Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76750.t1 | XP_003605354.2 | 77.8 | 495 | 40 | 3 | 1 | 494 | 1 | 426 | 3.80E-198 | 701 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76750.t1 | P93030 | 44.0 | 100 | 36 | 2 | 128 | 214 | 15 | 107 | 2.7e-19 | 98.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76750.t1 | G7JJK5 | 77.8 | 495 | 40 | 3 | 1 | 494 | 1 | 426 | 2.8e-198 | 701.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene76750 | 0.848238 | 6.96E-60 | -1.69E-46 |
| MS.gene049343 | MS.gene76750 | 0.825732 | 3.99E-54 | -1.69E-46 |
| MS.gene049968 | MS.gene76750 | 0.802535 | 5.36E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene76750 | 0.817943 | 2.54E-52 | -1.69E-46 |
| MS.gene050156 | MS.gene76750 | 0.820589 | 6.33E-53 | -1.69E-46 |
| MS.gene050273 | MS.gene76750 | 0.800825 | 1.20E-48 | -1.69E-46 |
| MS.gene050287 | MS.gene76750 | -0.811199 | 7.89E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene76750 | 0.837316 | 5.58E-57 | -1.69E-46 |
| MS.gene050799 | MS.gene76750 | 0.830873 | 2.30E-55 | -1.69E-46 |
| MS.gene050826 | MS.gene76750 | 0.802347 | 5.86E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene76750 | 0.845072 | 5.10E-59 | -1.69E-46 |
| MS.gene051181 | MS.gene76750 | 0.829856 | 4.07E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene76750 | 0.810273 | 1.25E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene76750 | 0.817128 | 3.87E-52 | -1.69E-46 |
| MS.gene051594 | MS.gene76750 | 0.805159 | 1.53E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene76750 | 0.821976 | 3.03E-53 | -1.69E-46 |
| MS.gene051924 | MS.gene76750 | -0.813373 | 2.64E-51 | -1.69E-46 |
| MS.gene051926 | MS.gene76750 | -0.822187 | 2.71E-53 | -1.69E-46 |
| MS.gene052108 | MS.gene76750 | 0.816374 | 5.71E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene76750 | 0.84565 | 3.56E-59 | -1.69E-46 |
| MS.gene052333 | MS.gene76750 | 0.82714 | 1.84E-54 | -1.69E-46 |
| MS.gene052389 | MS.gene76750 | 0.804668 | 1.93E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene76750 | 0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene76750 | 0.843333 | 1.49E-58 | -1.69E-46 |
| MS.gene052534 | MS.gene76750 | 0.815375 | 9.55E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene76750 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene76750 | 0.82442 | 8.15E-54 | -1.69E-46 |
| MS.gene052586 | MS.gene76750 | 0.820603 | 6.29E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene76750 | 0.825148 | 5.49E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene76750 | 0.820113 | 8.14E-53 | -1.69E-46 |
| MS.gene053054 | MS.gene76750 | -0.801683 | 8.02E-49 | -1.69E-46 |
| MS.gene053145 | MS.gene76750 | 0.822839 | 1.91E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene76750 | 0.818401 | 2.00E-52 | -1.69E-46 |
| MS.gene053201 | MS.gene76750 | 0.801564 | 8.49E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene76750 | 0.818949 | 1.50E-52 | -1.69E-46 |
| MS.gene053272 | MS.gene76750 | -0.802211 | 6.25E-49 | -1.69E-46 |
| MS.gene053883 | MS.gene76750 | 0.80323 | 3.85E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene76750 | 0.813154 | 2.95E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene76750 | 0.85213 | 5.65E-61 | -1.69E-46 |
| MS.gene05423 | MS.gene76750 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene76750 | -0.837896 | 3.97E-57 | -1.69E-46 |
| MS.gene054405 | MS.gene76750 | 0.837364 | 5.43E-57 | -1.69E-46 |
| MS.gene054467 | MS.gene76750 | 0.803285 | 3.75E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene76750 | 0.804231 | 2.39E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene76750 | 0.804882 | 1.75E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene76750 | 0.811644 | 6.31E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene76750 | 0.810858 | 9.35E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene76750 | 0.835309 | 1.81E-56 | -1.69E-46 |
| MS.gene054991 | MS.gene76750 | 0.807909 | 4.01E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene76750 | 0.828216 | 1.02E-54 | -1.69E-46 |
| MS.gene055228 | MS.gene76750 | 0.816323 | 5.87E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene76750 | 0.802087 | 6.62E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene76750 | 0.803811 | 2.92E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene76750 | 0.88028 | 6.25E-70 | -1.69E-46 |
| MS.gene05604 | MS.gene76750 | 0.803135 | 4.03E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene76750 | 0.832636 | 8.44E-56 | -1.69E-46 |
