AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061465

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061465.t1 MTR_6g087070 99.292 424 3 0 1 424 1 424 0.0 878
MS.gene061465.t1 MTR_8g102930 79.812 426 82 4 1 424 1 424 0.0 699
MS.gene061465.t1 MTR_3g110180 64.619 407 132 5 1 398 1 404 0.0 524
MS.gene061465.t1 MTR_3g110180 64.619 407 131 6 1 398 1 403 0.0 520
MS.gene061465.t1 MTR_2g099670 63.246 419 138 7 1 411 1 411 0.0 520
MS.gene061465.t1 MTR_4g126010 72.973 333 89 1 1 333 1 332 0.0 520
MS.gene061465.t1 MTR_1g042280 75.625 320 75 2 1 317 2 321 0.0 519
MS.gene061465.t1 MTR_1g069720 76.299 308 73 0 1 308 1 308 6.85e-179 507
MS.gene061465.t1 MTR_8g018310 77.926 299 65 1 1 299 1 298 9.46e-179 507
MS.gene061465.t1 MTR_8g018310 72.644 329 86 3 1 328 1 326 3.18e-177 501
MS.gene061465.t1 MTR_1g075870 72.586 321 85 2 1 318 2 322 3.73e-177 498
MS.gene061465.t1 MTR_1g004990 60.526 418 149 5 1 411 1 409 4.15e-177 501
MS.gene061465.t1 MTR_1g075870 72.586 321 85 2 1 318 2 322 1.47e-176 501
MS.gene061465.t1 MTR_7g097160 76.094 297 71 0 1 297 1 297 1.38e-174 496
MS.gene061465.t1 MTR_2g039930 73.579 299 79 0 1 299 1 299 1.54e-171 489
MS.gene061465.t1 MTR_1g042280 76.157 281 64 2 40 317 9 289 1.77e-162 459
MS.gene061465.t1 MTR_0492s0030 67.412 313 99 2 1 310 1 313 3.21e-156 446
MS.gene061465.t1 MTR_0543s0020 67.412 313 99 2 1 310 1 313 3.21e-156 446
MS.gene061465.t1 MTR_2g099670 61.453 358 122 7 62 411 10 359 1.20e-148 429
MS.gene061465.t1 MTR_1g075870 70.968 279 77 3 58 332 2 280 3.13e-147 420
MS.gene061465.t1 MTR_2g039930 76.606 218 51 0 82 299 1 218 2.85e-129 378
MS.gene061465.t1 MTR_7g097160 80.392 153 30 0 145 297 26 178 4.73e-89 274
MS.gene061465.t1 MTR_7g006030 36.268 284 164 5 9 278 37 317 1.46e-55 194
MS.gene061465.t1 MTR_1g116210 37.818 275 157 6 9 273 119 389 4.75e-54 191
MS.gene061465.t1 MTR_7g085540 36.749 283 161 6 9 277 147 425 2.33e-53 189
MS.gene061465.t1 MTR_1g007150 36.996 273 161 5 9 273 124 393 2.66e-53 189
MS.gene061465.t1 MTR_3g110240 36.264 273 163 5 9 273 121 390 7.80e-52 185
MS.gene061465.t1 MTR_8g014050 34.043 282 164 6 9 273 128 404 1.95e-47 172
MS.gene061465.t1 MTR_7g116400 46.429 84 42 2 82 162 3 86 5.11e-16 73.6
MS.gene061465.t1 MTR_7g073520 26.050 238 158 5 3 236 142 365 4.57e-13 71.2
MS.gene061465.t1 MTR_5g069000 25.000 288 151 9 2 249 756 1018 6.78e-13 71.2
MS.gene061465.t1 MTR_4g035835 25.091 275 147 8 2 236 752 1007 9.15e-13 70.9
MS.gene061465.t1 MTR_8g099095 31.132 212 128 8 9 213 66 266 1.46e-12 69.7
MS.gene061465.t1 MTR_5g009830 29.384 211 133 6 9 213 67 267 5.78e-12 67.4
MS.gene061465.t1 MTR_5g009830 29.384 211 133 6 9 213 67 267 7.69e-12 67.4
MS.gene061465.t1 MTR_1g105290 26.818 220 134 8 8 213 54 260 9.24e-12 67.4
MS.gene061465.t1 MTR_7g113490 26.364 220 135 7 8 213 67 273 1.08e-11 67.0
MS.gene061465.t1 MTR_1g105290 26.818 220 134 8 8 213 54 260 1.40e-11 66.6
MS.gene061465.t1 MTR_3g098090 28.017 232 148 6 9 234 32 250 1.77e-11 66.2
MS.gene061465.t1 MTR_1g105290 26.818 220 134 8 8 213 54 260 2.11e-11 65.9
MS.gene061465.t1 MTR_4g107490 30.968 155 100 4 5 153 69 222 2.64e-11 65.9
MS.gene061465.t1 MTR_4g132860 29.412 170 103 4 100 269 178 330 3.28e-11 65.1
MS.gene061465.t1 MTR_5g092815 26.407 231 151 8 9 233 91 308 4.04e-11 64.7
MS.gene061465.t1 MTR_8g079790 27.803 223 134 9 6 213 122 332 4.52e-11 65.1
MS.gene061465.t1 MTR_3g051770 26.754 228 148 6 9 230 84 298 5.24e-11 64.7
MS.gene061465.t1 MTR_3g092230 28.767 219 134 7 6 213 135 342 7.09e-11 64.7
MS.gene061465.t1 MTR_4g128820 28.936 235 132 10 8 229 9 221 8.35e-11 63.9
MS.gene061465.t1 MTR_4g086660 26.977 215 139 5 8 213 136 341 8.80e-11 64.3
MS.gene061465.t1 MTR_3g099920 28.899 218 129 8 9 216 19 220 8.97e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061465.t1 AT4G28880 70.883 419 107 4 1 410 1 413 0.0 612
MS.gene061465.t1 AT4G28880 70.883 419 107 4 1 410 1 413 0.0 612
MS.gene061465.t1 AT4G28880 70.883 419 107 4 1 410 1 413 0.0 612
MS.gene061465.t1 AT4G28880 70.883 419 107 4 1 410 1 413 0.0 612
MS.gene061465.t1 AT4G28860 71.801 422 102 7 1 416 1 411 0.0 607
MS.gene061465.t1 AT4G28860 79.339 363 68 3 1 358 1 361 0.0 602
MS.gene061465.t1 AT4G26100 72.000 325 90 1 1 325 1 324 7.34e-180 509
MS.gene061465.t1 AT5G57015 71.875 320 90 0 1 320 1 320 8.31e-178 503
MS.gene061465.t1 AT1G72710 69.275 345 103 3 1 345 1 342 3.04e-177 503
MS.gene061465.t1 AT2G19470 68.452 336 96 3 1 327 1 335 1.14e-175 498
MS.gene061465.t1 AT1G03930 75.084 297 74 0 1 297 1 297 5.02e-175 498
MS.gene061465.t1 AT4G28540 75.503 298 73 0 1 298 5 302 8.32e-175 497
MS.gene061465.t1 AT5G44100 69.394 330 90 1 1 319 1 330 2.97e-174 496
MS.gene061465.t1 AT5G44100 69.394 330 90 1 1 319 1 330 2.97e-174 496
MS.gene061465.t1 AT3G23340 72.756 312 84 1 1 312 1 311 6.75e-174 494
MS.gene061465.t1 AT5G43320 73.737 297 78 0 1 297 1 297 2.20e-170 486
MS.gene061465.t1 AT4G14340 71.474 312 88 1 1 312 7 317 6.97e-170 484
MS.gene061465.t1 AT1G04440 69.018 326 93 2 1 318 1 326 2.93e-169 483
MS.gene061465.t1 AT4G14340 71.474 312 88 1 1 312 7 317 3.24e-169 479
MS.gene061465.t1 AT5G43320 73.737 297 78 0 1 297 1 297 2.70e-168 476
MS.gene061465.t1 AT5G43320 73.737 297 78 0 1 297 1 297 2.70e-168 476
MS.gene061465.t1 AT3G23340 69.231 312 81 2 1 312 1 297 4.10e-161 461
MS.gene061465.t1 AT4G08800 62.585 294 78 2 1 294 1 262 3.69e-135 389
MS.gene061465.t1 AT2G25760 38.214 280 158 4 9 273 107 386 4.81e-57 199
MS.gene061465.t1 AT3G03940 37.809 283 158 6 9 277 140 418 1.59e-55 195
MS.gene061465.t1 AT2G25760 37.857 280 156 5 9 273 107 383 7.54e-55 193
