AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09400.t1 MTR_4g056520 95.178 394 19 0 1 394 46 439 0.0 759
MS.gene09400.t1 MTR_2g084530 69.466 393 116 3 1 392 46 435 0.0 523
MS.gene09400.t1 MTR_4g084710 27.136 398 233 12 10 392 63 418 8.23e-32 126
MS.gene09400.t1 MTR_5g097180 27.068 399 232 12 10 392 61 416 5.36e-31 124
MS.gene09400.t1 MTR_4g057600 24.631 406 250 11 1 392 110 473 3.20e-29 119
MS.gene09400.t1 MTR_4g057570 25.616 406 250 10 1 392 104 471 7.04e-27 112
MS.gene09400.t1 MTR_1g050545 26.471 408 241 12 1 392 98 462 2.57e-26 110
MS.gene09400.t1 MTR_2g095750 25.616 406 247 12 1 392 115 479 9.96e-26 109
MS.gene09400.t1 MTR_1g094155 25.061 411 242 14 1 392 105 468 3.86e-25 107
MS.gene09400.t1 MTR_4g057595 23.573 403 258 9 1 392 112 475 1.11e-24 106
MS.gene09400.t1 MTR_4g057585 23.325 403 259 9 1 392 111 474 3.57e-24 104
MS.gene09400.t1 MTR_2g012850 24.331 411 257 15 1 390 64 441 4.91e-22 98.2
MS.gene09400.t1 MTR_4g089155 25.121 414 252 17 1 390 82 461 2.27e-21 96.3
MS.gene09400.t1 MTR_2g095730 23.833 407 256 11 1 392 109 476 7.31e-21 95.1
MS.gene09400.t1 MTR_8g099930 24.719 356 225 11 10 346 65 396 9.53e-21 94.4
MS.gene09400.t1 MTR_2g012860 26.341 410 252 17 1 390 70 449 3.58e-20 92.8
MS.gene09400.t1 MTR_7g080180 20.561 428 275 13 20 399 74 484 5.47e-19 89.4
MS.gene09400.t1 MTR_8g011350 23.198 444 267 17 10 404 63 481 6.10e-19 89.0
MS.gene09400.t1 MTR_3g498755 24.519 416 246 14 4 390 45 421 9.42e-19 88.2
MS.gene09400.t1 MTR_3g079590 24.877 406 247 16 1 392 107 468 1.28e-18 88.2
MS.gene09400.t1 MTR_1g021020 23.798 416 236 15 1 392 107 465 2.16e-18 87.4
MS.gene09400.t1 MTR_1g020090 24.747 396 243 16 10 392 122 475 6.03e-18 86.3
MS.gene09400.t1 MTR_1g040370 24.561 399 222 13 4 390 60 391 8.57e-18 85.1
MS.gene09400.t1 MTR_3g079620 24.155 414 248 15 1 392 107 476 8.81e-18 85.5
MS.gene09400.t1 MTR_4g075150 24.450 409 258 14 1 390 63 439 1.66e-17 84.7
MS.gene09400.t1 MTR_8g011350 21.705 387 244 11 10 349 63 437 2.03e-17 84.3
MS.gene09400.t1 MTR_7g051430 22.727 440 252 14 10 390 62 472 2.08e-17 84.3
MS.gene09400.t1 MTR_4g075150 24.205 409 257 14 1 390 63 437 2.35e-17 84.3
MS.gene09400.t1 MTR_3g434850 23.571 420 274 13 4 412 60 443 2.84e-17 84.0
MS.gene09400.t1 MTR_3g114620 47.170 106 19 2 77 182 19 87 3.43e-17 76.6
MS.gene09400.t1 MTR_3g079570 23.923 418 235 16 1 392 108 468 1.02e-16 82.4
MS.gene09400.t1 MTR_7g080180 20.588 374 246 10 20 349 74 440 1.07e-16 82.0
MS.gene09400.t1 MTR_2g449850 25.441 397 252 15 10 390 70 438 1.49e-16 81.6
MS.gene09400.t1 MTR_3g079560 23.039 408 252 15 1 392 107 468 1.86e-16 81.6
MS.gene09400.t1 MTR_1g021010 22.906 406 253 15 1 392 105 464 2.20e-16 81.3
MS.gene09400.t1 MTR_7g021130 25.369 339 220 10 20 346 74 391 3.47e-16 80.5
MS.gene09400.t1 MTR_3g079600 21.814 408 260 13 1 392 105 469 3.69e-16 80.5
MS.gene09400.t1 MTR_4g122950 25.806 248 160 8 1 238 68 301 6.94e-16 79.7
MS.gene09400.t1 MTR_3g090130 23.691 401 262 14 10 392 60 434 1.66e-15 78.6
MS.gene09400.t1 MTR_0003s0560 24.528 212 136 6 2 192 102 310 2.21e-15 77.4
MS.gene09400.t1 MTR_5g072570 31.333 150 95 3 10 151 61 210 2.27e-15 78.2
