTT+TGG - chr4.4:3300113-3300132 None:intergenic 30.0%
! ATGTCTAAAACTGAGTAGAT+CGG + chr4.4:3303065-3303084 MS.gene05889:intron 30.0%
! CCTATGATTGGCTAAATTTA+AGG + chr4.4:3302043-3302062 MS.gene05889:intron 30.0%
! GAAGATTTTCATGCATATTC+AGG + chr4.4:3302852-3302871 MS.gene05889:intron 30.0%
! GTTTTTCCTTTATGTATGTC+AGG + chr4.4:3302275-3302294 MS.gene05889:intron 30.0%
! TAAAATGGTTTGGCATAGAT+AGG + chr4.4:3300326-3300345 MS.gene05889:CDS 30.0%
!! AATGTAACGTTAAGTTTTGG+TGG - chr4.4:3300110-3300129 None:intergenic 30.0%
!! CTACTTGTTGCTATTTAGTA+TGG + chr4.4:3300710-3300729 MS.gene05889:intron 30.0%
!! CTTGTTTGTTATGACCTAAT+TGG + chr4.4:3302830-3302849 MS.gene05889:intron 30.0%
!! GATTTTTGGAGAAGCAAATA+TGG + chr4.4:3303115-3303134 MS.gene05889:intron 30.0%
!! TATTTTTGTTTAGCCTTCCT+TGG + chr4.4:3301427-3301446 MS.gene05889:intron 30.0%
!! TGCTTTTGCAATTGTTTCTT+GGG + chr4.4:3301807-3301826 MS.gene05889:intron 30.0%
!! TTGCTTTTGCAATTGTTTCT+TGG + chr4.4:3301806-3301825 MS.gene05889:intron 30.0%
!!! CTTCCTTGTCATTTATTTTG+TGG + chr4.4:3302424-3302443 MS.gene05889:intron 30.0%
!!! GTTTTTGTATTGTTCTAAGG+AGG + chr4.4:3300242-3300261 MS.gene05889:intron 30.0%
!!! TTTTTTAGAGCAAAGTAGAC+GGG + chr4.4:3301248-3301267 MS.gene05889:intron 30.0%
AAGTATGAAGCAAACTCTAC+TGG - chr4.4:3301644-3301663 None:intergenic 35.0%
AAGTTAGCAAGGTATACCTT+CGG - chr4.4:3301883-3301902 None:intergenic 35.0%
ACATCTGCGAAATAATGAGT+AGG + chr4.4:3301903-3301922 MS.gene05889:intron 35.0%
ACTCATTGACATTTGATCAG+CGG + chr4.4:3301675-3301694 MS.gene05889:CDS 35.0%
ATACTTCAGGAAAGATCATG+TGG - chr4.4:3301338-3301357 None:intergenic 35.0%
ATGGATGTTGACAATCATCA+AGG + chr4.4:3302560-3302579 MS.gene05889:CDS 35.0%
ATTAGATCAGGAAATGCTAC+TGG + chr4.4:3302891-3302910 MS.gene05889:CDS 35.0%
ATTCCAGGCTTAAAATGGTT+TGG + chr4.4:3300316-3300335 MS.gene05889:CDS 35.0%
CAAGAAGTAATAACGTCTGT+TGG + chr4.4:3302641-3302660 MS.gene05889:intron 35.0%
CAAGTTGCAATACTCATCTT+GGG + chr4.4:3301145-3301164 MS.gene05889:CDS 35.0%
CAGGAAGAGTGAGTTTATTA+AGG - chr4.4:3303003-3303022 None:intergenic 35.0%
CTCTACAATATTCTTCAAGG+AGG + chr4.4:3300190-3300209 MS.gene05889:CDS 35.0%
GCAATAATAAGACAGTTACC+TGG - chr4.4:3300662-3300681 None:intergenic 35.0%
GGGAGAGGAAAAGTTATATT+TGG - chr4.4:3302252-3302271 None:intergenic 35.0%
GGTAACTGAAAACCTATGAT+TGG + chr4.4:3302031-3302050 MS.gene05889:intron 35.0%
GTCCCACAAAATAAATGACA+AGG - chr4.4:3302430-3302449 None:intergenic 35.0%
GTTAGTCACAAAAACTAAGG+AGG - chr4.4:3301075-3301094 None:intergenic 35.0%
TAATAAGACAGTTACCTGGT+TGG - chr4.4:3300658-3300677 None:intergenic 35.0%
TCATAGCCTGACATACATAA+AGG - chr4.4:3302284-3302303 None:intergenic 35.0%