MS.gene061465.t1 AT5G18190 36.842 285 162 6 9 279 130 410 5.83e-54 191
MS.gene061465.t1 AT5G18190 36.842 285 162 6 9 279 130 410 5.83e-54 191
MS.gene061465.t1 AT3G13670 35.211 284 167 5 9 278 137 417 2.19e-53 189
MS.gene061465.t1 AT4G23650 29.384 211 133 6 9 213 78 278 6.02e-13 70.9
MS.gene061465.t1 AT1G54960 27.064 218 136 7 8 213 67 273 1.35e-12 70.1
MS.gene061465.t1 AT1G54960 27.064 218 136 7 8 213 67 273 1.35e-12 70.1
MS.gene061465.t1 AT3G23000 30.303 231 140 9 3 224 19 237 2.67e-12 68.6
MS.gene061465.t1 AT3G06030 26.147 218 138 7 8 213 67 273 2.83e-12 68.9
MS.gene061465.t1 AT2G46700 26.267 217 142 4 6 213 140 347 5.97e-12 67.8
MS.gene061465.t1 AT3G08720 24.370 238 160 6 4 236 134 356 6.98e-12 67.4
MS.gene061465.t1 AT3G08720 24.370 238 160 6 4 236 134 356 6.98e-12 67.4
MS.gene061465.t1 AT3G08720 24.370 238 160 6 4 236 134 356 6.98e-12 67.4
MS.gene061465.t1 AT3G08720 24.370 238 160 6 4 236 134 356 6.98e-12 67.4
MS.gene061465.t1 AT2G41860 27.907 215 139 6 5 213 50 254 7.26e-12 67.4
MS.gene061465.t1 AT3G50530 26.941 219 140 7 5 213 144 352 9.70e-12 67.4
MS.gene061465.t1 AT1G09000 27.189 217 135 7 9 213 69 274 1.15e-11 67.0
MS.gene061465.t1 AT2G41860 27.907 215 139 6 5 213 50 254 1.18e-11 67.0
MS.gene061465.t1 AT1G09000 27.189 217 135 7 9 213 69 274 1.64e-11 66.6
MS.gene061465.t1 AT3G17850 24.254 268 159 8 2 236 875 1131 1.66e-11 67.0
MS.gene061465.t1 AT1G74740 27.442 215 140 6 5 213 55 259 1.67e-11 66.6
MS.gene061465.t1 AT3G08730 23.790 248 169 6 4 246 128 360 1.92e-11 66.2
MS.gene061465.t1 AT3G08730 23.790 248 169 6 4 246 128 360 1.92e-11 66.2
MS.gene061465.t1 AT3G20410 27.193 228 147 6 9 230 91 305 2.14e-11 66.2
MS.gene061465.t1 AT3G20410 27.193 228 147 6 9 230 91 305 2.14e-11 66.2
MS.gene061465.t1 AT2G17890 25.116 215 145 5 8 215 107 312 2.85e-11 65.9
MS.gene061465.t1 AT4G24400 27.686 242 126 9 8 227 8 222 4.45e-11 65.1
MS.gene061465.t1 AT4G24400 27.686 242 126 9 8 227 8 222 5.56e-11 64.3
MS.gene061465.t1 AT1G18890 28.182 220 132 7 5 213 59 263 5.80e-11 64.7
MS.gene061465.t1 AT3G49370 28.571 217 133 7 8 213 141 346 6.15e-11 64.7
MS.gene061465.t1 AT1G50700 27.273 231 149 7 9 233 73 290 8.14e-11 64.3
MS.gene061465.t1 AT1G50700 27.273 231 149 7 9 233 73 290 8.88e-11 64.3
MS.gene061465.t1 AT1G50700 27.273 231 149 7 9 233 73 290 9.02e-11 64.3

Find 115 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTATATGTAATTGATTT+TGG 0.199306 6.1:+77503433 MS.gene061465:intron
ATTCTTGAGGCGCCTATTTC+GGG 0.201735 6.1:+77504275 MS.gene061465:CDS
GATTCTTGAGGCGCCTATTT+CGG 0.235818 6.1:+77504274 MS.gene061465:CDS
TTTGATCAGCGACCTGATTA+TGG 0.244829 6.1:+77504252 MS.gene061465:CDS
GAGCAAATAACTCCCGAAAT+AGG 0.299908 6.1:-77504287 None:intergenic
GCTTCTTTGTCGCAGCCTTT+AGG 0.310608 6.1:-77504037 None:intergenic
AGAATGCACATACTCTATTC+TGG 0.314521 6.1:-77503220 None:intergenic
ACAAAGCCGCCGGGATGATT+TGG 0.324631 6.1:+77503846 MS.gene061465:CDS
CATTTACCAGGTTTGCCTTC+CGG 0.327698 6.1:-77503296 None:intergenic
AATTTGATTATGTATTTGAT+TGG 0.332820 6.1:+77504806 MS.gene061465:CDS
TTGGGCTTGCAAAACGATAT+CGG 0.336257 6.1:+77503452 MS.gene061465:CDS
TACCGCCTGATGATTTAAAC+TGG 0.353819 6.1:-77505172 None:intergenic
TCAGACAATGCCGCTTCTTC+CGG 0.363687 6.1:+77505140 MS.gene061465:CDS
TCGAAAGAGTGTGAAGTAGA+AGG 0.370593 6.1:-77505410 None:intergenic
GTGCTTGTTATGGATTTGTT+GGG 0.373490 6.1:+77502946 MS.gene061465:CDS
GGAAGACAATGTGCTTGTTA+TGG 0.374985 6.1:+77502936 MS.gene061465:CDS
AAGTTCCAGTTTAAATCATC+AGG 0.379006 6.1:+77505167 MS.gene061465:CDS
GCAAGCTGCAATACTCATCT+TGG 0.385425 6.1:+77503732 MS.gene061465:CDS
TGCTCCCTTGCCCATGCCTA+TGG 0.400254 6.1:-77505484 None:intergenic
GCCCGATTGTTGCTCGCTAC+AGG 0.409927 6.1:-77504975 None:intergenic
TGTGCTTGTTATGGATTTGT+TGG 0.413619 6.1:+77502945 MS.gene061465:CDS
TTCCTGTAGCGAGCAACAAT+CGG 0.414919 6.1:+77504973 MS.gene061465:CDS
TTGGCTTCTGAGAATCATCT+TGG 0.415195 6.1:+77505200 MS.gene061465:CDS
GGGCAGATGCTTACCTCAAT+AGG 0.418445 6.1:-77504098 None:intergenic
CGCCTCAAGAATCCATAATC+AGG 0.420387 6.1:-77504264 None:intergenic
TAGAAAGTTCAAAACCTGTA+TGG 0.426001 6.1:-77503499 None:intergenic
ATCGGTGATAAATTCAAGTT+AGG 0.432066 6.1:+77501412 MS.gene061465:CDS
CGGGATGATTTGGAGTCTCT+TGG 0.432361 6.1:+77503856 MS.gene061465:CDS
TGGGCTTGCAAAACGATATC+GGG 0.435539 6.1:+77503453 MS.gene061465:CDS
TGGGATGTGGCGATTGGTTG+TGG 0.437079 6.1:-77503479 None:intergenic
GGGCAAGGGAGCAGTAAAAT+TGG 0.439859 6.1:+77505494 MS.gene061465:CDS
CACCACTCCATCTTATGCTT+GGG 0.449410 6.1:-77502906 None:intergenic
ATAGAGTATGTGCATTCTAA+AGG 0.458276 6.1:+77503225 MS.gene061465:CDS
CTTGATGTTGGCTGATCAAA+TGG 0.461622 6.1:+77503026 MS.gene061465:CDS
TACTTACGGATATGTGAGGC+TGG 0.464438 6.1:-77504867 None:intergenic
AGTGGACGCGGAAGGTTTCA+AGG 0.472933 6.1:-77505450 None:intergenic
ACATTCATCCGACTACTTGA+AGG 0.474136 6.1:-77505518 None:intergenic
GGTTCAAGCACCAACCTTGT+TGG 0.476423 6.1:-77505019 None:intergenic
CCTCCATAGGGATATAAAAC+CGG 0.477649 6.1:+77503251 MS.gene061465:CDS
ATTCTAAAGGGTTCCTCCAT+AGG 0.479961 6.1:+77503238 MS.gene061465:CDS
TGCAATACTCATCTTGGGAT+TGG 0.480350 6.1:+77503738 MS.gene061465:CDS
TCTGTTGTGTTGCAGGAGAC+TGG 0.481529 6.1:+77502287 MS.gene061465:intron
CAAGCTGCAATACTCATCTT+GGG 0.484146 6.1:+77503733 MS.gene061465:CDS
AAGCTCTATAATATTCTTCA+AGG 0.485336 6.1:+77502344 MS.gene061465:CDS
TAAGATGGAGTGGTGTAGAC+GGG 0.495163 6.1:+77502914 MS.gene061465:CDS
ACACCACTCCATCTTATGCT+TGG 0.495604 6.1:-77502907 None:intergenic
TTGTTGGTTATCAATATCCA+TGG 0.497091 6.1:-77505003 None:intergenic
AGGTCAAAGAATGGCAGTAA+TGG 0.499416 6.1:-77504230 None:intergenic