| MS.gene056173 | MS.gene76750 | 0.820335 | 7.24E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene76750 | 0.826984 | 2.01E-54 | -1.69E-46 |
| MS.gene056272 | MS.gene76750 | 0.821453 | 4.00E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene76750 | 0.836534 | 8.84E-57 | -1.69E-46 |
| MS.gene056373 | MS.gene76750 | 0.832369 | 9.83E-56 | -1.69E-46 |
| MS.gene056498 | MS.gene76750 | 0.804881 | 1.75E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene76750 | 0.814826 | 1.26E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene76750 | 0.817032 | 4.07E-52 | -1.69E-46 |
| MS.gene056776 | MS.gene76750 | 0.807144 | 5.84E-50 | -1.69E-46 |
| MS.gene056779 | MS.gene76750 | 0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene05690 | MS.gene76750 | 0.803854 | 2.86E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene76750 | 0.837224 | 5.90E-57 | -1.69E-46 |
| MS.gene057156 | MS.gene76750 | -0.800285 | 1.55E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene76750 | 0.833078 | 6.56E-56 | -1.69E-46 |
| MS.gene057444 | MS.gene76750 | 0.818529 | 1.87E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene76750 | 0.871518 | 6.43E-67 | -1.69E-46 |
| MS.gene057855 | MS.gene76750 | 0.848107 | 7.57E-60 | -1.69E-46 |
| MS.gene058008 | MS.gene76750 | 0.810522 | 1.11E-50 | -1.69E-46 |
| MS.gene058009 | MS.gene76750 | 0.81274 | 3.64E-51 | -1.69E-46 |
| MS.gene058294 | MS.gene76750 | 0.824302 | 8.69E-54 | -1.69E-46 |
| MS.gene058498 | MS.gene76750 | 0.802574 | 5.26E-49 | -1.69E-46 |
| MS.gene058502 | MS.gene76750 | 0.803228 | 3.85E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene76750 | 0.832523 | 9.00E-56 | -1.69E-46 |
| MS.gene058783 | MS.gene76750 | 0.805758 | 1.14E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene76750 | 0.839077 | 1.97E-57 | -1.69E-46 |
| MS.gene059439 | MS.gene76750 | 0.831786 | 1.37E-55 | -1.69E-46 |
| MS.gene059584 | MS.gene76750 | 0.803163 | 3.97E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene76750 | 0.802236 | 6.17E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene76750 | 0.816131 | 6.48E-52 | -1.69E-46 |
| MS.gene060373 | MS.gene76750 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene060521 | MS.gene76750 | 0.809171 | 2.16E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene76750 | 0.830259 | 3.25E-55 | -1.69E-46 |
| MS.gene060634 | MS.gene76750 | -0.837623 | 4.66E-57 | -1.69E-46 |
| MS.gene060777 | MS.gene76750 | 0.859462 | 4.07E-63 | -1.69E-46 |
| MS.gene060879 | MS.gene76750 | 0.832183 | 1.09E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene76750 | 0.805936 | 1.05E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene76750 | 0.803737 | 3.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76750.t1 | MTR_4g029440 | 94.264 | 401 | 19 | 2 | 1 | 398 | 1 | 400 | 0.0 | 744 |
| MS.gene76750.t1 | MTR_4g029440 | 94.162 | 394 | 19 | 2 | 8 | 398 | 2 | 394 | 0.0 | 730 |
| MS.gene76750.t1 | MTR_2g061230 | 43.678 | 261 | 117 | 7 | 1 | 260 | 1 | 232 | 1.86e-54 | 183 |
| MS.gene76750.t1 | MTR_7g093390 | 34.699 | 366 | 179 | 12 | 55 | 380 | 93 | 438 | 2.70e-47 | 170 |
| MS.gene76750.t1 | MTR_1g054280 | 56.044 | 91 | 38 | 2 | 127 | 216 | 71 | 160 | 3.23e-29 | 116 |
| MS.gene76750.t1 | MTR_1g054260 | 48.000 | 125 | 43 | 5 | 125 | 232 | 77 | 196 | 5.62e-29 | 113 |
| MS.gene76750.t1 | MTR_1g054465 | 45.926 | 135 | 48 | 7 | 125 | 239 | 45 | 174 | 7.87e-28 | 110 |
| MS.gene76750.t1 | MTR_1g054210 | 52.427 | 103 | 45 | 3 | 117 | 218 | 109 | 208 | 8.21e-28 | 111 |
| MS.gene76750.t1 | MTR_2g090330 | 46.667 | 90 | 44 | 1 | 130 | 215 | 28 | 117 | 1.65e-26 | 105 |
| MS.gene76750.t1 | MTR_2g090330 | 46.667 | 90 | 44 | 1 | 130 | 215 | 31 | 120 | 1.16e-24 | 100 |
| MS.gene76750.t1 | MTR_2g090325 | 47.727 | 88 | 38 | 2 | 127 | 214 | 15 | 94 | 3.73e-23 | 97.4 |
| MS.gene76750.t1 | MTR_5g019300 | 45.977 | 87 | 46 | 1 | 132 | 218 | 35 | 120 | 1.26e-22 | 97.1 |
| MS.gene76750.t1 | MTR_1g021895 | 45.055 | 91 | 48 | 2 | 128 | 218 | 27 | 115 | 1.62e-22 | 96.7 |
| MS.gene76750.t1 | MTR_8g465910 | 46.392 | 97 | 42 | 3 | 127 | 215 | 41 | 135 | 2.64e-21 | 93.6 |
| MS.gene76750.t1 | MTR_2g090295 | 40.171 | 117 | 56 | 3 | 105 | 214 | 20 | 129 | 9.35e-21 | 92.0 |
| MS.gene76750.t1 | MTR_2g013550 | 39.091 | 110 | 50 | 3 | 116 | 213 | 11 | 115 | 2.39e-20 | 90.5 |
| MS.gene76750.t1 | MTR_4g088870 | 39.423 | 104 | 54 | 2 | 125 | 219 | 25 | 128 | 3.74e-20 | 89.0 |