TTATTGTCTTGAGAAACAGC+GGG - chr4.4:3301372-3301391 None:intergenic 35.0%
TTGATTTCAAAGAGGTCATG+TGG + chr4.4:3302100-3302119 MS.gene05889:intron 35.0%
TTGTGTGCAGTGTCTTAAAT+AGG + chr4.4:3302584-3302603 MS.gene05889:intron 35.0%
! ACTTGAAGGTCCAATTTTAC+TGG - chr4.4:3303234-3303253 None:intergenic 35.0%
! AGTCCTCATTTTCTCAAGAA+TGG + chr4.4:3302153-3302172 MS.gene05889:intron 35.0%
! GAGATTTGCATAGTACCTTT+TGG - chr4.4:3301619-3301638 None:intergenic 35.0%
! GCAGAAACTTACGATTTTGA+CGG - chr4.4:3299988-3300007 None:intergenic 35.0%
! GTCCTCATTTTCTCAAGAAT+GGG + chr4.4:3302154-3302173 MS.gene05889:intron 35.0%
! GTTTGAGATTTCGTGTTTCT+TGG + chr4.4:3300283-3300302 MS.gene05889:intron 35.0%
! TCCTCATTTTCTCAAGAATG+GGG + chr4.4:3302155-3302174 MS.gene05889:intron 35.0%
!! CTTTTGCAATTGTTTCTTGG+GGG + chr4.4:3301809-3301828 MS.gene05889:intron 35.0%
!! GCTTTTGCAATTGTTTCTTG+GGG + chr4.4:3301808-3301827 MS.gene05889:intron 35.0%
!! GGTTCTGGAAAAAATACTTC+AGG - chr4.4:3301351-3301370 None:intergenic 35.0%
!! TGACCTCTTTGAAATCAAGA+AGG - chr4.4:3302098-3302117 None:intergenic 35.0%
!! TGCATAGTACCTTTTGGAAA+GGG - chr4.4:3301613-3301632 None:intergenic 35.0%
!! TGCTTGCTATCGATTTACTT+GGG + chr4.4:3300359-3300378 MS.gene05889:CDS 35.0%
!! TTGCATAGTACCTTTTGGAA+AGG - chr4.4:3301614-3301633 None:intergenic 35.0%
!!! ATCTATGTGCTGTTTTTGTC+AGG + chr4.4:3300868-3300887 MS.gene05889:intron 35.0%
!!! ATTTATTTTGTGGGACTGAG+GGG + chr4.4:3302434-3302453 MS.gene05889:intron 35.0%
!!! CATTTATTTTGTGGGACTGA+GGG + chr4.4:3302433-3302452 MS.gene05889:intron 35.0%
!!! TCATTTATTTTGTGGGACTG+AGG + chr4.4:3302432-3302451 MS.gene05889:intron 35.0%
!!! TTGATTTTGGGCTAGCAAAA+CGG + chr4.4:3300900-3300919 MS.gene05889:CDS 35.0%
AAAAGAAGAACGGAAGAGAG+AGG - chr4.4:3299873-3299892 None:intergenic 40.0%
AAACCCGATAACTTCCTCAT+GGG + chr4.4:3300618-3300637 MS.gene05889:CDS 40.0%
AAATGACAAGGAAGGCTCAA+AGG - chr4.4:3302418-3302437 None:intergenic 40.0%
AAATTGGACCTTCAAGTAGC+TGG + chr4.4:3303237-3303256 MS.gene05889:CDS 40.0%
AAGTCCCATGAGGAAGTTAT+CGG - chr4.4:3300625-3300644 None:intergenic 40.0%
AATCACCTTCACGAGCAAAT+AGG - chr4.4:3301736-3301755 None:intergenic 40.0%
AATTTGTCGAATACACCCGA+AGG + chr4.4:3301864-3301883 MS.gene05889:intron 40.0%
ACACTGTAGAACTACCTGTA+AGG - chr4.4:3300956-3300975 None:intergenic 40.0%
AGACAGGACTAAGACACAAA+AGG - chr4.4:3302741-3302760 None:intergenic 40.0%
AGCAACAAGTAGTTGACTGA+CGG - chr4.4:3300702-3300721 None:intergenic 40.0%
AGGGAGAACAAAAGCTTAAC+AGG + chr4.4:3301108-3301127 MS.gene05889:intron 40.0%
AGTAAGCAAGTTACGTCTTC+AGG - chr4.4:3301965-3301984 None:intergenic 40.0%
AGTCACAAAAACTAAGGAGG+TGG - chr4.4:3301072-3301091 None:intergenic 40.0%
AGTTAGCAAGGTATACCTTC+GGG - chr4.4:3301882-3301901 None:intergenic 40.0%