TCCTGTAGCGAGCAACAATC+GGG 0.501671 6.1:+77504974 MS.gene061465:CDS
TTGTTGCTCGCTACAGGAAC+CGG 0.502364 6.1:-77504969 None:intergenic
GCTTGCATAACGCGCAGTCC+CGG 0.502927 6.1:-77503715 None:intergenic
TAGAGTATGTGCATTCTAAA+GGG 0.503360 6.1:+77503226 MS.gene061465:CDS
CCTTCCCTGGCAAAACCTAA+AGG 0.504434 6.1:+77504022 MS.gene061465:CDS
TAATTGTGTTTAGCCTTCCC+TGG 0.508361 6.1:+77504009 MS.gene061465:intron
CCTCAAAACTGTCTTGATGT+TGG 0.516363 6.1:+77503014 MS.gene061465:CDS
GAAAGTATCAACTCCTATTG+AGG 0.519371 6.1:+77504085 MS.gene061465:CDS
ACTTGGCCGGAAGGCAAACC+TGG 0.520669 6.1:+77503290 MS.gene061465:CDS
TTAGGACGCAAGATCGGAAG+TGG 0.521534 6.1:+77501430 MS.gene061465:CDS
TTCTAAAGGGTTCCTCCATA+GGG 0.522924 6.1:+77503239 MS.gene061465:CDS
AAGATCGGAAGTGGATCCTT+CGG 0.526716 6.1:+77501439 MS.gene061465:CDS
AGAAAGTTCAAAACCTGTAT+GGG 0.527700 6.1:-77503498 None:intergenic
CGGGAGTTATTTGCTCGAGA+AGG 0.530876 6.1:+77504294 MS.gene061465:CDS
GTGGTATCCCAAGCATAAGA+TGG 0.531050 6.1:+77502899 MS.gene061465:CDS
GATAACTTTCTCATGGGACT+TGG 0.535218 6.1:+77503273 MS.gene061465:CDS
CCAATCGCCACATCCCATAC+AGG 0.535975 6.1:+77503485 MS.gene061465:CDS
CGAAAGAGTGTGAAGTAGAA+GGG 0.539972 6.1:-77505409 None:intergenic
ACTTTCTCATGGGACTTGGC+CGG 0.542983 6.1:+77503277 MS.gene061465:CDS
AAGTACGAAGCAAACTCTAC+AGG 0.544026 6.1:-77504207 None:intergenic
CCTATGGTTTGCAGCTTCAG+TGG 0.548768 6.1:-77505468 None:intergenic
TCCTTCGGTGAAATCTATCT+CGG 0.549980 6.1:+77501454 MS.gene061465:CDS
TTCAAGTTAGGACGCAAGAT+CGG 0.551617 6.1:+77501424 MS.gene061465:CDS
TTTGTTGGGGCCTAGTCTTG+AGG 0.553272 6.1:+77502960 MS.gene061465:CDS
TTCAAAACCTGTATGGGATG+TGG 0.553955 6.1:-77503492 None:intergenic
TTAGCTTCATAAAGCAATTG+TGG 0.553963 6.1:-77502323 None:intergenic
CAACAATCGGGCAATGCCCA+TGG 0.556507 6.1:+77504986 MS.gene061465:CDS
AAACCGGATAACTTTCTCAT+GGG 0.561522 6.1:+77503267 MS.gene061465:CDS
GCAAACCATAGGCATGGGCA+AGG 0.564524 6.1:+77505479 MS.gene061465:CDS
GAAGCTGCAAACCATAGGCA+TGG 0.565598 6.1:+77505473 MS.gene061465:CDS
AGATTCATGGATCGAATCAT+CGG 0.566316 6.1:+77501394 None:intergenic
ATAAGATGGAGTGGTGTAGA+CGG 0.572946 6.1:+77502913 MS.gene061465:CDS
ATAATCAGGTCGCTGATCAA+AGG 0.572957 6.1:-77504250 None:intergenic
GCAGCTTCAGTGGACGCGGA+AGG 0.574210 6.1:-77505458 None:intergenic
AAAACCGGATAACTTTCTCA+TGG 0.575825 6.1:+77503266 MS.gene061465:CDS
CCACTGAAGCTGCAAACCAT+AGG 0.576164 6.1:+77505468 MS.gene061465:CDS
AGTCCCATGAGAAAGTTATC+CGG 0.577140 6.1:-77503270 None:intergenic
TGCTTGTTATGGATTTGTTG+GGG 0.580128 6.1:+77502947 MS.gene061465:CDS
GTTTGCAGCTTCAGTGGACG+CGG 0.581258 6.1:-77505462 None:intergenic
GCTGATCAAAGGTCAAAGAA+TGG 0.590024 6.1:-77504239 None:intergenic
ACGAAGCAAACTCTACAGGA+TGG 0.592572 6.1:-77504203 None:intergenic
AAGCTGCAAACCATAGGCAT+GGG 0.597512 6.1:+77505474 MS.gene061465:CDS
TCTCATGGGACTTGGCCGGA+AGG 0.601658 6.1:+77503281 MS.gene061465:CDS
ATTTGTAGAACAAAGCCGCC+GGG 0.602617 6.1:+77503837 MS.gene061465:intron
CCTGTATGGGATGTGGCGAT+TGG 0.602796 6.1:-77503485 None:intergenic
TGTTGGTTATCAATATCCAT+GGG 0.604040 6.1:-77505002 None:intergenic
GAACTTAACACCGGAAGAAG+CGG 0.606399 6.1:-77505150 None:intergenic
AAATTGGTCCTTCAAGTAGT+CGG 0.607497 6.1:+77505510 MS.gene061465:CDS
ACTCTTTCGAAGCATCAAGA+AGG 0.609101 6.1:+77505423 MS.gene061465:CDS
CGAAGCAAACTCTACAGGAT+GGG 0.611082 6.1:-77504202 None:intergenic
ATCCCAAGCATAAGATGGAG+TGG 0.620505 6.1:+77502904 MS.gene061465:CDS
ACCGAGATAGATTTCACCGA+AGG 0.620573 6.1:-77501455 None:intergenic
CAAGAGACTCCAAATCATCC+CGG 0.622494 6.1:-77503855 None:intergenic
TTTAAACTGGAACTTAACAC+CGG 0.623764 6.1:-77505159 None:intergenic
TTCCAGTTTAAATCATCAGG+CGG 0.630569 6.1:+77505170 MS.gene061465:CDS
ACTTACGGATATGTGAGGCT+GGG 0.634330 6.1:-77504866 None:intergenic
CTCTATAATATTCTTCAAGG+AGG 0.636528 6.1:+77502347 MS.gene061465:CDS
TATTTGTAGAACAAAGCCGC+CGG 0.642128 6.1:+77503836 MS.gene061465:intron
CAAACCATAGGCATGGGCAA+GGG 0.646006 6.1:+77505480 MS.gene061465:CDS
CTTGACAGCAACGATCTCGA+AGG 0.646641 6.1:-77501603 None:intergenic
AATATACTTACGGATATGTG+AGG 0.660737 6.1:-77504871 None:intergenic
AAGATGGAGTGGTGTAGACG+GGG 0.662328 6.1:+77502915 MS.gene061465:CDS
GACCTGATTATGGATTCTTG+AGG 0.667363 6.1:+77504262 MS.gene061465:CDS
GAATGCCATACCTTCCTCTG+AGG 0.704652 6.1:-77503897 None:intergenic
ATGGATATTGATAACCAACA+AGG 0.718739 6.1:+77505005 MS.gene061465:CDS
TTATACAGGGGATGTCTCAG+CGG 0.724472 6.1:+77505106 MS.gene061465:intron
GAGACTCCAAATCATCCCGG+CGG 0.750112 6.1:-77503852 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGAAAATTAAAGAAT+TGG - chr6.1:77501643-77501662 None:intergenic 10.0%
!! ATAAACAACATATTAAAATT+TGG - chr6.1:77505358-77505377 None:intergenic 10.0%
!!! AAAAAATTAATATTTTCAGA+TGG - chr6.1:77504939-77504958 None:intergenic 10.0%
!!! AATTCATTAAGTATTAATTT+TGG - chr6.1:77503667-77503686 None:intergenic 10.0%
!!! ACATGTTTTTTTATTTTATT+TGG + chr6.1:77503187-77503206 MS.gene061465:intron 10.0%
!!! ATTCATTAAGTATTAATTTT+GGG - chr6.1:77503666-77503685 None:intergenic 10.0%
!!! CATGTTTTTTTATTTTATTT+GGG + chr6.1:77503188-77503207 MS.gene061465:intron 10.0%
!!! TTATTATTTTTGTAGATTTT+TGG + chr6.1:77505374-77505393 MS.gene061465:intron 10.0%
!! AATTTGATTATGTATTTGAT+TGG + chr6.1:77504806-77504825 MS.gene061465:CDS 15.0%
!! ATAAGAAAATTGATGTTAAA+TGG + chr6.1:77504639-77504658 MS.gene061465:intron 15.0%
!! TAAGAAAATTGATGTTAAAT+GGG + chr6.1:77504640-77504659 MS.gene061465:intron 15.0%
!!! AAAAAATTTGTTTAGCTTAT+TGG + chr6.1:77501812-77501831 MS.gene061465:intron 15.0%
!!! CAGTAAAAATACAATTTTTA+GGG + chr6.1:77502499-77502518 MS.gene061465:intron 15.0%
