Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73540.t1 | RHN51536.1 | 70.8 | 89 | 26 | 0 | 75 | 163 | 1 | 89 | 4.20E-27 | 131.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73540.t1 | A0A396HE54 | 70.8 | 89 | 26 | 0 | 75 | 163 | 1 | 89 | 3.0e-27 | 131.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene73540 | 0.804288 | 2.32E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene73540 | 0.844026 | 9.75E-59 | -1.69E-46 |
| MS.gene049968 | MS.gene73540 | 0.801009 | 1.10E-48 | -1.69E-46 |
| MS.gene050430 | MS.gene73540 | 0.805601 | 1.23E-49 | -1.69E-46 |
| MS.gene050611 | MS.gene73540 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene051575 | MS.gene73540 | 0.805092 | 1.58E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene73540 | 0.839502 | 1.53E-57 | -1.69E-46 |
| MS.gene05329 | MS.gene73540 | 0.813393 | 2.62E-51 | -1.69E-46 |
| MS.gene053875 | MS.gene73540 | 0.823455 | 1.37E-53 | -1.69E-46 |
| MS.gene054174 | MS.gene73540 | 0.841852 | 3.69E-58 | -1.69E-46 |
| MS.gene054175 | MS.gene73540 | 0.847482 | 1.12E-59 | -1.69E-46 |
| MS.gene05435 | MS.gene73540 | 0.80554 | 1.27E-49 | -1.69E-46 |
| MS.gene054484 | MS.gene73540 | 0.842907 | 1.94E-58 | -1.69E-46 |
| MS.gene055017 | MS.gene73540 | 0.806326 | 8.68E-50 | -1.69E-46 |
| MS.gene055056 | MS.gene73540 | 0.805106 | 1.57E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene73540 | 0.813819 | 2.11E-51 | -1.69E-46 |
| MS.gene05531 | MS.gene73540 | 0.807012 | 6.22E-50 | -1.69E-46 |
| MS.gene055952 | MS.gene73540 | 0.827997 | 1.15E-54 | -1.69E-46 |
| MS.gene05762 | MS.gene73540 | 0.817457 | 3.27E-52 | -1.69E-46 |
| MS.gene058515 | MS.gene73540 | 0.813154 | 2.96E-51 | -1.69E-46 |
| MS.gene058580 | MS.gene73540 | 0.823773 | 1.16E-53 | -1.69E-46 |
| MS.gene059276 | MS.gene73540 | 0.808684 | 2.74E-50 | -1.69E-46 |
| MS.gene059458 | MS.gene73540 | 0.816592 | 5.11E-52 | -1.69E-46 |
| MS.gene059460 | MS.gene73540 | 0.802968 | 4.36E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene73540 | 0.805278 | 1.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATTCTTGCTTTGAAAT+TGG | 0.243153 | 4.1:+59653770 | MS.gene73540:CDS |
| CAACAATCATATCGCGTAAT+AGG | 0.245345 | 4.1:-59653228 | None:intergenic |
| TTGATGAGGGTGTTGATAAA+TGG | 0.296269 | 4.1:+59653003 | MS.gene73540:CDS |
| CATTGTAAGGAATGGGATTA+AGG | 0.322718 | 4.1:-59653536 | None:intergenic |
| GTTGTAGTTGCATGTTATCT+TGG | 0.339369 | 4.1:+59652978 | MS.gene73540:intron |
| TTGAAATTGGTTCCACCTCT+CGG | 0.367496 | 4.1:+59653783 | MS.gene73540:CDS |