| MS.gene76750.t1 | MTR_4g088875 | 36.449 | 107 | 58 | 2 | 123 | 219 | 22 | 128 | 3.46e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76750.t1 | AT2G44410 | 43.462 | 260 | 104 | 8 | 1 | 245 | 10 | 241 | 3.31e-53 | 185 |
| MS.gene76750.t1 | AT3G58030 | 50.365 | 137 | 57 | 6 | 113 | 244 | 114 | 244 | 8.15e-35 | 135 |
| MS.gene76750.t1 | AT3G58030 | 50.365 | 137 | 57 | 6 | 113 | 244 | 114 | 244 | 8.15e-35 | 135 |
| MS.gene76750.t1 | AT3G58030 | 50.365 | 137 | 57 | 6 | 113 | 244 | 114 | 244 | 8.15e-35 | 135 |
| MS.gene76750.t1 | AT3G58030 | 50.365 | 137 | 57 | 6 | 113 | 244 | 114 | 244 | 8.15e-35 | 135 |
| MS.gene76750.t1 | AT1G74990 | 44.860 | 107 | 58 | 1 | 125 | 231 | 10 | 115 | 5.55e-29 | 111 |
| MS.gene76750.t1 | AT2G42030 | 38.272 | 162 | 88 | 3 | 93 | 250 | 100 | 253 | 2.52e-28 | 117 |
| MS.gene76750.t1 | AT1G19310 | 48.276 | 87 | 44 | 1 | 132 | 218 | 21 | 106 | 1.09e-23 | 99.8 |
| MS.gene76750.t1 | AT4G28270 | 46.000 | 100 | 34 | 3 | 128 | 214 | 15 | 107 | 1.19e-22 | 95.9 |
| MS.gene76750.t1 | AT2G23780 | 45.977 | 87 | 46 | 1 | 132 | 218 | 26 | 111 | 1.92e-22 | 96.3 |
| MS.gene76750.t1 | AT2G23780 | 45.977 | 87 | 46 | 1 | 132 | 218 | 26 | 111 | 1.92e-22 | 96.3 |
| MS.gene76750.t1 | AT2G23780 | 45.977 | 87 | 46 | 1 | 132 | 218 | 26 | 111 | 1.92e-22 | 96.3 |
| MS.gene76750.t1 | AT4G27470 | 35.200 | 125 | 64 | 3 | 132 | 243 | 42 | 162 | 5.12e-19 | 86.7 |
| MS.gene76750.t1 | AT4G03510 | 43.956 | 91 | 38 | 4 | 132 | 214 | 46 | 131 | 2.74e-18 | 84.7 |
| MS.gene76750.t1 | AT4G03510 | 43.956 | 91 | 38 | 4 | 132 | 214 | 46 | 131 | 2.74e-18 | 84.7 |
| MS.gene76750.t1 | AT4G03510 | 43.956 | 91 | 38 | 4 | 132 | 214 | 46 | 131 | 2.74e-18 | 84.7 |
| MS.gene76750.t1 | AT4G03510 | 43.956 | 91 | 38 | 4 | 132 | 214 | 46 | 131 | 2.74e-18 | 84.7 |
Find 115 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGGTATTATTCCAATTTA+TGG | 0.104536 | 4.1:+70644428 | MS.gene76750:CDS |
| CCATTTCCATGTCCATAAAT+TGG | 0.194274 | 4.1:-70644440 | None:intergenic |
| TTATCAACATTCCTACTTAA+AGG | 0.205288 | 4.1:-70645007 | None:intergenic |
| CTCTCAGGTGTGGTACTATT+AGG | 0.243365 | 4.1:-70644653 | None:intergenic |
| GTCGATAATGTTGCTGTTAT+AGG | 0.252556 | 4.1:+70646525 | MS.gene76750:CDS |
| CATAACCGAATTGGTGGATT+TGG | 0.278139 | 4.1:+70644608 | MS.gene76750:CDS |
| CTTCTGTGTCTCTGTTAAAT+AGG | 0.287511 | 4.1:+70646499 | MS.gene76750:CDS |
| TCTCAGGTGTGGTACTATTA+GGG | 0.289538 | 4.1:-70644652 | None:intergenic |
| GTTGATAATGTTGCTGTTGC+AGG | 0.300831 | 4.1:+70645022 | MS.gene76750:CDS |
| CTTCTATTGTCCAAAGTATT+CGG | 0.320027 | 4.1:+70644579 | MS.gene76750:CDS |
| CTTTGATTGTAATATTTGTT+TGG | 0.349272 | 4.1:+70644280 | MS.gene76750:CDS |
| TGATTTGAATCAGGAGCCTT+TGG | 0.350787 | 4.1:+70643896 | MS.gene76750:CDS |
| TATGAAACCGCCGAATACTT+TGG | 0.373232 | 4.1:-70644589 | None:intergenic |
| TTCGAGAGCGAGGCAGCGTC+GGG | 0.374026 | 4.1:+70644025 | MS.gene76750:CDS |
| ATTCAGATAACCAATGTTAC+AGG | 0.375175 | 4.1:+70644071 | MS.gene76750:CDS |
| TTCTGCTGAAAGATTAGTTC+AGG | 0.376998 | 4.1:+70644814 | MS.gene76750:CDS |
| CGGCGGTTTCATAACCGAAT+TGG | 0.383576 | 4.1:+70644599 | MS.gene76750:CDS |
| CCAATTTATGGACATGGAAA+TGG | 0.384021 | 4.1:+70644440 | MS.gene76750:CDS |
| ACATTCCTTTGCTTTCGAAT+AGG | 0.388726 | 4.1:-70644378 | None:intergenic |
| TATGGAGCTTGATTTGAATC+AGG | 0.400185 | 4.1:+70643887 | None:intergenic |
| CTCTCGAAGTAATTGCTTCA+AGG | 0.402049 | 4.1:-70644010 | None:intergenic |
| GGAGCGGAACGATGCTGATC+AGG | 0.409682 | 4.1:+70644139 | MS.gene76750:CDS |
| GACCATTGATATATGATTCA+AGG | 0.415979 | 4.1:-70644838 | None:intergenic |
| TGAACATGGTGGTTCTCAAC+AGG | 0.416867 | 4.1:+70644721 | MS.gene76750:CDS |
| AGCTGCTGCAGCTACAGAAT+TGG | 0.416919 | 4.1:-70644975 | None:intergenic |
| TGCAGTTTCTCCTGTAACAT+TGG | 0.419434 | 4.1:-70644081 | None:intergenic |
| CTTCTCTTTCTCCTTTAAGT+AGG | 0.422331 | 4.1:+70644996 | MS.gene76750:CDS |
| CTTCTTCTACCGTTTGATGA+AGG | 0.424965 | 4.1:-70646597 | None:intergenic |
| GTGGTTCTCAACAGGTTTCA+AGG | 0.428291 | 4.1:+70644729 | MS.gene76750:CDS |
| ATCTGAATCCGAGAGGAGTT+CGG | 0.434023 | 4.1:-70644056 | None:intergenic |
| GTTACCTCCCCTTTACAAAC+AGG | 0.438464 | 4.1:-70644401 | None:intergenic |
| TTGCTTCAAGGTGTGTGATT+CGG | 0.441946 | 4.1:-70643998 | None:intergenic |
| GTCTGCGTGCGAGACTGAAC+AGG | 0.444476 | 4.1:-70644689 | None:intergenic |
| GGGATGGAAGAGATTGATAA+TGG | 0.448635 | 4.1:+70644230 | MS.gene76750:CDS |
| AGGAATGTCCTGTTTGTAAA+GGG | 0.451056 | 4.1:+70644393 | MS.gene76750:CDS |
| AAATGAACGCACTGATGTAC+TGG | 0.451580 | 4.1:-70643928 | None:intergenic |