!!! TCAGTAAAAATACAATTTTT+AGG + chr6.1:77502498-77502517 MS.gene061465:intron 15.0%
!!! TTTTTTTATGAATGAAGTTT+AGG - chr6.1:77504597-77504616 None:intergenic 15.0%
!! ACAACAATGAAAATAATGAA+AGG - chr6.1:77502393-77502412 None:intergenic 20.0%
!! ATAACAAAGAAATAAGCATT+TGG - chr6.1:77504135-77504154 None:intergenic 20.0%
!! ATGAGTCAAACAATAAATTT+CGG - chr6.1:77502080-77502099 None:intergenic 20.0%
!! TAAAGTGAATGAATTAACAA+TGG - chr6.1:77503535-77503554 None:intergenic 20.0%
!! TTATGCAGAAGAAAAAAATA+TGG - chr6.1:77505043-77505062 None:intergenic 20.0%
!!! AAATTTGTTGAAAGTATGTT+TGG - chr6.1:77501924-77501943 None:intergenic 20.0%
!!! AGGTATATGTAATTGATTTT+GGG + chr6.1:77503434-77503453 MS.gene061465:intron 20.0%
!!! AGTATATGTTCTGATTTTTA+CGG + chr6.1:77503979-77503998 MS.gene061465:intron 20.0%
!!! ATTAATATTTTCAGATGGAT+TGG - chr6.1:77504934-77504953 None:intergenic 20.0%
!!! ATTAATTTTGGGTATTTCTA+AGG - chr6.1:77503655-77503674 None:intergenic 20.0%
!!! GAATTAACAATGGATTATAA+TGG - chr6.1:77503525-77503544 None:intergenic 20.0%
!!! TCATCTAAAATGTCAAATAT+CGG - chr6.1:77502551-77502570 None:intergenic 20.0%
!!! TTAATGAATTTTACAACACA+GGG + chr6.1:77503677-77503696 MS.gene061465:intron 20.0%
!!! TTAATTTTGGGTATTTCTAA+GGG - chr6.1:77503654-77503673 None:intergenic 20.0%
!!! TTCATTATTTTCATTGTTGT+GGG + chr6.1:77502393-77502412 MS.gene061465:intron 20.0%
!!! TTTCATTATTTTCATTGTTG+TGG + chr6.1:77502392-77502411 MS.gene061465:intron 20.0%
! AAGCTCTATAATATTCTTCA+AGG + chr6.1:77502344-77502363 MS.gene061465:CDS 25.0%
! AATGATTAATGCTTATACAG+GGG + chr6.1:77505094-77505113 MS.gene061465:intron 25.0%
! ACAATGATTAATGCTTATAC+AGG + chr6.1:77505092-77505111 MS.gene061465:intron 25.0%
! ACTGACTAAAAAACATCATA+AGG - chr6.1:77503086-77503105 None:intergenic 25.0%
! AGAAATGAAATGTGTCAATT+TGG + chr6.1:77502455-77502474 MS.gene061465:intron 25.0%
! ATGAGAATTTGATTGATTGA+AGG - chr6.1:77501486-77501505 None:intergenic 25.0%
! CAATGATTAATGCTTATACA+GGG + chr6.1:77505093-77505112 MS.gene061465:intron 25.0%
! CACACACATAAATATACTTA+CGG - chr6.1:77504884-77504903 None:intergenic 25.0%
! TAACTGTATATTCATTTACC+AGG - chr6.1:77503311-77503330 None:intergenic 25.0%
! TCATTTCTTAAGGATCAAAT+AGG + chr6.1:77502586-77502605 MS.gene061465:intron 25.0%
! TGGGATTTAATTGAAAATGT+TGG + chr6.1:77502856-77502875 MS.gene061465:intron 25.0%
! TTAGTGTATGTTTGATATCA+CGG + chr6.1:77501706-77501725 MS.gene061465:intron 25.0%
! TTCAACATTAACATCAAATC+CGG - chr6.1:77503578-77503597 None:intergenic 25.0%
!! AAGCATTTGGAATAGTTATA+TGG - chr6.1:77504122-77504141 None:intergenic 25.0%
!! AGCATTTGGAATAGTTATAT+GGG - chr6.1:77504121-77504140 None:intergenic 25.0%
!! CTTAATGAATTTTACAACAC+AGG + chr6.1:77503676-77503695 MS.gene061465:intron 25.0%
!! GACATTTTAGATGATTGAAT+CGG + chr6.1:77502557-77502576 MS.gene061465:intron 25.0%
!! TAAGACATTGAAAGTATGTT+TGG - chr6.1:77501791-77501810 None:intergenic 25.0%
!! TTCACAAGTTTGAAACATAA+AGG - chr6.1:77505316-77505335 None:intergenic 25.0%
!! TTTTATGAATGAAGTTTAGG+TGG - chr6.1:77504594-77504613 None:intergenic 25.0%
!!! CAGGTATATGTAATTGATTT+TGG + chr6.1:77503433-77503452 MS.gene061465:intron 25.0%
!!! GGATTTTGTTTAATTAATGC+AGG + chr6.1:77502877-77502896 MS.gene061465:intron 25.0%
!!! TAATTTTTTCTTATTGCAGC+CGG + chr6.1:77504950-77504969 MS.gene061465:intron 25.0%
!!! TTTTGTTTAATTAATGCAGG+TGG + chr6.1:77502880-77502899 MS.gene061465:intron 25.0%
AAATCCGGTAAAAAAAAGAG+GGG - chr6.1:77503563-77503582 None:intergenic 30.0%
AAGTATGTTTGGTATCACTA+TGG - chr6.1:77501913-77501932 None:intergenic 30.0%
AAGTTCCAGTTTAAATCATC+AGG + chr6.1:77505167-77505186 MS.gene061465:CDS 30.0%
AATATACTTACGGATATGTG+AGG - chr6.1:77504874-77504893 None:intergenic 30.0%
AATCGGTCAATTCTAAATGT+AGG - chr6.1:77503345-77503364 None:intergenic 30.0%
AGAAAGTTCAAAACCTGTAT+GGG - chr6.1:77503501-77503520 None:intergenic 30.0%
ATACTTATGTTGCTCTCAAT+AGG - chr6.1:77503964-77503983 None:intergenic 30.0%
ATAGAGTATGTGCATTCTAA+AGG + chr6.1:77503225-77503244 MS.gene061465:CDS 30.0%
ATCGGTCAATTCTAAATGTA+GGG - chr6.1:77503344-77503363 None:intergenic 30.0%
CAAATCCGGTAAAAAAAAGA+GGG - chr6.1:77503564-77503583 None:intergenic 30.0%
CTCTATAATATTCTTCAAGG+AGG + chr6.1:77502347-77502366 MS.gene061465:CDS 30.0%
GCAAAATTCATATTCTGTTG+TGG + chr6.1:77504699-77504718 MS.gene061465:intron 30.0%
GGCATTCTTATCTAGTTATT+TGG + chr6.1:77503913-77503932 MS.gene061465:intron 30.0%
TAGAAAGTTCAAAACCTGTA+TGG - chr6.1:77503502-77503521 None:intergenic 30.0%
TAGAGTATGTGCATTCTAAA+GGG + chr6.1:77503226-77503245 MS.gene061465:CDS 30.0%
TCAAATCCGGTAAAAAAAAG+AGG - chr6.1:77503565-77503584 None:intergenic 30.0%
TTAGCTTCATAAAGCAATTG+TGG - chr6.1:77502326-77502345 None:intergenic 30.0%
TTCAAACTTGTGAAATAGAC+TGG + chr6.1:77505322-77505341 MS.gene061465:intron 30.0%
TTTAAACTGGAACTTAACAC+CGG - chr6.1:77505162-77505181 None:intergenic 30.0%
TTTACTGACAATTGAGATGT+TGG - chr6.1:77502486-77502505 None:intergenic 30.0%
! AATATGAATTTTGCGTATGG+AGG - chr6.1:77504693-77504712 None:intergenic 30.0%
! ATATTGATAACCAACAAGGT+TGG + chr6.1:77505009-77505028 MS.gene061465:intron 30.0%
! ATCGGTGATAAATTCAAGTT+AGG + chr6.1:77501412-77501431 MS.gene061465:CDS 30.0%
! ATGGATATTGATAACCAACA+AGG + chr6.1:77505005-77505024 MS.gene061465:CDS 30.0%
! CAAAAGTATGTTTGGTATCA+CGG - chr6.1:77502236-77502255 None:intergenic 30.0%
! CAGAATATGAATTTTGCGTA+TGG - chr6.1:77504696-77504715 None:intergenic 30.0%
! GCTAAAACCAAAAGTATGTT+TGG - chr6.1:77502244-77502263 None:intergenic 30.0%
! TATTGGCATGTTTTGTATCA+TGG + chr6.1:77501829-77501848 MS.gene061465:intron 30.0%