MS.gene09400.t1 MTR_3g034290 22.554 368 222 13 2 347 103 429 9.43e-15 76.3
MS.gene09400.t1 MTR_0003s0560 24.528 212 136 6 2 192 102 310 9.51e-15 76.3
MS.gene09400.t1 MTR_3g090150 31.579 152 94 4 10 151 65 216 2.01e-14 75.1
MS.gene09400.t1 MTR_2g062980 28.302 159 104 5 1 152 69 224 2.24e-14 75.1
MS.gene09400.t1 MTR_1g095560 30.597 134 85 3 1 128 62 193 4.28e-14 74.3
MS.gene09400.t1 MTR_1g095560 30.597 134 85 3 1 128 62 193 4.50e-14 73.9
MS.gene09400.t1 MTR_7g051430 31.410 156 91 5 10 151 62 215 7.20e-14 73.2
MS.gene09400.t1 MTR_3g079630 29.193 161 103 5 1 154 107 263 1.50e-13 72.8
MS.gene09400.t1 MTR_2g063000 29.078 141 89 4 1 133 68 205 1.91e-13 72.4
MS.gene09400.t1 MTR_7g013790 22.879 389 255 12 20 390 79 440 1.94e-13 72.0
MS.gene09400.t1 MTR_2g062990 29.496 139 89 4 1 133 69 204 3.91e-13 71.2
MS.gene09400.t1 MTR_3g034290 23.529 238 147 7 2 223 103 321 5.26e-13 70.5
MS.gene09400.t1 MTR_2g081620 27.044 159 106 5 1 152 70 225 7.14e-13 70.5
MS.gene09400.t1 MTR_4g122960 29.851 134 84 4 1 128 68 197 1.45e-12 69.7
MS.gene09400.t1 MTR_1g095540 30.147 136 83 4 1 128 62 193 1.51e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09400.t1 AT2G27920 64.467 394 138 1 1 392 47 440 0.0 520
MS.gene09400.t1 AT2G27920 62.192 365 136 1 30 392 4 368 4.82e-160 456
MS.gene09400.t1 AT2G27920 59.202 326 131 1 69 392 48 373 7.35e-133 387
MS.gene09400.t1 AT1G15000 26.601 406 235 11 10 398 55 414 5.80e-31 123
MS.gene09400.t1 AT5G22980 25.616 406 245 11 1 392 113 475 4.25e-29 119
MS.gene09400.t1 AT3G45010 25.061 407 248 11 1 392 116 480 6.15e-29 119
MS.gene09400.t1 AT3G10410 25.245 408 244 13 1 392 114 476 5.56e-23 101
MS.gene09400.t1 AT4G15100 26.225 408 260 15 1 390 73 457 3.38e-20 92.8
MS.gene09400.t1 AT1G11080 24.816 407 269 14 1 390 79 465 2.77e-19 90.1
MS.gene09400.t1 AT1G11080 24.816 407 269 14 1 390 79 465 2.88e-19 90.1
MS.gene09400.t1 AT4G12910 21.968 437 274 12 10 399 67 483 6.74e-19 89.0
MS.gene09400.t1 AT3G25420 22.695 423 268 16 20 399 74 480 5.83e-17 83.2
MS.gene09400.t1 AT2G35780 23.741 417 261 13 1 399 59 436 9.62e-17 82.4
MS.gene09400.t1 AT3G52000 24.936 389 233 16 20 390 108 455 1.13e-16 82.4
MS.gene09400.t1 AT5G42230 32.667 150 93 3 10 151 60 209 1.27e-16 82.0
MS.gene09400.t1 AT5G42230 32.667 150 93 3 10 151 60 209 1.27e-16 82.0
MS.gene09400.t1 AT1G43780 25.847 236 147 7 10 227 69 294 1.40e-16 82.0
MS.gene09400.t1 AT4G12910 21.875 384 245 10 10 349 67 439 1.94e-16 81.3
MS.gene09400.t1 AT3G17180 25.391 256 159 10 1 240 68 307 2.85e-16 80.9
MS.gene09400.t1 AT3G17180 25.391 256 159 10 1 240 68 307 3.62e-16 80.9
MS.gene09400.t1 AT5G42240 30.539 167 103 4 10 163 64 230 4.12e-16 80.5
MS.gene09400.t1 AT5G23210 28.241 216 141 6 1 207 80 290 4.76e-16 80.1
MS.gene09400.t1 AT5G23210 28.241 216 141 6 1 207 80 290 5.57e-16 80.1
MS.gene09400.t1 AT3G07990 31.677 161 97 5 1 152 63 219 6.66e-16 79.7
MS.gene09400.t1 AT4G30810 24.250 400 265 16 1 390 67 438 8.58e-16 79.7
MS.gene09400.t1 AT2G12480 31.333 150 95 3 10 151 63 212 3.89e-15 77.4
MS.gene09400.t1 AT2G12480 31.333 150 95 3 10 151 63 212 3.92e-15 77.4
