Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060336.t1 | XP_003609432.1 | 93.4 | 333 | 14 | 1 | 1 | 325 | 91 | 423 | 1.70E-162 | 582 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060336.t1 | Q9ASQ5 | 59.8 | 338 | 119 | 2 | 4 | 325 | 96 | 432 | 2.8e-97 | 356.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060336.t1 | G7JFF3 | 93.4 | 333 | 14 | 1 | 1 | 325 | 91 | 423 | 1.2e-162 | 582.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050505 | MS.gene060336 | 0.830725 | 2.50E-55 | -1.69E-46 |
| MS.gene053009 | MS.gene060336 | -0.80071 | 1.27E-48 | -1.69E-46 |
| MS.gene060336 | MS.gene060337 | 0.89609 | 5.15E-76 | -1.69E-46 |
| MS.gene060336 | MS.gene061609 | 0.805416 | 1.35E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene074249 | -0.810427 | 1.16E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene22384 | -0.818707 | 1.70E-52 | -1.69E-46 |
| MS.gene060336 | MS.gene23996 | -0.802711 | 4.93E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene28267 | -0.815539 | 8.78E-52 | -1.69E-46 |
| MS.gene060336 | MS.gene32234 | -0.80117 | 1.02E-48 | -1.69E-46 |
| MS.gene060336 | MS.gene32758 | -0.82176 | 3.40E-53 | -1.69E-46 |
| MS.gene060336 | MS.gene33911 | -0.802115 | 6.54E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene36927 | 0.806283 | 8.87E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene37538 | 0.801894 | 7.26E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene40534 | -0.81367 | 2.28E-51 | -1.69E-46 |
| MS.gene060336 | MS.gene41080 | -0.808183 | 3.51E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene43377 | 0.804644 | 1.96E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene48301 | -0.802972 | 4.35E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene53698 | 0.81318 | 2.92E-51 | -1.69E-46 |
| MS.gene060336 | MS.gene54465 | -0.810201 | 1.30E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene54468 | -0.807565 | 4.75E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene55694 | -0.809345 | 1.98E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene57061 | -0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene57132 | -0.807806 | 4.22E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene58022 | 0.851329 | 9.53E-61 | -1.69E-46 |
| MS.gene060336 | MS.gene58023 | 0.836991 | 6.76E-57 | -1.69E-46 |
| MS.gene060336 | MS.gene58183 | 0.897879 | 9.16E-77 | -1.69E-46 |
| MS.gene060336 | MS.gene58374 | -0.805921 | 1.06E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene62506 | -0.805154 | 1.53E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene68130 | -0.80575 | 1.15E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene70106 | -0.813306 | 2.74E-51 | -1.69E-46 |
| MS.gene060336 | MS.gene73819 | -0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene060336 | MS.gene76905 | -0.811447 | 6.97E-51 | -1.69E-46 |
