AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049745

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049745.t1 MTR_4g056520 96.368 413 15 0 1 413 46 458 0.0 808
MS.gene049745.t1 MTR_2g084530 68.599 414 126 3 1 413 46 456 0.0 553
MS.gene049745.t1 MTR_4g084710 28.049 410 238 12 10 404 63 430 5.37e-37 140
MS.gene049745.t1 MTR_4g057600 26.241 423 256 11 1 409 110 490 1.30e-36 140
MS.gene049745.t1 MTR_5g097180 27.737 411 238 12 10 404 61 428 1.21e-35 136
MS.gene049745.t1 MTR_4g057570 26.667 420 256 10 1 406 104 485 7.91e-33 129
MS.gene049745.t1 MTR_2g095750 26.714 423 255 12 1 409 115 496 1.12e-32 129
MS.gene049745.t1 MTR_4g057595 25.359 418 260 9 1 406 112 489 2.24e-32 128
MS.gene049745.t1 MTR_4g057585 25.120 418 261 9 1 406 111 488 7.93e-32 126
MS.gene049745.t1 MTR_1g050545 26.442 416 255 11 1 404 98 474 1.49e-31 125
MS.gene049745.t1 MTR_1g094155 25.768 423 248 13 1 404 105 480 4.73e-30 121
MS.gene049745.t1 MTR_2g095730 25.882 425 259 12 1 409 109 493 1.62e-28 117
MS.gene049745.t1 MTR_1g020090 26.794 418 239 17 10 408 122 491 5.37e-26 110
MS.gene049745.t1 MTR_2g012850 24.541 436 273 16 1 413 64 466 1.19e-24 105
MS.gene049745.t1 MTR_1g021020 24.769 432 244 15 1 408 107 481 6.01e-24 103
MS.gene049745.t1 MTR_3g079590 26.066 422 254 16 1 408 107 484 7.79e-24 103
MS.gene049745.t1 MTR_8g099930 25.059 423 266 15 10 410 65 458 1.23e-23 102
MS.gene049745.t1 MTR_3g079620 25.581 430 254 15 1 408 107 492 1.60e-23 102
MS.gene049745.t1 MTR_4g089155 24.711 433 268 16 1 409 82 480 1.99e-23 102
MS.gene049745.t1 MTR_1g021010 23.934 422 261 14 1 408 105 480 5.98e-23 100
MS.gene049745.t1 MTR_3g079560 25.178 421 259 16 1 408 107 484 1.59e-22 99.8
MS.gene049745.t1 MTR_2g012860 26.168 428 266 16 1 408 70 467 3.34e-22 98.6
MS.gene049745.t1 MTR_2g095710 24.762 420 259 13 1 409 106 479 4.42e-22 98.6
MS.gene049745.t1 MTR_3g498755 24.828 435 259 14 4 409 45 440 9.33e-22 97.1
MS.gene049745.t1 MTR_3g079600 23.113 424 267 13 1 408 105 485 2.18e-21 96.3
MS.gene049745.t1 MTR_7g080180 21.362 426 270 13 20 397 74 482 2.54e-21 96.3
MS.gene049745.t1 MTR_8g011350 23.077 442 273 14 10 403 63 485 3.16e-21 95.9
MS.gene049745.t1 MTR_3g079570 25.057 435 241 16 1 408 108 484 3.84e-21 95.9
MS.gene049745.t1 MTR_4g075150 24.533 428 268 14 1 408 63 455 2.83e-20 92.8
MS.gene049745.t1 MTR_4g075150 24.356 427 272 14 1 408 63 457 4.51e-20 92.4
MS.gene049745.t1 MTR_1g040370 24.163 418 238 13 4 409 60 410 5.42e-20 91.7
MS.gene049745.t1 MTR_3g434850 24.344 419 275 14 4 409 60 449 1.17e-19 90.9
MS.gene049745.t1 MTR_7g021130 25.248 404 263 13 20 409 74 452 1.71e-19 90.5
MS.gene049745.t1 MTR_3g090130 23.866 419 273 14 10 409 60 451 1.82e-19 90.5
MS.gene049745.t1 MTR_4g122950 25.290 431 272 18 1 408 68 471 2.27e-19 90.5
MS.gene049745.t1 MTR_2g449850 25.829 422 267 16 10 413 70 463 3.36e-19 89.7
MS.gene049745.t1 MTR_3g034290 23.488 430 258 16 2 408 103 484 4.21e-19 89.7
MS.gene049745.t1 MTR_7g051430 22.272 449 281 15 10 409 62 491 1.79e-18 87.8
MS.gene049745.t1 MTR_8g011350 21.964 387 243 11 10 349 63 437 8.95e-18 85.5
MS.gene049745.t1 MTR_7g080180 20.856 374 245 10 20 349 74 440 1.73e-17 84.3
MS.gene049745.t1 MTR_3g090150 24.299 428 262 16 10 409 65 458 2.19e-17 84.3
MS.gene049745.t1 MTR_3g114620 47.170 106 19 2 77 182 19 87 3.18e-17 76.6
MS.gene049745.t1 MTR_7g013790 23.342 407 267 12 20 408 79 458 3.91e-17 83.6
MS.gene049745.t1 MTR_3g079630 24.048 420 273 14 1 408 107 492 1.04e-16 82.4
MS.gene049745.t1 MTR_0003s0560 21.463 410 274 11 11 408 108 481 5.16e-16 80.1
MS.gene049745.t1 MTR_2g062990 22.196 419 286 16 1 409 69 457 1.31e-15 79.0
MS.gene049745.t1 MTR_5g072570 31.333 150 95 3 10 151 61 210 1.84e-15 78.6
MS.gene049745.t1 MTR_0003s0560 24.528 212 136 6 2 192 102 310 2.04e-15 77.4
MS.gene049745.t1 MTR_2g081620 20.673 416 294 13 1 408 70 457 3.42e-15 77.4
MS.gene049745.t1 MTR_4g122960 24.242 429 277 17 1 408 68 469 8.52e-15 76.3
MS.gene049745.t1 MTR_2g062980 28.302 159 104 5 1 152 69 224 1.96e-14 75.1
MS.gene049745.t1 MTR_1g095560 30.597 134 85 3 1 128 62 193 4.28e-14 74.3
MS.gene049745.t1 MTR_1g095560 30.597 134 85 3 1 128 62 193 4.31e-14 73.9
MS.gene049745.t1 MTR_7g051430 31.410 156 91 5 10 151 62 215 7.84e-14 73.2
MS.gene049745.t1 MTR_1g095540 21.327 422 289 13 1 410 62 452 1.24e-13 72.8
MS.gene049745.t1 MTR_2g063000 29.078 141 89 4 1 133 68 205 1.84e-13 72.4
MS.gene049745.t1 MTR_3g034290 26.994 163 105 5 2 155 103 260 3.69e-13 70.9
MS.gene049745.t1 MTR_2g018600 22.870 446 258 18 10 412 66 468 1.04e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049745.t1 AT2G27920 64.407 413 145 1 1 411 47 459 0.0 548
MS.gene049745.t1 AT2G27920 62.240 384 143 1 30 411 4 387 3.14e-171 484
MS.gene049745.t1 AT2G27920 59.420 345 138 1 69 411 48 392 5.36e-144 416
MS.gene049745.t1 AT5G22980 27.423 423 250 11 1 409 113 492 8.35e-36 138
MS.gene049745.t1 AT3G45010 26.066 422 259 12 1 409 116 497 1.27e-35 137
MS.gene049745.t1 AT1G15000 27.139 409 238 10 10 404 55 417 6.47e-34 131
MS.gene049745.t1 AT3G10410 25.952 420 250 13 1 404 114 488 1.34e-28 117
MS.gene049745.t1 AT3G52010 27.536 414 235 17 20 410 109 480 1.94e-25 108
MS.gene049745.t1 AT4G15100 25.995 427 275 15 1 409 73 476 1.66e-23 102
MS.gene049745.t1 AT3G52000 25.917 409 244 15 20 410 108 475 2.50e-23 102
MS.gene049745.t1 AT4G12910 22.819 447 278 13 10 409 67 493 1.65e-21 97.1
MS.gene049745.t1 AT1G11080 23.585 424 289 13 1 408 79 483 4.47e-21 95.5