! TCGGCATTTTTCATTTCTTA+AGG + chr6.1:77502576-77502595 MS.gene061465:intron 30.0%
! TGCAATTTGTTTGATGTGAA+GGG - chr6.1:77503787-77503806 None:intergenic 30.0%
! TGTTGGTTATCAATATCCAT+GGG - chr6.1:77505005-77505024 None:intergenic 30.0%
! TTGCAATTTGTTTGATGTGA+AGG - chr6.1:77503788-77503807 None:intergenic 30.0%
! TTGCTATTGTTATTGTTGCT+GGG + chr6.1:77502837-77502856 MS.gene061465:intron 30.0%
! TTGTTGGTTATCAATATCCA+TGG - chr6.1:77505006-77505025 None:intergenic 30.0%
! TTTTGACGTGTTTATTGTTC+TGG + chr6.1:77502009-77502028 MS.gene061465:intron 30.0%
!!! ATTTGTCTGTTGTTTTGTGT+AGG + chr6.1:77504167-77504186 MS.gene061465:intron 30.0%
AAAACCGGATAACTTTCTCA+TGG + chr6.1:77503266-77503285 MS.gene061465:CDS 35.0%
AAACCGGATAACTTTCTCAT+GGG + chr6.1:77503267-77503286 MS.gene061465:CDS 35.0%
AAAGTATGTTTGGTATCACC+GGG - chr6.1:77501781-77501800 None:intergenic 35.0%
AAATTGGTCCTTCAAGTAGT+CGG + chr6.1:77505510-77505529 MS.gene061465:CDS 35.0%
AATGTTGTCAATCGCAGATT+GGG - chr6.1:77502766-77502785 None:intergenic 35.0%
ACAAAAAGATCCTCAAGACT+AGG - chr6.1:77502973-77502992 None:intergenic 35.0%
AGAATGCACATACTCTATTC+TGG - chr6.1:77503223-77503242 None:intergenic 35.0%
AGAATGTAAGTCGTCTTACT+TGG + chr6.1:77505225-77505244 MS.gene061465:intron 35.0%
AGATACTGTGATTGTGATTC+TGG + chr6.1:77501882-77501901 MS.gene061465:intron 35.0%
AGGGAGAACAAAAACTTAAC+CGG + chr6.1:77503696-77503715 MS.gene061465:intron 35.0%
ATAATCACATGACAAGACAG+TGG - chr6.1:77503130-77503149 None:intergenic 35.0%
ATCACAATCACAGTATCTCA+TGG - chr6.1:77501880-77501899 None:intergenic 35.0%
ATCATCAGGCGGTAAAAATT+TGG + chr6.1:77505181-77505200 MS.gene061465:CDS 35.0%
ATGTGTTATGGAAATCCTCA+AGG - chr6.1:77504550-77504569 None:intergenic 35.0%
ATTCCATTCCACAAAGATGT+GGG + chr6.1:77504451-77504470 MS.gene061465:intron 35.0%
GGCACAAATAACAATACTCT+GGG - chr6.1:77503109-77503128 None:intergenic 35.0%
GTCATAAACCAGAAATGAGT+GGG - chr6.1:77504778-77504797 None:intergenic 35.0%
TACGAAAGCCAGAACTAAAA+GGG - chr6.1:77503062-77503081 None:intergenic 35.0%
TATTCCATTCCACAAAGATG+TGG + chr6.1:77504450-77504469 MS.gene061465:intron 35.0%
TCATAAACCAGAAATGAGTG+GGG - chr6.1:77504777-77504796 None:intergenic 35.0%
TCATGGTTCACTATGATTCT+TGG - chr6.1:77501863-77501882 None:intergenic 35.0%
TCGTCTTACTTGGAGTAAAA+AGG + chr6.1:77505235-77505254 MS.gene061465:intron 35.0%
TGGCACAAATAACAATACTC+TGG - chr6.1:77503110-77503129 None:intergenic 35.0%
TGTCATAAACCAGAAATGAG+TGG - chr6.1:77504779-77504798 None:intergenic 35.0%
TTCCAGTTTAAATCATCAGG+CGG + chr6.1:77505170-77505189 MS.gene061465:CDS 35.0%
TTGTCAAGTATCTGCTATAG+CGG + chr6.1:77502631-77502650 MS.gene061465:intron 35.0%
! CGTGATACCAAACATACTTT+TGG + chr6.1:77502234-77502253 MS.gene061465:intron 35.0%
! GAAAGTATGTTTGGTATCAC+CGG - chr6.1:77501782-77501801 None:intergenic 35.0%
! TTGATTTTCTGTTGTGTTGC+AGG + chr6.1:77502280-77502299 MS.gene061465:intron 35.0%
!! ACTCATTTCTGGTTTATGAC+AGG + chr6.1:77504778-77504797 MS.gene061465:intron 35.0%
!! CAACATCAAGACAGTTTTGA+GGG - chr6.1:77503016-77503035 None:intergenic 35.0%
!! CTTGCTATTGTTATTGTTGC+TGG + chr6.1:77502836-77502855 MS.gene061465:intron 35.0%
!! GAAAGTATCAACTCCTATTG+AGG + chr6.1:77504085-77504104 MS.gene061465:CDS 35.0%
!! GAATGTTGGTTCAGTTGATA+TGG + chr6.1:77504417-77504436 MS.gene061465:intron 35.0%
!! GAGGATCTTTTTGTTTACTG+TGG + chr6.1:77502979-77502998 MS.gene061465:CDS 35.0%
!! GTGAACTACATTGATTTGCA+TGG + chr6.1:77502186-77502205 MS.gene061465:intron 35.0%
!! GTGCTTGTTATGGATTTGTT+GGG + chr6.1:77502946-77502965 MS.gene061465:CDS 35.0%
!! TATCCGGTTTTATATCCCTA+TGG - chr6.1:77503257-77503276 None:intergenic 35.0%
!! TGCTTGTTATGGATTTGTTG+GGG + chr6.1:77502947-77502966 MS.gene061465:CDS 35.0%
!! TGTGCTTGTTATGGATTTGT+TGG + chr6.1:77502945-77502964 MS.gene061465:CDS 35.0%
!!! TTCTCCCCTCTTTTTTTTAC+CGG + chr6.1:77503556-77503575 MS.gene061465:intron 35.0%
AAAGCCAGAACTAAAAGGGA+TGG - chr6.1:77503058-77503077 None:intergenic 40.0%
AAGCCAGAACTAAAAGGGAT+GGG - chr6.1:77503057-77503076 None:intergenic 40.0%
AAGTACGAAGCAAACTCTAC+AGG - chr6.1:77504210-77504229 None:intergenic 40.0%
AAGTATGTTTGGTATCACCG+GGG - chr6.1:77501780-77501799 None:intergenic 40.0%
ACATTCATCCGACTACTTGA+AGG - chr6.1:77505521-77505540 None:intergenic 40.0%
AGCTCAAGGAATGACAGAAT+CGG - chr6.1:77503362-77503381 None:intergenic 40.0%
AGGTCAAAGAATGGCAGTAA+TGG - chr6.1:77504233-77504252 None:intergenic 40.0%
AGGTGTTCCTGTATTTACTC+TGG + chr6.1:77502606-77502625 MS.gene061465:intron 40.0%
AGTCCCATGAGAAAGTTATC+CGG - chr6.1:77503273-77503292 None:intergenic 40.0%
ATAACACATATTGAGCCTGC+GGG + chr6.1:77504561-77504580 MS.gene061465:intron 40.0%
ATAAGATGGAGTGGTGTAGA+CGG + chr6.1:77502913-77502932 MS.gene061465:CDS 40.0%
ATAATCAGGTCGCTGATCAA+AGG - chr6.1:77504253-77504272 None:intergenic 40.0%
ATGTGATTATGATGCCAAGC+GGG + chr6.1:77503140-77503159 MS.gene061465:intron 40.0%
ATTCCTTGCTACTGAATCTG+CGG + chr6.1:77505262-77505281 MS.gene061465:intron 40.0%
CAAGCTGCAATACTCATCTT+GGG + chr6.1:77503733-77503752 MS.gene061465:CDS 40.0%
CAATGTTGTCAATCGCAGAT+TGG - chr6.1:77502767-77502786 None:intergenic 40.0%
CATAACACATATTGAGCCTG+CGG + chr6.1:77504560-77504579 MS.gene061465:intron 40.0%
CATGTGATTATGATGCCAAG+CGG + chr6.1:77503139-77503158 MS.gene061465:intron 40.0%
CCTCAAAACTGTCTTGATGT+TGG + chr6.1:77503014-77503033 MS.gene061465:CDS 40.0%
CCTCCATAGGGATATAAAAC+CGG + chr6.1:77503251-77503270 MS.gene061465:CDS 40.0%
CTACGAAAGCCAGAACTAAA+AGG - chr6.1:77503063-77503082 None:intergenic 40.0%
GACAACACCAGAGTAAATAC+AGG - chr6.1:77502616-77502635 None:intergenic 40.0%
GACCTGATTATGGATTCTTG+AGG + chr6.1:77504262-77504281 MS.gene061465:CDS 40.0%