| MS.gene060336 | MS.gene76908 | -0.815478 | 9.06E-52 | -1.69E-46 |
| MS.gene060336 | MS.gene79026 | -0.811554 | 6.61E-51 | -1.69E-46 |
| MS.gene060336 | MS.gene80968 | -0.80557 | 1.25E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene80970 | -0.813656 | 2.29E-51 | -1.69E-46 |
| MS.gene060336 | MS.gene80971 | -0.820662 | 6.09E-53 | -1.69E-46 |
| MS.gene060336 | MS.gene88851 | -0.807128 | 5.88E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene89545 | -0.815808 | 7.65E-52 | -1.69E-46 |
| MS.gene060336 | MS.gene92216 | -0.800369 | 1.49E-48 | -1.69E-46 |
| MS.gene060336 | MS.gene92218 | -0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene92220 | -0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene060336 | MS.gene92366 | -0.806182 | 9.31E-50 | -1.69E-46 |
| MS.gene060336 | MS.gene94829 | -0.802964 | 4.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGCTAAAGTAGCCGATTT+TGG | 0.189151 | 8.3:-10894211 | MS.gene060336:CDS |
| CAAATAGGAGAAGGAGGTTT+TGG | 0.222709 | 8.3:-10895977 | MS.gene060336:CDS |
| TTTGCTCTTGCAGTGGAATT+AGG | 0.233044 | 8.3:-10896166 | MS.gene060336:intron |
| AAAAGTGACGTTTACTCATT+TGG | 0.268851 | 8.3:-10894076 | MS.gene060336:CDS |
| GAAGGGAACAGTCGGCTATT+TGG | 0.300140 | 8.3:-10894134 | MS.gene060336:CDS |
| GACTGAAGTCTGCTGAGTTT+TGG | 0.319257 | 8.3:+10896058 | None:intergenic |
| AAGGTTTCGATGATCAATTT+TGG | 0.320591 | 8.3:+10895352 | None:intergenic |
| TTGCCACAAACTCCGTAATA+AGG | 0.327103 | 8.3:+10895288 | None:intergenic |
| TGGCTGTAAAACGTGCAAAA+AGG | 0.327174 | 8.3:-10895916 | MS.gene060336:CDS |
| TACTTTAGCTCGCATGCTTT+CGG | 0.329655 | 8.3:+10894222 | None:intergenic |
| AGTTTCCTTCCTGCCTTTGA+AGG | 0.372344 | 8.3:+10896819 | None:intergenic |
| TGTGTATGGTCGTTGTTTAC+AGG | 0.380392 | 8.3:+10894172 | None:intergenic |
| TGGTACTCTTCGAGAACATT+TGG | 0.397809 | 8.3:-10895264 | MS.gene060336:CDS |
| CAACATCAATTGCAATTTCA+AGG | 0.405535 | 8.3:+10894991 | None:intergenic |
| CGAAACCTTGTGAAGCTACT+TGG | 0.416679 | 8.3:-10895338 | MS.gene060336:CDS |
| CAGCAGTGAAGTCGAACTTC+TGG | 0.433967 | 8.3:-10895375 | MS.gene060336:CDS |
| ATTACGGAGTTTGTGGCAAA+TGG | 0.437344 | 8.3:-10895284 | MS.gene060336:CDS |
| GTTAATTTGCCTTCAAAGGC+AGG | 0.446182 | 8.3:-10896828 | MS.gene060336:CDS |
| ATTACATCTCAACCTGAGTC+AGG | 0.448193 | 8.3:-10896035 | MS.gene060336:CDS |
| TATCCTTATTACGGAGTTTG+TGG | 0.450614 | 8.3:-10895291 | MS.gene060336:CDS |
| ACCTATCTGCATCTGTATGC+AGG | 0.455117 | 8.3:-10894957 | MS.gene060336:intron |
| GGAGACATTGAGAATCTTGA+CGG | 0.458728 | 8.3:+10896079 | None:intergenic |
| AAGCTTTGCAAATCCAAAAT+CGG | 0.466093 | 8.3:+10894198 | None:intergenic |
| GATCCCGGCTAGTCCACTTC+GGG | 0.470734 | 8.3:-10896113 | MS.gene060336:CDS |
| GGCACCCGAAGTGGACTAGC+CGG | 0.472365 | 8.3:+10896109 | None:intergenic |