| TGCAGCCCTTTATGAGGTTC+TGG | 0.369641 | 4.1:+59653479 | MS.gene73540:CDS |
| CATATCAAGCAATATCTTGC+AGG | 0.382531 | 4.1:-59653269 | None:intergenic |
| TTCGCAACCTCGAAAATCAT+AGG | 0.382861 | 4.1:-59653432 | None:intergenic |
| TGAAGTTGATGAAGAGGATT+TGG | 0.383942 | 4.1:+59653847 | MS.gene73540:CDS |
| CTGCAAGATATTGCTTGATA+TGG | 0.404489 | 4.1:+59653270 | MS.gene73540:CDS |
| GCCAGTCTATATGATGATTC+TGG | 0.413506 | 4.1:+59653680 | MS.gene73540:CDS |
| TAGGTACAAAGGTAGAAAAT+TGG | 0.419602 | 4.1:-59653034 | None:intergenic |
| GGATACAGTGACGATGCTTC+AGG | 0.423628 | 4.1:-59653381 | None:intergenic |
| TGGTGGTGCAGCCCTTTATG+AGG | 0.438843 | 4.1:+59653473 | MS.gene73540:CDS |
| CCATCATAGTAAGGTTCATC+TGG | 0.441047 | 4.1:-59653728 | None:intergenic |
| TGAAATTGGTTCCACCTCTC+GGG | 0.444138 | 4.1:+59653784 | MS.gene73540:CDS |
| GATGAAGAGGATTTGGCTCT+TGG | 0.445037 | 4.1:+59653854 | MS.gene73540:CDS |
| CCACCTGCATTGTAAGGAAT+GGG | 0.447145 | 4.1:-59653543 | None:intergenic |
| GTTGTGGGTTGTCATTCATC+AGG | 0.448077 | 4.1:+59652164 | MS.gene73540:CDS |
| GTGAGAGGGTGTCAAGGTCT+AGG | 0.454815 | 4.1:+59653876 | MS.gene73540:CDS |
| TCCATGTCGTGATGGAGTTG+TGG | 0.454873 | 4.1:+59652148 | MS.gene73540:CDS |
| AACGTCCAGAACCTCATAAA+GGG | 0.467063 | 4.1:-59653484 | None:intergenic |
| AAACGTCCAGAACCTCATAA+AGG | 0.469318 | 4.1:-59653485 | None:intergenic |
| AGTTCGCCACCTGCATTGTA+AGG | 0.472491 | 4.1:-59653549 | None:intergenic |
| TCTTGACCACCATCATAGTA+AGG | 0.476218 | 4.1:-59653737 | None:intergenic |
| AAGGAAGATATCTAATCTGT+TGG | 0.480449 | 4.1:+59653823 | MS.gene73540:CDS |
| ATTTAGGCTGCGTGTTAGTG+TGG | 0.494991 | 4.1:+59653180 | MS.gene73540:CDS |
| CCATGTCGTGATGGAGTTGT+GGG | 0.496605 | 4.1:+59652149 | MS.gene73540:CDS |
| CTCTTGGTGAGAGGGTGTCA+AGG | 0.496785 | 4.1:+59653870 | MS.gene73540:CDS |
| GCCACCTGCATTGTAAGGAA+TGG | 0.503136 | 4.1:-59653544 | None:intergenic |
| TTTAGGCTGCGTGTTAGTGT+GGG | 0.504622 | 4.1:+59653181 | MS.gene73540:CDS |
| GGGTTGATGTTGGTGACAAA+AGG | 0.504959 | 4.1:+59653804 | MS.gene73540:CDS |
| TCAAAGCAAGAATTATCAAA+CGG | 0.509048 | 4.1:-59653764 | None:intergenic |
| AATCCCATTCCTTACAATGC+AGG | 0.514053 | 4.1:+59653540 | MS.gene73540:CDS |
| TTCTACCTTTGTACCTAGGT+GGG | 0.517159 | 4.1:+59653040 | MS.gene73540:CDS |
| ATCATATCGCGTAATAGGAA+TGG | 0.524889 | 4.1:-59653223 | None:intergenic |
| GGATTTGGCTCTTGGTGAGA+GGG | 0.532687 | 4.1:+59653862 | MS.gene73540:CDS |
| TCCACCTCTCGGGTTGATGT+TGG | 0.541025 | 4.1:+59653794 | MS.gene73540:CDS |
| CAATGCAGGTGGCGAACTTG+AGG | 0.549588 | 4.1:+59653554 | MS.gene73540:CDS |