MS.gene049745.t1 AT1G11080 23.585 424 289 13 1 408 79 483 4.79e-21 95.5
MS.gene049745.t1 AT2G35780 23.944 426 267 14 1 408 59 445 1.84e-19 90.5
MS.gene049745.t1 AT4G30810 24.402 418 278 16 1 408 67 456 3.24e-19 89.7
MS.gene049745.t1 AT5G23210 25.708 424 285 12 1 408 80 489 5.79e-19 89.4
MS.gene049745.t1 AT3G07990 23.294 425 277 14 1 410 63 453 9.40e-19 88.6
MS.gene049745.t1 AT3G63470 22.410 415 281 12 2 408 110 491 1.53e-18 87.8
MS.gene049745.t1 AT3G25420 23.165 436 268 17 20 408 74 489 1.54e-18 87.8
MS.gene049745.t1 AT3G17180 23.005 426 288 16 1 409 68 470 3.23e-18 87.0
MS.gene049745.t1 AT5G42240 22.989 435 259 14 10 408 64 458 3.84e-18 86.7
MS.gene049745.t1 AT2G33530 23.373 415 279 14 10 408 65 456 9.56e-18 85.5
MS.gene049745.t1 AT1G28110 24.586 423 270 15 4 408 61 452 2.43e-17 84.0
MS.gene049745.t1 AT1G28110 24.586 423 270 15 4 408 61 452 2.43e-17 84.0
MS.gene049745.t1 AT1G61130 23.039 408 269 11 20 409 75 455 2.89e-17 84.0
MS.gene049745.t1 AT4G12910 22.656 384 242 11 10 349 67 439 3.62e-17 83.6
MS.gene049745.t1 AT1G43780 23.131 428 268 16 10 408 69 464 3.99e-17 83.6
MS.gene049745.t1 AT2G05850 22.912 419 257 15 16 410 104 480 5.13e-17 83.2
MS.gene049745.t1 AT3G52020 24.706 425 255 19 10 410 111 494 5.70e-17 83.2
MS.gene049745.t1 AT5G42230 32.667 150 93 3 10 151 60 209 1.01e-16 82.4
MS.gene049745.t1 AT5G42230 32.667 150 93 3 10 151 60 209 1.01e-16 82.4
MS.gene049745.t1 AT2G12480 23.358 411 257 13 10 409 63 426 1.76e-16 81.3
MS.gene049745.t1 AT2G12480 23.601 411 258 13 10 409 63 428 1.87e-16 81.3
MS.gene049745.t1 AT2G12480 23.058 412 258 13 10 409 63 427 2.14e-16 81.3
MS.gene049745.t1 AT5G23210 28.241 216 141 6 1 207 80 290 4.75e-16 80.1
MS.gene049745.t1 AT2G12480 23.844 411 281 13 10 409 63 452 5.21e-16 80.1
MS.gene049745.t1 AT3G17180 25.391 256 159 10 1 240 68 307 8.48e-16 79.3
MS.gene049745.t1 AT2G24010 33.582 134 79 3 1 128 59 188 4.70e-15 77.0
MS.gene049745.t1 AT5G08260 29.341 167 98 5 1 155 69 227 9.55e-15 76.3
MS.gene049745.t1 AT3G02110 30.935 139 90 2 20 152 81 219 1.71e-14 75.5
MS.gene049745.t1 AT2G24000 34.783 115 69 2 20 128 75 189 3.40e-14 74.7
MS.gene049745.t1 AT2G35770 22.951 427 269 16 1 408 67 452 7.42e-13 70.5
MS.gene049745.t1 AT4G30610 23.776 429 262 16 10 408 63 456 1.53e-12 69.3
MS.gene049745.t1 AT1G73290 30.534 131 76 3 1 121 61 186 4.66e-12 67.0
MS.gene049745.t1 AT1G73280 22.275 422 236 16 1 392 62 421 6.70e-12 67.4
MS.gene049745.t1 AT1G73290 30.534 131 76 3 1 121 61 186 9.98e-12 66.6
MS.gene049745.t1 AT1G73290 30.534 131 76 3 1 121 61 186 1.00e-11 66.6
MS.gene049745.t1 AT1G73300 31.298 131 75 3 1 121 62 187 1.07e-11 66.6
MS.gene049745.t1 AT1G73300 31.298 131 75 3 1 121 62 187 1.07e-11 66.6
MS.gene049745.t1 AT1G73280 23.985 271 172 8 1 245 62 324 1.36e-11 66.2
MS.gene049745.t1 AT5G36180 31.298 131 75 3 1 121 62 187 1.98e-11 65.9
MS.gene049745.t1 AT5G22960 29.167 120 70 1 20 139 63 167 4.09e-11 62.4
MS.gene049745.t1 AT1G73270 31.298 131 75 3 1 121 62 187 5.87e-11 64.3
MS.gene049745.t1 AT1G73270 31.298 131 75 3 1 121 62 187 5.98e-11 64.3

Find 93 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACAATTCTATTGGATTCT+TGG 0.200204 4.2:+46932068 MS.gene049745:CDS
CCCTGCAACCAGAGAATTAT+TGG 0.209686 4.2:-46928883 None:intergenic
CTTCTTACCTCATCAATTCT+TGG 0.221137 4.2:-46931182 None:intergenic
AAACTTGGCGCTTTACTAAA+TGG 0.231890 4.2:+46930959 MS.gene049745:CDS
GGCAAATTTGCTGTCACTCT+TGG 0.293076 4.2:+46929793 MS.gene049745:CDS
GCCAATAATTCTCTGGTTGC+AGG 0.294647 4.2:+46928882 MS.gene049745:CDS
CAAGAATCCAATAGAATTGT+AGG 0.295802 4.2:-46932067 None:intergenic
ATCATTGGATAGGGTGCTTC+AGG 0.322191 4.2:+46929123 MS.gene049745:intron
TTGCAGAAGCACACATGTTT+TGG 0.324024 4.2:+46928812 None:intergenic
TAGACTTACGTGACATTCTC+AGG 0.332673 4.2:-46931010 None:intergenic
AACTCAACATGGTTGTTAAA+AGG 0.339533 4.2:+46929204 MS.gene049745:CDS
AAGATAAGTGAAAACTTCAT+TGG 0.346770 4.2:-46931141 None:intergenic
TTACTTACCACAAAATCTTC+TGG 0.356577 4.2:-46930031 None:intergenic
TACATTGTGGCAGAGTCTTA+TGG 0.367175 4.2:+46929769 MS.gene049745:CDS
TCTTATGTAGGTGTGGCATT+AGG 0.374191 4.2:+46929992 MS.gene049745:intron
ATCTGAATTTGCAGTTATCA+TGG 0.379173 4.2:+46930235 MS.gene049745:intron
GGATAGGGTGCTTCAGGTGT+TGG 0.387749 4.2:+46929129 MS.gene049745:intron
AGAAGAAGACCTTGTCCTTA+GGG 0.396772 4.2:-46930921 None:intergenic
GATAGGGTGCTTCAGGTGTT+GGG 0.400100 4.2:+46929130 MS.gene049745:intron
GAGAAGAAGACCTTGTCCTT+AGG 0.404625 4.2:-46930922 None:intergenic
GAAGAATCTTCCACTCTGTA+TGG 0.410067 4.2:-46928850 None:intergenic
GTCTCAAGACTCGATGATAA+TGG 0.410949 4.2:+46930276 MS.gene049745:CDS
AACAACCATGTTGAGTTCCT+TGG 0.416739 4.2:-46929198 None:intergenic
AACCCAAGCTTCAGTCCCTT+TGG 0.424615 4.2:-46931628 None:intergenic
TACAATTTCTTGGTCGATGC+GGG 0.430582 4.2:+46930818 MS.gene049745:CDS
TTCTTGGTCGATGCGGGAAG+TGG 0.440552 4.2:+46930824 MS.gene049745:CDS
AAACTGTATCCTGTTCCAAC+TGG 0.449212 4.2:-46929634 None:intergenic
TTCTATTGGATTCTTGGAGC+TGG 0.449461 4.2:+46932074 MS.gene049745:CDS
GGTGCTTCAGGTGTTGGGAT+TGG 0.451236 4.2:+46929135 MS.gene049745:CDS
AAAAGGAGATCTCTTGTTTG+TGG 0.452395 4.2:+46929221 MS.gene049745:CDS
ATTATAGGTTGATCAGCTAC+TGG 0.456406 4.2:+46931303 MS.gene049745:intron
GAAACACAAGGTTGATCATT+GGG 0.459409 4.2:-46933774 None:intergenic
TCTTTATTCCGTAGGTGGGA+AGG 0.462971 4.2:+46931957 MS.gene049745:intron
AAGGGACTGAAGCTTGGGTT+AGG 0.462980 4.2:+46931631 MS.gene049745:CDS
TACCAAAGGGACTGAAGCTT+GGG 0.469620 4.2:+46931626 MS.gene049745:CDS
TGAAACACAAGGTTGATCAT+TGG 0.472820 4.2:-46933775 None:intergenic