| AAACGAACGTATCCTTATTA+CGG | 0.477704 | 8.3:-10895300 | MS.gene060336:CDS |
| CTTTGGTAGAAATGTGTGTA+TGG | 0.486802 | 8.3:+10894158 | None:intergenic |
| TTCAGTTAATTTGCCTTCAA+AGG | 0.486885 | 8.3:-10896832 | None:intergenic |
| TTTAGACGATGGCCTGGTTG+TGG | 0.491375 | 8.3:-10895936 | MS.gene060336:CDS |
| TTTCTATGGGAAGAGAAGAA+AGG | 0.500949 | 8.3:-10896672 | MS.gene060336:CDS |
| GGCTCATTTAGACGATGGCC+TGG | 0.511850 | 8.3:-10895942 | MS.gene060336:CDS |
| CAAGTGTCAAACAGCCAAGT+TGG | 0.518331 | 8.3:-10896747 | MS.gene060336:CDS |
| GCTTTCGGTTAGAAGAATGT+TGG | 0.518470 | 8.3:+10894237 | None:intergenic |
| GCACCCGAAGTGGACTAGCC+GGG | 0.531645 | 8.3:+10896110 | None:intergenic |
| TTCTCTTCCCATAGAAAACA+AGG | 0.537307 | 8.3:+10896678 | None:intergenic |
| GCCGACTGTTCCCTTCACTT+TGG | 0.545419 | 8.3:+10894141 | None:intergenic |
| ATCAGAAACTGATGGTTCAA+AGG | 0.546450 | 8.3:+10896138 | None:intergenic |
| AACAATAATTCGACGTCACA+AGG | 0.551644 | 8.3:-10896780 | MS.gene060336:CDS |
| AGATCCCGGCTAGTCCACTT+CGG | 0.553615 | 8.3:-10896114 | MS.gene060336:CDS |
| CACATTTCTACCAAAGTGAA+GGG | 0.567142 | 8.3:-10894151 | MS.gene060336:CDS |
| GGACTAGGTGGCACCCGAAG+TGG | 0.567503 | 8.3:+10896100 | None:intergenic |
| ATCAGTTTCTGATAAGATCC+CGG | 0.569707 | 8.3:-10896128 | MS.gene060336:CDS |
| TCTGACTGGCCGTCGCCCTG+TGG | 0.576329 | 8.3:-10894035 | MS.gene060336:CDS |
| ATTGAGAATCTTGACGGACT+AGG | 0.584446 | 8.3:+10896085 | None:intergenic |
| ACACATTTCTACCAAAGTGA+AGG | 0.586278 | 8.3:-10894152 | MS.gene060336:CDS |
| ATTTGCCTTCAAAGGCAGGA+AGG | 0.590231 | 8.3:-10896824 | MS.gene060336:CDS |
| GAAACATTACAAATAGGAGA+AGG | 0.594509 | 8.3:-10895986 | MS.gene060336:CDS |
| CTACTTGGCTATATTGACAA+AGG | 0.595946 | 8.3:-10895323 | MS.gene060336:CDS |
| ACCTGCATACAGATGCAGAT+AGG | 0.597190 | 8.3:+10894956 | None:intergenic |
| ACTCTTCGAGAACATTTGGA+TGG | 0.607314 | 8.3:-10895260 | MS.gene060336:intron |
| TAGCTTTAGAAACCTGACTC+AGG | 0.608297 | 8.3:+10896023 | None:intergenic |
| ATTGCAATTGATGTTGCACA+TGG | 0.608631 | 8.3:-10894984 | MS.gene060336:CDS |
| CTATTGATGGCAGGTTTGCG+TGG | 0.612674 | 8.3:-10895038 | MS.gene060336:intron |
| ACATTACAAATAGGAGAAGG+AGG | 0.614749 | 8.3:-10895983 | MS.gene060336:CDS |
| ACCAAAGTGAAGGGAACAGT+CGG | 0.618057 | 8.3:-10894142 | MS.gene060336:CDS |
| TGGATGATTTCACATCCCGA+TGG | 0.626789 | 8.3:+10894257 | None:intergenic |
| AGAAACTGATGGTTCAAAGG+AGG | 0.644221 | 8.3:+10896141 | None:intergenic |
| TACAAGGCTCATTTAGACGA+TGG | 0.650447 | 8.3:-10895947 | MS.gene060336:CDS |
| TAGAAAACAAGGACAAACAA+CGG | 0.660958 | 8.3:+10896689 | None:intergenic |
| GGGATCTTATCAGAAACTGA+TGG | 0.663836 | 8.3:+10896130 | None:intergenic |
| TATAGCCAAGTAGCTTCACA+AGG | 0.665872 | 8.3:+10895333 | None:intergenic |