| ATGTTATCTTGGTATTGATG+AGG | 0.552537 | 4.1:+59652989 | MS.gene73540:CDS |
| TCATAAAGGGCTGCACCACC+AGG | 0.554701 | 4.1:-59653471 | None:intergenic |
| TGTTATCTTGGTATTGATGA+GGG | 0.557267 | 4.1:+59652990 | MS.gene73540:CDS |
| ACCAGAATCATCATATAGAC+TGG | 0.558397 | 4.1:-59653681 | None:intergenic |
| TTAGGCTGCGTGTTAGTGTG+GGG | 0.562852 | 4.1:+59653182 | MS.gene73540:CDS |
| AGGATTTGGCTCTTGGTGAG+AGG | 0.564521 | 4.1:+59653861 | MS.gene73540:CDS |
| TTTCTACCTTTGTACCTAGG+TGG | 0.571437 | 4.1:+59653039 | MS.gene73540:CDS |
| TAGGCTGCGTGTTAGTGTGG+GGG | 0.580638 | 4.1:+59653183 | MS.gene73540:CDS |
| GTCACTGTATCCCTCAGAGA+TGG | 0.588319 | 4.1:+59653392 | MS.gene73540:CDS |
| AGCAATATCTTGCAGGTCTG+CGG | 0.588592 | 4.1:-59653262 | None:intergenic |
| CCAGATGAACCTTACTATGA+TGG | 0.589607 | 4.1:+59653728 | MS.gene73540:CDS |
| ACCAACATCAACCCGAGAGG+TGG | 0.591618 | 4.1:-59653795 | None:intergenic |
| AACCTCGAAAATCATAGGAT+CGG | 0.592205 | 4.1:-59653427 | None:intergenic |
| GTTGGATGAAGTTGATGAAG+AGG | 0.594050 | 4.1:+59653841 | MS.gene73540:CDS |
| ATCATATAGACTGGCCACAA+AGG | 0.600269 | 4.1:-59653672 | None:intergenic |
| AACAACAAATCCATCTCTGA+GGG | 0.612454 | 4.1:-59653402 | None:intergenic |
| CCCATTCCTTACAATGCAGG+TGG | 0.623822 | 4.1:+59653543 | MS.gene73540:CDS |
| CCCACAACTCCATCACGACA+TGG | 0.638849 | 4.1:-59652149 | None:intergenic |
| AAACAACAAATCCATCTCTG+AGG | 0.645113 | 4.1:-59653403 | None:intergenic |
| TATTACCCACCTAGGTACAA+AGG | 0.646497 | 4.1:-59653045 | None:intergenic |
| GATTGACTTCCATGTCGTGA+TGG | 0.659020 | 4.1:+59652140 | MS.gene73540:CDS |
| GATGTTAGTATTACCCACCT+AGG | 0.665610 | 4.1:-59653053 | None:intergenic |
| GATGAACCTTACTATGATGG+TGG | 0.676159 | 4.1:+59653731 | MS.gene73540:CDS |
| GTCACCAACATCAACCCGAG+AGG | 0.704570 | 4.1:-59653798 | None:intergenic |
| AAATGTGGTGATTCACCTGG+TGG | 0.705340 | 4.1:+59653456 | MS.gene73540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATGATGTTTTATATTA+TGG | + | chr4.1:59653116-59653135 | MS.gene73540:intron | 15.0% |
| !!! | TTAAATATTGATTAATGTCT+AGG | + | chr4.1:59652862-59652881 | MS.gene73540:intron | 15.0% |
| !!! | TTCAATTGTTTTTTAGATTT+AGG | + | chr4.1:59653164-59653183 | MS.gene73540:intron | 15.0% |
| !!! | TTTATTGATTTACTTGATTT+GGG | + | chr4.1:59652200-59652219 | MS.gene73540:intron | 15.0% |
| !!! | TTTTATTGATTTACTTGATT+TGG | + | chr4.1:59652199-59652218 | MS.gene73540:intron | 15.0% |
| !! | AAAAATGCAAATATATGCAT+GGG | - | chr4.1:59652821-59652840 | None:intergenic | 20.0% |
| !! | GCTATAAATAGGAAAATAAA+TGG | - | chr4.1:59652759-59652778 | None:intergenic | 20.0% |