ATGTCAATGAGTGGCAGTAA+TGG - chr4.4:3301667-3301686 None:intergenic 40.0%
CACTGTAGAACTACCTGTAA+GGG - chr4.4:3300955-3300974 None:intergenic 40.0%
CGCTTCAAGAATCCATAATC+AGG - chr4.4:3301701-3301720 None:intergenic 40.0%
CTTAGTCCTGTCTTAGAAGA+TGG + chr4.4:3302748-3302767 MS.gene05889:intron 40.0%
GACATTGAGGAGGTTAGATT+AGG + chr4.4:3302127-3302146 MS.gene05889:intron 40.0%
GCAAGTTGCAATACTCATCT+TGG + chr4.4:3301144-3301163 MS.gene05889:CDS 40.0%
GCTGATCAAATGTCAATGAG+TGG - chr4.4:3301676-3301695 None:intergenic 40.0%
GCTTAAATACTGACCTCGAT+AGG - chr4.4:3301519-3301538 None:intergenic 40.0%
GGGAGAACAAAAGCTTAACA+GGG + chr4.4:3301109-3301128 MS.gene05889:intron 40.0%
GTACTTCTGTACTTCCTTAG+AGG + chr4.4:3301294-3301313 MS.gene05889:CDS 40.0%
GTCACAAAAACTAAGGAGGT+GGG - chr4.4:3301071-3301090 None:intergenic 40.0%
GTCAGAACTCAAGTTTCTAC+CGG - chr4.4:3302949-3302968 None:intergenic 40.0%
TAAACCCGATAACTTCCTCA+TGG + chr4.4:3300617-3300636 MS.gene05889:CDS 40.0%
TAAAGGAAAAACAGAGGGAG+AGG - chr4.4:3302267-3302286 None:intergenic 40.0%
TACTTCCTTAGAGGAAGGTA+TGG + chr4.4:3301303-3301322 MS.gene05889:intron 40.0%
TCACAAAAACTAAGGAGGTG+GGG - chr4.4:3301070-3301089 None:intergenic 40.0%
TCCCCATTCTTGAGAAAATG+AGG - chr4.4:3302159-3302178 None:intergenic 40.0%
TCCTTCGGTGAAATTTACCT+CGG + chr4.4:3299840-3299859 MS.gene05889:CDS 40.0%
TGCAATACTCATCTTGGGAT+TGG + chr4.4:3301150-3301169 MS.gene05889:CDS 40.0%
TGTCTTACATTCTTGTCACG+AGG - chr4.4:3302975-3302994 None:intergenic 40.0%
TTCATGCATATTCAGGGCAT+GGG + chr4.4:3302859-3302878 MS.gene05889:intron 40.0%
TTCGCAGATGTAAGTTAGCA+AGG - chr4.4:3301894-3301913 None:intergenic 40.0%
TTCTGTACTTCCTTAGAGGA+AGG + chr4.4:3301298-3301317 MS.gene05889:CDS 40.0%
TTTACTTTATTCAGGGGGGA+GGG - chr4.4:3301565-3301584 None:intergenic 40.0%
TTTCATGCATATTCAGGGCA+TGG + chr4.4:3302858-3302877 MS.gene05889:intron 40.0%
! ATGCCAAACCATTTTAAGCC+TGG - chr4.4:3300322-3300341 None:intergenic 40.0%
! ATTTGGTACCGAAGATCAGA+GGG - chr4.4:3302235-3302254 None:intergenic 40.0%
! GTTTTTCTCCCTCTGATCTT+CGG + chr4.4:3302224-3302243 MS.gene05889:intron 40.0%
! TAAGCTTTTGTTCTCCCTGT+AGG - chr4.4:3301106-3301125 None:intergenic 40.0%
! TATTTGGTACCGAAGATCAG+AGG - chr4.4:3302236-3302255 None:intergenic 40.0%
! TTTTACTTTATTCAGGGGGG+AGG - chr4.4:3301566-3301585 None:intergenic 40.0%
!! AAGCCTTATTCCACTAAGTG+GGG + chr4.4:3300779-3300798 MS.gene05889:intron 40.0%
!! CAAGCCTTATTCCACTAAGT+GGG + chr4.4:3300778-3300797 MS.gene05889:intron 40.0%
!! GTATTGTTCTAAGGAGGTAG+TGG + chr4.4:3300248-3300267 MS.gene05889:intron 40.0%
!! GTGCTTGCTATCGATTTACT+TGG + chr4.4:3300358-3300377 MS.gene05889:CDS 40.0%