| GAGAATCTTGACGGACTAGG+TGG | 0.679579 | 8.3:+10896088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGCATAATAAATATTAAAA+GGG | + | chr8.3:10895927-10895946 | None:intergenic | 10.0% |
| !! | TTTGCATAATAAATATTAAA+AGG | + | chr8.3:10895928-10895947 | None:intergenic | 10.0% |
| !!! | ATCATTGATATTTTTTTATT+AGG | - | chr8.3:10896145-10896164 | MS.gene060336:CDS | 10.0% |
| !! | ACAATATTTGTATTCAAATA+TGG | - | chr8.3:10895633-10895652 | MS.gene060336:intron | 15.0% |
| !! | TTTAATACATATACAAACAA+AGG | - | chr8.3:10895134-10895153 | MS.gene060336:intron | 15.0% |
| !!! | TTTTATAAATGAAAACTGTT+TGG | + | chr8.3:10894331-10894350 | None:intergenic | 15.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr8.3:10895091-10895110 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr8.3:10895093-10895112 | None:intergenic | 20.0% |
| !! | ACAATGGAAACTAAAAATTA+AGG | + | chr8.3:10894617-10894636 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr8.3:10895092-10895111 | None:intergenic | 20.0% |
| !! | CAATGGAAACTAAAAATTAA+GGG | + | chr8.3:10894616-10894635 | None:intergenic | 20.0% |
| !! | TTCCCTATAATTTATGAAAA+CGG | + | chr8.3:10894518-10894537 | None:intergenic | 20.0% |
| !!! | AATCCGTTTTCATAAATTAT+AGG | - | chr8.3:10894512-10894531 | MS.gene060336:intron | 20.0% |
| !!! | ATCCGTTTTCATAAATTATA+GGG | - | chr8.3:10894513-10894532 | MS.gene060336:intron | 20.0% |
| !!! | GTAATGTTTCTGAAAAATTA+CGG | + | chr8.3:10894854-10894873 | None:intergenic | 20.0% |
| !!! | TAATGTTTCTGAAAAATTAC+GGG | + | chr8.3:10894853-10894872 | None:intergenic | 20.0% |
| !!! | TTAAGCTTTTGACTTTTTTT+TGG | - | chr8.3:10896170-10896189 | MS.gene060336:intron | 20.0% |
| !!! | TTTTCAGAAACATTACAAAT+AGG | - | chr8.3:10894858-10894877 | MS.gene060336:intron | 20.0% |
| ! | AAGAAATGTGAAAAAAGCAA+AGG | - | chr8.3:10895218-10895237 | MS.gene060336:intron | 25.0% |
| ! | AATCAAACAACATCTAATTC+CGG | + | chr8.3:10896082-10896101 | None:intergenic | 25.0% |
| ! | AGAAAAACAAATTATCCATC+GGG | - | chr8.3:10896578-10896597 | MS.gene060336:intron | 25.0% |
| ! | AGAAATGTGAAAAAAGCAAA+GGG | - | chr8.3:10895219-10895238 | MS.gene060336:intron | 25.0% |
| ! | AGATTGTACTTTATTACCTT+AGG | - | chr8.3:10894292-10894311 | MS.gene060336:intron | 25.0% |
| ! | ATCAATAGCAAAACGATATT+CGG | + | chr8.3:10895800-10895819 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr8.3:10895045-10895064 | None:intergenic | 25.0% |
| ! | ATGTGAGTAGTATTAATTAG+AGG | - | chr8.3:10896401-10896420 | MS.gene060336:intron | 25.0% |
| ! | CAGAAAAACAAATTATCCAT+CGG | - | chr8.3:10896577-10896596 | MS.gene060336:intron | 25.0% |
| ! | CAGTCTATTAACTAAACATT+AGG | - | chr8.3:10896111-10896130 | MS.gene060336:CDS | 25.0% |
| ! | GAATACACAATACTTGATAA+GGG | + | chr8.3:10896341-10896360 | None:intergenic | 25.0% |
| ! | GACAAATATTAGACATCAAT+TGG | + | chr8.3:10896546-10896565 | None:intergenic | 25.0% |