MS.gene09400.t1 AT2G12480 31.333 150 95 3 10 151 63 212 3.94e-15 77.4
MS.gene09400.t1 AT2G24010 33.582 134 79 3 1 128 59 188 4.38e-15 77.4
MS.gene09400.t1 AT2G12480 31.333 150 95 3 10 151 63 212 4.70e-15 77.4
MS.gene09400.t1 AT2G33530 23.426 397 265 14 10 390 65 438 8.68e-15 76.3
MS.gene09400.t1 AT5G08260 29.341 167 98 5 1 155 69 227 1.04e-14 76.3
MS.gene09400.t1 AT1G61130 34.043 141 84 3 20 151 75 215 1.04e-14 76.3
MS.gene09400.t1 AT1G28110 24.317 366 235 11 4 353 61 400 1.13e-14 75.9
MS.gene09400.t1 AT1G28110 24.317 366 235 11 4 353 61 400 1.13e-14 75.9
MS.gene09400.t1 AT3G02110 30.935 139 90 2 20 152 81 219 2.32e-14 75.1
MS.gene09400.t1 AT2G24000 34.783 115 69 2 20 128 75 189 2.74e-14 74.7
MS.gene09400.t1 AT3G52020 25.432 405 237 20 10 390 111 474 4.08e-14 74.3
MS.gene09400.t1 AT2G05850 23.367 398 241 16 16 390 104 460 1.91e-12 69.3
MS.gene09400.t1 AT4G30610 32.558 129 77 3 10 128 63 191 3.75e-12 68.2
MS.gene09400.t1 AT1G73290 30.534 131 76 3 1 121 61 186 5.09e-12 67.0
MS.gene09400.t1 AT1G73290 30.534 131 76 3 1 121 61 186 9.46e-12 66.6
MS.gene09400.t1 AT1G73290 30.534 131 76 3 1 121 61 186 1.03e-11 66.6
MS.gene09400.t1 AT1G73300 31.298 131 75 3 1 121 62 187 1.39e-11 66.2
MS.gene09400.t1 AT1G73300 31.298 131 75 3 1 121 62 187 1.39e-11 66.2
MS.gene09400.t1 AT5G36180 31.298 131 75 3 1 121 62 187 2.47e-11 65.5
MS.gene09400.t1 AT2G35770 28.302 159 101 5 1 151 67 220 3.34e-11 65.5
MS.gene09400.t1 AT5G22960 30.275 109 61 1 20 128 63 156 4.32e-11 62.4
MS.gene09400.t1 AT1G73280 23.616 271 173 8 1 245 62 324 4.97e-11 64.3
MS.gene09400.t1 AT1G73280 21.789 436 243 17 1 406 62 429 6.72e-11 64.3
MS.gene09400.t1 AT1G73270 31.298 131 75 3 1 121 62 187 7.34e-11 64.3
MS.gene09400.t1 AT1G73270 29.012 162 99 4 1 151 62 218 7.47e-11 64.3

Find 105 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACAATTCTATTGGATTCT+TGG 0.200204 4.1:+41376568 MS.gene09400:CDS
CCCTGCAACCAGAGAATTAT+TGG 0.209686 4.1:-41373153 None:intergenic
CTTCTTACCTCATCAATTCT+TGG 0.221137 4.1:-41375682 None:intergenic
AAACTTGGCCCTTTACTAAA+TGG 0.253144 4.1:+41375459 MS.gene09400:CDS
AGCCACCACCAGTGAGTTTC+CGG 0.263622 4.1:-41380138 None:intergenic
AATTCAACATGGTTGTTAAA+AGG 0.269721 4.1:+41373476 MS.gene09400:CDS
GGCAAATTTGCTGTCACTCT+TGG 0.293076 4.1:+41374056 MS.gene09400:CDS
GCCAATAATTCTCTGGTTGC+AGG 0.294647 4.1:+41373152 MS.gene09400:CDS
CAAGAATCCAATAGAATTGT+AGG 0.295802 4.1:-41376567 None:intergenic
ATCATTGGATAGGGTGCTTC+AGG 0.322191 4.1:+41373395 MS.gene09400:intron
TTGCAGAAGCACACATGTTT+TGG 0.324024 4.1:+41373082 None:intergenic
TAGACTTACGTGACATTCTC+AGG 0.332673 4.1:-41375510 None:intergenic
AAGATAAGTGAAAACTTCAT+TGG 0.346770 4.1:-41375641 None:intergenic
TTACTTACCACAAAATCTTC+TGG 0.356577 4.1:-41374536 None:intergenic
TACATTGTGGCAGAGTCTTA+TGG 0.367175 4.1:+41374032 MS.gene09400:CDS
ACTTATGTAGGTGTGGCATT+AGG 0.381627 4.1:+41374497 MS.gene09400:intron
GGATAGGGTGCTTCAGGTGT+TGG 0.387749 4.1:+41373401 MS.gene09400:intron
GATAGGGTGCTTCAGGTGTT+GGG 0.400100 4.1:+41373402 MS.gene09400:intron
TTATGACACCATTTAGTAAA+GGG 0.401053 4.1:-41375467 None:intergenic