| AGTCATTTCGATATTCTTGT+TGG | 0.454214 | 4.1:-70646651 | None:intergenic |
| TGACCACAACATGTCAAAAC+AGG | 0.454953 | 4.1:-70644317 | None:intergenic |
| TATATCAATGGTCACAATAC+AGG | 0.455204 | 4.1:+70644848 | MS.gene76750:CDS |
| TAGAAGAAGAAGATGCTCCT+TGG | 0.455800 | 4.1:-70644562 | None:intergenic |
| TAAAGGGGAGGTAACTGAAT+CGG | 0.458742 | 4.1:+70644409 | MS.gene76750:CDS |
| GGCAAACCATTGTTTCTCTC+AGG | 0.458959 | 4.1:-70644668 | None:intergenic |
| TTCTTCTACCGTTTGATGAA+GGG | 0.463767 | 4.1:-70646596 | None:intergenic |
| CTCTCAACTCTAGGTGCCTT+AGG | 0.467180 | 4.1:-70644518 | None:intergenic |
| TATGTTGGAAGAACTTGAAT+CGG | 0.467329 | 4.1:+70643956 | MS.gene76750:CDS |
| AGAAGAAGAAGATGCTCCTT+GGG | 0.474601 | 4.1:-70644561 | None:intergenic |
| GGTAAAGTGGAGGAGAGTAG+TGG | 0.474653 | 4.1:+70644251 | MS.gene76750:CDS |
| CGGTTTCATAACCGAATTGG+TGG | 0.476371 | 4.1:+70644602 | MS.gene76750:CDS |
| GCTCTCCAAATCCACCAATT+CGG | 0.478712 | 4.1:-70644613 | None:intergenic |
| AACGATGCTGATCAGGATGA+AGG | 0.485394 | 4.1:+70644146 | MS.gene76750:CDS |
| TCAAACGGTAGAAGAAGAAA+TGG | 0.486110 | 4.1:+70646603 | MS.gene76750:CDS |
| GGTTGCCGCCGAACTCCTCT+CGG | 0.492462 | 4.1:+70644048 | MS.gene76750:CDS |
| CTTGACCACGACTCTCTGAC+TGG | 0.492720 | 4.1:-70644937 | None:intergenic |
| AGAGATTGATAATGGTAAAG+TGG | 0.493881 | 4.1:+70644238 | MS.gene76750:CDS |
| CATTTGATAGCAAAAGCTCT+AGG | 0.498838 | 4.1:+70644209 | MS.gene76750:CDS |
| GAGAGTTCCTCCTCGACCTA+AGG | 0.502667 | 4.1:+70644502 | MS.gene76750:CDS |
| AAGGAATGTCCTGTTTGTAA+AGG | 0.503450 | 4.1:+70644392 | MS.gene76750:CDS |
| AACAGCATTAAATTCTGCAA+TGG | 0.508273 | 4.1:+70644790 | MS.gene76750:CDS |
| CTTCGAGAGCGAGGCAGCGT+CGG | 0.509799 | 4.1:+70644024 | MS.gene76750:CDS |
| GAAGAAGAAGATTGCGATGA+CGG | 0.511269 | 4.1:+70645158 | MS.gene76750:CDS |
| CTGTTAGACCCTTCATCAAA+CGG | 0.512392 | 4.1:+70646588 | MS.gene76750:CDS |
| GACCTTGAATCATATATCAA+TGG | 0.517570 | 4.1:+70644836 | MS.gene76750:CDS |
| AAAGGGGAGGTAACTGAATC+GGG | 0.517863 | 4.1:+70644410 | MS.gene76750:CDS |
| GCGAAGAACGGAGGGAGGAG+CGG | 0.521333 | 4.1:+70644123 | MS.gene76750:CDS |
| ATTATTCCAATTTATGGACA+TGG | 0.526065 | 4.1:+70644434 | MS.gene76750:CDS |
| GTAAAGTGGAGGAGAGTAGT+GGG | 0.535109 | 4.1:+70644252 | MS.gene76750:CDS |
| TACAACTGATAGAAATGTAC+AGG | 0.535539 | 4.1:+70645057 | MS.gene76750:CDS |
| GCAACAGCAGGTGATGTTCA+AGG | 0.537071 | 4.1:+70644101 | MS.gene76750:CDS |
| TCGAGGAGGAACTCTCAAAC+CGG | 0.538001 | 4.1:-70644495 | None:intergenic |
| GGGATAGTTGAAAGTGTGAA+AGG | 0.543494 | 4.1:+70644167 | MS.gene76750:CDS |
| ACTCTAGGTGCCTTAGGTCG+AGG | 0.546117 | 4.1:-70644512 | None:intergenic |
| CTGATGGAAATGAAAGAAGC+CGG | 0.547924 | 4.1:+70644476 | MS.gene76750:CDS |
| GTTGAATTTCTAGTAACAGT+AGG | 0.548372 | 4.1:-70644893 | None:intergenic |
| GAATTTCTAGTAACAGTAGG+AGG | 0.555492 | 4.1:-70644890 | None:intergenic |
| TGTCTAATACTCTCAACTCT+AGG | 0.555708 | 4.1:-70644527 | None:intergenic |
| GGATAGTTGAAAGTGTGAAA+GGG | 0.557671 | 4.1:+70644168 | MS.gene76750:CDS |
| GTTTCAAGGTTGCTAGAGCA+AGG | 0.560862 | 4.1:+70644743 | MS.gene76750:CDS |
| GATAGTTGAAAGTGTGAAAG+GGG | 0.566431 | 4.1:+70644169 | MS.gene76750:CDS |
| GCGTTCATTTGATTCTATGT+TGG | 0.571256 | 4.1:+70643941 | MS.gene76750:CDS |
| ACAGGAGAAACTGCAACAGC+AGG | 0.572374 | 4.1:+70644089 | MS.gene76750:CDS |
| GTGATGTTCAAGGCGAAGAA+CGG | 0.575661 | 4.1:+70644111 | MS.gene76750:CDS |
| CGAGAGCGAGGCAGCGTCGG+GGG | 0.578008 | 4.1:+70644027 | MS.gene76750:CDS |
| TGGCGGCGGTGATTGTCTGA+TGG | 0.578360 | 4.1:+70644460 | MS.gene76750:CDS |
| TAGTTGAAAGTGTGAAAGGG+GGG | 0.581279 | 4.1:+70644171 | MS.gene76750:CDS |
| ATTTGATAGCAAAAGCTCTA+GGG | 0.584132 | 4.1:+70644210 | MS.gene76750:CDS |
| GATTGATAATGGTAAAGTGG+AGG | 0.594410 | 4.1:+70644241 | MS.gene76750:CDS |
| ACCATTGTTTCTCTCAGGTG+TGG | 0.595758 | 4.1:-70644663 | None:intergenic |
| ACGATGCTGATCAGGATGAA+GGG | 0.597581 | 4.1:+70644147 | MS.gene76750:CDS |
| TATGGACATGGAAATGGCGG+CGG | 0.603447 | 4.1:+70644446 | MS.gene76750:CDS |
| CAGACAGACAACAATGAACA+TGG | 0.607844 | 4.1:+70644707 | MS.gene76750:CDS |
| GATAGCAAAAGCTCTAGGGA+TGG | 0.616270 | 4.1:+70644214 | MS.gene76750:CDS |
| ATGTTCAAGGCGAAGAACGG+AGG | 0.619140 | 4.1:+70644114 | MS.gene76750:CDS |
| TCTTCATCTAGAGGTAGAAG+AGG | 0.623511 | 4.1:+70645097 | MS.gene76750:intron |
| AGACAGAAGTTGCTAACCCA+AGG | 0.623915 | 4.1:+70644545 | MS.gene76750:CDS |
| TCGAGAGCGAGGCAGCGTCG+GGG | 0.626763 | 4.1:+70644026 | MS.gene76750:CDS |