TAGGACAATCCAGTTGGAAC+AGG 0.473654 4.2:+46929625 MS.gene049745:intron
CTACCAAAGGGACTGAAGCT+TGG 0.476951 4.2:+46931625 MS.gene049745:CDS
ATCTAATTTGTGCTACCAAA+GGG 0.486363 4.2:+46931613 MS.gene049745:CDS
CTTTATTCCGTAGGTGGGAA+GGG 0.493124 4.2:+46931958 MS.gene049745:intron
GATTAATAAAAGAAAGATCA+AGG 0.496246 4.2:+46930873 MS.gene049745:CDS
AAATTGAAACTTACACTTGG+AGG 0.498587 4.2:+46929847 MS.gene049745:CDS
TCTGAATTTGCAGTTATCAT+GGG 0.500652 4.2:+46930236 MS.gene049745:intron
AGGACAAGGTCTTCTTCTCC+TGG 0.502448 4.2:+46930926 MS.gene049745:CDS
AGCCATGGCCAATAATTCTC+TGG 0.505294 4.2:+46928875 MS.gene049745:CDS
TGAGTTCCTTGGCTTCAAGC+TGG 0.514690 4.2:-46929187 None:intergenic
ACTTCAGTAGTTCATGTAGC+TGG 0.515478 4.2:-46933828 None:intergenic
TAAAAGAAAGATCAAGGAAG+AGG 0.522688 4.2:+46930879 MS.gene049745:CDS
TTAATGATGCAACTGACTCA+TGG 0.525154 4.2:+46930471 MS.gene049745:CDS
GTTGATCAGCTACTGGCTAA+AGG 0.525996 4.2:+46931310 MS.gene049745:CDS
AACCAGAGAATTATTGGCCA+TGG 0.526681 4.2:-46928877 None:intergenic
TCCATTGTAGATAGTAACAT+TGG 0.536914 4.2:-46931335 None:intergenic
ATCAAGAAGCAACTTGAAGA+TGG 0.537399 4.2:+46930443 MS.gene049745:CDS
CCTGGTGGTGATGATAAACT+TGG 0.538460 4.2:+46930944 MS.gene049745:CDS
GATCTAATTTGTGCTACCAA+AGG 0.546200 4.2:+46931612 MS.gene049745:CDS
TGGATACCAGCTTGAAGCCA+AGG 0.548868 4.2:+46929181 MS.gene049745:CDS
TTTGTTACCACCACAGTAGA+GGG 0.555703 4.2:-46932012 None:intergenic
AAGACTCGATGATAATGGAC+TGG 0.560259 4.2:+46930281 MS.gene049745:CDS
CCGAGTATCTTACTTCCCTA+AGG 0.560786 4.2:+46930906 MS.gene049745:CDS
AAAGAGTCCTTTGTACATTG+TGG 0.565413 4.2:+46929756 MS.gene049745:CDS
GACATATCAGCAATGGCAGT+AGG 0.570461 4.2:+46930851 MS.gene049745:CDS
CCAATAATTCTCTGGTTGCA+GGG 0.571892 4.2:+46928883 MS.gene049745:CDS
CTTGAGACGTCTTTGAGTAG+AGG 0.578247 4.2:-46930261 None:intergenic
TATGAAGCCAAGAATTGATG+AGG 0.578416 4.2:+46931175 MS.gene049745:CDS
TATTTGATTATAGATGGGGA+GGG 0.582452 4.2:+46931114 MS.gene049745:intron
CCTTAGGGAAGTAAGATACT+CGG 0.588064 4.2:-46930906 None:intergenic
TGGAAGATTCTTCAAAGCCA+TGG 0.593562 4.2:+46928860 MS.gene049745:CDS
GGCTTCAAGCTGGTATCCAA+AGG 0.594499 4.2:-46929177 None:intergenic
ATTTGTTACCACCACAGTAG+AGG 0.594837 4.2:-46932013 None:intergenic
TTACAATTTCTTGGTCGATG+CGG 0.596051 4.2:+46930817 MS.gene049745:CDS
GTGTGGCATTAGGAGACAGT+TGG 0.599447 4.2:+46930002 MS.gene049745:CDS
GCCAATGTTACTATCTACAA+TGG 0.600614 4.2:+46931334 MS.gene049745:CDS
AGACTTACGTGACATTCTCA+GGG 0.602881 4.2:-46931009 None:intergenic
GTATTTGATTATAGATGGGG+AGG 0.603981 4.2:+46931113 MS.gene049745:intron
CTGAATTTGCAGTTATCATG+GGG 0.616384 4.2:+46930237 MS.gene049745:intron
ATAACATAGGACAATCCAGT+TGG 0.618495 4.2:+46929619 MS.gene049745:intron
GACTCTGCCACAATGTACAA+AGG 0.618531 4.2:-46929763 None:intergenic
TGAAGCCAAGGAACTCAACA+TGG 0.618532 4.2:+46929193 MS.gene049745:CDS
ATCTTACTTCCCTAAGGACA+AGG 0.618834 4.2:+46930912 MS.gene049745:CDS
TGGTTCAGACATATCAGCAA+TGG 0.623686 4.2:+46930844 MS.gene049745:CDS
CCAAGTTTATCATCACCACC+AGG 0.637624 4.2:-46930944 None:intergenic
CAACAATGTTGTCAAATCTG+TGG 0.659803 4.2:-46929701 None:intergenic
TGGAGATCAGTATTGCTCAG+AGG 0.661077 4.2:+46930420 MS.gene049745:intron
ACAAGGTCTTCTTCTCCTGG+TGG 0.673235 4.2:+46930929 MS.gene049745:CDS
GGTGGTAACAAATCGACCAA+AGG 0.673311 4.2:+46932023 MS.gene049745:CDS
GACAGAACACCCCTCTACTG+TGG 0.677504 4.2:+46932002 MS.gene049745:CDS
AGAACACCCCTCTACTGTGG+TGG 0.678028 4.2:+46932005 MS.gene049745:CDS
TTGTTACCACCACAGTAGAG+GGG 0.680201 4.2:-46932011 None:intergenic
ATCATTTGTAATGAAACACA+AGG 0.682028 4.2:-46933786 None:intergenic
TTCAACAAGCAGCAACAATG+TGG 0.683758 4.2:+46930514 MS.gene049745:CDS
ATAATTCTCTGGTTGCAGGG+TGG 0.685909 4.2:+46928886 MS.gene049745:CDS
TTATAAAAGTCCATACAGAG+TGG 0.699820 4.2:+46928840 MS.gene049745:CDS
ATTGTGGCAGAGTCTTATGG+TGG 0.700649 4.2:+46929772 MS.gene049745:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAGTTTAATACAAAA+GGG - chr4.2:46929927-46929946 None:intergenic 10.0%
!! TAAAAATAGTTTAATACAAA+AGG - chr4.2:46929928-46929947 None:intergenic 10.0%
!!! TATTTGAATTTTAGTTTTTA+AGG + chr4.2:46932287-46932306 MS.gene049745:intron 10.0%
!!! TTAATTTTAAATTACAGTTA+TGG + chr4.2:46930097-46930116 MS.gene049745:intron 10.0%
!!! TTATATATTTATAGTTGATA+TGG - chr4.2:46932215-46932234 None:intergenic 10.0%
!! ACTTATATGAATTAAATACA+AGG - chr4.2:46929329-46929348 None:intergenic 15.0%
!! ATTCAACAAAATAAACTTAT+TGG - chr4.2:46930070-46930089 None:intergenic 15.0%
!! CAATTATAGTAATATTTCAT+CGG + chr4.2:46931272-46931291 MS.gene049745:intron 15.0%
!! CTAGTTACTATTAATAAATT+TGG + chr4.2:46932350-46932369 MS.gene049745:intron 15.0%
!! TATTAATAAATTTGGAAATG+TGG + chr4.2:46932358-46932377 MS.gene049745:intron 15.0%
!!! AAGAAGATTTTTTTAAACTA+TGG + chr4.2:46931199-46931218 MS.gene049745:intron 15.0%
!!! AGATAAAATTCTCTTATTTT+TGG + chr4.2:46932648-46932667 MS.gene049745:intron 15.0%
!!! CTTAAATTTTTTGTTGAAAT+AGG + chr4.2:46930790-46930809 MS.gene049745:intron 15.0%
!!! GAATTTTCTCAAATTATTAA+TGG + chr4.2:46930703-46930722 MS.gene049745:intron 15.0%
!!! TAGTTCAATTAGTTTAATTA+CGG - chr4.2:46931844-46931863 None:intergenic 15.0%
!!! TTAAAGAAAAAGTATGATTT+TGG + chr4.2:46929960-46929979 MS.gene049745:intron 15.0%
!!! TTTTAGATATAAAAATCAGA+AGG + chr4.2:46933237-46933256 MS.gene049745:intron 15.0%
!! AAAAAATTGAAACTTACACT+TGG + chr4.2:46929844-46929863 MS.gene049745:CDS 20.0%
!! AAAGCCAATGTTATAAAAAT+CGG + chr4.2:46931714-46931733 MS.gene049745:intron 20.0%