!! TTCCATCCATCTTCTAAGAC+AGG - chr4.4:3302757-3302776 None:intergenic 40.0%
!!! AGTTTTGTTGACAACCTGCA+AGG + chr4.4:3302700-3302719 MS.gene05889:intron 40.0%
!!! TTCCTTTTTGAAGTACCAGC+AGG - chr4.4:3303158-3303177 None:intergenic 40.0%
AACCTTCCAACACTGGACAT+GGG + chr4.4:3303204-3303223 MS.gene05889:CDS 45.0%
AAGATCGGAAGTGGATCCTT+CGG + chr4.4:3299825-3299844 MS.gene05889:CDS 45.0%
ACCGAGGTAAATTTCACCGA+AGG - chr4.4:3299844-3299863 None:intergenic 45.0%
AGAACTACCTGTAAGGGATG+TGG - chr4.4:3300949-3300968 None:intergenic 45.0%
AGAGACCTATTTGCTCGTGA+AGG + chr4.4:3301728-3301747 MS.gene05889:CDS 45.0%
AGTCCCATGAGGAAGTTATC+GGG - chr4.4:3300624-3300643 None:intergenic 45.0%
CATCCATTGCTACTGCATGA+CGG - chr4.4:3302547-3302566 None:intergenic 45.0%
CATGGGCAAGCCAGTAAAAT+TGG + chr4.4:3303221-3303240 MS.gene05889:CDS 45.0%
CCACTTAGTGGAATAAGGCT+TGG - chr4.4:3300780-3300799 None:intergenic 45.0%
CTCCTGCTGGTACTTCAAAA+AGG + chr4.4:3303153-3303172 MS.gene05889:CDS 45.0%
CTTATTCCACTAAGTGGGGT+CGG + chr4.4:3300783-3300802 MS.gene05889:intron 45.0%
GAATGCCATACCTTCCTCTA+AGG - chr4.4:3301311-3301330 None:intergenic 45.0%
GATAACTTCCTCATGGGACT+TGG + chr4.4:3300624-3300643 MS.gene05889:CDS 45.0%
GATGACATCCAGCTACTTGA+AGG - chr4.4:3303248-3303267 None:intergenic 45.0%
GCAAAGTAGACGGGATGATT+TGG + chr4.4:3301257-3301276 MS.gene05889:CDS 45.0%
GCAACAAGTAGTTGACTGAC+GGG - chr4.4:3300701-3300720 None:intergenic 45.0%
GGTATCAATATGCGTAGCTG+CGG - chr4.4:3299952-3299971 None:intergenic 45.0%
GTCCTGTCTTAGAAGATGGA+TGG + chr4.4:3302752-3302771 MS.gene05889:intron 45.0%
GTGGCATTCCAGGCTTAAAA+TGG + chr4.4:3300311-3300330 MS.gene05889:CDS 45.0%
GTTCAGTTCAAATCACCAGC+CGG + chr4.4:3302927-3302946 MS.gene05889:CDS 45.0%
TAACCGTCATGCAGTAGCAA+TGG + chr4.4:3302541-3302560 MS.gene05889:CDS 45.0%
TCATGCATATTCAGGGCATG+GGG + chr4.4:3302860-3302879 MS.gene05889:intron 45.0%
TTACTTTATTCAGGGGGGAG+GGG - chr4.4:3301564-3301583 None:intergenic 45.0%
TTCAAAGAGGTCATGTGGCA+AGG + chr4.4:3302105-3302124 MS.gene05889:intron 45.0%
TTGTTGACAACCTGCAAGGT+TGG + chr4.4:3302704-3302723 MS.gene05889:intron 45.0%
TTTGATCAGCGGCCTGATTA+TGG + chr4.4:3301686-3301705 MS.gene05889:CDS 45.0%
! ATGGTTTGGCATAGATAGGG+AGG + chr4.4:3300330-3300349 MS.gene05889:CDS 45.0%
! CGGGATGATTTGGAATCACT+AGG + chr4.4:3301267-3301286 MS.gene05889:CDS 45.0%
! GATTTCGTGTTTCTTGGTGC+AGG + chr4.4:3300289-3300308 MS.gene05889:intron 45.0%
! TTGTTTAGCCTTCCTTGGCA+AGG + chr4.4:3301432-3301451 MS.gene05889:intron 45.0%
!! CCAAGCCTTATTCCACTAAG+TGG + chr4.4:3300777-3300796 MS.gene05889:intron 45.0%
!! TCAGGAAATGCTACTGGTTC+TGG + chr4.4:3302897-3302916 MS.gene05889:CDS 45.0%
!! TTGGGCTAGCAAAACGGTAT+CGG + chr4.4:3300906-3300925 MS.gene05889:CDS 45.0%