| TGTTCAAGGCGAAGAACGGA+GGG | 0.630328 | 4.1:+70644115 | MS.gene76750:CDS |
| ATAGTTGAAAGTGTGAAAGG+GGG | 0.631256 | 4.1:+70644170 | MS.gene76750:CDS |
| AAGCAATTACTTCGAGAGCG+AGG | 0.636181 | 4.1:+70644015 | MS.gene76750:CDS |
| TGCAGCTGTAGAATCAGTCA+CGG | 0.640246 | 4.1:-70646472 | None:intergenic |
| ACCACACCTGAGAGAAACAA+TGG | 0.640564 | 4.1:+70644662 | MS.gene76750:CDS |
| ATCAATGGTCACAATACAGG+AGG | 0.640899 | 4.1:+70644851 | MS.gene76750:CDS |
| ATGTCCTGTTTGTAAAGGGG+AGG | 0.641102 | 4.1:+70644397 | MS.gene76750:CDS |
| GTATGCCTATTCGAAAGCAA+AGG | 0.642527 | 4.1:+70644373 | MS.gene76750:CDS |
| ATTTATGGACATGGAAATGG+CGG | 0.647005 | 4.1:+70644443 | MS.gene76750:CDS |
| GGAATGTCCTGTTTGTAAAG+GGG | 0.658869 | 4.1:+70644394 | MS.gene76750:CDS |
| CTATTGTCCAAAGTATTCGG+CGG | 0.665724 | 4.1:+70644582 | MS.gene76750:CDS |
| GTACTGGTTTGATGATCCAA+AGG | 0.668438 | 4.1:-70643912 | None:intergenic |
| TCAAGGCGAAGAACGGAGGG+AGG | 0.671112 | 4.1:+70644118 | MS.gene76750:CDS |
| AGGCTCAGAAATTCAGACAA+CGG | 0.673554 | 4.1:+70646545 | MS.gene76750:CDS |
| CTAGGTGCCTTAGGTCGAGG+AGG | 0.679868 | 4.1:-70644509 | None:intergenic |
| TACGATAACTGATAGAAACA+CGG | 0.689120 | 4.1:-70644353 | None:intergenic |
| ACAAACCAGTCAGAGAGTCG+TGG | 0.695607 | 4.1:+70644932 | MS.gene76750:CDS |
| TGAATCCGAGAGGAGTTCGG+CGG | 0.720440 | 4.1:-70644053 | None:intergenic |
| ATTGGTTATCTGAATCCGAG+AGG | 0.732391 | 4.1:-70644063 | None:intergenic |
| ACAGACAACAATGAACATGG+TGG | 0.773237 | 4.1:+70644710 | MS.gene76750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAATTAATTTAAAATGA+AGG | + | chr4.1:70646277-70646296 | MS.gene76750:intron | 10.0% |
| !! | AACATATTTGATATTTGTCT+TGG | - | chr4.1:70645283-70645302 | None:intergenic | 20.0% |
| !! | ATCTAATAAAGAACATGTAA+AGG | - | chr4.1:70645700-70645719 | None:intergenic | 20.0% |
| !! | CTTTGATTGTAATATTTGTT+TGG | + | chr4.1:70644280-70644299 | MS.gene76750:CDS | 20.0% |
| !! | TCTAATAAAGAACATGTAAA+GGG | - | chr4.1:70645699-70645718 | None:intergenic | 20.0% |
| !! | TTAAACTGTTTATCCAAATA+GGG | + | chr4.1:70645589-70645608 | MS.gene76750:intron | 20.0% |
| !!! | AGTTTGTTGTATATATCATA+TGG | - | chr4.1:70645990-70646009 | None:intergenic | 20.0% |
| !!! | AGTTTTATTCAATAGATGTA+AGG | + | chr4.1:70645330-70645349 | MS.gene76750:intron | 20.0% |
| !!! | TATCATGATTGTTTCTTATA+AGG | + | chr4.1:70645932-70645951 | MS.gene76750:intron | 20.0% |
| !!! | TCTTTTGAATATCTAGTTTT+TGG | + | chr4.1:70645729-70645748 | MS.gene76750:intron | 20.0% |
| ! | ACTCTAATGTTAAGCTAATT+AGG | - | chr4.1:70646090-70646109 | None:intergenic | 25.0% |
| ! | ATTATTCCAATTTATGGACA+TGG | + | chr4.1:70644434-70644453 | MS.gene76750:CDS | 25.0% |
| ! | CAAAAAAAGATAGAGACTTA+TGG | + | chr4.1:70646392-70646411 | MS.gene76750:intron | 25.0% |
| ! | GTTAAACTGTTTATCCAAAT+AGG | + | chr4.1:70645588-70645607 | MS.gene76750:intron | 25.0% |
| ! | GTTCTTTATTAGATCTATCT+TGG | + | chr4.1:70645706-70645725 | MS.gene76750:intron | 25.0% |
| ! | TTATCAACATTCCTACTTAA+AGG | - | chr4.1:70645010-70645029 | None:intergenic | 25.0% |
| !! | ACTTAAGTTTTCTGTCTTTA+TGG | - | chr4.1:70646253-70646272 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGATTATCTAC+TGG | + | chr4.1:70645373-70645392 | MS.gene76750:intron | 25.0% |
| !! | CATAAACTATAGAGTATTAG+AGG | - | chr4.1:70645858-70645877 | None:intergenic | 25.0% |
| !!! | TATCTAGTTTTTGGATCTTT+TGG | + | chr4.1:70645738-70645757 | MS.gene76750:intron | 25.0% |
| AACAGCATTAAATTCTGCAA+TGG | + | chr4.1:70644790-70644809 | MS.gene76750:CDS | 30.0% | |
| ATTCAGATAACCAATGTTAC+AGG | + | chr4.1:70644071-70644090 | MS.gene76750:CDS | 30.0% | |
| CATACTGTAACAAACATAAG+AGG | - | chr4.1:70645633-70645652 | None:intergenic | 30.0% | |
| CATGCAACATGTTGTATTAT+CGG | + | chr4.1:70645900-70645919 | MS.gene76750:intron | 30.0% | |
| GACCATTGATATATGATTCA+AGG | - | chr4.1:70644841-70644860 | None:intergenic | 30.0% | |
| GACCTTGAATCATATATCAA+TGG | + | chr4.1:70644836-70644855 | MS.gene76750:CDS | 30.0% | |
| GATTACTTGAATACAACCTT+TGG | + | chr4.1:70645825-70645844 | MS.gene76750:intron | 30.0% | |
| TACAACTGATAGAAATGTAC+AGG | + | chr4.1:70645057-70645076 | MS.gene76750:CDS | 30.0% | |
| TACGATAACTGATAGAAACA+CGG | - | chr4.1:70644356-70644375 | None:intergenic | 30.0% | |
| TATATCAATGGTCACAATAC+AGG | + | chr4.1:70644848-70644867 | MS.gene76750:CDS | 30.0% | |
| TATGTTGGAAGAACTTGAAT+CGG | + | chr4.1:70643956-70643975 | MS.gene76750:CDS | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr4.1:70645363-70645382 | None:intergenic | 30.0% | |