!! AAAGTGTGTTTGATTATTAT+AGG + chr4.2:46931587-46931606 MS.gene049745:intron 20.0%
!! AAGCAAAAAAACAATATTGT+AGG + chr4.2:46933552-46933571 MS.gene049745:intron 20.0%
!! AGTTTAATTACGGTTTAATT+TGG - chr4.2:46931834-46931853 None:intergenic 20.0%
!! ATAAGCAAAAATCAACAATT+TGG - chr4.2:46933638-46933657 None:intergenic 20.0%
!! GAAAATAATGCAAGAAAAAA+GGG + chr4.2:46933264-46933283 MS.gene049745:intron 20.0%
!! GAAAATGAATAAGATACTAT+TGG + chr4.2:46931406-46931425 MS.gene049745:intron 20.0%
!! GATTAATAAAAGAAAGATCA+AGG + chr4.2:46930873-46930892 MS.gene049745:CDS 20.0%
!! TATTAATGGTGTTTAAGTAT+CGG + chr4.2:46930717-46930736 MS.gene049745:intron 20.0%
!! TCAAACAATAAATTTCCAAA+TGG + chr4.2:46932469-46932488 MS.gene049745:intron 20.0%
!! TCTTTAGTAAGAAGAAAAAA+AGG + chr4.2:46933437-46933456 MS.gene049745:intron 20.0%
!! TGAAAATAATGCAAGAAAAA+AGG + chr4.2:46933263-46933282 MS.gene049745:intron 20.0%
!! TTAGTTTCGATAATAATAAG+AGG + chr4.2:46931384-46931403 MS.gene049745:intron 20.0%
!!! ATAGGATTTTTACAATTTCT+TGG + chr4.2:46930808-46930827 MS.gene049745:intron 20.0%
!!! ATATTTTCATATCATTGGAT+AGG + chr4.2:46929113-46929132 MS.gene049745:intron 20.0%
!!! ATGAGATATTTTCATATCAT+TGG + chr4.2:46929108-46929127 MS.gene049745:intron 20.0%
!!! ATTCTTATCTTCTTTTTTCA+CGG + chr4.2:46932256-46932275 MS.gene049745:intron 20.0%
!!! GTAGTACTATAATTTTAATG+TGG - chr4.2:46932701-46932720 None:intergenic 20.0%
!!! GTATTTTCTTCAAAATACTT+AGG + chr4.2:46932762-46932781 MS.gene049745:intron 20.0%
!!! TATTTTCATATCATTGGATA+GGG + chr4.2:46929114-46929133 MS.gene049745:intron 20.0%
!!! TCATCGGAATTTTTTATTAT+AGG + chr4.2:46931288-46931307 MS.gene049745:intron 20.0%
!!! TGAAAGAGTAAAACTTTTTA+TGG + chr4.2:46929522-46929541 MS.gene049745:intron 20.0%
!!! TTTCATTTTGTTATCTCATA+AGG + chr4.2:46933698-46933717 MS.gene049745:intron 20.0%
!!! TTTTTGCTTATAATAGTGAT+CGG - chr4.2:46933541-46933560 None:intergenic 20.0%
! AAAATTTCTACTTGAGAAGA+TGG - chr4.2:46930333-46930352 None:intergenic 25.0%
! AAATTTCTACTTGAGAAGAT+GGG - chr4.2:46930332-46930351 None:intergenic 25.0%
! AAGATAAGTGAAAACTTCAT+TGG - chr4.2:46931144-46931163 None:intergenic 25.0%
! ACAAAAACCTACAATTCTAT+TGG + chr4.2:46932060-46932079 MS.gene049745:CDS 25.0%
! ACAAAAGAGAACTCATTTAT+GGG - chr4.2:46930565-46930584 None:intergenic 25.0%
! ACCTTTATATTGTGGTAAAA+TGG + chr4.2:46930131-46930150 MS.gene049745:intron 25.0%
! ACTGTGTATTTGATTATAGA+TGG + chr4.2:46931108-46931127 MS.gene049745:intron 25.0%
! ATCATTTGTAATGAAACACA+AGG - chr4.2:46933789-46933808 None:intergenic 25.0%
! ATCTATGTAATCATGTATGT+TGG + chr4.2:46929004-46929023 MS.gene049745:intron 25.0%
! ATTCACATTCAGATCTAAAT+GGG + chr4.2:46933340-46933359 MS.gene049745:intron 25.0%
! CATTCAATAAAAGATGTATG+TGG + chr4.2:46933015-46933034 MS.gene049745:intron 25.0%
! CATTCATTTAATGATGTATG+TGG + chr4.2:46933577-46933596 MS.gene049745:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr4.2:46933596-46933577 None:intergenic 25.0%
! CTGTGTATTTGATTATAGAT+GGG + chr4.2:46931109-46931128 MS.gene049745:intron 25.0%
! GTAATCTCAAATATTGATGT+CGG + chr4.2:46933151-46933170 MS.gene049745:intron 25.0%
! TACAAAAGAGAACTCATTTA+TGG - chr4.2:46930566-46930585 None:intergenic 25.0%
! TGGACTTAATATATACATTG+CGG - chr4.2:46930594-46930613 None:intergenic 25.0%
! TGTGTATTTGATTATAGATG+GGG + chr4.2:46931110-46931129 MS.gene049745:intron 25.0%
! TTATACACAAACACAGAAAA+TGG - chr4.2:46929089-46929108 None:intergenic 25.0%
! TTGATGTCATATGATAACAT+AGG + chr4.2:46929606-46929625 MS.gene049745:intron 25.0%
!! AACTTTTCATTCATGGTTAA+AGG - chr4.2:46931041-46931060 None:intergenic 25.0%
!! ATCAAATACTTTTAGTGATC+TGG - chr4.2:46929395-46929414 None:intergenic 25.0%
!! TCCATTTTACCACAATATAA+AGG - chr4.2:46930135-46930154 None:intergenic 25.0%
!! TGAACAAAACTTTTCATTCA+TGG - chr4.2:46931048-46931067 None:intergenic 25.0%
!! TGATCCGATTTTTATAACAT+TGG - chr4.2:46931721-46931740 None:intergenic 25.0%
!! TTTATCTAACAAACCCATTT+TGG + chr4.2:46930400-46930419 MS.gene049745:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr4.2:46933088-46933107 MS.gene049745:intron 25.0%
!!! AAATCTTCTTTTTGACTATG+TGG + chr4.2:46929564-46929583 MS.gene049745:intron 25.0%
!!! ATAGTTGTTTTAGTGATGAT+TGG - chr4.2:46932118-46932137 None:intergenic 25.0%
!!! CTTTAATGTTTTTTTTCCGA+AGG - chr4.2:46931571-46931590 None:intergenic 25.0%
!!! TGGTAAACTTTTTCTTATGT+AGG + chr4.2:46929980-46929999 MS.gene049745:intron 25.0%
!!! TTTTTATAACATTGGCTTTG+AGG - chr4.2:46931713-46931732 None:intergenic 25.0%
AAAATTCTATGTGAGCAAGA+AGG + chr4.2:46932514-46932533 MS.gene049745:intron 30.0%
AAATTCTATGTGAGCAAGAA+GGG + chr4.2:46932515-46932534 MS.gene049745:intron 30.0%
AAATTGAAACTTACACTTGG+AGG + chr4.2:46929847-46929866 MS.gene049745:CDS 30.0%
AACATTATGGATTTATGGTC+AGG + chr4.2:46933399-46933418 MS.gene049745:intron 30.0%
AACTCAACATGGTTGTTAAA+AGG + chr4.2:46929204-46929223 MS.gene049745:CDS 30.0%
ACTTTAGATCAAAGTGTATC+TGG + chr4.2:46930634-46930653 MS.gene049745:intron 30.0%
ATCTGAATTTGCAGTTATCA+TGG + chr4.2:46930235-46930254 MS.gene049745:intron 30.0%
ATCTTCTTTCTTTATTCCGT+AGG + chr4.2:46931949-46931968 MS.gene049745:intron 30.0%
CAAGAATCCAATAGAATTGT+AGG - chr4.2:46932070-46932089 None:intergenic 30.0%
CATATAAGTTGTGAGTGTAA+AGG + chr4.2:46929340-46929359 MS.gene049745:intron 30.0%
CATTCACATTCAGATCTAAA+TGG + chr4.2:46933339-46933358 MS.gene049745:intron 30.0%
CATTTAGATCTGAATGTGAA+TGG - chr4.2:46933341-46933360 None:intergenic 30.0%
CTACAATTCTATTGGATTCT+TGG + chr4.2:46932068-46932087 MS.gene049745:CDS 30.0%