GAGAAGAAGACCCTGTCCTT+AGG 0.409718 4.1:-41375422 None:intergenic
GAAGAATCTTCCACTCTGTA+TGG 0.410067 4.1:-41373120 None:intergenic
GTCTCAAGACTCGATGATAA+TGG 0.410949 4.1:+41374776 MS.gene09400:CDS
AACAACCATGTTGAATTCCT+TGG 0.417373 4.1:-41373470 None:intergenic
GAGTTTCCGGTCATCTTCTC+CGG 0.418323 4.1:-41380125 None:intergenic
AACCCAAGCTTCAGTCCCTT+TGG 0.424615 4.1:-41376128 None:intergenic
TACAATTTCTTGGTCGATGC+GGG 0.430582 4.1:+41375318 MS.gene09400:CDS
TTCTTGGTCGATGCGGGAAG+TGG 0.440552 4.1:+41375324 MS.gene09400:CDS
AAACTGTATCCTGTTCCAAC+TGG 0.449212 4.1:-41373897 None:intergenic
TTCTATTGGATTCTTGGAGC+TGG 0.449461 4.1:+41376574 MS.gene09400:CDS
AGAAGAAGACCCTGTCCTTA+GGG 0.450693 4.1:-41375421 None:intergenic
GGTGCTTCAGGTGTTGGGAT+TGG 0.451236 4.1:+41373407 MS.gene09400:CDS
AAAAGGAGATCTCTTGTTTG+TGG 0.452395 4.1:+41373493 MS.gene09400:CDS
ATTATAGGTTGATCAGCTAC+TGG 0.456406 4.1:+41375803 MS.gene09400:intron
CGAGTCTTGAGACGTCTTTG+AGG 0.459472 4.1:-41374766 None:intergenic
TCTTTATTCCGTAGGTGGGA+AGG 0.462971 4.1:+41376457 MS.gene09400:intron
AAGGGACTGAAGCTTGGGTT+AGG 0.462980 4.1:+41376131 MS.gene09400:CDS
GGTTGATCAGCTACTGGCTA+AGG 0.466777 4.1:+41375809 MS.gene09400:intron
TACCAAAGGGACTGAAGCTT+GGG 0.469620 4.1:+41376126 MS.gene09400:CDS
CTACCAAAGGGACTGAAGCT+TGG 0.476951 4.1:+41376125 MS.gene09400:CDS
TTTATGACACCATTTAGTAA+AGG 0.477365 4.1:-41375468 None:intergenic
CCTTAGGGAAGTAAGATACT+TGG 0.479071 4.1:-41375406 None:intergenic
CAGGACAATCCAGTTGGAAC+AGG 0.483965 4.1:+41373888 MS.gene09400:intron
AGGACAGGGTCTTCTTCTCC+TGG 0.484963 4.1:+41375426 MS.gene09400:CDS
ATCTAATTTGTGCTACCAAA+GGG 0.486363 4.1:+41376113 MS.gene09400:CDS
CTTTATTCCGTAGGTGGGAA+GGG 0.493124 4.1:+41376458 MS.gene09400:intron
CCTGGTGGTGATGATAAACT+TGG 0.495610 4.1:+41375444 MS.gene09400:CDS
GATTAATAAAAGAAAGATCA+AGG 0.496246 4.1:+41375373 MS.gene09400:CDS
TATCTTACTTCCCTAAGGAC+AGG 0.502007 4.1:+41375411 MS.gene09400:CDS
AGCCATGGCCAATAATTCTC+TGG 0.505294 4.1:+41373145 MS.gene09400:CDS
ATCTGAATATGTAGTTGTCA+TGG 0.508315 4.1:+41374735 MS.gene09400:intron
GACCGGAAACTCACTGGTGG+TGG 0.516684 4.1:+41380136 MS.gene09400:CDS
AAATTGAAACTTACACTTGG+AGG 0.521572 4.1:+41374110 MS.gene09400:CDS
TAAAAGAAAGATCAAGGAAG+AGG 0.522688 4.1:+41375379 MS.gene09400:CDS
TTAATGATGCAACTGACTCA+TGG 0.525154 4.1:+41374971 MS.gene09400:CDS
AACCAGAGAATTATTGGCCA+TGG 0.526681 4.1:-41373147 None:intergenic
ACTCACTGGTGGTGGCTCTC+CGG 0.528276 4.1:+41380144 MS.gene09400:CDS
TGGATACCAGCTTGAAGCCA+AGG 0.530260 4.1:+41373453 MS.gene09400:CDS
TGAATTCCTTGGCTTCAAGC+TGG 0.530298 4.1:-41373459 None:intergenic
ATCAAGAAGCAACTTGAAGA+TGG 0.537399 4.1:+41374943 MS.gene09400:CDS
GATCTAATTTGTGCTACCAA+AGG 0.546200 4.1:+41376112 MS.gene09400:CDS
CACAAGCCGGAGAAGATGAC+CGG 0.547830 4.1:+41380119 MS.gene09400:CDS
TTTGTTACCACCACAGTAGA+GGG 0.555703 4.1:-41376512 None:intergenic
AAGACTCGATGATAATGGAC+TGG 0.560259 4.1:+41374781 MS.gene09400:CDS
TCTGAATATGTAGTTGTCAT+GGG 0.564083 4.1:+41374736 MS.gene09400:intron
AAAGAGTCCTTTGTACATTG+TGG 0.565413 4.1:+41374019 MS.gene09400:CDS
GAAGATGACCGGAAACTCAC+TGG 0.566583 4.1:+41380130 MS.gene09400:CDS
TCCATTGTAGACAGTAACAT+TGG 0.569749 4.1:-41375835 None:intergenic