AAGAGAGAGGATAGTCACCG+AGG - chr4.4:3299860-3299879 None:intergenic 50.0%
AAGGTTCAGCAGACAAGGCA+GGG - chr4.4:3303190-3303209 None:intergenic 50.0%
AGCAGACAAGGCAGGGTTTA+AGG - chr4.4:3303183-3303202 None:intergenic 50.0%
AGGATCCACTTCCGATCTTG+CGG - chr4.4:3299824-3299843 None:intergenic 50.0%
ATGTGGCAAGGACATTGAGG+AGG + chr4.4:3302117-3302136 MS.gene05889:intron 50.0%
CAGACAAGGCAGGGTTTAAG+GGG - chr4.4:3303181-3303200 None:intergenic 50.0%
CCTTCCTTGGCAAGGTCTAA+GGG + chr4.4:3301440-3301459 MS.gene05889:CDS 50.0%
CGACCCCACTTAGTGGAATA+AGG - chr4.4:3300785-3300804 None:intergenic 50.0%
GAACCTTCCAACACTGGACA+TGG + chr4.4:3303203-3303222 MS.gene05889:CDS 50.0%
GAACTCAAGTTTCTACCGGC+TGG - chr4.4:3302945-3302964 None:intergenic 50.0%
GCAGACAAGGCAGGGTTTAA+GGG - chr4.4:3303182-3303201 None:intergenic 50.0%
GGGGAAGAGCGAATTAGATC+AGG + chr4.4:3302879-3302898 MS.gene05889:CDS 50.0%
GTCATGTGGCAAGGACATTG+AGG + chr4.4:3302114-3302133 MS.gene05889:intron 50.0%
GTTGGAAGGTTCAGCAGACA+AGG - chr4.4:3303195-3303214 None:intergenic 50.0%
TACAAGCTTGGCCGCAAGAT+CGG + chr4.4:3299810-3299829 MS.gene05889:CDS 50.0%
TACTTTATTCAGGGGGGAGG+GGG - chr4.4:3301563-3301582 None:intergenic 50.0%
TCTGCTGAACCTTCCAACAC+TGG + chr4.4:3303197-3303216 MS.gene05889:CDS 50.0%
TCTGCTTCTTATGCTCCTGC+TGG + chr4.4:3303140-3303159 MS.gene05889:CDS 50.0%
TCTTTACCACAGCCAGTTCC+TGG + chr4.4:3302512-3302531 MS.gene05889:intron 50.0%
TGGGACTGAGGGGTTACTAA+TGG + chr4.4:3302444-3302463 MS.gene05889:intron 50.0%
TTGGCCTCGTAAAGCAACTG+TGG - chr4.4:3300169-3300188 None:intergenic 50.0%
TTTGACGGCGACGATTTCGA+AGG - chr4.4:3299973-3299992 None:intergenic 50.0%
! ACCTGCAAGGTTGGCTGAAT+CGG + chr4.4:3302713-3302732 MS.gene05889:intron 50.0%
! ACTGACGGGCAAGTTCAACT+GGG - chr4.4:3300687-3300706 None:intergenic 50.0%
! ACTTCCTCATGGGACTTGGT+CGG + chr4.4:3300628-3300647 MS.gene05889:CDS 50.0%
! AGCAGGAGCATAAGAAGCAG+AGG - chr4.4:3303141-3303160 None:intergenic 50.0%
! GCAATTGTTTCTTGGGGGCA+TGG + chr4.4:3301814-3301833 MS.gene05889:intron 50.0%
! GCATCCACAGTTGCTTTACG+AGG + chr4.4:3300162-3300181 MS.gene05889:CDS 50.0%
! TCTTGAGAAACAGCGGGTTC+TGG - chr4.4:3301366-3301385 None:intergenic 50.0%
! TTCGTGTTTCTTGGTGCAGG+TGG + chr4.4:3300292-3300311 MS.gene05889:intron 50.0%
!! GAAGGTATCGACTCCTATCG+AGG + chr4.4:3301503-3301522 MS.gene05889:CDS 50.0%
!! TGGGCTAGCAAAACGGTATC+GGG + chr4.4:3300907-3300926 MS.gene05889:CDS 50.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4.4:3300791-3300810 MS.gene05889:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4.4:3300792-3300811 None:intergenic 55.0%
CCAATCGCCACATCCCTTAC+AGG + chr4.4:3300939-3300958 MS.gene05889:CDS 55.0%