GACAAAAAAGATCTTCCATT+TGG - chr4.2:46932487-46932506 None:intergenic 30.0%
GAGGAAACATTATGGATTTA+TGG + chr4.2:46933394-46933413 MS.gene049745:intron 30.0%
GTAGTTAAGCAATCATTTCA+AGG - chr4.2:46931090-46931109 None:intergenic 30.0%
GTATGACTTGAAAAATCCTT+TGG - chr4.2:46932042-46932061 None:intergenic 30.0%
TAAAAGAAAGATCAAGGAAG+AGG + chr4.2:46930879-46930898 MS.gene049745:CDS 30.0%
TATTTGATTATAGATGGGGA+GGG + chr4.2:46931114-46931133 MS.gene049745:intron 30.0%
TCCATTGTAGATAGTAACAT+TGG - chr4.2:46931338-46931357 None:intergenic 30.0%
TCTGAATTTGCAGTTATCAT+GGG + chr4.2:46930236-46930255 MS.gene049745:intron 30.0%
TTACTAAAGAGACAGTAACT+AGG - chr4.2:46933427-46933446 None:intergenic 30.0%
TTACTTACCACAAAATCTTC+TGG - chr4.2:46930034-46930053 None:intergenic 30.0%
TTATAAAAGTCCATACAGAG+TGG + chr4.2:46928840-46928859 MS.gene049745:CDS 30.0%
! AAAATTTTATCTACTCCCTC+AGG - chr4.2:46933110-46933129 None:intergenic 30.0%
! ACATTGAGTTTTTGTGACAT+TGG + chr4.2:46932787-46932806 MS.gene049745:intron 30.0%
! ATCTAATTTGTGCTACCAAA+GGG + chr4.2:46931613-46931632 MS.gene049745:CDS 30.0%
! CATTAAAGTGTGTTTTCCTT+CGG + chr4.2:46931552-46931571 MS.gene049745:intron 30.0%
! CTTTTAACAGCTCATTCATA+TGG + chr4.2:46932443-46932462 MS.gene049745:intron 30.0%
! CTTTTGCTTATAATAGTGAC+CGG - chr4.2:46932980-46932999 None:intergenic 30.0%
! GAAGTTTTCACTTATCTTGA+AGG + chr4.2:46931146-46931165 MS.gene049745:CDS 30.0%
! TGTTCTTTTCTGTGTTAGTT+AGG + chr4.2:46929891-46929910 MS.gene049745:intron 30.0%
!! AACTTTTTCTTATGTAGGTG+TGG + chr4.2:46929985-46930004 MS.gene049745:intron 30.0%
!! ATTGGAAATTTTGAAGAGGT+TGG + chr4.2:46929153-46929172 MS.gene049745:CDS 30.0%
!!! AAAAGCACTTTTCATGATGA+TGG - chr4.2:46929270-46929289 None:intergenic 30.0%
AAAAATCGGATCAGACTAGT+CGG + chr4.2:46931728-46931747 MS.gene049745:intron 35.0%
AAACTTGGCGCTTTACTAAA+TGG + chr4.2:46930959-46930978 MS.gene049745:CDS 35.0%
AAAGAGTCCTTTGTACATTG+TGG + chr4.2:46929756-46929775 MS.gene049745:CDS 35.0%
AAATGTGGAAGATCTTTAGG+GGG + chr4.2:46932373-46932392 MS.gene049745:intron 35.0%
AAGGGCTAAAAAGTTTCTTG+GGG + chr4.2:46931976-46931995 MS.gene049745:CDS 35.0%
AATGGATAGTAAAGCTCTTC+AGG - chr4.2:46929071-46929090 None:intergenic 35.0%
AGCAATACTGATCTCCAAAA+TGG - chr4.2:46930417-46930436 None:intergenic 35.0%
ATAACATAGGACAATCCAGT+TGG + chr4.2:46929619-46929638 MS.gene049745:intron 35.0%
ATCAAGAAGCAACTTGAAGA+TGG + chr4.2:46930443-46930462 MS.gene049745:CDS 35.0%
ATCCATAATGTTTCCTCACA+AGG - chr4.2:46933391-46933410 None:intergenic 35.0%
ATTCTGACGATTACGATTGA+CGG - chr4.2:46929467-46929486 None:intergenic 35.0%
ATTTCTGTGTTGTGTTGTGT+CGG - chr4.2:46930663-46930682 None:intergenic 35.0%
CAAAAGCAAGGGTTGTATTT+GGG - chr4.2:46932935-46932954 None:intergenic 35.0%
CAACAATGTTGTCAAATCTG+TGG - chr4.2:46929704-46929723 None:intergenic 35.0%
CTGAATTTGCAGTTATCATG+GGG + chr4.2:46930237-46930256 MS.gene049745:intron 35.0%
CTGTAATTGTAGTTGCAATG+CGG + chr4.2:46930166-46930185 MS.gene049745:intron 35.0%
CTGTATCTCTTCAAAAGCAA+GGG - chr4.2:46932946-46932965 None:intergenic 35.0%
CTGTGTTAGTTAGGAAATGA+TGG + chr4.2:46929900-46929919 MS.gene049745:intron 35.0%
CTTCTTACCTCATCAATTCT+TGG - chr4.2:46931185-46931204 None:intergenic 35.0%
GAAATGTGGAAGATCTTTAG+GGG + chr4.2:46932372-46932391 MS.gene049745:intron 35.0%
GAAGGGCTAAAAAGTTTCTT+GGG + chr4.2:46931975-46931994 MS.gene049745:CDS 35.0%
GCAATACTGATCTCCAAAAT+GGG - chr4.2:46930416-46930435 None:intergenic 35.0%
GCCAATGTTACTATCTACAA+TGG + chr4.2:46931334-46931353 MS.gene049745:CDS 35.0%
GGAAATGTGGAAGATCTTTA+GGG + chr4.2:46932371-46932390 MS.gene049745:intron 35.0%
GTATTTGATTATAGATGGGG+AGG + chr4.2:46931113-46931132 MS.gene049745:intron 35.0%
GTCTAGACATTTCTGTTTGA+AGG - chr4.2:46933189-46933208 None:intergenic 35.0%
TACCTTGTGAGGAAACATTA+TGG + chr4.2:46933386-46933405 MS.gene049745:intron 35.0%
TATGAAGCCAAGAATTGATG+AGG + chr4.2:46931175-46931194 MS.gene049745:CDS 35.0%
TCAAAAGCAAGGGTTGTATT+TGG - chr4.2:46932936-46932955 None:intergenic 35.0%
TCTGTATCTCTTCAAAAGCA+AGG - chr4.2:46932947-46932966 None:intergenic 35.0%
TCTTTCTTTATTCCGTAGGT+GGG + chr4.2:46931953-46931972 MS.gene049745:intron 35.0%
TGCTGCAAACCTTTATATTG+TGG + chr4.2:46930123-46930142 MS.gene049745:intron 35.0%
TGCTTATAATAGTGACCTGA+GGG + chr4.2:46933092-46933111 MS.gene049745:intron 35.0%
TGCTTATAATAGTGATCGGA+GGG - chr4.2:46933537-46933556 None:intergenic 35.0%
TGGAAATGTGGAAGATCTTT+AGG + chr4.2:46932370-46932389 MS.gene049745:intron 35.0%
TTACAATTTCTTGGTCGATG+CGG + chr4.2:46930817-46930836 MS.gene049745:CDS 35.0%
TTAGATCTGAATGTGAATGG+TGG - chr4.2:46933338-46933357 None:intergenic 35.0%
TTCTTTCTTTATTCCGTAGG+TGG + chr4.2:46931952-46931971 MS.gene049745:intron 35.0%
TTGCTTATAATAGTGACCTG+AGG + chr4.2:46933091-46933110 MS.gene049745:intron 35.0%
TTGCTTATAATAGTGATCGG+AGG - chr4.2:46933538-46933557 None:intergenic 35.0%
! AAAAGGAGATCTCTTGTTTG+TGG + chr4.2:46929221-46929240 MS.gene049745:CDS 35.0%
! GAAACACAAGGTTGATCATT+GGG - chr4.2:46933777-46933796 None:intergenic 35.0%
! GATCTAATTTGTGCTACCAA+AGG + chr4.2:46931612-46931631 MS.gene049745:CDS 35.0%
! GATCTCTTGTTTGTGGTAAT+TGG + chr4.2:46929228-46929247 MS.gene049745:intron 35.0%
! TACACTTTGATCTAAAGTGC+TGG - chr4.2:46930632-46930651 None:intergenic 35.0%
! TACTATTGGACATGTTGACT+TGG + chr4.2:46931420-46931439 MS.gene049745:intron 35.0%
! TGAAACACAAGGTTGATCAT+TGG - chr4.2:46933778-46933797 None:intergenic 35.0%
! TTAATGATGCAACTGACTCA+TGG + chr4.2:46930471-46930490 MS.gene049745:CDS 35.0%