GAGCAAATAACTCCCGAAAT+AGG - chr6.1:77504290-77504309 None:intergenic 40.0%
GATAACTTTCTCATGGGACT+TGG + chr6.1:77503273-77503292 MS.gene061465:CDS 40.0%
GATTTGAGGACTCTGATAGT+GGG + chr6.1:77504490-77504509 MS.gene061465:intron 40.0%
GCTGATCAAAGGTCAAAGAA+TGG - chr6.1:77504242-77504261 None:intergenic 40.0%
GGGAGAACAAAAACTTAACC+GGG + chr6.1:77503697-77503716 MS.gene061465:intron 40.0%
TACCGCCTGATGATTTAAAC+TGG - chr6.1:77505175-77505194 None:intergenic 40.0%
TATTTGTAGAACAAAGCCGC+CGG + chr6.1:77503836-77503855 MS.gene061465:intron 40.0%
TCAACTGAACCAACATTCGT+TGG - chr6.1:77504415-77504434 None:intergenic 40.0%
TCCTTCGGTGAAATCTATCT+CGG + chr6.1:77501454-77501473 MS.gene061465:CDS 40.0%
TGAGTGGGGATGTTACATTT+CGG - chr6.1:77504763-77504782 None:intergenic 40.0%
TGATTTGAGGACTCTGATAG+TGG + chr6.1:77504489-77504508 MS.gene061465:intron 40.0%
TGCAATACTCATCTTGGGAT+TGG + chr6.1:77503738-77503757 MS.gene061465:CDS 40.0%
TGTACGAGATACTGTGATTC+TGG + chr6.1:77501749-77501768 MS.gene061465:intron 40.0%
TTCAAAACCTGTATGGGATG+TGG - chr6.1:77503495-77503514 None:intergenic 40.0%
TTGGGCTTGCAAAACGATAT+CGG + chr6.1:77503452-77503471 MS.gene061465:CDS 40.0%
TTGTTACCGCAATGCATGTT+TGG + chr6.1:77502137-77502156 MS.gene061465:intron 40.0%
TTTGATCAGCGACCTGATTA+TGG + chr6.1:77504252-77504271 MS.gene061465:CDS 40.0%
! ACTCTTTCGAAGCATCAAGA+AGG + chr6.1:77505423-77505442 MS.gene061465:CDS 40.0%
! ATTCTAAAGGGTTCCTCCAT+AGG + chr6.1:77503238-77503257 MS.gene061465:CDS 40.0%
! CCAACATCAAGACAGTTTTG+AGG - chr6.1:77503017-77503036 None:intergenic 40.0%
! CGAAAGAGTGTGAAGTAGAA+GGG - chr6.1:77505412-77505431 None:intergenic 40.0%
! CGGGAAGTGTGCATTTATAA+AGG + chr6.1:77503159-77503178 MS.gene061465:intron 40.0%
! CTTGATGTTGGCTGATCAAA+TGG + chr6.1:77503026-77503045 MS.gene061465:CDS 40.0%
! GGAAGACAATGTGCTTGTTA+TGG + chr6.1:77502936-77502955 MS.gene061465:CDS 40.0%
! TAATTGTGTTTAGCCTTCCC+TGG + chr6.1:77504009-77504028 MS.gene061465:intron 40.0%
! TCGAAAGAGTGTGAAGTAGA+AGG - chr6.1:77505413-77505432 None:intergenic 40.0%
! TTCAAGTTAGGACGCAAGAT+CGG + chr6.1:77501424-77501443 MS.gene061465:CDS 40.0%
! TTCTAAAGGGTTCCTCCATA+GGG + chr6.1:77503239-77503258 MS.gene061465:CDS 40.0%
! TTGGCTTCTGAGAATCATCT+TGG + chr6.1:77505200-77505219 MS.gene061465:CDS 40.0%
! TTTTGTACTTCCTCAGAGGA+AGG + chr6.1:77503887-77503906 MS.gene061465:CDS 40.0%
AAGATCGGAAGTGGATCCTT+CGG + chr6.1:77501439-77501458 MS.gene061465:CDS 45.0%
AAGCTGCAAACCATAGGCAT+GGG + chr6.1:77505474-77505493 MS.gene061465:CDS 45.0%
AATCACCAGCCAACGAATGT+TGG + chr6.1:77504403-77504422 MS.gene061465:intron 45.0%
ACACCACTCCATCTTATGCT+TGG - chr6.1:77502910-77502929 None:intergenic 45.0%
ACCGAGATAGATTTCACCGA+AGG - chr6.1:77501458-77501477 None:intergenic 45.0%
ACGAAGCAAACTCTACAGGA+TGG - chr6.1:77504206-77504225 None:intergenic 45.0%
ACTTACGGATATGTGAGGCT+GGG - chr6.1:77504869-77504888 None:intergenic 45.0%
AGCCAGAACTAAAAGGGATG+GGG - chr6.1:77503056-77503075 None:intergenic 45.0%
ATAAATGCACACTTCCCGCT+TGG - chr6.1:77503157-77503176 None:intergenic 45.0%
ATCCCAAGCATAAGATGGAG+TGG + chr6.1:77502904-77502923 MS.gene061465:CDS 45.0%
ATTTGTAGAACAAAGCCGCC+GGG + chr6.1:77503837-77503856 MS.gene061465:intron 45.0%
CAAGAGACTCCAAATCATCC+CGG - chr6.1:77503858-77503877 None:intergenic 45.0%
CACCACTCCATCTTATGCTT+GGG - chr6.1:77502909-77502928 None:intergenic 45.0%
CATTCGAACCCACATCTTTG+TGG - chr6.1:77504462-77504481 None:intergenic 45.0%
CATTTACCAGGTTTGCCTTC+CGG - chr6.1:77503299-77503318 None:intergenic 45.0%
CGAAGCAAACTCTACAGGAT+GGG - chr6.1:77504205-77504224 None:intergenic 45.0%
CGCAGGCTCAATATGTGTTA+TGG - chr6.1:77504562-77504581 None:intergenic 45.0%
CGCCTCAAGAATCCATAATC+AGG - chr6.1:77504267-77504286 None:intergenic 45.0%
CTGACACCAAACATGCATTG+CGG - chr6.1:77502146-77502165 None:intergenic 45.0%
GAACCCACATCTTTGTGGAA+TGG - chr6.1:77504457-77504476 None:intergenic 45.0%
GAACTTAACACCGGAAGAAG+CGG - chr6.1:77505153-77505172 None:intergenic 45.0%
GATGAGAAGAGCAGAGGTAA+AGG - chr6.1:77503632-77503651 None:intergenic 45.0%
GATTCTGTCATTCCTTGAGC+TGG + chr6.1:77503361-77503380 MS.gene061465:intron 45.0%
GCAAGCTGCAATACTCATCT+TGG + chr6.1:77503732-77503751 MS.gene061465:CDS 45.0%
GGCTCAATAAGCGCTTATAG+AGG - chr6.1:77504529-77504548 None:intergenic 45.0%
GTAACATCCCCACTCATTTC+TGG + chr6.1:77504767-77504786 MS.gene061465:intron 45.0%
GTGCTTGTGTTGTACATGTC+AGG + chr6.1:77503414-77503433 MS.gene061465:intron 45.0%
GTGGTATCCCAAGCATAAGA+TGG + chr6.1:77502899-77502918 MS.gene061465:CDS 45.0%
GTGTGTGTGTGTGTGTAGAT+TGG + chr6.1:77504897-77504916 MS.gene061465:intron 45.0%
TAAGATGGAGTGGTGTAGAC+GGG + chr6.1:77502914-77502933 MS.gene061465:CDS 45.0%
TAAGCGCTTATTGAGCCTTG+AGG + chr6.1:77504532-77504551 MS.gene061465:intron 45.0%
TACTTACGGATATGTGAGGC+TGG - chr6.1:77504870-77504889 None:intergenic 45.0%
TACTTCCTCAGAGGAAGGTA+TGG + chr6.1:77503892-77503911 MS.gene061465:intron 45.0%
TCGATGAAACAACCAGCTCA+AGG - chr6.1:77503376-77503395 None:intergenic 45.0%
TGGGCTTGCAAAACGATATC+GGG + chr6.1:77503453-77503472 MS.gene061465:CDS 45.0%
TTATACAGGGGATGTCTCAG+CGG + chr6.1:77505106-77505125 MS.gene061465:intron 45.0%
TTCCTGTAGCGAGCAACAAT+CGG + chr6.1:77504973-77504992 MS.gene061465:CDS 45.0%
! ATTCTTGAGGCGCCTATTTC+GGG + chr6.1:77504275-77504294 MS.gene061465:CDS 45.0%
! CATTCGTTGGCTGGTGATTT+AGG - chr6.1:77504402-77504421 None:intergenic 45.0%
! CTCTACTCTTTTGTGACTGC+TGG - chr6.1:77504846-77504865 None:intergenic 45.0%
! GATTCTTGAGGCGCCTATTT+CGG + chr6.1:77504274-77504293 MS.gene061465:CDS 45.0%