| !!! | ACAAAATAAGAAGCATTTAA+TGG | - | chr4.1:59652381-59652400 | None:intergenic | 20.0% |
| !!! | TACATTGTTTTGATTATTGT+TGG | + | chr4.1:59653617-59653636 | MS.gene73540:intron | 20.0% |
| !!! | TTTGATTATTGTTGGTATTT+TGG | + | chr4.1:59653625-59653644 | MS.gene73540:intron | 20.0% |
| ! | AAAATGCAAATATATGCATG+GGG | - | chr4.1:59652820-59652839 | None:intergenic | 25.0% |
| ! | AAATCAGCAAAACTGATAAT+AGG | - | chr4.1:59652930-59652949 | None:intergenic | 25.0% |
| ! | CAAAAATGCAAATATATGCA+TGG | - | chr4.1:59652822-59652841 | None:intergenic | 25.0% |
| ! | TCAAAGCAAGAATTATCAAA+CGG | - | chr4.1:59653767-59653786 | None:intergenic | 25.0% |
| !! | CATGTATGTTTTCTTCTTTT+GGG | + | chr4.1:59652733-59652752 | MS.gene73540:intron | 25.0% |
| !! | TCATGTATGTTTTCTTCTTT+TGG | + | chr4.1:59652732-59652751 | MS.gene73540:intron | 25.0% |
| !!! | AATAAGAAGCATTTAATGGA+AGG | - | chr4.1:59652377-59652396 | None:intergenic | 25.0% |
| !!! | CATAGCTTTATACTACATAA+AGG | - | chr4.1:59652504-59652523 | None:intergenic | 25.0% |
| !!! | GATAATTCTTGCTTTGAAAT+TGG | + | chr4.1:59653770-59653789 | MS.gene73540:CDS | 25.0% |
| !!! | TAATGTTACCTTTGATTTGT+AGG | + | chr4.1:59653331-59653350 | MS.gene73540:intron | 25.0% |
| !!! | TATTATCAGTTTTGCTGATT+TGG | + | chr4.1:59652929-59652948 | MS.gene73540:intron | 25.0% |
| !!! | TTGTACTTTTTGTTTCCTAT+TGG | + | chr4.1:59652402-59652421 | MS.gene73540:intron | 25.0% |
| AAATGCAAATATATGCATGG+GGG | - | chr4.1:59652819-59652838 | None:intergenic | 30.0% | |
| AACAGAAAAATGTAACGCAT+GGG | - | chr4.1:59652315-59652334 | None:intergenic | 30.0% | |
| AAGCATTTAATGGAAGGATT+TGG | - | chr4.1:59652371-59652390 | None:intergenic | 30.0% | |
| AAGGAAGATATCTAATCTGT+TGG | + | chr4.1:59653823-59653842 | MS.gene73540:CDS | 30.0% | |
| ACAATGATCCTACAAATCAA+AGG | - | chr4.1:59653342-59653361 | None:intergenic | 30.0% | |
| ACTAACAAAAAAGGATATGC+AGG | - | chr4.1:59652532-59652551 | None:intergenic | 30.0% | |
| ATGTGAATATGTTGTCTGAA+AGG | + | chr4.1:59652275-59652294 | MS.gene73540:intron | 30.0% | |
| GCTTCAGGCTATAAAAAAAA+AGG | - | chr4.1:59653369-59653388 | None:intergenic | 30.0% | |
| TAGGTACAAAGGTAGAAAAT+TGG | - | chr4.1:59653037-59653056 | None:intergenic | 30.0% | |
| TCCTATTTATAGCCATTCAT+GGG | + | chr4.1:59652766-59652785 | MS.gene73540:intron | 30.0% | |
| TGTGAATATGTTGTCTGAAA+GGG | + | chr4.1:59652276-59652295 | MS.gene73540:intron | 30.0% | |
| TTCCTATTTATAGCCATTCA+TGG | + | chr4.1:59652765-59652784 | MS.gene73540:intron | 30.0% | |
| ! | AATTTTCTACCTTTGTACCT+AGG | + | chr4.1:59653036-59653055 | MS.gene73540:CDS | 30.0% |