!! ACCAATCAAAGAGTACTTAC+AGG - chr4.2:46928913-46928932 None:intergenic 35.0%
!! ATGGACTGGAAAAATCAAAC+AGG + chr4.2:46930295-46930314 MS.gene049745:CDS 35.0%
!! ATTATAGGTTGATCAGCTAC+TGG + chr4.2:46931303-46931322 MS.gene049745:intron 35.0%
!! CATTGATTCGATATTCGATC+CGG + chr4.2:46931883-46931902 MS.gene049745:intron 35.0%
!! CCAATCAAAGAGTACTTACA+GGG - chr4.2:46928912-46928931 None:intergenic 35.0%
!! TGGGATTGGAAATTTTGAAG+AGG + chr4.2:46929149-46929168 MS.gene049745:CDS 35.0%
AAACTGTATCCTGTTCCAAC+TGG - chr4.2:46929637-46929656 None:intergenic 40.0%
AACAACCATGTTGAGTTCCT+TGG - chr4.2:46929201-46929220 None:intergenic 40.0%
AACCAGAGAATTATTGGCCA+TGG - chr4.2:46928880-46928899 None:intergenic 40.0%
ACCTTCATTTGCGCTTAATG+AGG + chr4.2:46932401-46932420 MS.gene049745:intron 40.0%
AGAAGAAGACCTTGTCCTTA+GGG - chr4.2:46930924-46930943 None:intergenic 40.0%
AGACTTACGTGACATTCTCA+GGG - chr4.2:46931012-46931031 None:intergenic 40.0%
ATCTTACTTCCCTAAGGACA+AGG + chr4.2:46930912-46930931 MS.gene049745:CDS 40.0%
CCAATAATTCTCTGGTTGCA+GGG + chr4.2:46928883-46928902 MS.gene049745:CDS 40.0%
CCCTGTAAGTACTCTTTGAT+TGG + chr4.2:46928909-46928928 MS.gene049745:intron 40.0%
CCTTAGGGAAGTAAGATACT+CGG - chr4.2:46930909-46930928 None:intergenic 40.0%
CGCTTAATGAGGATCATCTT+AGG + chr4.2:46932412-46932431 MS.gene049745:intron 40.0%
GAAGAATCTTCCACTCTGTA+TGG - chr4.2:46928853-46928872 None:intergenic 40.0%
GGAAGGGCTAAAAAGTTTCT+TGG + chr4.2:46931974-46931993 MS.gene049745:CDS 40.0%
GTAGTGTTTACCGTTGAGTT+TGG + chr4.2:46932727-46932746 MS.gene049745:intron 40.0%
GTCTCAAGACTCGATGATAA+TGG + chr4.2:46930276-46930295 MS.gene049745:CDS 40.0%
TACAATTTCTTGGTCGATGC+GGG + chr4.2:46930818-46930837 MS.gene049745:CDS 40.0%
TACATTGTGGCAGAGTCTTA+TGG + chr4.2:46929769-46929788 MS.gene049745:CDS 40.0%
TAGACTTACGTGACATTCTC+AGG - chr4.2:46931013-46931032 None:intergenic 40.0%
TCCTCATTAAGCGCAAATGA+AGG - chr4.2:46932405-46932424 None:intergenic 40.0%
TCTTATGTAGGTGTGGCATT+AGG + chr4.2:46929992-46930011 MS.gene049745:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4.2:46933651-46933670 MS.gene049745:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4.2:46933670-46933651 None:intergenic 40.0%
TGGAAGATTCTTCAAAGCCA+TGG + chr4.2:46928860-46928879 MS.gene049745:CDS 40.0%
TGGTTCAGACATATCAGCAA+TGG + chr4.2:46930844-46930863 MS.gene049745:CDS 40.0%
TTATCCATGTCGACATGTGT+CGG - chr4.2:46928965-46928984 None:intergenic 40.0%
TTCAACAAGCAGCAACAATG+TGG + chr4.2:46930514-46930533 MS.gene049745:CDS 40.0%
TTCCTCACAAGGTAAACACA+CGG - chr4.2:46933380-46933399 None:intergenic 40.0%
TTCTATTGGATTCTTGGAGC+TGG + chr4.2:46932074-46932093 MS.gene049745:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4.2:46933650-46933669 MS.gene049745:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4.2:46933669-46933650 None:intergenic 40.0%
TTTGTTACCACCACAGTAGA+GGG - chr4.2:46932015-46932034 None:intergenic 40.0%
! AATGTGGAAGATCTTTAGGG+GGG + chr4.2:46932374-46932393 MS.gene049745:intron 40.0%
! ATTTGTTACCACCACAGTAG+AGG - chr4.2:46932016-46932035 None:intergenic 40.0%
! ATTTGTTTGCTTGCTGCTGT+AGG + chr4.2:46933749-46933768 MS.gene049745:intron 40.0%
! GATCTCACCAGAAGATTTTG+TGG + chr4.2:46930024-46930043 MS.gene049745:CDS 40.0%
! TGGAACAGGATACAGTTTTG+TGG + chr4.2:46929639-46929658 MS.gene049745:CDS 40.0%
! TTTCTGTTTGAAGGCGTGTT+CGG - chr4.2:46933180-46933199 None:intergenic 40.0%
!! AACAGGATACAGTTTTGTGG+AGG + chr4.2:46929642-46929661 MS.gene049745:CDS 40.0%
!! AAGACTCGATGATAATGGAC+TGG + chr4.2:46930281-46930300 MS.gene049745:CDS 40.0%
!! CCAATGTTGACTTGTCTATC+CGG - chr4.2:46931905-46931924 None:intergenic 40.0%
!! TTTGATCTAAAGTGCTGGTG+CGG - chr4.2:46930627-46930646 None:intergenic 40.0%
!! TTTTGAAGAGGTTGGACCTT+TGG + chr4.2:46929161-46929180 MS.gene049745:CDS 40.0%
AAGCAAGGGTTGTATTTGGG+TGG - chr4.2:46932932-46932951 None:intergenic 45.0%
AGATACAGACATACTCCCTC+CGG + chr4.2:46932958-46932977 MS.gene049745:intron 45.0%
AGCCATGGCCAATAATTCTC+TGG + chr4.2:46928875-46928894 MS.gene049745:CDS 45.0%
ATAATTCTCTGGTTGCAGGG+TGG + chr4.2:46928886-46928905 MS.gene049745:CDS 45.0%
ATATCCATGTCTGTGCGTCA+AGG + chr4.2:46930751-46930770 MS.gene049745:intron 45.0%
ATTGCTCACGCCAAACTCAA+CGG - chr4.2:46932740-46932759 None:intergenic 45.0%
CAGAAGAAAGATACACCCTC+CGG - chr4.2:46933669-46933688 None:intergenic 45.0%
CCAAGTTTATCATCACCACC+AGG - chr4.2:46930947-46930966 None:intergenic 45.0%
CCCTGCAACCAGAGAATTAT+TGG - chr4.2:46928886-46928905 None:intergenic 45.0%
CCGAGTATCTTACTTCCCTA+AGG + chr4.2:46930906-46930925 MS.gene049745:CDS 45.0%
CCGGATAGACAAGTCAACAT+TGG + chr4.2:46931902-46931921 MS.gene049745:intron 45.0%
CGCACTAGAGACACTAGTTA+AGG + chr4.2:46931246-46931265 MS.gene049745:intron 45.0%
CTTGAGACGTCTTTGAGTAG+AGG - chr4.2:46930264-46930283 None:intergenic 45.0%
CTTTATTCCGTAGGTGGGAA+GGG + chr4.2:46931958-46931977 MS.gene049745:intron 45.0%
GACATATCAGCAATGGCAGT+AGG + chr4.2:46930851-46930870 MS.gene049745:CDS 45.0%
GACTCTGCCACAATGTACAA+AGG - chr4.2:46929766-46929785 None:intergenic 45.0%
GAGAAGAAGACCTTGTCCTT+AGG - chr4.2:46930925-46930944 None:intergenic 45.0%
GCCAATAATTCTCTGGTTGC+AGG + chr4.2:46928882-46928901 MS.gene049745:CDS 45.0%
GGTGGTAACAAATCGACCAA+AGG + chr4.2:46932023-46932042 MS.gene049745:CDS 45.0%
TACCAAAGGGACTGAAGCTT+GGG + chr4.2:46931626-46931645 MS.gene049745:CDS 45.0%
TAGGACAATCCAGTTGGAAC+AGG + chr4.2:46929625-46929644 MS.gene049745:intron 45.0%