! GTGCTTTTGTACTTCCTCAG+AGG + chr6.1:77503883-77503902 MS.gene061465:CDS 45.0%
!! CCGGTTTTATATCCCTATGG+AGG - chr6.1:77503254-77503273 None:intergenic 45.0%
AAGATGGAGTGGTGTAGACG+GGG + chr6.1:77502915-77502934 MS.gene061465:CDS 50.0%
ACTTTCTCATGGGACTTGGC+CGG + chr6.1:77503277-77503296 MS.gene061465:CDS 50.0%
CAAACCATAGGCATGGGCAA+GGG + chr6.1:77505480-77505499 MS.gene061465:CDS 50.0%
CAGAGTCCTCAAATCAGCCA+CGG - chr6.1:77504485-77504504 None:intergenic 50.0%
CCACTGAAGCTGCAAACCAT+AGG + chr6.1:77505468-77505487 MS.gene061465:CDS 50.0%
CCTTCCCTGGCAAAACCTAA+AGG + chr6.1:77504022-77504041 MS.gene061465:CDS 50.0%
CGGGAGTTATTTGCTCGAGA+AGG + chr6.1:77504294-77504313 MS.gene061465:CDS 50.0%
CTAAGGGATGAGAAGAGCAG+AGG - chr6.1:77503638-77503657 None:intergenic 50.0%
CTGAACCAACATTCGTTGGC+TGG - chr6.1:77504411-77504430 None:intergenic 50.0%
CTGTGATTCTGGCATATCCC+CGG + chr6.1:77501760-77501779 MS.gene061465:intron 50.0%
CTTGACAGCAACGATCTCGA+AGG - chr6.1:77501606-77501625 None:intergenic 50.0%
GAAGCTGCAAACCATAGGCA+TGG + chr6.1:77505473-77505492 MS.gene061465:CDS 50.0%
GAATGCCATACCTTCCTCTG+AGG - chr6.1:77503900-77503919 None:intergenic 50.0%
GCCAGAACTAAAAGGGATGG+GGG - chr6.1:77503055-77503074 None:intergenic 50.0%
GCTTCTTTGTCGCAGCCTTT+AGG - chr6.1:77504040-77504059 None:intergenic 50.0%
GGGCAAGGGAGCAGTAAAAT+TGG + chr6.1:77505494-77505513 MS.gene061465:CDS 50.0%
GGGCAGATGCTTACCTCAAT+AGG - chr6.1:77504101-77504120 None:intergenic 50.0%
GGTTCAAGCACCAACCTTGT+TGG - chr6.1:77505022-77505041 None:intergenic 50.0%
GTTCCGCAGATTCAGTAGCA+AGG - chr6.1:77505268-77505287 None:intergenic 50.0%
TCCTGTAGCGAGCAACAATC+GGG + chr6.1:77504974-77504993 MS.gene061465:CDS 50.0%
TCTGTTGTGTTGCAGGAGAC+TGG + chr6.1:77502287-77502306 MS.gene061465:intron 50.0%
TTAGGACGCAAGATCGGAAG+TGG + chr6.1:77501430-77501449 MS.gene061465:CDS 50.0%
TTGTTGCTCGCTACAGGAAC+CGG - chr6.1:77504972-77504991 None:intergenic 50.0%
! CCTATGGTTTGCAGCTTCAG+TGG - chr6.1:77505471-77505490 None:intergenic 50.0%
! CGGGATGATTTGGAGTCTCT+TGG + chr6.1:77503856-77503875 MS.gene061465:CDS 50.0%
! TCAGACAATGCCGCTTCTTC+CGG + chr6.1:77505140-77505159 MS.gene061465:CDS 50.0%
!! CCTTTAGGTTTTGCCAGGGA+AGG - chr6.1:77504025-77504044 None:intergenic 50.0%
!! GCAGCCTTTAGGTTTTGCCA+GGG - chr6.1:77504029-77504048 None:intergenic 50.0%
!! TTTGTTGGGGCCTAGTCTTG+AGG + chr6.1:77502960-77502979 MS.gene061465:CDS 50.0%
!!! ACCCCCATCCCTTTTAGTTC+TGG + chr6.1:77503051-77503070 MS.gene061465:intron 50.0%
ACAAAGCCGCCGGGATGATT+TGG + chr6.1:77503846-77503865 MS.gene061465:CDS 55.0%
AGATGTGGGTTCGAATGCCG+TGG + chr6.1:77504465-77504484 MS.gene061465:intron 55.0%
AGTGGACGCGGAAGGTTTCA+AGG - chr6.1:77505453-77505472 None:intergenic 55.0%
CAACAATCGGGCAATGCCCA+TGG + chr6.1:77504986-77505005 MS.gene061465:CDS 55.0%
CCAATCGCCACATCCCATAC+AGG + chr6.1:77503485-77503504 MS.gene061465:CDS 55.0%
CCTGTATGGGATGTGGCGAT+TGG - chr6.1:77503488-77503507 None:intergenic 55.0%
GAGACTCCAAATCATCCCGG+CGG - chr6.1:77503855-77503874 None:intergenic 55.0%
GCAAACCATAGGCATGGGCA+AGG + chr6.1:77505479-77505498 MS.gene061465:CDS 55.0%
GTTTGCAGCTTCAGTGGACG+CGG - chr6.1:77505465-77505484 None:intergenic 55.0%
! TGGGATGTGGCGATTGGTTG+TGG - chr6.1:77503482-77503501 None:intergenic 55.0%
!! CGAATGCCGTGGCTGATTTG+AGG + chr6.1:77504476-77504495 MS.gene061465:intron 55.0%
!! CGCAGCCTTTAGGTTTTGCC+AGG - chr6.1:77504030-77504049 None:intergenic 55.0%
!! CTATAGCGGTGCTATAGCGC+TGG + chr6.1:77502645-77502664 MS.gene061465:intron 55.0%
!! TTAGGTGGATTGAGTCCCGC+AGG - chr6.1:77504579-77504598 None:intergenic 55.0%
ACTTGGCCGGAAGGCAAACC+TGG + chr6.1:77503290-77503309 MS.gene061465:CDS 60.0%
GCCCGATTGTTGCTCGCTAC+AGG - chr6.1:77504978-77504997 None:intergenic 60.0%
GCTTGCATAACGCGCAGTCC+CGG - chr6.1:77503718-77503737 None:intergenic 60.0%
TCTCATGGGACTTGGCCGGA+AGG + chr6.1:77503281-77503300 MS.gene061465:CDS 60.0%
TGCTCCCTTGCCCATGCCTA+TGG - chr6.1:77505487-77505506 None:intergenic 60.0%
GCAGCTTCAGTGGACGCGGA+AGG - chr6.1:77505461-77505480 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 77501400 77505565 77501400 ID=MS.gene061465
chr6.1 mRNA 77501400 77505565 77501400 ID=MS.gene061465.t1;Parent=MS.gene061465
chr6.1 exon 77501400 77501475 77501400 ID=MS.gene061465.t1.exon1;Parent=MS.gene061465.t1
chr6.1 CDS 77501400 77501475 77501400 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77501588 77501628 77501588 ID=MS.gene061465.t1.exon2;Parent=MS.gene061465.t1
chr6.1 CDS 77501588 77501628 77501588 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77502302 77502371 77502302 ID=MS.gene061465.t1.exon3;Parent=MS.gene061465.t1
chr6.1 CDS 77502302 77502371 77502302 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77502899 77503047 77502899 ID=MS.gene061465.t1.exon4;Parent=MS.gene061465.t1
chr6.1 CDS 77502899 77503047 77502899 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77503216 77503311 77503216 ID=MS.gene061465.t1.exon5;Parent=MS.gene061465.t1
chr6.1 CDS 77503216 77503311 77503216 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77503436 77503506 77503436 ID=MS.gene061465.t1.exon6;Parent=MS.gene061465.t1
chr6.1 CDS 77503436 77503506 77503436 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77503698 77503759 77503698 ID=MS.gene061465.t1.exon7;Parent=MS.gene061465.t1
chr6.1 CDS 77503698 77503759 77503698 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77503845 77503908 77503845 ID=MS.gene061465.t1.exon8;Parent=MS.gene061465.t1
chr6.1 CDS 77503845 77503908 77503845 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77504022 77504106 77504022 ID=MS.gene061465.t1.exon9;Parent=MS.gene061465.t1