| ! | TTTCATTTTGGATTCCTTTG+TGG | + | chr4.1:59653658-59653677 | MS.gene73540:CDS | 30.0% |
| !! | ATGTTATCTTGGTATTGATG+AGG | + | chr4.1:59652989-59653008 | MS.gene73540:CDS | 30.0% |
| !! | TGTTATCTTGGTATTGATGA+GGG | + | chr4.1:59652990-59653009 | MS.gene73540:CDS | 30.0% |
| AAAAAATGTGGTGATTCACC+TGG | + | chr4.1:59653453-59653472 | MS.gene73540:CDS | 35.0% | |
| AAACAACAAATCCATCTCTG+AGG | - | chr4.1:59653406-59653425 | None:intergenic | 35.0% | |
| AACAACAAATCCATCTCTGA+GGG | - | chr4.1:59653405-59653424 | None:intergenic | 35.0% | |
| AACCTCGAAAATCATAGGAT+CGG | - | chr4.1:59653430-59653449 | None:intergenic | 35.0% | |
| AATGCAAATATATGCATGGG+GGG | - | chr4.1:59652818-59652837 | None:intergenic | 35.0% | |
| ACCAGAATCATCATATAGAC+TGG | - | chr4.1:59653684-59653703 | None:intergenic | 35.0% | |
| ACCCATGAATGGCTATAAAT+AGG | - | chr4.1:59652770-59652789 | None:intergenic | 35.0% | |
| AGCAAAAAACTGCACATAGA+TGG | - | chr4.1:59652470-59652489 | None:intergenic | 35.0% | |
| ATCATATCGCGTAATAGGAA+TGG | - | chr4.1:59653226-59653245 | None:intergenic | 35.0% | |
| ATGAAATGAACACCCATGAA+TGG | - | chr4.1:59652781-59652800 | None:intergenic | 35.0% | |
| CAACAATCATATCGCGTAAT+AGG | - | chr4.1:59653231-59653250 | None:intergenic | 35.0% | |
| CAACAGAAAAATGTAACGCA+TGG | - | chr4.1:59652316-59652335 | None:intergenic | 35.0% | |
| CACAAATAAAGAGTCACATG+AGG | - | chr4.1:59652644-59652663 | None:intergenic | 35.0% | |
| CATATCAAGCAATATCTTGC+AGG | - | chr4.1:59653272-59653291 | None:intergenic | 35.0% | |
| CATTGTAAGGAATGGGATTA+AGG | - | chr4.1:59653539-59653558 | None:intergenic | 35.0% | |
| CTGCAAGATATTGCTTGATA+TGG | + | chr4.1:59653270-59653289 | MS.gene73540:CDS | 35.0% | |
| GCAAAAAACTGCACATAGAT+GGG | - | chr4.1:59652469-59652488 | None:intergenic | 35.0% | |
| GTTAAAGTGAAGACAATGCA+AGG | - | chr4.1:59653099-59653118 | None:intergenic | 35.0% | |
| GTTGTAGTTGCATGTTATCT+TGG | + | chr4.1:59652978-59652997 | MS.gene73540:intron | 35.0% | |
| ! | CGTTACATTTTTCTGTTGCA+CGG | + | chr4.1:59652318-59652337 | MS.gene73540:intron | 35.0% |
| ! | GGTTTTGCAGGATTTCATTT+TGG | + | chr4.1:59653646-59653665 | MS.gene73540:intron | 35.0% |
| !! | CTAGGAGGTACTAACAAAAA+AGG | - | chr4.1:59652541-59652560 | None:intergenic | 35.0% |
| !! | TGAAGTTGATGAAGAGGATT+TGG | + | chr4.1:59653847-59653866 | MS.gene73540:CDS | 35.0% |
| !! | TTGATGAGGGTGTTGATAAA+TGG | + | chr4.1:59653003-59653022 | MS.gene73540:CDS | 35.0% |
| !!! | CTTTTTTGTTAGTACCTCCT+AGG | + | chr4.1:59652539-59652558 | MS.gene73540:intron | 35.0% |