TCTATGTGAGCAAGAAGGGT+CGG + chr4.2:46932519-46932538 MS.gene049745:intron 45.0%
TCTTTATTCCGTAGGTGGGA+AGG + chr4.2:46931957-46931976 MS.gene049745:intron 45.0%
TGAAGCCAAGGAACTCAACA+TGG + chr4.2:46929193-46929212 MS.gene049745:CDS 45.0%
TGGAGATCAGTATTGCTCAG+AGG + chr4.2:46930420-46930439 MS.gene049745:intron 45.0%
TTGTTACCACCACAGTAGAG+GGG - chr4.2:46932014-46932033 None:intergenic 45.0%
! ATCATTGGATAGGGTGCTTC+AGG + chr4.2:46929123-46929142 MS.gene049745:intron 45.0%
! ATTGTGGCAGAGTCTTATGG+TGG + chr4.2:46929772-46929791 MS.gene049745:CDS 45.0%
! CCTGGTGGTGATGATAAACT+TGG + chr4.2:46930944-46930963 MS.gene049745:CDS 45.0%
! GACATGTGTCGGTACTTCAA+AGG - chr4.2:46928954-46928973 None:intergenic 45.0%
! GTTGATCAGCTACTGGCTAA+AGG + chr4.2:46931310-46931329 MS.gene049745:CDS 45.0%
! TCTTCAGGTTAGATGTGTCC+CGG - chr4.2:46929056-46929075 None:intergenic 45.0%
!! GGCAAATTTGCTGTCACTCT+TGG + chr4.2:46929793-46929812 MS.gene049745:CDS 45.0%
!! TTTTTAGCCCTTCCCACCTA+CGG - chr4.2:46931968-46931987 None:intergenic 45.0%
AACCCAAGCTTCAGTCCCTT+TGG - chr4.2:46931631-46931650 None:intergenic 50.0%
AAGGGACTGAAGCTTGGGTT+AGG + chr4.2:46931631-46931650 MS.gene049745:CDS 50.0%
AAGGGTCGGTCTAACACAAG+GGG + chr4.2:46932533-46932552 MS.gene049745:intron 50.0%
ACAAGGTCTTCTTCTCCTGG+TGG + chr4.2:46930929-46930948 MS.gene049745:CDS 50.0%
ACCGATGTGTATCAGACACC+GGG + chr4.2:46929035-46929054 MS.gene049745:intron 50.0%
AGAAGGGTCGGTCTAACACA+AGG + chr4.2:46932531-46932550 MS.gene049745:intron 50.0%
AGGACAAGGTCTTCTTCTCC+TGG + chr4.2:46930926-46930945 MS.gene049745:CDS 50.0%
CAAGGTAAACACACGGTCAC+TGG - chr4.2:46933373-46933392 None:intergenic 50.0%
CACCGATGTGTATCAGACAC+CGG + chr4.2:46929034-46929053 MS.gene049745:intron 50.0%
CTACCAAAGGGACTGAAGCT+TGG + chr4.2:46931625-46931644 MS.gene049745:CDS 50.0%
GAAGGGTCGGTCTAACACAA+GGG + chr4.2:46932532-46932551 MS.gene049745:intron 50.0%
GACCGTGTGTTTACCTTGTG+AGG + chr4.2:46933375-46933394 MS.gene049745:intron 50.0%
GGCTTCAAGCTGGTATCCAA+AGG - chr4.2:46929180-46929199 None:intergenic 50.0%
GTGTGGCATTAGGAGACAGT+TGG + chr4.2:46930002-46930021 MS.gene049745:CDS 50.0%
GTTGCAATGCGGTTTGTCGA+CGG + chr4.2:46930177-46930196 MS.gene049745:intron 50.0%
TCCCGGTGTCTGATACACAT+CGG - chr4.2:46929039-46929058 None:intergenic 50.0%
TGAGTTCCTTGGCTTCAAGC+TGG - chr4.2:46929190-46929209 None:intergenic 50.0%
TGGATACCAGCTTGAAGCCA+AGG + chr4.2:46929181-46929200 MS.gene049745:CDS 50.0%
! GATAGGGTGCTTCAGGTGTT+GGG + chr4.2:46929130-46929149 MS.gene049745:intron 50.0%
!! AGTACCGACACATGTCGACA+TGG + chr4.2:46928958-46928977 MS.gene049745:intron 50.0%
AGAACACCCCTCTACTGTGG+TGG + chr4.2:46932005-46932024 MS.gene049745:CDS 55.0%
GACAGAACACCCCTCTACTG+TGG + chr4.2:46932002-46932021 MS.gene049745:CDS 55.0%
TTCTTGGTCGATGCGGGAAG+TGG + chr4.2:46930824-46930843 MS.gene049745:CDS 55.0%
! GGATAGGGTGCTTCAGGTGT+TGG + chr4.2:46929129-46929148 MS.gene049745:intron 55.0%
! GTAGCCTTGACGCACAGACA+TGG - chr4.2:46930758-46930777 None:intergenic 55.0%
!! GGTGCTTCAGGTGTTGGGAT+TGG + chr4.2:46929135-46929154 MS.gene049745:CDS 55.0%
GCTGGTGCGGAGCAATAGCA+TGG - chr4.2:46930614-46930633 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 46928826 46933839 46928826 ID=MS.gene049745
chr4.2 mRNA 46928826 46933839 46928826 ID=MS.gene049745.t1;Parent=MS.gene049745
chr4.2 exon 46928826 46928912 46928826 ID=MS.gene049745.t1.exon1;Parent=MS.gene049745.t1
chr4.2 CDS 46928826 46928912 46928826 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46929135 46929242 46929135 ID=MS.gene049745.t1.exon2;Parent=MS.gene049745.t1
chr4.2 CDS 46929135 46929242 46929135 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46929628 46929868 46929628 ID=MS.gene049745.t1.exon3;Parent=MS.gene049745.t1
chr4.2 CDS 46929628 46929868 46929628 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46930002 46930045 46930002 ID=MS.gene049745.t1.exon4;Parent=MS.gene049745.t1
chr4.2 CDS 46930002 46930045 46930002 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46930249 46930316 46930249 ID=MS.gene049745.t1.exon5;Parent=MS.gene049745.t1
chr4.2 CDS 46930249 46930316 46930249 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46930430 46930535 46930430 ID=MS.gene049745.t1.exon6;Parent=MS.gene049745.t1
chr4.2 CDS 46930430 46930535 46930430 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46930812 46931023 46930812 ID=MS.gene049745.t1.exon7;Parent=MS.gene049745.t1
chr4.2 CDS 46930812 46931023 46930812 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46931127 46931196 46931127 ID=MS.gene049745.t1.exon8;Parent=MS.gene049745.t1
chr4.2 CDS 46931127 46931196 46931127 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46931310 46931360 46931310 ID=MS.gene049745.t1.exon9;Parent=MS.gene049745.t1
chr4.2 CDS 46931310 46931360 46931310 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46931609 46931661 46931609 ID=MS.gene049745.t1.exon10;Parent=MS.gene049745.t1
chr4.2 CDS 46931609 46931661 46931609 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46931971 46932103 46931971 ID=MS.gene049745.t1.exon11;Parent=MS.gene049745.t1
chr4.2 CDS 46931971 46932103 46931971 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
chr4.2 exon 46933771 46933839 46933771 ID=MS.gene049745.t1.exon12;Parent=MS.gene049745.t1
chr4.2 CDS 46933771 46933839 46933771 ID=cds.MS.gene049745.t1;Parent=MS.gene049745.t1
Gene Sequence

>MS.gene049745