chr6.1 CDS 77504022 77504106 77504022 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77504189 77504315 77504189 ID=MS.gene061465.t1.exon10;Parent=MS.gene061465.t1
chr6.1 CDS 77504189 77504315 77504189 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77504800 77504882 77504800 ID=MS.gene061465.t1.exon11;Parent=MS.gene061465.t1
chr6.1 CDS 77504800 77504882 77504800 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77504969 77505026 77504969 ID=MS.gene061465.t1.exon12;Parent=MS.gene061465.t1
chr6.1 CDS 77504969 77505026 77504969 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77505114 77505229 77505114 ID=MS.gene061465.t1.exon13;Parent=MS.gene061465.t1
chr6.1 CDS 77505114 77505229 77505114 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
chr6.1 exon 77505389 77505565 77505389 ID=MS.gene061465.t1.exon14;Parent=MS.gene061465.t1
chr6.1 CDS 77505389 77505565 77505389 ID=cds.MS.gene061465.t1;Parent=MS.gene061465.t1
Gene Sequence

>MS.gene061465

ATGGATCGAATCATCGGTGATAAATTCAAGTTAGGACGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGGTCTCTTCCTTCAATCAATCAAATTCTCATTTCATTTTTTTTTATTTTTTTATTATTTGTTTGTTTTTTCGTGTTTTGATTTTGATTTTTATTCAATTTTATGATTTTGCAGCTACTCATATTGATACCTTCGAGATCGTTGCTGTCAAGATCGTACGTCTCATCCAATTCTTTAATTTTCATATTTTTGTGTAATTTAATTTGAATTTGTGTAAATTGAAATGACTTGTTTAGTGTATGTTTGATATCACGGTAGATTTGTCAGAATCACAGTGTACGAGATACTGTGATTCTGGCATATCCCCGGTGATACCAAACATACTTTCAATGTCTTAAAAAAAATTTGTTTAGCTTATTGGCATGTTTTGTATCATGGTAGATTTGCCAAGAATCATAGTGAACCATGAGATACTGTGATTGTGATTCTGGCATATCCATAGTGATACCAAACATACTTTCAACAAATTTGCTAAATTAAATTGAATTGTTATCTATGTTATTGACATATTTTGTATCGATACTAGTAAAATTTATTTTGACGTGTTTATTGTTCTGGAGTAGAATTTATTTTGTCTACAGAAGCTAAGATGTGATTTTTACACCGAAATTTATTGTTTGACTCATTTTTACATTCAACTCACTTTTTAACTAAAATCAATTTTTGTTACCGCAATGCATGTTTGGTGTCAGAATGATTTGTCAGAATCACTGTGAACTACATTGATTTGCATGGTTTATTGTGATTTTGACATATTCACCGTGATACCAAACATACTTTTGGTTTTAGCTTAGTTTTTAATTTTGTTGATTTTCTGTTGTGTTGCAGGAGACTGGTAAAACGAAGCATCCACAATTGCTTTATGAAGCTAAGCTCTATAATATTCTTCAAGGAGGAAGTATGTTTCTTTCTTTTTCCTTTCATTATTTTCATTGTTGTGGGCACAACTTGAGATTAAACGCGTAGTTTATTTGATTGTTGAGAAATGAAATGTGTCAATTTGGATCTTCCAACATCTCAATTGTCAGTAAAAATACAATTTTTAGGGATATTTTAGTTTCTGTCAAGTTTTGTCCGATATTTGACATTTTAGATGATTGAATCGGCATTTTTCATTTCTTAAGGATCAAATAGGTGTTCCTGTATTTACTCTGGTGTTGTCAAGTATCTGCTATAGCGGTGCTATAGCGCTGGAGCGTAGTAACAAATTGCTATTGTTCTGCAATACAATGTTTAGTACAAAATGTTTGTCAAATAACAATTTGAAAAGAAAAAATAAAACACTTTTTCCCAATCTGCGATTGACAACATTGATTTACTCTAATAACATTAACACATTTAAGCAATAAGTTTATTTGCGTTCTTGCTATTGTTATTGTTGCTGGGATTTAATTGAAAATGTTGGATTTTGTTTAATTAATGCAGGTGGTATCCCAAGCATAAGATGGAGTGGTGTAGACGGGGAAGACAATGTGCTTGTTATGGATTTGTTGGGGCCTAGTCTTGAGGATCTTTTTGTTTACTGTGGAAGAAAATTCTCCCTCAAAACTGTCTTGATGTTGGCTGATCAAATGGTAACCCCCATCCCTTTTAGTTCTGGCTTTCGTAGCCTTATGATGTTTTTTAGTCAGTCCCAGAGTATTGTTATTTGTGCCACTGTCTTGTCATGTGATTATGATGCCAAGCGGGAAGTGTGCATTTATAAAGGTATTAACATGTTTTTTTATTTTATTTGGGTGCAGATGACCAGAATAGAGTATGTGCATTCTAAAGGGTTCCTCCATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGCCGGAAGGCAAACCTGGTAAATGAATATACAGTTAATAATTGTTTCCCTACATTTAGAATTGACCGATTCTGTCATTCCTTGAGCTGGTTGTTTCATCGAATTGATGTGCTGTATTGTGTGCTTGTGTTGTACATGTCAGGTATATGTAATTGATTTTGGGCTTGCAAAACGATATCGGGACTCCACAACCAATCGCCACATCCCATACAGGTTTTGAACTTTCTACCATTATAATCCATTGTTAATTCATTCACTTTATTTCTCCCCTCTTTTTTTTACCGGATTTGATGTTAATGTTGAAAATTTCTTCTGATTTATGTGTAGACTTCTTTCCTTTACCTCTGCTCTTCTCATCCCTTAGAAATACCCAAAATTAATACTTAATGAATTTTACAACACAGGGAGAACAAAAACTTAACCGGGACTGCGCGTTATGCAAGCTGCAATACTCATCTTGGGATTGGTAAGTCAGAAGAAATTATTTAAGCCCTTCACATCAAACAAATTGCAATTATTTTCTTTATGTTAATTGTCTATTTTATTTGTAGAACAAAGCCGCCGGGATGATTTGGAGTCTCTTGGATACGTGCTTTTGTACTTCCTCAGAGGAAGGTATGGCATTCTTATCTAGTTATTTGGCTTCTAGAAGCAATTTTTGCATTTACCTATTGAGAGCAACATAAGTATATGTTCTGATTTTTACGGCACTAAATAATTGTGTTTAGCCTTCCCTGGCAAAACCTAAAGGCTGCGACAAAGAAGCAGAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTAAGCATCTGCCCATATAACTATTCCAAATGCTTATTTCTTTGTTATCATCACAATCTTATTTGTCTGTTGTTTTGTGTAGGTTTTATGCAAATCCCATCCTGTAGAGTTTGCTTCGTACTTCCATTACTGCCATTCTTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGGGAGTTATTTGCTCGAGAAGGTGATTGAACATGTTCATCAAGTCATCTTTATATTCTTCACATTTACATGTTTAGTGTTGTGCAACACTAGACATGTTCAAAGCCTAAATCACCAGCCAACGAATGTTGGTTCAGTTGATATGGATTCAACTCATATTCCATTCCACAAAGATGTGGGTTCGAATGCCGTGGCTGATTTGAGGACTCTGATAGTGGGTAATATGTAAGTGCCTCTATAAGCGCTTATTGAGCCTTGAGGATTTCCATAACACATATTGAGCCTGCGGGACTCAATCCACCTAAACTTCATTCATAAAAAAAAAAAAAAAAAAAAAAAAAAATCATAAGAAAATTGATGTTAAATGGGCAGTTTGTTTTTATCAACTTACGTGTTCCTCCATACGCAAAATTCATATTCTGTTGTGGTAAAGTTAGCTGAATTTGTCATTGTTTTCACATCTACGCCGAAATGTAACATCCCCACTCATTTCTGGTTTATGACAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAGCAGTCACAAAAGAGTAGAGCCCAGCCTCACATATCCGTAAGTATATTTATGTGTGTGTGTGTGTGTAGATTGGTGTCGAGTCTTCCAATCCATCTGAAAATATTAATTTTTTCTTATTGCAGCCGGTTCCTGTAGCGAGCAACAATCGGGCAATGCCCATGGATATTGATAACCAACAAGGTTGGTGCTTGAACCATATTTTTTTCTTCTGCATAATAAAATATCTTGTTCATTATTACTAATTGACAATGATTAATGCTTATACAGGGGATGTCTCAGCGGAGCAGATTAGATCAGACAATGCCGCTTCTTCCGGTGTTAAGTTCCAGTTTAAATCATCAGGCGGTAAAAATTTGGCTTCTGAGAATCATCTTGGCAAGAATGTAAGTCGTCTTACTTGGAGTAAAAAGGTTTCATTCCTTGCTACTGAATCTGCGGAACACTGAGTCACAATTCTTTAGTCAAACCTTTATGTTTCAAACTTGTGAAATAGACTGGTGTTTAATGACCAAATTTTAATATGTTGTTTATTATTTTTGTAGATTTTTGGTGAAGCAACTATCCCTTCTACTTCACACTCTTTCGAAGCATCAAGAAGGAACTCCTTGAAACCTTCCGCGTCCACTGAAGCTGCAAACCATAGGCATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATGAATGTTCTGCACATAAGTTCTGCTAAATAA
Protein sequence

>MS.gene061465.t1

MDRIIGDKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRAQPHISPVPVASNNRAMPMDIDNQQGDVSAEQIRSDNAASSGVKFQFKSSGGKNLASENHLGKNIFGEATIPSTSHSFEASRRNSLKPSASTEAANHRHGQGSSKIGPSSSRMNVLHISSAK