CCCTTAGACCTTGCCAAGGA+AGG - chr4.4:3301443-3301462 None:intergenic 55.0%
CCTGTAAGGGATGTGGCGAT+TGG - chr4.4:3300942-3300961 None:intergenic 55.0%
CGGTTACTTGCACCAGGAAC+TGG - chr4.4:3302527-3302546 None:intergenic 55.0%
GAAGGTTCAGCAGACAAGGC+AGG - chr4.4:3303191-3303210 None:intergenic 55.0%
GCATGACGGTTACTTGCACC+AGG - chr4.4:3302533-3302552 None:intergenic 55.0%
GCCTTCCTTGGCAAGGTCTA+AGG + chr4.4:3301439-3301458 MS.gene05889:intron 55.0%
TCCGATTCAGCCAACCTTGC+AGG - chr4.4:3302717-3302736 None:intergenic 55.0%
! AGGGATGTGGCGATTGGTTG+TGG - chr4.4:3300936-3300955 None:intergenic 55.0%
! GACTGACGGGCAAGTTCAAC+TGG - chr4.4:3300688-3300707 None:intergenic 55.0%
! TGCCCATGTCCAGTGTTGGA+AGG - chr4.4:3303209-3303228 None:intergenic 55.0%
ACTTGGTCGGAAGGCCAACC+AGG + chr4.4:3300641-3300660 MS.gene05889:CDS 60.0%
CCTTCCGACCAAGTCCCATG+AGG - chr4.4:3300635-3300654 None:intergenic 60.0%
CTTGCACCAGGAACTGGCTG+TGG - chr4.4:3302521-3302540 None:intergenic 60.0%
CTTGGCCGCAAGATCGGAAG+TGG + chr4.4:3299816-3299835 MS.gene05889:CDS 60.0%
GACGGGCAAGTTCAACTGGG+TGG - chr4.4:3300684-3300703 None:intergenic 60.0%
GCAGCCCTTAGACCTTGCCA+AGG - chr4.4:3301447-3301466 None:intergenic 60.0%
GGCTTGCCCATGTCCAGTGT+TGG - chr4.4:3303213-3303232 None:intergenic 60.0%
GTTGGCGGCAGCTACAAGCT+TGG + chr4.4:3299798-3299817 MS.gene05889:CDS 60.0%
! CCTCATGGGACTTGGTCGGA+AGG + chr4.4:3300632-3300651 MS.gene05889:CDS 60.0%
! CTTGGTGCAGGTGGCATTCC+AGG + chr4.4:3300301-3300320 MS.gene05889:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 3299786 3303295 3299786 ID=MS.gene05889
chr4.4 mRNA 3299786 3303295 3299786 ID=MS.gene05889.t1;Parent=MS.gene05889
chr4.4 exon 3299786 3299861 3299786 ID=MS.gene05889.t1.exon1;Parent=MS.gene05889.t1
chr4.4 CDS 3299786 3299861 3299786 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3299955 3299995 3299955 ID=MS.gene05889.t1.exon2;Parent=MS.gene05889.t1
chr4.4 CDS 3299955 3299995 3299955 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3300145 3300214 3300145 ID=MS.gene05889.t1.exon3;Parent=MS.gene05889.t1
chr4.4 CDS 3300145 3300214 3300145 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3300311 3300459 3300311 ID=MS.gene05889.t1.exon4;Parent=MS.gene05889.t1
chr4.4 CDS 3300311 3300459 3300311 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3300567 3300662 3300567 ID=MS.gene05889.t1.exon5;Parent=MS.gene05889.t1
chr4.4 CDS 3300567 3300662 3300567 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3300890 3300960 3300890 ID=MS.gene05889.t1.exon6;Parent=MS.gene05889.t1
chr4.4 CDS 3300890 3300960 3300890 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3301110 3301171 3301110 ID=MS.gene05889.t1.exon7;Parent=MS.gene05889.t1