ATGTTTTGGTGGCATTATAAAAGTCCATACAGAGTGGAAGATTCTTCAAAGCCATGGCCAATAATTCTCTGGTTGCAGGGTGGCCCTGTAAGTACTCTTTGATTGGTTCATTGAAATTAATAAATCCTTTGAAGTACCGACACATGTCGACATGGATAATCTGAACAAAATAACATAAATCTATGTAATCATGTATGTTGGTGTCTGACACCGATGTGTATCAGACACCGGGACACATCTAACCTGAAGAGCTTTACTATCCATTTTCTGTGTTTGTGTATAATGAGATATTTTCATATCATTGGATAGGGTGCTTCAGGTGTTGGGATTGGAAATTTTGAAGAGGTTGGACCTTTGGATACCAGCTTGAAGCCAAGGAACTCAACATGGTTGTTAAAAGGAGATCTCTTGTTTGTGGTAATTGGTCATGTCACAGCTCATCCATCATCATGAAAAGTGCTTTTTTATTTCTGTAGCTTTTACTTTTAGACTTTTTGTTTCCTTGTATTTAATTCATATAAGTTGTGAGTGTAAAGGTTTTTTACATCGTCAAGCAATTTTAATAGCCAGATCACTAAAAGTATTTGATTTTAATCATAACTATCTCTAAAATCGCTTGTAATGATTTTTTACATTGTCCGTCAATCGTAATCGTCAGAATTATTTTAAAGTCACATATCATTTATTGTGATTAGTTGAAAGAGTAAAACTTTTTATGGTGACAGTGTATCAAAATTAAAATCTTCTTTTTGACTATGTGGTTCTGATCAATCAATGCTTTTGATGTCATATGATAACATAGGACAATCCAGTTGGAACAGGATACAGTTTTGTGGAGGATGAGAAACTTTTTGTGAAAACAGATGATGAAGCAGCCACAGATTTGACAACATTGTTGATTAAATTATTTAATAATGATGAAAAACTTCAAAAGAGTCCTTTGTACATTGTGGCAGAGTCTTATGGTGGCAAATTTGCTGTCACTCTTGGATTATCTGCTCTTAAAGCTATTGAAGACAAAAAATTGAAACTTACACTTGGAGGTGAGAATTTCAGATCTCAGATTGTTCTTTTCTGTGTTAGTTAGGAAATGATGGACCCTTTTGTATTAAACTATTTTTAGAACATAATGACTTAAAGAAAAAGTATGATTTTGGTAAACTTTTTCTTATGTAGGTGTGGCATTAGGAGACAGTTGGATCTCACCAGAAGATTTTGTGGTAAGTAATAGAATTGTTACACCAATAAGTTTATTTTGTTGAATGATTGTTTTAATTTTAAATTACAGTTATGGTTATGCTGCAAACCTTTATATTGTGGTAAAATGGAGACAAATGTGTCTGTAATTGTAGTTGCAATGCGGTTTGTCGACGGCAATTTAAGACTTTTTGAATTTTCTTTCATATTTGATCTGAATTTGCAGTTATCATGGGGTCCTCTACTCAAAGACGTCTCAAGACTCGATGATAATGGACTGGAAAAATCAAACAGGTAAATATGTTTCCCATCTTCTCAAGTAGAAATTTTAGAGCAAAATGTATGAAACTATAATCTATAGAATGTTGATTTTCTCTTTTATCTAACAAACCCATTTTGGAGATCAGTATTGCTCAGAGGATCAAGAAGCAACTTGAAGATGGTAAATTTAATGATGCAACTGACTCATGGAGTGAACTTGAGAATCAGATTTCAACAAGCAGCAACAATGTGGTAATTTTCATTCTACTTCAATTTATCCCATAAATGAGTTCTCTTTTGTAATAAACCGCAATGTATATATTAAGTCCATGCTATTGCTCCGCACCAGCACTTTAGATCAAAGTGTATCTGGCGTCCGACACAACACAACACAGAAATATGATTACATTCAATTACTTGAATTTTCTCAAATTATTAATGGTGTTTAAGTATCGGTGTCGTCTCTGATATCCATGTCTGTGCGTCAAGGCTACTAAGTAAAAAGTCTTAAATTTTTTGTTGAAATAGGATTTTTACAATTTCTTGGTCGATGCGGGAAGTGGTTCAGACATATCAGCAATGGCAGTAGGATTAATAAAAGAAAGATCAAGGAAGAGGTACTCCGAGTATCTTACTTCCCTAAGGACAAGGTCTTCTTCTCCTGGTGGTGATGATAAACTTGGCGCTTTACTAAATGGTGTTATAAAGAAGAAGTTAAAAATCATCCCTGAGAATGTCACGTAAGTCTAATAATCCTTTAACCATGAATGAAAAGTTTTGTTCACAATTTCATTGCAAAAAATCCTTGAAATGATTGCTTAACTACTGTGTATTTGATTATAGATGGGGAGGGCAGTCCAATGAAGTTTTCACTTATCTTGAAGGTGATTTTATGAAGCCAAGAATTGATGAGGTAAGAAGATTTTTTTAAACTATGGTTTTATAAAGAAAATGCTAGATATCGCACTAGAGACACTAGTTAAGGAATCAATTATAGTAATATTTCATCGGAATTTTTTATTATAGGTTGATCAGCTACTGGCTAAAGGAGCCAATGTTACTATCTACAATGGACAAGTAAGAGTCACTTTCTACTACAGTTAGTTTCGATAATAATAAGAGGAAAATGAATAAGATACTATTGGACATGTTGACTTGGTCTTAAAGTAATAAAATTTTCTTGTTTGAGTAATGTCACAATCTTGATTTTTCTTTACGTTTAATCATATGATACTTTTATTTTATGTGTTTTTTAATATAAGAAATAACATTAAAGTGTGTTTTCCTTCGGAAAAAAAACATTAAAGTGTGTTTGATTATTATAGGTTGATCTAATTTGTGCTACCAAAGGGACTGAAGCTTGGGTTAGGAAACTCAAGTATGCAATTTTTTTTCTCTATCTCTTTACTTCATTGTTTAAAGTTAACCTCAAAGCCAATGTTATAAAAATCGGATCAGACTAGTCGGTTCAATCAGAAATTAATGTATCATTTGATTAGTTCAAACGATATTTTATAAAGTTGTTTTTAATAGTTATTTATGAAACACCAAATTAAACCGTAATTAAACTAATTGAACTACTTAAACTATAATTCGACACATTGATTCGATATTCGATCCGGATAGACAAGTCAACATTGGTCAAAGTTTCATATTTTGTTCTCAATCTTCTTTCTTTATTCCGTAGGTGGGAAGGGCTAAAAAGTTTCTTGGGGAAAGACAGAACACCCCTCTACTGTGGTGGTAACAAATCGACCAAAGGATTTTTCAAGTCATACAAAAACCTACAATTCTATTGGATTCTTGGAGCTGGTCATTTTGTAAGTCTACACCAATCATCACTAAAACAACTATGCATATATTTTCATTCATTGCATCAATAGTACTAACATTGTAACATCTAATCTAACAAAATTGACTTGTCTATTCCATATCAACTATAAATATATAAGTTTAAATAAAGAAGTACTATATTCTTATCTTCTTTTTTCACGGTAGTTAGTTATTTGAATTTTAGTTTTTAAGGTATTGTTCTTTATATTTCTTTTACTTGTTTGAATTTCACTCTAGTTACTATTAATAAATTTGGAAATGTGGAAGATCTTTAGGGGGGATTTACCTTCATTTGCGCTTAATGAGGATCATCTTAGGATTTCACACTTTTAACAGCTCATTCATATGGCTATCAAACAATAAATTTCCAAATGGAAGATCTTTTTTGTCACACTAAAAAATTCTATGTGAGCAAGAAGGGTCGGTCTAACACAAGGGGTTAGATTCTTAAAATATGACAAACTAAAGTTTGAATCACATGCAAGATATATTAAGATATATTTATATTTAGTATCTAATATGCGTTGAATAAGATAAAATTCTCTTATTTTTGGTTTGTTTATTTTTCTTAAAAAAGAATGCCACATTAAAATTATAGTACTACATTTCTGTAGTGTTTACCGTTGAGTTTGGCGTGAGCAATAAGTATTTTCTTCAAAATACTTAGGTGACATTGAGTTTTTGTGACATTGGTGATGTTAATGTATTTTGATGAGATAGAATGATAAAAAAGTGATTAAAATAAATTATTGTTTATTAGTGAGAATGATTCGTTAGAAGAGAAATAGAGACAATATCATCAAAATTCAATGCCACCCAAATACAACCCTTGCTTTTGAAGAGATACAGACATACTCCCTCCGGTCACTATTATAAGCAAAAGTTGACTTTTTAGATTCATTCAATAAAAGATGTATGTGGTCTATATATAGACTACATACATCATTTATTGAATGAATATAAAAAGTGAATTTTTGCTTATAATAGTGACCTGAGGGAGTAGATAAAATTTTGAAAAGATAACATAATTTAATGTAATCTCAAATATTGATGTCGGACACCGAACACGCCTTCAAACAGAAATGTCTAGACAACATAGTGTAAAAGCTTTTTTTCAATTTTTTAGATATAAAAATCAGAAGGTACTGAAAATAATGCAAGAAAAAAGGGATAAAGAAAGTGTCAAAGTAAAGTAGATGCATTTATGATGAGTATGTACCACCATTCACATTCAGATCTAAATGGGATACTGACCAGTGACCGTGTGTTTACCTTGTGAGGAAACATTATGGATTTATGGTCAGGTTCCTAGTTACTGTCTCTTTAGTAAGAAGAAAAAAAGGAAATGCTAACTTCTGAGTAGTACAATAATTTATGATTTGTTTCATTTTGTTTTGTTGTAACAAGATGATGTACACCCTCCGATCACTATTATAAGCAAAAAAACAATATTGTAGGTTCATTCATTTAATGATGTATGTGGTCTTTATTACCACATACATCATTAAATGAATGAATCCAAATTGTTGATTTTTGCTTATAATAGTGACCGGAGGGTGTATCTTTCTTCTGACTACTATGTTTCATTTTGTTATCTCATAAGGTCTGAATTATATAGTTCATTTATTTATGATTTGTTTGCTTGCTGCTGTAGGTACCCAATGATCAACCTTGTGTTTCATTACAAATGATAGCTTCAATTATACAATCACCAGCTACATGA
Protein sequence

>MS.gene049745.t1

MFWWHYKSPYRVEDSSKPWPIILWLQGGPGASGVGIGNFEEVGPLDTSLKPRNSTWLLKGDLLFVDNPVGTGYSFVEDEKLFVKTDDEAATDLTTLLIKLFNNDEKLQKSPLYIVAESYGGKFAVTLGLSALKAIEDKKLKLTLGGVALGDSWISPEDFVLSWGPLLKDVSRLDDNGLEKSNSIAQRIKKQLEDGKFNDATDSWSELENQISTSSNNVDFYNFLVDAGSGSDISAMAVGLIKERSRKRYSEYLTSLRTRSSSPGGDDKLGALLNGVIKKKLKIIPENVTWGGQSNEVFTYLEGDFMKPRIDEVDQLLAKGANVTIYNGQVDLICATKGTEAWVRKLKWEGLKSFLGKDRTPLYCGGNKSTKGFFKSYKNLQFYWILGAGHFVPNDQPCVSLQMIASIIQSPAT