| TCGGGTATTATTCCAATTTA+TGG | + | chr4.1:70644428-70644447 | MS.gene76750:CDS | 30.0% | |
| ! | ATTTGATAGCAAAAGCTCTA+GGG | + | chr4.1:70644210-70644229 | MS.gene76750:CDS | 30.0% |
| ! | CTCTTATGTTTGTTACAGTA+TGG | + | chr4.1:70645631-70645650 | MS.gene76750:intron | 30.0% |
| ! | CTTCTATTGTCCAAAGTATT+CGG | + | chr4.1:70644579-70644598 | MS.gene76750:CDS | 30.0% |
| !! | AGAGATTGATAATGGTAAAG+TGG | + | chr4.1:70644238-70644257 | MS.gene76750:CDS | 30.0% |
| !! | GTTGAATTTCTAGTAACAGT+AGG | - | chr4.1:70644896-70644915 | None:intergenic | 30.0% |
| AAGGAATGTCCTGTTTGTAA+AGG | + | chr4.1:70644392-70644411 | MS.gene76750:CDS | 35.0% | |
| ACATTCCTTTGCTTTCGAAT+AGG | - | chr4.1:70644381-70644400 | None:intergenic | 35.0% | |
| AGAGGATATTGACAATTAGC+AGG | - | chr4.1:70645615-70645634 | None:intergenic | 35.0% | |
| AGGAATGTCCTGTTTGTAAA+GGG | + | chr4.1:70644393-70644412 | MS.gene76750:CDS | 35.0% | |
| ATCCTGTTGTTGCATGTAAT+AGG | + | chr4.1:70646426-70646445 | MS.gene76750:intron | 35.0% | |
| ATTTATGGACATGGAAATGG+CGG | + | chr4.1:70644443-70644462 | MS.gene76750:CDS | 35.0% | |
| CCAATTTATGGACATGGAAA+TGG | + | chr4.1:70644440-70644459 | MS.gene76750:CDS | 35.0% | |
| CCATTTCCATGTCCATAAAT+TGG | - | chr4.1:70644443-70644462 | None:intergenic | 35.0% | |
| CTTCTCTTTCTCCTTTAAGT+AGG | + | chr4.1:70644996-70645015 | MS.gene76750:CDS | 35.0% | |
| CTTCTGTGTCTCTGTTAAAT+AGG | + | chr4.1:70646499-70646518 | MS.gene76750:CDS | 35.0% | |
| GCAATGCACATGATCTTTAT+GGG | - | chr4.1:70645881-70645900 | None:intergenic | 35.0% | |
| GCGTTCATTTGATTCTATGT+TGG | + | chr4.1:70643941-70643960 | MS.gene76750:CDS | 35.0% | |
| TATTAGAGGCTCTTATCCAA+AGG | - | chr4.1:70645844-70645863 | None:intergenic | 35.0% | |
| TATTTCCACTCCTTCTGTAT+TGG | + | chr4.1:70646144-70646163 | MS.gene76750:intron | 35.0% | |
| TCAAACGGTAGAAGAAGAAA+TGG | + | chr4.1:70646603-70646622 | MS.gene76750:CDS | 35.0% | |
| TCCTGTTGTTGCATGTAATA+GGG | + | chr4.1:70646427-70646446 | MS.gene76750:intron | 35.0% | |
| TGCAATGCACATGATCTTTA+TGG | - | chr4.1:70645882-70645901 | None:intergenic | 35.0% | |
| TGTAAGGATATTTGCCTGTT+TGG | + | chr4.1:70645346-70645365 | MS.gene76750:intron | 35.0% | |
| TGTCTAATACTCTCAACTCT+AGG | - | chr4.1:70644530-70644549 | None:intergenic | 35.0% | |
| TTCTACCTCTAGATGAAGAA+GGG | - | chr4.1:70645096-70645115 | None:intergenic | 35.0% | |
| TTCTTCTACCGTTTGATGAA+GGG | - | chr4.1:70646599-70646618 | None:intergenic | 35.0% | |
| ! | ATAGTTGAAAGTGTGAAAGG+GGG | + | chr4.1:70644170-70644189 | MS.gene76750:CDS | 35.0% |
| ! | ATGACGGTCTTTTATGTAAG+TGG | + | chr4.1:70645174-70645193 | MS.gene76750:intron | 35.0% |
| ! | CATTTGATAGCAAAAGCTCT+AGG | + | chr4.1:70644209-70644228 | MS.gene76750:CDS | 35.0% |
| ! | GATAGTTGAAAGTGTGAAAG+GGG | + | chr4.1:70644169-70644188 | MS.gene76750:CDS | 35.0% |
| ! | GGATAGTTGAAAGTGTGAAA+GGG | + | chr4.1:70644168-70644187 | MS.gene76750:CDS | 35.0% |
| ! | GTCGATAATGTTGCTGTTAT+AGG | + | chr4.1:70646525-70646544 | MS.gene76750:CDS | 35.0% |
| ! | TTCTGCTGAAAGATTAGTTC+AGG | + | chr4.1:70644814-70644833 | MS.gene76750:CDS | 35.0% |
| ! | TTTTGGTCAGTGTTCAGATT+GGG | + | chr4.1:70645755-70645774 | MS.gene76750:intron | 35.0% |
| !! | GAATTTCTAGTAACAGTAGG+AGG | - | chr4.1:70644893-70644912 | None:intergenic | 35.0% |
| !! | GATTGATAATGGTAAAGTGG+AGG | + | chr4.1:70644241-70644260 | MS.gene76750:CDS | 35.0% |
| !!! | GTTGTGGTCATTTGTTTTGT+TGG | + | chr4.1:70644330-70644349 | MS.gene76750:CDS | 35.0% |
| ACAGACAACAATGAACATGG+TGG | + | chr4.1:70644710-70644729 | MS.gene76750:CDS | 40.0% | |
| ACATGCAACAACAGGATATC+TGG | - | chr4.1:70646423-70646442 | None:intergenic | 40.0% | |
| AGAAGAAGAAGATGCTCCTT+GGG | - | chr4.1:70644564-70644583 | None:intergenic | 40.0% | |
| AGGCTCAGAAATTCAGACAA+CGG | + | chr4.1:70646545-70646564 | MS.gene76750:CDS | 40.0% | |
| AGTATGCATGCATGTAAACG+AGG | - | chr4.1:70645225-70645244 | None:intergenic | 40.0% | |
| ATCAATGGTCACAATACAGG+AGG | + | chr4.1:70644851-70644870 | MS.gene76750:CDS | 40.0% | |
| ATTGGTTATCTGAATCCGAG+AGG | - | chr4.1:70644066-70644085 | None:intergenic | 40.0% | |
| CAGACAGACAACAATGAACA+TGG | + | chr4.1:70644707-70644726 | MS.gene76750:CDS | 40.0% | |
| CGCAATCTTCTTCTTCTTCT+TGG | - | chr4.1:70645154-70645173 | None:intergenic | 40.0% | |
| CTCTCGAAGTAATTGCTTCA+AGG | - | chr4.1:70644013-70644032 | None:intergenic | 40.0% | |
| CTGATGGAAATGAAAGAAGC+CGG | + | chr4.1:70644476-70644495 | MS.gene76750:CDS | 40.0% | |
| CTGTTAGACCCTTCATCAAA+CGG | + | chr4.1:70646588-70646607 | MS.gene76750:CDS | 40.0% | |