| !!! | TGTTGGTATTTTGGTTTTGC+AGG | + | chr4.1:59653634-59653653 | MS.gene73540:intron | 35.0% |
| AAACGTCCAGAACCTCATAA+AGG | - | chr4.1:59653488-59653507 | None:intergenic | 40.0% | |
| AACGTCCAGAACCTCATAAA+GGG | - | chr4.1:59653487-59653506 | None:intergenic | 40.0% | |
| AATCCCATTCCTTACAATGC+AGG | + | chr4.1:59653540-59653559 | MS.gene73540:CDS | 40.0% | |
| ATAAAGAGTCACATGAGGTC+AGG | - | chr4.1:59652639-59652658 | None:intergenic | 40.0% | |
| ATACTGCTGCAGGTAAAATG+TGG | - | chr4.1:59652428-59652447 | None:intergenic | 40.0% | |
| ATGCAAATATATGCATGGGG+GGG | - | chr4.1:59652817-59652836 | None:intergenic | 40.0% | |
| CAGGTCAAAAATAACCTAGG+AGG | - | chr4.1:59652556-59652575 | None:intergenic | 40.0% | |
| CCAGATGAACCTTACTATGA+TGG | + | chr4.1:59653728-59653747 | MS.gene73540:CDS | 40.0% | |
| CCATCATAGTAAGGTTCATC+TGG | - | chr4.1:59653731-59653750 | None:intergenic | 40.0% | |
| GATGAACCTTACTATGATGG+TGG | + | chr4.1:59653731-59653750 | MS.gene73540:CDS | 40.0% | |
| GATGTTAGTATTACCCACCT+AGG | - | chr4.1:59653056-59653075 | None:intergenic | 40.0% | |
| GCCAGTCTATATGATGATTC+TGG | + | chr4.1:59653680-59653699 | MS.gene73540:CDS | 40.0% | |
| GGACAGGTCAAAAATAACCT+AGG | - | chr4.1:59652559-59652578 | None:intergenic | 40.0% | |
| GTTTCAAATCTGCAGTGTAC+AGG | - | chr4.1:59652345-59652364 | None:intergenic | 40.0% | |
| TATTACCCACCTAGGTACAA+AGG | - | chr4.1:59653048-59653067 | None:intergenic | 40.0% | |
| TCTTGACCACCATCATAGTA+AGG | - | chr4.1:59653740-59653759 | None:intergenic | 40.0% | |
| TGTCCCACTTGTAGATCTTA+GGG | - | chr4.1:59652580-59652599 | None:intergenic | 40.0% | |
| TGTCCCTAAGATCTACAAGT+GGG | + | chr4.1:59652574-59652593 | MS.gene73540:intron | 40.0% | |
| TTCGAGGTTGCGAAAAAATG+TGG | + | chr4.1:59653441-59653460 | MS.gene73540:CDS | 40.0% | |
| TTCGCAACCTCGAAAATCAT+AGG | - | chr4.1:59653435-59653454 | None:intergenic | 40.0% | |
| TTCTACCTTTGTACCTAGGT+GGG | + | chr4.1:59653040-59653059 | MS.gene73540:CDS | 40.0% | |
| TTGGTCAAATGCAAGGATGA+TGG | + | chr4.1:59652948-59652967 | MS.gene73540:intron | 40.0% | |
| TTGTCCCACTTGTAGATCTT+AGG | - | chr4.1:59652581-59652600 | None:intergenic | 40.0% | |
| TTTCCTTGTGATCTGCATCA+TGG | + | chr4.1:59652247-59652266 | MS.gene73540:intron | 40.0% | |
| TTTCTACCTTTGTACCTAGG+TGG | + | chr4.1:59653039-59653058 | MS.gene73540:CDS | 40.0% | |
| ! | ACATTTTACCTGCAGCAGTA+TGG | + | chr4.1:59652427-59652446 | MS.gene73540:intron | 40.0% |
| ! | ATCATATAGACTGGCCACAA+AGG | - | chr4.1:59653675-59653694 | None:intergenic | 40.0% |