GACATATCAGCAATGGCAGT+AGG 0.570461 4.1:+41375351 MS.gene09400:CDS
CCAATAATTCTCTGGTTGCA+GGG 0.571892 4.1:+41373153 MS.gene09400:CDS
CCAAGTATCTTACTTCCCTA+AGG 0.573294 4.1:+41375406 MS.gene09400:CDS
CTTCATTCTAAACACATCGC+CGG 0.576048 4.1:-41380163 None:intergenic
TATGAAGCCAAGAATTGATG+AGG 0.578416 4.1:+41375675 MS.gene09400:CDS
AAGAAATTGAAACTTACACT+TGG 0.579577 4.1:+41374107 MS.gene09400:CDS
TATTTGATTATAGATGGGGA+GGG 0.582452 4.1:+41375614 MS.gene09400:intron
CAATAGAAGAAAACACAAGC+CGG 0.586867 4.1:+41380106 MS.gene09400:CDS
GTTGATCAGCTACTGGCTAA+GGG 0.587456 4.1:+41375810 MS.gene09400:CDS
TGGAAGATTCTTCAAAGCCA+TGG 0.593562 4.1:+41373130 MS.gene09400:CDS
GGCTTCAAGCTGGTATCCAA+AGG 0.594499 4.1:-41373449 None:intergenic
ATTTGTTACCACCACAGTAG+AGG 0.594837 4.1:-41376513 None:intergenic
TTACAATTTCTTGGTCGATG+CGG 0.596051 4.1:+41375317 MS.gene09400:CDS
GTGTGGCATTAGGAGACAGT+TGG 0.599447 4.1:+41374507 MS.gene09400:CDS
AGACTTACGTGACATTCTCA+GGG 0.602881 4.1:-41375509 None:intergenic
GTATTTGATTATAGATGGGG+AGG 0.603981 4.1:+41375613 MS.gene09400:intron
CTTGAGACGTCTTTGAGGAG+AGG 0.606726 4.1:-41374761 None:intergenic
ATAACACAGGACAATCCAGT+TGG 0.609437 4.1:+41373882 MS.gene09400:intron
GACTCTGCCACAATGTACAA+AGG 0.618531 4.1:-41374026 None:intergenic
GCCAATGTTACTGTCTACAA+TGG 0.619525 4.1:+41375834 MS.gene09400:CDS
TGGTTCAGACATATCAGCAA+TGG 0.623686 4.1:+41375344 MS.gene09400:CDS
ACAGGGTCTTCTTCTCCTGG+TGG 0.631577 4.1:+41375429 MS.gene09400:CDS
ATCTTACTTCCCTAAGGACA+GGG 0.631973 4.1:+41375412 MS.gene09400:CDS
CCAAGTTTATCATCACCACC+AGG 0.637624 4.1:-41375444 None:intergenic
AAATAATTTAATCAACAATG+TGG 0.638143 4.1:-41373976 None:intergenic
TTCAACAAGCAGCAACGATG+TGG 0.652548 4.1:+41375014 MS.gene09400:CDS
TGAAGCCAAGGAATTCAACA+TGG 0.659940 4.1:+41373465 MS.gene09400:CDS
TGGAGATCAGTATTGCTCAG+AGG 0.661077 4.1:+41374920 MS.gene09400:intron
GGTGGTAACAAATCGACCAA+AGG 0.673311 4.1:+41376523 MS.gene09400:CDS
GACAGAACACCCCTCTACTG+TGG 0.677504 4.1:+41376502 MS.gene09400:CDS
AGAACACCCCTCTACTGTGG+TGG 0.678028 4.1:+41376505 MS.gene09400:CDS
TTGTTACCACCACAGTAGAG+GGG 0.680201 4.1:-41376511 None:intergenic
CAACAATGTGGTCAAATCTG+TGG 0.683124 4.1:-41373964 None:intergenic
CTGAATATGTAGTTGTCATG+GGG 0.684612 4.1:+41374737 MS.gene09400:intron
ATAATTCTCTGGTTGCAGGG+TGG 0.685909 4.1:+41373156 MS.gene09400:CDS
TTATAAAAGTCCATACAGAG+TGG 0.699820 4.1:+41373110 MS.gene09400:CDS
ATTGTGGCAGAGTCTTATGG+TGG 0.700649 4.1:+41374035 MS.gene09400:CDS
GATGACCGGAAACTCACTGG+TGG 0.721425 4.1:+41380133 MS.gene09400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr4.1 gene 41373096 41380178 41373096 ID=MS.gene09400
chr4.1 mRNA 41373096 41380178 41373096 ID=MS.gene09400.t1;Parent=MS.gene09400
chr4.1 exon 41373096 41373182 41373096 ID=MS.gene09400.t1.exon1;Parent=MS.gene09400.t1
chr4.1 CDS 41373096 41373182 41373096 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41373407 41373514 41373407 ID=MS.gene09400.t1.exon2;Parent=MS.gene09400.t1
chr4.1 CDS 41373407 41373514 41373407 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41373891 41374131 41373891 ID=MS.gene09400.t1.exon3;Parent=MS.gene09400.t1