chr4.4 CDS 3301110 3301171 3301110 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3301256 3301319 3301256 ID=MS.gene05889.t1.exon8;Parent=MS.gene05889.t1
chr4.4 CDS 3301256 3301319 3301256 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3301440 3301524 3301440 ID=MS.gene05889.t1.exon9;Parent=MS.gene05889.t1
chr4.4 CDS 3301440 3301524 3301440 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3301623 3301749 3301623 ID=MS.gene05889.t1.exon10;Parent=MS.gene05889.t1
chr4.4 CDS 3301623 3301749 3301623 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3302297 3302379 3302297 ID=MS.gene05889.t1.exon11;Parent=MS.gene05889.t1
chr4.4 CDS 3302297 3302379 3302297 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3302524 3302581 3302524 ID=MS.gene05889.t1.exon12;Parent=MS.gene05889.t1
chr4.4 CDS 3302524 3302581 3302524 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3302874 3302986 3302874 ID=MS.gene05889.t1.exon13;Parent=MS.gene05889.t1
chr4.4 CDS 3302874 3302986 3302874 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
chr4.4 exon 3303116 3303295 3303116 ID=MS.gene05889.t1.exon14;Parent=MS.gene05889.t1
chr4.4 CDS 3303116 3303295 3303116 ID=cds.MS.gene05889.t1;Parent=MS.gene05889.t1
Gene Sequence

>MS.gene05889

ATGGAGCGCATCGTTGGCGGCAGCTACAAGCTTGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATTTACCTCGGTGACTATCCTCTCTCTTCCGTTCTTCTTTTCATTCACAACGATTCTTTCTTTATTCTTATCACTCTTTTAACGTTTTCATTTCTCTCCGCAGCTACGCATATTGATACCTTCGAAATCGTCGCCGTCAAAATCGTAAGTTTCTGCTACGCTTTTCCTAATACTCACTCTCTAATTTGCATATTCCAATTTTACTTTTAATATTATCATTCAATTATCTATTATTTTGCTAATTTGCTTCTTAATCCACCAAAACTTAACGTTACATTGCTAATTCATTACAGGAGAATAGTAAAACAAAGCATCCACAGTTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTATGCATTTTGCAATATTCAGTAGTTGTTTTTGTATTGTTCTAAGGAGGTAGTGGTTAGAGTCATGAGTTTGAGATTTCGTGTTTCTTGGTGCAGGTGGCATTCCAGGCTTAAAATGGTTTGGCATAGATAGGGAGGATAACGTGCTTGCTATCGATTTACTTGGGCCTAGTCTTGAAGATCTTTTTGTTTATTGTGGAAGGAAGTTTTCGTTGAAGACTGTGTTAATGTTAGCTGATCAAATGGTATATGCTTACTGACTTGTATGTTTTTCACAAAACTATATGCTTATTTCATATATTTGATGCTAATTCGTTCAATTTATCTCTTTTTTCATATTTTTTATGTGCAGATCACTAGAATTGAATATGTGCATTCTAAAGGATATTTGCATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAGGCCAACCAGGTAACTGTCTTATTATTGCCACCCAGTTGAACTTGCCCGTCAGTCAACTACTTGTTGCTATTTAGTATGGTTTCACTTGTGTGTGTAATTTTGTTGTTCTTGTCACAACAACAACCAAGCCTTATTCCACTAAGTGGGGTCGGCTACATGGATCAAATTACACCATACAGTTCTATCATAAACCATATTTTGGTCCAATTCATAAATCTATGTGCTGTTTTTGTCAGGTTTACATAATTGATTTTGGGCTAGCAAAACGGTATCGGGAATCCACAACCAATCGCCACATCCCTTACAGGTAGTTCTACAGTGTCCATTTTTGTTTCATTCTTTTATTTTTGTTTTCATTTTCGACATTTATATCTTGTAAGTTGCATTCATCTAATTATGAATTATTTTCACATCCCCACCTCCTTAGTTTTTGTGACTAACAAATATATCCTACAGGGAGAACAAAAGCTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGGTAAGTCTTAAGTTAGAAGAATATATTAACCTTTCAGCTTGAATAAATGTTTACACATTCTCATTCACTATATTTTTTTTTTAGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTTAGAGGAAGGTATGGCATTCTGTTCCACATGATCTTTCCTGAAGTATTTTTTCCAGAACCCGCTGTTTCTCAAGACAATAATGAAATGTCATGACTTATAGTTTTAAATTTGTAACTATTTTTGTTTAGCCTTCCTTGGCAAGGTCTAAGGGCTGCAACAAAGAAACAGAAGTATGAAAAAATATGTCAGAAGAAGGTATCGACTCCTATCGAGGTCAGTATTTAAGCATTTATGTGTGTTGTGAAGCACCCCCTCCCCCCTGAATAAAGTAAAATAACTGGCATACTAATTTTTTTTTCCCTTTCCAAAAGGTACTATGCAAATCTCATCCAGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACATTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCTTATTTAGAGACCTATTTGCTCGTGAAGGTGATTGTTTTTCATTTTTCAAATAATATAAAAAACGATTGAACCATATCATTTGATTGCTTTTGCAATTGTTTCTTGGGGGCATGGACATTATTTTCAACTTTTATAACTACAAATTTGTCGAATACACCCGAAGGTATACCTTGCTAACTTACATCTGCGAAATAATGAGTAGGTGTAAGCTAGCAAGTTATAACTAAAAATTTCACACACCTGAAGACGTAACTTGCTTACTTATCTGCCAAATTTTTAATTATATGGGTATAAAATGTTTTGATTTTGGTAACTGAAAACCTATGATTGGCTAAATTTAAGGAATAGTATTTTAGAGGAATAAAAAAATATCCTTCTTGATTTCAAAGAGGTCATGTGGCAAGGACATTGAGGAGGTTAGATTAGGAGAAGTCCTCATTTTCTCAAGAATGGGGACTCAAATTTAATACATAGTTGTTAATTATTTTAAACACATGCATGGTTTTTCTCCCTCTGATCTTCGGTACCAAATATAACTTTTCCTCTCCCTCTGTTTTTCCTTTATGTATGTCAGGCTATGAATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCACAGAAGAATTTAGTTCAGCCTTCCTTATCTGTGAGTATATTTGATTTTTAGTCTCTGTGCATACACCTTTGAGCCTTCCTTGTCATTTATTTTGTGGGACTGAGGGGTTACTAATGGTTTTGCAACTTGAATCTTCCCTTGCTTCTGATAATATTAAAATTGTCTTTACCACAGCCAGTTCCTGGTGCAAGTAACCGTCATGCAGTAGCAATGGATGTTGACAATCATCAAGGTTTGTGTGCAGTGTCTTAAATAGGTTATGTGATTTTATAAATTATAGATGTTTCTTATCAAGAAGTAATAACGTCTGTTGGTTGCTAGAAAAAGTCATTGTAAAGGCAACAAAATTAAGTTTTGTTGACAACCTGCAAGGTTGGCTGAATCGGATCCTTTTGTGTCTTAGTCCTGTCTTAGAAGATGGATGGAATGACGTTTAGTTTTCTACTTTATGAATATTATTATTTTTTTAAAACAAAATATCTTGTTTGTTATGACCTAATTGGAAGATTTTCATGCATATTCAGGGCATGGGGAAGAGCGAATTAGATCAGGAAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTCAAATCACCAGCCGGTAGAAACTTGAGTTCTGACAATCCTCGTGACAAGAATGTAAGACATCTTGCCTTAATAAACTCACTCTTCCTGTGATGCAACATTGAATTTACTGTTCAGAGATCACACAACATTATGTCTAAAACTGAGTAGATCGGTATTTAGTAATTATTCTCTTTTTGGTAGATTTTTGGAGAAGCAAATATGGCCTCTGCTTCTTATGCTCCTGCTGGTACTTCAAAAAGGAACCCCTTAAACCCTGCCTTGTCTGCTGAACCTTCCAACACTGGACATGGGCAAGCCAGTAAAATTGGACCTTCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTTCCAAATGA
Protein sequence

>MS.gene05889.t1

MERIVGGSYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPGLKWFGIDREDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESTTNRHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLRAATKKQKYEKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQSQKNLVQPSLSPVPGASNRHAVAMDVDNHQGHGEERIRSGNATGSGVKVQFKSPAGRNLSSDNPRDKNIFGEANMASASYAPAGTSKRNPLNPALSAEPSNTGHGQASKIGPSSSWMSSLQRISSSK