| ! | TCTAGGATGTCTGAGATTCT+TGG | + | chr4.1:59652879-59652898 | MS.gene73540:intron | 40.0% |
| ! | TTGAAATTGGTTCCACCTCT+CGG | + | chr4.1:59653783-59653802 | MS.gene73540:CDS | 40.0% |
| !! | GTTGGATGAAGTTGATGAAG+AGG | + | chr4.1:59653841-59653860 | MS.gene73540:CDS | 40.0% |
| !! | TGCTGATTTGGTCAAATGCA+AGG | + | chr4.1:59652941-59652960 | MS.gene73540:intron | 40.0% |
| AAATGTGGTGATTCACCTGG+TGG | + | chr4.1:59653456-59653475 | MS.gene73540:CDS | 45.0% | |
| AGCAATATCTTGCAGGTCTG+CGG | - | chr4.1:59653265-59653284 | None:intergenic | 45.0% | |
| ATGCCATGATGCAGATCACA+AGG | - | chr4.1:59652253-59652272 | None:intergenic | 45.0% | |
| ATTTAGGCTGCGTGTTAGTG+TGG | + | chr4.1:59653180-59653199 | MS.gene73540:CDS | 45.0% | |
| CACTTGTAGATCTTAGGGAC+AGG | - | chr4.1:59652575-59652594 | None:intergenic | 45.0% | |
| CCACCTGCATTGTAAGGAAT+GGG | - | chr4.1:59653546-59653565 | None:intergenic | 45.0% | |
| CTGTCCCTAAGATCTACAAG+TGG | + | chr4.1:59652573-59652592 | MS.gene73540:intron | 45.0% | |
| GCAGGTAAAATGTGGCCAAT+AGG | - | chr4.1:59652420-59652439 | None:intergenic | 45.0% | |
| TTTAGGCTGCGTGTTAGTGT+GGG | + | chr4.1:59653181-59653200 | MS.gene73540:CDS | 45.0% | |
| ! | GATTGACTTCCATGTCGTGA+TGG | + | chr4.1:59652140-59652159 | MS.gene73540:CDS | 45.0% |
| ! | GTTGTGGGTTGTCATTCATC+AGG | + | chr4.1:59652164-59652183 | MS.gene73540:CDS | 45.0% |
| ! | TGAAATTGGTTCCACCTCTC+GGG | + | chr4.1:59653784-59653803 | MS.gene73540:CDS | 45.0% |
| ! | TGCCGATCCTATGATTTTCG+AGG | + | chr4.1:59653425-59653444 | MS.gene73540:CDS | 45.0% |
| !! | GATGAAGAGGATTTGGCTCT+TGG | + | chr4.1:59653854-59653873 | MS.gene73540:CDS | 45.0% |
| !! | GGGTTGATGTTGGTGACAAA+AGG | + | chr4.1:59653804-59653823 | MS.gene73540:CDS | 45.0% |
| AGTTCGCCACCTGCATTGTA+AGG | - | chr4.1:59653552-59653571 | None:intergenic | 50.0% | |
| ATATGCATGGGGGGGTGATT+AGG | - | chr4.1:59652809-59652828 | None:intergenic | 50.0% | |
| CCCATTCCTTACAATGCAGG+TGG | + | chr4.1:59653543-59653562 | MS.gene73540:CDS | 50.0% | |
| CTAAGCTACCATACTGCTGC+AGG | - | chr4.1:59652438-59652457 | None:intergenic | 50.0% | |
| GCCACCTGCATTGTAAGGAA+TGG | - | chr4.1:59653547-59653566 | None:intergenic | 50.0% | |
| GGATACAGTGACGATGCTTC+AGG | - | chr4.1:59653384-59653403 | None:intergenic | 50.0% | |
| GTCACTGTATCCCTCAGAGA+TGG | + | chr4.1:59653392-59653411 | MS.gene73540:CDS | 50.0% | |
| TGCAGCCCTTTATGAGGTTC+TGG | + | chr4.1:59653479-59653498 | MS.gene73540:CDS | 50.0% | |
| TTAGGCTGCGTGTTAGTGTG+GGG | + | chr4.1:59653182-59653201 | MS.gene73540:CDS | 50.0% | |