| CTTCTACCTCTAGATGAAGA+AGG | - | chr4.1:70645097-70645116 | None:intergenic | 40.0% | |
| CTTCTTCTACCGTTTGATGA+AGG | - | chr4.1:70646600-70646619 | None:intergenic | 40.0% | |
| GAAGAAGAAGATTGCGATGA+CGG | + | chr4.1:70645158-70645177 | MS.gene76750:CDS | 40.0% | |
| GGAATGTCCTGTTTGTAAAG+GGG | + | chr4.1:70644394-70644413 | MS.gene76750:CDS | 40.0% | |
| GGGATGGAAGAGATTGATAA+TGG | + | chr4.1:70644230-70644249 | MS.gene76750:CDS | 40.0% | |
| GTATGCCTATTCGAAAGCAA+AGG | + | chr4.1:70644373-70644392 | MS.gene76750:CDS | 40.0% | |
| TAAAGGGGAGGTAACTGAAT+CGG | + | chr4.1:70644409-70644428 | MS.gene76750:CDS | 40.0% | |
| TAGAAGAAGAAGATGCTCCT+TGG | - | chr4.1:70644565-70644584 | None:intergenic | 40.0% | |
| TATGAAACCGCCGAATACTT+TGG | - | chr4.1:70644592-70644611 | None:intergenic | 40.0% | |
| TCCCTATTACATGCAACAAC+AGG | - | chr4.1:70646431-70646450 | None:intergenic | 40.0% | |
| TCTCAGGTGTGGTACTATTA+GGG | - | chr4.1:70644655-70644674 | None:intergenic | 40.0% | |
| TCTTCATCTAGAGGTAGAAG+AGG | + | chr4.1:70645097-70645116 | MS.gene76750:intron | 40.0% | |
| TGACCACAACATGTCAAAAC+AGG | - | chr4.1:70644320-70644339 | None:intergenic | 40.0% | |
| TGATTTGAATCAGGAGCCTT+TGG | + | chr4.1:70643896-70643915 | MS.gene76750:CDS | 40.0% | |
| TGCAGTTTCTCCTGTAACAT+TGG | - | chr4.1:70644084-70644103 | None:intergenic | 40.0% | |
| TGTCTCACTTGAGTAAGTTC+AGG | + | chr4.1:70645654-70645673 | MS.gene76750:intron | 40.0% | |
| TTGCTTCAAGGTGTGTGATT+CGG | - | chr4.1:70644001-70644020 | None:intergenic | 40.0% | |
| ! | AAATGAACGCACTGATGTAC+TGG | - | chr4.1:70643931-70643950 | None:intergenic | 40.0% |
| ! | CAACAAACTAGAAGCATGTG+TGG | + | chr4.1:70646001-70646020 | MS.gene76750:intron | 40.0% |
| ! | CTATTGTCCAAAGTATTCGG+CGG | + | chr4.1:70644582-70644601 | MS.gene76750:CDS | 40.0% |
| ! | CTTTTGGTCAGTGTTCAGAT+TGG | + | chr4.1:70645754-70645773 | MS.gene76750:intron | 40.0% |
| ! | GGGATAGTTGAAAGTGTGAA+AGG | + | chr4.1:70644167-70644186 | MS.gene76750:CDS | 40.0% |
| ! | TAGTTGAAAGTGTGAAAGGG+GGG | + | chr4.1:70644171-70644190 | MS.gene76750:CDS | 40.0% |
| !! | CATAACCGAATTGGTGGATT+TGG | + | chr4.1:70644608-70644627 | MS.gene76750:CDS | 40.0% |
| !! | GTACTGGTTTGATGATCCAA+AGG | - | chr4.1:70643915-70643934 | None:intergenic | 40.0% |
| !! | GTTGATAATGTTGCTGTTGC+AGG | + | chr4.1:70645022-70645041 | MS.gene76750:CDS | 40.0% |
| !!! | GATCCTGTTTTGACATGTTG+TGG | + | chr4.1:70644314-70644333 | MS.gene76750:CDS | 40.0% |
| AAAGGGGAGGTAACTGAATC+GGG | + | chr4.1:70644410-70644429 | MS.gene76750:CDS | 45.0% | |
| AAAGTGTGAAAGGGGGGAAA+AGG | + | chr4.1:70644177-70644196 | MS.gene76750:CDS | 45.0% | |
| AACGATGCTGATCAGGATGA+AGG | + | chr4.1:70644146-70644165 | MS.gene76750:CDS | 45.0% | |
| AAGCAATTACTTCGAGAGCG+AGG | + | chr4.1:70644015-70644034 | MS.gene76750:CDS | 45.0% | |
| ACCACAAACTGGAGTCAATG+AGG | - | chr4.1:70645789-70645808 | None:intergenic | 45.0% | |
| ACCACACCTGAGAGAAACAA+TGG | + | chr4.1:70644662-70644681 | MS.gene76750:CDS | 45.0% | |
| ACGATGCTGATCAGGATGAA+GGG | + | chr4.1:70644147-70644166 | MS.gene76750:CDS | 45.0% | |
| AGACAGAAGTTGCTAACCCA+AGG | + | chr4.1:70644545-70644564 | MS.gene76750:CDS | 45.0% | |
| ATCGTCATACGAGTTGCTGT+CGG | - | chr4.1:70646177-70646196 | None:intergenic | 45.0% | |
| ATCTGAATCCGAGAGGAGTT+CGG | - | chr4.1:70644059-70644078 | None:intergenic | 45.0% | |
| ATGTCCTGTTTGTAAAGGGG+AGG | + | chr4.1:70644397-70644416 | MS.gene76750:CDS | 45.0% | |
| CGGTTTCATAACCGAATTGG+TGG | + | chr4.1:70644602-70644621 | MS.gene76750:CDS | 45.0% | |
| CTAGACCCTTCTTCATCTAG+AGG | + | chr4.1:70645088-70645107 | MS.gene76750:intron | 45.0% | |
| CTCTCAGGTGTGGTACTATT+AGG | - | chr4.1:70644656-70644675 | None:intergenic | 45.0% | |
| GACAATTAGCAGGCCCTATT+TGG | - | chr4.1:70645605-70645624 | None:intergenic | 45.0% | |
| GCTCTCCAAATCCACCAATT+CGG | - | chr4.1:70644616-70644635 | None:intergenic | 45.0% | |
| GTAAAGTGGAGGAGAGTAGT+GGG | + | chr4.1:70644252-70644271 | MS.gene76750:CDS | 45.0% | |
| GTGATGTTCAAGGCGAAGAA+CGG | + | chr4.1:70644111-70644130 | MS.gene76750:CDS | 45.0% | |
| GTGGTTCTCAACAGGTTTCA+AGG | + | chr4.1:70644729-70644748 | MS.gene76750:CDS | 45.0% | |
| GTTACCTCCCCTTTACAAAC+AGG | - | chr4.1:70644404-70644423 | None:intergenic | 45.0% | |
| GTTTCAAGGTTGCTAGAGCA+AGG | + | chr4.1:70644743-70644762 | MS.gene76750:CDS | 45.0% | |
| TGAACATGGTGGTTCTCAAC+AGG | + | chr4.1:70644721-70644740 | MS.gene76750:CDS | 45.0% | |