chr4.1 CDS 41373891 41374131 41373891 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41374507 41374550 41374507 ID=MS.gene09400.t1.exon4;Parent=MS.gene09400.t1
chr4.1 CDS 41374507 41374550 41374507 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41374749 41374816 41374749 ID=MS.gene09400.t1.exon5;Parent=MS.gene09400.t1
chr4.1 CDS 41374749 41374816 41374749 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41374930 41375035 41374930 ID=MS.gene09400.t1.exon6;Parent=MS.gene09400.t1
chr4.1 CDS 41374930 41375035 41374930 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41375312 41375523 41375312 ID=MS.gene09400.t1.exon7;Parent=MS.gene09400.t1
chr4.1 CDS 41375312 41375523 41375312 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41375627 41375696 41375627 ID=MS.gene09400.t1.exon8;Parent=MS.gene09400.t1
chr4.1 CDS 41375627 41375696 41375627 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41375810 41375860 41375810 ID=MS.gene09400.t1.exon9;Parent=MS.gene09400.t1
chr4.1 CDS 41375810 41375860 41375810 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41376109 41376161 41376109 ID=MS.gene09400.t1.exon10;Parent=MS.gene09400.t1
chr4.1 CDS 41376109 41376161 41376109 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41376471 41376603 41376471 ID=MS.gene09400.t1.exon11;Parent=MS.gene09400.t1
chr4.1 CDS 41376471 41376603 41376471 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
chr4.1 exon 41380095 41380178 41380095 ID=MS.gene09400.t1.exon12;Parent=MS.gene09400.t1
chr4.1 CDS 41380095 41380178 41380095 ID=cds.MS.gene09400.t1;Parent=MS.gene09400.t1
Gene Sequence

>MS.gene09400

ATGTTTTGGTGGCATTATAAAAGTCCATACAGAGTGGAAGATTCTTCAAAGCCATGGCCAATAATTCTCTGGTTGCAGGGTGGCCCTGTAAGTACTCTTTGATTGGTTCATTGAAATTAATAAATCCTTGGAAGTACCGACACATGTCGACATCGATAATAATCTGAGGAAATAACATAAATCAACATAATCATGTGTGTTGGTATCTGACACTGATGTGTATCAGACATCGGGACACATCTAACCTGAAGAGCTTTACTATCCATTTTCTGTGTTTGTGTATAATGAGATATTTTCATATCATTGGATAGGGTGCTTCAGGTGTTGGGATTGGAAATTTTGAAGAGGTTGGACCTTTGGATACCAGCTTGAAGCCAAGGAATTCAACATGGTTGTTAAAAGGAGATCTCTTGTTTGTGGTAATTGGTCATGTCACAGCTCATCCATCATCATGAAAAGTGCTTTTTTATTTCTGTAGCTTTTGCTTTTAGACTCTTTGTTTCCTTGTATTTAATTCATATAAGTTGTGAGTGTAAAGATTTTTTACATCGTCAATCAATTTTAATCGCCAAATCACTAAAAATATTTGATTTTAATCATAACTATCTCTAAAGTCACGTGTAAATATTTTTTACATTGTCCGTTCACCGTAATCGTCAAAGTCAAAGATATGATTTATTGTGATTAGTTGAAAGAGTAAAACTATTTATGGTGACAGTGCATCAAAATTAAAATCTTGTTTTTGACTATGTGGTTCTGATCAATCAATGCTTTTGATGTCAAATGATAACACAGGACAATCCAGTTGGAACAGGATACAGTTTTGTGGAGGATGAGAAACTTTTTGTGAAAACAGATGATGAAGCAGCCACAGATTTGACCACATTGTTGATTAAATTATTTAATAATGATGAAAAACTTCAAAAGAGTCCTTTGTACATTGTGGCAGAGTCTTATGGTGGCAAATTTGCTGTCACTCTTGGATTATCTGCTCTTAAAGCTATTGAAGACAAGAAATTGAAACTTACACTTGGAGGTGAGAATCTTCTCTTGAAATGCACCATCTTCAGATTTCAGATCTCAGATTGGTCTTATTTCAATTTATGGTTATTGAAAGCACACAGACACCGGACACGACACGGACACTGACACGCCGACGCAGATAATAATTTGAGCAAATGATATAATTCAGTGTAATCATAGGTGTTGTGTCGGTACACGTGTCCGACACCGGGACACACCTAATCCGAGGAGTGTCCGTGCTTCATAAATTCTGACTAATGAATGGGATTAGTTAACTTGTTCTTCTTTGTGTTGGTTAGGAAATGATGGACCCTTTTGTATTAAACTATTTTTAGAACATAATACCTTAAAGAAAAAGTATGATTTTGGGAAACTTTTACTTATGTAGGTGTGGCATTAGGAGACAGTTGGATCTCACCAGAAGATTTTGTGGTAAGTAATAGAATTGTTATACCAATAAGTTTATTTTATTGAACGATTGTTTTAATTTTAAATTACAGTTATGGTTACGCTGCAAACCTTTATATTGTGGTAAAATTTGTCTGTAATTGTAGTTGCAATGCCGATTACGGACGGCAATTTAAAACTTTTTGACTTTTCACATATTTCATACTTGATCTGAATATGTAGTTGTCATGGGGTCCTCTCCTCAAAGACGTCTCAAGACTCGATGATAATGGACTGGAAAAATCAAACAGGTAAATATGTTTCCCATCTTCTCAAGTAGAAATTTTAGAGCAAAATGTATGAAACTATAATCTATAGAATGTTGATTTTCTCTTTAATCTAACAAACCCATTTTGGAGATCAGTATTGCTCAGAGGATCAAGAAGCAACTTGAAGATGGTAAATTTAATGATGCAACTGACTCATGGAGTGAACTTGAGAATCAGATTTCAACAAGCAGCAACGATGTGGTAATTTTCATTCTACTTCAATTTATCCCATAAATGAGTTCTCTTTTGTAATAAACCGCAATGTATATATTAAGTCCATGCTATTGCTCCGCACCAGCACTTTAGATCAAAGTGTATCTGGCGTCCGACACAACACAACACAGAAATATGATTACATTCAATTACTTGAATTTTCTCAAATTATTAATGGTGTTTAAGTATCGGTGTCGTCTCTGATATCCATGTCTGTGCGTCAAGGCTACTAAGTAAAAAGTCTTAAATTTTTTGTTGAAATAGGATTTTTACAATTTCTTGGTCGATGCGGGAAGTGGTTCAGACATATCAGCAATGGCAGTAGGATTAATAAAAGAAAGATCAAGGAAGAGGTACTCCAAGTATCTTACTTCCCTAAGGACAGGGTCTTCTTCTCCTGGTGGTGATGATAAACTTGGCCCTTTACTAAATGGTGTCATAAAGAAGAAGTTAAAAATCATCCCTGAGAATGTCACGTAAGTCTAATAATCCTTTAACCATGAATGAAAAGTTTTGTTCACAATTTCATTGCAAAAAATCCATGAAATGATTGCTTAACTACTGTGTATTTGATTATAGATGGGGAGGGCAGTCCAATGAAGTTTTCACTTATCTTGAAGGTGATTTTATGAAGCCAAGAATTGATGAGGTAAGAAGATTTTTTTAAACTATGGTTTTATAAAGAAAATGCTAACTATCGCATCAGAGACACTAGTTAAGGAATCAATTATAGTAATATTTCATCGGAATTTTTTATTATAGGTTGATCAGCTACTGGCTAAGGGAGCCAATGTTACTGTCTACAATGGACAAGTAAGAGTCACTTTCTACTGCAGTTAGTTTCGATAATAATAAGAGGAAAATGAATAAGATACTATTGGACATGTTGACTTGGTCTTAAAGTAATCAAATTTTCTTGTTTGAGTAATGTCACAATCTTGATTTTTCTTTACGTTTAATCATATGATACTTTTATTTTATGTGTTTTTTAATATAAGAAATAACATTAAAGTGTGTTTTCCTTCGGAAAAAAAACATTAAAGTGTGTTTGATTATTATAGGTTGATCTAATTTGTGCTACCAAAGGGACTGAAGCTTGGGTTAGGAAACTCAAGTATGCAATTTTTTTTCTCTATCTCTTTACTTCATTGTTTAAAGTTAACCTCAAAGCCAATGTTATAAAAATCGGATCAGACTAGTCGGTTCAATCAGAAATTAATGTATCATTTAATTAGTTCAAACGATATTTTATAAAGTTGTTTTTAATAGTTATTTATGAAACACCAAATTAAACCGTAATTAAACTAATTGAACTACTTAAACTATAATTTGACACATTGATTCGATATTCGATCCGGATAGACAAGTCAACATTGGTCAAAGTTTCATATTTTGTTCTCAATCTTCTTTCTTTATTCCGTAGGTGGGAAGGGCTAAAAAGTTTCTTGGGGAAAGACAGAACACCCCTCTACTGTGGTGGTAACAAATCGACCAAAGGATTTTTCAAGTCATACAAAAACCTACAATTCTATTGGATTCTTGGAGCTGGTCATTTTGTAAGTCTACACCAATCATCACTAAAACAACTATGCATATATTTTCATTCATTGCATCAATAGTACTAACATTGTAACATCTAATCTAACAAAATTGACTTGTCTATTCCATATCAACTATAAATATATAAGTTTAAATAAAGAAGTACTATATTCTTATCTTCTTTTTTCACGGTAGTTAGTTATTTGAATTTTAGTTTTTAAGGTATTGTTCTTTATATTTCTTTTACTTGTTTGAATTTCACTCTAGTTACTATTAATAAATTTGGAAATGTGGAAGATCTTTAGGGGGGATTTACCTTCATTTGCGCTTAATGAGGATCATCTTAGGATTTCACACTTTTAACAGCTCATTCATATGTTGCTATCAAACAATAAATTTCCAAATTCTATATTTTACGGTTTCTTTTTTGTCACACTAAAAAATTCTATGTGAGCAAGAAGGGTCAGTCTAACACAAGGGGTTAGATTCTTAAAATATGACAAACTAAGGTTTGAATCACATGTGAAATGTATTTATATTTAGTGTCTGGTATGCGTTGAATAAGATAAAATTCCCTTATTTTTGGTTTGTTTATTTTTCTTTAAAAAGAATGCCACATTAAAATTATAGTACTACATTTCTGTAGTGTTTACCGTTGAGTTTGGCGTGAGCAATAAGTATTTTCTTCAAAATACTTAGGTGACATTGGTGATGTTAATATATTTTGATGAGATAGAATGATCAAAAAATGATTAAAATAAATTATTGTTTATTAGTGAGAATGATTTGTTAGAAGAGAAATAGAGACAATGTCATCCAAATACAACCCTTGCCTTTGAAGAGATACAGACACATAGATAAAATTTTGAAAAGATAACATAATTTAATGTAATCTCAAATGTCGATGTCGGACACCGAACACGCCTTCAATCAGAAATGTTTGGACAACATACAACATAGTGTAAAAGCTTTTTTTCAATTTTTTAGATATAAAAATCAGACGGTACTGAAAATAATGCAAGAAAAAAGGGATAAAGAAAGTGTCAAAGTAAAGTAGATTCATTTATGATGATGAGTATGTACCACCATTCAGATCTAAATGGGATACTGACCAGTGACCGTGTGTTTACCTTGTGAGGAAACATTATGGATTTATGGTCAGGTTCCTAGTTACTGTCTCTTTAGTAAGAAGAAAAAAAGGAAATGCTAACTTCTGAGTAGTACAATAATTTATGATTTGTTTCATTTTATTTTGTTGTAACAAGATGATGTACAGGTGTATCTTTCTTCTGATTACTATGTTTCATTTTGTTATGTCATAAGGTCTGAATTAAATAGTACATTTATTTATGATTTGTTTGCTTGCTGCTGTAGGTACCCAATGATCAACCTTGTGTTTCATTACAAATGATAGCTTCAATTATACAATCACCAGCTACATGAACTACTGAAGTTATGCATAGAAAAGGAAAATTTCTAGTAGAATAAATTAAATTGTGTCCATGAAAGAGAATTCATTGTTGATCAAGTAAGAAAGAGTTTCTTCAACAAAAAAAAAGTAAGAAAGAGTCAACAAGCAAACACTGCAAAAGGATCAGAAAAAGAATTGCAGGGTGTTATTTATTGTTTCTTTTTACATTGTTATTCTTTTTCCTTGTCCTTATTATTATTTAGTATATAAAATGGACTTTTTCTTCTGAATTTGGTTATTCTTGCACGTCCCTGTTTTCTGAATAATAGTAAATAAAATAAGTTATTGATTGGGTCATGTTAACTCATAGTGCCCTTAAAGATTTAAATTTTTTTTTTTGAGAGCAAAAAATATATATATTTTTATAGAGAAAGTTATTTTTTAAAGTTTTAATGTGATGAATATACAATTTTTAAAATAAAATTTTCACTTTAAACTTTTACTAAACAAGTGTCTTATGACTTTTTTTAGCATTTCCCATAAATTAAAGTACTCCATCCGTTTTTAAATATAAGTGAAATTCATTTTTTAGGTTCATTTATTTAATGATATATGTGGTTTATAATATGGACCACATACATCATTAAATAAATGAACTTAAAAAATGAATTTTTCTTATATTTAGAAACGGAGGGATTATCGGCTAGTGTATTGTTTTTTATGGTTGAAATAAGTAGTTAGATCCAATGACATTCACGAGAAGACATACTTTTTCAGAGGTGGATTGTTGGTGACATAATGATGACTATCCCACGTAATAATGCCTTTTGGCCCTTAATAAAGATTTTTCTCAAAAATGATGGTGGGTGGTATTTGTATTTGATCTATGAAAATGCTAGCAAGTGTCCTAAGAACATTCACAATGGTAGTTTTTTAATAAGGACTCCTTAAATAGACCACACGTGATACATCACTTATTTATAATATTTTAATAAAATTACTTATTAAGGACTCAATGACTCTAATGACAATACACTAATAAGGACTCCACCGAAAAATACTTAAATATGTCCCACTATCTTTACATCATTAAACAAAAATAATTTACCTATTACTCCTTTTTACAAGTGGGACCAAAGTAGTACACATTTTATTACTCTTTTATGCAAGTGGGACCAAGTAGTACACATTTTATTACTTTTTTAAACGTGGGATCCGTTAGTTGCCTAGGAAAGAGAGGGTCCTTATATAGTTGCCCGTTCCTTAACGGGGACTCATTTTTTCTTCCTCCAATGAAGGGTCCTTAACGGGGAGTGGTCCTTGTTAAGTAAGGACCCCCTCATTGGAGATGCTCTAATGCATTGTTTAAGCATCTAAAAGTAGCAACTTTTGCATTGAAAATTGTATGGTTATGACTTTAACATGTGTTGGACTTGTATTTTCAAGACATAGTTTCTTTTTGGAAAATGTTAGGTGGCATTTAGGGTGGGTGAGGGAAAGAATTCCCCACTATGGGAAAGTTGTTTGTTTACCATTAGATTAAAATGGAGCAATGGTCTATCTATACCAAATCTTTTTTAGTTTGTCTTCAACCTTATCAACCTCCAACGACAACCACCATTACCAACCCAGATTTTCCATTGCTGTCGGAAACGTCTGTACAACTATAACAACCTTCGGTGCCTCAACATGAAAGTAATGAGTTTCCGTCCAGTTTCTTAAAAGCTTTAGAAATATTAGTTAAATTGTTGTCATTCCTATATTGTTTAATCTTCTTGAATTATTAAAATAACACATTAGAGTCATAGTTATGTGCTGGTCATGATTAAAGCGTTCCGTCAGAGATTCGATTCATCTCTACAATGTTGCTCAACATGTAATAATAATGACGTCACATGATGAACAGCGATAGTTAAAGCTTAGAAAAATATCAGATCTCCATAGAAGTAAAAATGATGAACTGTAATTTTAATGAGTTTAGTATCTCTTCAAGATAAGAACAGATCTTCAATAGTAATTTTAATACGCATTTAGCTGAATCGATTGGAACTGCGCTAAACATGATGAACTGTAATTTTAATGCGTTATTCTGATTAGTTGAAAAATATCAATAGAAGAAAACACAAGCCGGAGAAGATGACCGGAAACTCACTGGTGGTGGCTCTCCGGCGATGTGTTTAG

Protein sequence

>MS.gene09400.t1

MFWWHYKSPYRVEDSSKPWPIILWLQGGPGASGVGIGNFEEVGPLDTSLKPRNSTWLLKGDLLFVDNPVGTGYSFVEDEKLFVKTDDEAATDLTTLLIKLFNNDEKLQKSPLYIVAESYGGKFAVTLGLSALKAIEDKKLKLTLGGVALGDSWISPEDFVLSWGPLLKDVSRLDDNGLEKSNSIAQRIKKQLEDGKFNDATDSWSELENQISTSSNDVDFYNFLVDAGSGSDISAMAVGLIKERSRKRYSKYLTSLRTGSSSPGGDDKLGPLLNGVIKKKLKIIPENVTWGGQSNEVFTYLEGDFMKPRIDEVDQLLAKGANVTVYNGQVDLICATKGTEAWVRKLKWEGLKSFLGKDRTPLYCGGNKSTKGFFKSYKNLQFYWILGAGHFLKNINRRKHKPEKMTGNSLVVALRRCV