| ! | CCATGTCGTGATGGAGTTGT+GGG | + | chr4.1:59652149-59652168 | MS.gene73540:CDS | 50.0% |
| ! | TCCATGTCGTGATGGAGTTG+TGG | + | chr4.1:59652148-59652167 | MS.gene73540:CDS | 50.0% |
| !! | AGGATTTGGCTCTTGGTGAG+AGG | + | chr4.1:59653861-59653880 | MS.gene73540:CDS | 50.0% |
| !! | GGATTTGGCTCTTGGTGAGA+GGG | + | chr4.1:59653862-59653881 | MS.gene73540:CDS | 50.0% |
| ACCAACATCAACCCGAGAGG+TGG | - | chr4.1:59653798-59653817 | None:intergenic | 55.0% | |
| CAATGCAGGTGGCGAACTTG+AGG | + | chr4.1:59653554-59653573 | MS.gene73540:CDS | 55.0% | |
| CCCACAACTCCATCACGACA+TGG | - | chr4.1:59652152-59652171 | None:intergenic | 55.0% | |
| GTCACCAACATCAACCCGAG+AGG | - | chr4.1:59653801-59653820 | None:intergenic | 55.0% | |
| TAGGCTGCGTGTTAGTGTGG+GGG | + | chr4.1:59653183-59653202 | MS.gene73540:CDS | 55.0% | |
| TCATAAAGGGCTGCACCACC+AGG | - | chr4.1:59653474-59653493 | None:intergenic | 55.0% | |
| TGTGGGGGATTTCGACTCTG+AGG | + | chr4.1:59653198-59653217 | MS.gene73540:CDS | 55.0% | |
| ! | TGGTGGTGCAGCCCTTTATG+AGG | + | chr4.1:59653473-59653492 | MS.gene73540:CDS | 55.0% |
| !! | CTCTTGGTGAGAGGGTGTCA+AGG | + | chr4.1:59653870-59653889 | MS.gene73540:CDS | 55.0% |
| !! | GTGAGAGGGTGTCAAGGTCT+AGG | + | chr4.1:59653876-59653895 | MS.gene73540:CDS | 55.0% |
| !! | TCCACCTCTCGGGTTGATGT+TGG | + | chr4.1:59653794-59653813 | MS.gene73540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 59652138 | 59653907 | 59652138 | ID=MS.gene73540 |
| chr4.1 | mRNA | 59652138 | 59653907 | 59652138 | ID=MS.gene73540.t1;Parent=MS.gene73540 |
| chr4.1 | exon | 59652138 | 59652185 | 59652138 | ID=MS.gene73540.t1.exon1;Parent=MS.gene73540.t1 |
| chr4.1 | CDS | 59652138 | 59652185 | 59652138 | ID=cds.MS.gene73540.t1;Parent=MS.gene73540.t1 |
| chr4.1 | exon | 59652985 | 59653061 | 59652985 | ID=MS.gene73540.t1.exon2;Parent=MS.gene73540.t1 |
| chr4.1 | CDS | 59652985 | 59653061 | 59652985 | ID=cds.MS.gene73540.t1;Parent=MS.gene73540.t1 |
| chr4.1 | exon | 59653180 | 59653291 | 59653180 | ID=MS.gene73540.t1.exon3;Parent=MS.gene73540.t1 |
| chr4.1 | CDS | 59653180 | 59653291 | 59653180 | ID=cds.MS.gene73540.t1;Parent=MS.gene73540.t1 |
| chr4.1 | exon | 59653381 | 59653575 | 59653381 | ID=MS.gene73540.t1.exon4;Parent=MS.gene73540.t1 |
| chr4.1 | CDS | 59653381 | 59653575 | 59653381 | ID=cds.MS.gene73540.t1;Parent=MS.gene73540.t1 |
| chr4.1 | exon | 59653656 | 59653907 | 59653656 | ID=MS.gene73540.t1.exon5;Parent=MS.gene73540.t1 |
| chr4.1 | CDS | 59653656 | 59653907 | 59653656 | ID=cds.MS.gene73540.t1;Parent=MS.gene73540.t1 |
| Gene Sequence |
| Protein sequence |