| TGCAGCTGTAGAATCAGTCA+CGG | - | chr4.1:70646475-70646494 | None:intergenic | 45.0% | |
| TTGTGCCAATACAGAAGGAG+TGG | - | chr4.1:70646152-70646171 | None:intergenic | 45.0% | |
| ! | ACCATTGTTTCTCTCAGGTG+TGG | - | chr4.1:70644666-70644685 | None:intergenic | 45.0% |
| ! | ACTCCTTCTGTATTGGCACA+AGG | + | chr4.1:70646151-70646170 | MS.gene76750:intron | 45.0% |
| ! | GGCAAACCATTGTTTCTCTC+AGG | - | chr4.1:70644671-70644690 | None:intergenic | 45.0% |
| !! | GATAGCAAAAGCTCTAGGGA+TGG | + | chr4.1:70644214-70644233 | MS.gene76750:CDS | 45.0% |
| !! | TCATTGACTCCAGTTTGTGG+TGG | + | chr4.1:70645788-70645807 | MS.gene76750:intron | 45.0% |
| ACAAACCAGTCAGAGAGTCG+TGG | + | chr4.1:70644932-70644951 | MS.gene76750:CDS | 50.0% | |
| ACAGGAGAAACTGCAACAGC+AGG | + | chr4.1:70644089-70644108 | MS.gene76750:CDS | 50.0% | |
| AGCTGCTGCAGCTACAGAAT+TGG | - | chr4.1:70644978-70644997 | None:intergenic | 50.0% | |
| ATGTTCAAGGCGAAGAACGG+AGG | + | chr4.1:70644114-70644133 | MS.gene76750:CDS | 50.0% | |
| CAAACTGGAGTCAATGAGGC+AGG | - | chr4.1:70645785-70645804 | None:intergenic | 50.0% | |
| CGGCGGTTTCATAACCGAAT+TGG | + | chr4.1:70644599-70644618 | MS.gene76750:CDS | 50.0% | |
| CTCTCAACTCTAGGTGCCTT+AGG | - | chr4.1:70644521-70644540 | None:intergenic | 50.0% | |
| GCAACAGCAGGTGATGTTCA+AGG | + | chr4.1:70644101-70644120 | MS.gene76750:CDS | 50.0% | |
| GGTAAAGTGGAGGAGAGTAG+TGG | + | chr4.1:70644251-70644270 | MS.gene76750:CDS | 50.0% | |
| TATGGACATGGAAATGGCGG+CGG | + | chr4.1:70644446-70644465 | MS.gene76750:CDS | 50.0% | |
| TCGAGGAGGAACTCTCAAAC+CGG | - | chr4.1:70644498-70644517 | None:intergenic | 50.0% | |
| TGACTCCAGTTTGTGGTGGT+GGG | + | chr4.1:70645792-70645811 | MS.gene76750:intron | 50.0% | |
| TGTTCAAGGCGAAGAACGGA+GGG | + | chr4.1:70644115-70644134 | MS.gene76750:CDS | 50.0% | |
| TTGACTCCAGTTTGTGGTGG+TGG | + | chr4.1:70645791-70645810 | MS.gene76750:intron | 50.0% | |
| !! | GCCTCATTGACTCCAGTTTG+TGG | + | chr4.1:70645785-70645804 | MS.gene76750:intron | 50.0% |
| ACTCTAGGTGCCTTAGGTCG+AGG | - | chr4.1:70644515-70644534 | None:intergenic | 55.0% | |
| ATGACCCCACCACCACAAAC+TGG | - | chr4.1:70645800-70645819 | None:intergenic | 55.0% | |
| CTTGACCACGACTCTCTGAC+TGG | - | chr4.1:70644940-70644959 | None:intergenic | 55.0% | |
| GAGAGTTCCTCCTCGACCTA+AGG | + | chr4.1:70644502-70644521 | MS.gene76750:CDS | 55.0% | |
| TGAATCCGAGAGGAGTTCGG+CGG | - | chr4.1:70644056-70644075 | None:intergenic | 55.0% | |
| ! | CGGCCTTGTGCCAATACAGA+AGG | - | chr4.1:70646157-70646176 | None:intergenic | 55.0% |
| ! | GACTCCAGTTTGTGGTGGTG+GGG | + | chr4.1:70645793-70645812 | MS.gene76750:intron | 55.0% |
| !! | AGTTTGTGGTGGTGGGGTCA+TGG | + | chr4.1:70645799-70645818 | MS.gene76750:intron | 55.0% |
| CTAGGTGCCTTAGGTCGAGG+AGG | - | chr4.1:70644512-70644531 | None:intergenic | 60.0% | |
| GGAGCGGAACGATGCTGATC+AGG | + | chr4.1:70644139-70644158 | MS.gene76750:CDS | 60.0% | |
| GTCTGCGTGCGAGACTGAAC+AGG | - | chr4.1:70644692-70644711 | None:intergenic | 60.0% | |
| TCAAGGCGAAGAACGGAGGG+AGG | + | chr4.1:70644118-70644137 | MS.gene76750:CDS | 60.0% | |
| TGGCGGCGGTGATTGTCTGA+TGG | + | chr4.1:70644460-70644479 | MS.gene76750:CDS | 60.0% | |
| CTTCGAGAGCGAGGCAGCGT+CGG | + | chr4.1:70644024-70644043 | MS.gene76750:CDS | 65.0% | |
| GCGAAGAACGGAGGGAGGAG+CGG | + | chr4.1:70644123-70644142 | MS.gene76750:CDS | 65.0% | |
| GGTTGCCGCCGAACTCCTCT+CGG | + | chr4.1:70644048-70644067 | MS.gene76750:CDS | 65.0% | |
| TTCGAGAGCGAGGCAGCGTC+GGG | + | chr4.1:70644025-70644044 | MS.gene76750:CDS | 65.0% | |
| TCGAGAGCGAGGCAGCGTCG+GGG | + | chr4.1:70644026-70644045 | MS.gene76750:CDS | 70.0% | |
| ! | CGAGAGCGAGGCAGCGTCGG+GGG | + | chr4.1:70644027-70644046 | MS.gene76750:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 70643888 | 70646671 | 70643888 | ID=MS.gene76750 |
| chr4.1 | mRNA | 70643888 | 70646671 | 70643888 | ID=MS.gene76750.t1;Parent=MS.gene76750 |
| chr4.1 | exon | 70643888 | 70645078 | 70643888 | ID=MS.gene76750.t1.exon1;Parent=MS.gene76750.t1 |
| chr4.1 | CDS | 70643888 | 70645078 | 70643888 | ID=cds.MS.gene76750.t1;Parent=MS.gene76750.t1 |
| chr4.1 | exon | 70645110 | 70645188 | 70645110 | ID=MS.gene76750.t1.exon2;Parent=MS.gene76750.t1 |
| chr4.1 | CDS | 70645110 | 70645188 | 70645110 | ID=cds.MS.gene76750.t1;Parent=MS.gene76750.t1 |
| chr4.1 | exon | 70646448 | 70646671 | 70646448 | ID=MS.gene76750.t1.exon3;Parent=MS.gene76750.t1 |
| chr4.1 | CDS | 70646448 | 70646671 | 70646448 | ID=cds.MS.gene76750.t1;Parent=MS.gene76750.t1 |
| Gene Sequence |
| Protein sequence |
