AlfalfaGEDB | MS.gene62748

M. sativa cultivar XinJiangDaYe / MS.gene62748

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62748.t1	XP_024633451.1	84.8	46	5	1	1	44	26	71	4.60E-09	70.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62748.t1	G7L456	48.8	84	29	2	1	70	1	84	9.9e-06	59.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049262	MS.gene62748	0.821606	3.69E-53	-1.69E-46
MS.gene049587	MS.gene62748	0.825078	5.70E-54	-1.69E-46
MS.gene049853	MS.gene62748	0.868719	5.30E-66	-1.69E-46
MS.gene049968	MS.gene62748	0.811178	7.97E-51	-1.69E-46
MS.gene050430	MS.gene62748	0.814828	1.26E-51	-1.69E-46
MS.gene050611	MS.gene62748	0.802197	6.29E-49	-1.69E-46
MS.gene051932	MS.gene62748	0.812052	5.15E-51	-1.69E-46
MS.gene052447	MS.gene62748	0.811282	7.57E-51	-1.69E-46
MS.gene053512	MS.gene62748	0.808739	2.67E-50	-1.69E-46
MS.gene053875	MS.gene62748	0.803738	3.02E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62748.t1	MTR_7g012300	57.500	120	36	4	1	105	1	120	2.13e-27	98.6
MS.gene62748.t1	MTR_2g043940	72.414	58	16	0	59	116	305	362	9.51e-17	74.7
MS.gene62748.t1	MTR_7g056577	66.667	66	17	1	56	116	47	112	3.37e-16	69.7
MS.gene62748.t1	MTR_5g061300	54.545	99	37	3	21	112	229	326	8.79e-16	71.6
MS.gene62748.t1	MTR_5g061660	60.000	75	16	1	56	116	71	145	1.09e-13	63.9
MS.gene62748.t1	MTR_0039s0180	63.934	61	18	1	57	113	58	118	1.79e-13	62.4
MS.gene62748.t1	MTR_2g461540	60.000	75	16	2	56	116	3	77	1.10e-12	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 18 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCAATTGGATGTAGAAAC+TGG	0.389575	7.3:-65343736	MS.gene62748:CDS
ACTTCAAGAAATGGTTGAAA+AGG	0.483448	7.3:-65343599	MS.gene62748:CDS
AGGAAGTAGAGGAAAGCAAT+TGG	0.498254	7.3:-65343749	MS.gene62748:CDS
ATGAAATTCAAGAGGATGAT+CGG	0.537624	7.3:-65343022	MS.gene62748:CDS
ATGGGAAAGGAGTGTGTACC+AGG	0.471236	7.3:-65343544	MS.gene62748:intron
CATAGATGAGGAATTTCAAG+AGG	0.630357	7.3:-65343138	MS.gene62748:CDS
CATAGGTGATGGGTTTCAGA+AGG	0.615780	7.3:-65343084	MS.gene62748:CDS
CGCATATCATGAATTTCTTG+AGG	0.553600	7.3:-65343111	MS.gene62748:CDS
CTAGTCCCAACTTCAAGAAA+TGG	0.372385	7.3:-65343608	MS.gene62748:intron
CTTGAGGACAACATAGGTGA+TGG	0.475620	7.3:-65343095	MS.gene62748:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCAAGAAATGGTTGAAA+AGG	-	chr7.3:65343189-65343208	MS.gene62748:CDS	30.0%
ATGAAATTCAAGAGGATGAT+CGG	-	chr7.3:65343766-65343785	MS.gene62748:CDS	30.0%
CAAAACAAATGTTCTACTTG+CGG	-	chr7.3:65343420-65343439	MS.gene62748:intron	30.0%
TCTAGATGATGAAATTCAAG+AGG	-	chr7.3:65343758-65343777	MS.gene62748:CDS	30.0%
TGAAAAAGATGACATAGATG+AGG	-	chr7.3:65343638-65343657	MS.gene62748:intron	30.0%
TTCAACCATTTCTTGAAGTT+GGG	+	chr7.3:65343188-65343207	None:intergenic	30.0%
TTTCAACCATTTCTTGAAGT+TGG	+	chr7.3:65343189-65343208	None:intergenic	30.0%
AAGCAATTGGATGTAGAAAC+TGG	-	chr7.3:65343052-65343071	MS.gene62748:CDS	35.0%
CATAGATGAGGAATTTCAAG+AGG	-	chr7.3:65343650-65343669	MS.gene62748:intron	35.0%
CGCATATCATGAATTTCTTG+AGG	-	chr7.3:65343677-65343696	MS.gene62748:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	65343019	65343791	65343019	ID=MS.gene62748
chr7.3	mRNA	65343019	65343791	65343019	ID=MS.gene62748.t1;Parent=MS.gene62748
chr7.3	exon	65343732	65343791	65343732	ID=MS.gene62748.t1.exon1;Parent=MS.gene62748.t1
chr7.3	CDS	65343732	65343791	65343732	ID=cds.MS.gene62748.t1;Parent=MS.gene62748.t1
chr7.3	exon	65343545	65343626	65343545	ID=MS.gene62748.t1.exon2;Parent=MS.gene62748.t1
chr7.3	CDS	65343545	65343626	65343545	ID=cds.MS.gene62748.t1;Parent=MS.gene62748.t1
chr7.3	exon	65343019	65343230	65343019	ID=MS.gene62748.t1.exon3;Parent=MS.gene62748.t1
chr7.3	CDS	65343019	65343230	65343019	ID=cds.MS.gene62748.t1;Parent=MS.gene62748.t1

Gene Sequence

>MS.gene62748

ATGTTTTTTGAAACTCGACAAGGAAGTAGAGGAAAGCAATTGGATGTAGAAACTGGAAAAGTAATTGTATGTAAAAATTTAAAGTTACGGTAAATTGTGTTTAACTAATATAGGCGGCAAACATTGTTTATGAGTAGTTAATATTTTCTTGTATTTTTTTGCTAGTCCCAACTTCAAGAAATGGTTGAAAAGGAGGAAAGTGATATCGAAGCTTTTAAAGCTGTTATGGGAAAGGAGTGTGTACCAGGTCGGATTTTGATTGTGTTGCAAAATTGTGATGTTTGTGTGAACTTGTGATTTATTTCTGCATTTTTTTGTTTGTTTCTGTGTTGCATAACTTGACACAAGTTGAAGAAACTTAAAAATGGGCTTGTAATGATAGAATTAGGAAGGGAAAAGTGCAAAACAAATGTTCTACTTGCGGTGCTGTTTTGAGCGTGTTTTACTTGTTGATTTGGTTTTTATTTGTGCGAGGTATAACTCTTGTTGATGTCTTGATTGTCCTTTGAATCAACAATATCTACGGTTGATGTATTTTGTTTTATTTTCATATGCAACAAGGTATCGATGAAGATGTTGAAAATTATTTTCATATGCAACAAGGTATCGATGAAGATGTTGAAAAAGATGACATAGATGAGGAATTTCAAGAGGAAGACGCATATCATGAATTTCTTGAGGACAACATAGGTGATGGGTTTCAGAAGGATGATATATATGATGAATTTCAAGAGGATGATCTAGATGATGAAATTCAAGAGGATGATCGGTGA

Protein sequence

>MS.gene62748.t1

MFFETRQGSRGKQLDVETGKSQLQEMVEKEESDIEAFKAVMGKECVPGIDEDVENYFHMQQGIDEDVEKDDIDEEFQEEDAYHEFLEDNIGDGFQKDDIYDEFQEDDLDDEIQEDDR