| ! | GATTGTACTTTATTACCTTA+GGG | - | chr8.3:10894293-10894312 | MS.gene060336:intron | 25.0% |
| ! | GGACAAAAATAAAGTCAAAT+GGG | + | chr8.3:10895009-10895028 | None:intergenic | 25.0% |
| ! | TAAAGGAATTAAGGAGTTAA+AGG | + | chr8.3:10895746-10895765 | None:intergenic | 25.0% |
| ! | TACAAACAAAGGACAATATA+TGG | - | chr8.3:10895145-10895164 | MS.gene060336:intron | 25.0% |
| ! | TCAAATAGATCAGTTATTGT+GGG | + | chr8.3:10896244-10896263 | None:intergenic | 25.0% |
| ! | TGAATACACAATACTTGATA+AGG | + | chr8.3:10896342-10896361 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr8.3:10895044-10895063 | None:intergenic | 25.0% |
| ! | TGTGAGTAGTATTAATTAGA+GGG | - | chr8.3:10896402-10896421 | MS.gene060336:intron | 25.0% |
| ! | TTTAAAGAAACAACTCTAAC+CGG | - | chr8.3:10896060-10896079 | MS.gene060336:CDS | 25.0% |
| !! | ATGGTATGTTTTCATATACT+CGG | + | chr8.3:10896745-10896764 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | chr8.3:10895081-10895100 | None:intergenic | 25.0% |
| !!! | AAGTTCTGGATTCTTTTTAT+CGG | - | chr8.3:10895302-10895321 | MS.gene060336:CDS | 25.0% |
| !!! | TTCTTTTGTATCGATTTTTG+TGG | - | chr8.3:10896492-10896511 | MS.gene060336:intron | 25.0% |
| AAAAGTGACGTTTACTCATT+TGG | - | chr8.3:10896774-10896793 | MS.gene060336:CDS | 30.0% | |
| AAACGAACGTATCCTTATTA+CGG | - | chr8.3:10895550-10895569 | MS.gene060336:intron | 30.0% | |
| AAACTGTTTGGTAAGTAAAC+AGG | + | chr8.3:10894319-10894338 | None:intergenic | 30.0% | |
| AACATCAACTCACTTGAATT+TGG | + | chr8.3:10894233-10894252 | None:intergenic | 30.0% | |
| AAGCTTTGCAAATCCAAAAT+CGG | + | chr8.3:10896655-10896674 | None:intergenic | 30.0% | |
| ACATCAACTCACTTGAATTT+GGG | + | chr8.3:10894232-10894251 | None:intergenic | 30.0% | |
| ATCCAAGGTTAAAGGAATTA+AGG | + | chr8.3:10895755-10895774 | None:intergenic | 30.0% | |
| CAAAAATAAAGTCAAATGGG+TGG | + | chr8.3:10895006-10895025 | None:intergenic | 30.0% | |
| CAACATCAATTGCAATTTCA+AGG | + | chr8.3:10895862-10895881 | None:intergenic | 30.0% | |
| CTACTAGTTATCAAACTATG+AGG | + | chr8.3:10894274-10894293 | None:intergenic | 30.0% | |
| GAAACATTACAAATAGGAGA+AGG | - | chr8.3:10894864-10894883 | MS.gene060336:intron | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr8.3:10895043-10895062 | None:intergenic | 30.0% | |
| GGGACAAAAATAAAGTCAAA+TGG | + | chr8.3:10895010-10895029 | None:intergenic | 30.0% | |
| GTCAAATAGATCAGTTATTG+TGG | + | chr8.3:10896245-10896264 | None:intergenic | 30.0% | |
| GTTATCAAACTATGAGGTAA+AGG | + | chr8.3:10894268-10894287 | None:intergenic | 30.0% | |
| TAGAAAACAAGGACAAACAA+CGG | + | chr8.3:10894164-10894183 | None:intergenic | 30.0% | |
| TGAAAAGGGGTTTAGATTTA+GGG | + | chr8.3:10895030-10895049 | None:intergenic | 30.0% | |
| TTGAAAAGGGGTTTAGATTT+AGG | + | chr8.3:10895031-10895050 | None:intergenic | 30.0% | |
| ! | AAGGTTTCGATGATCAATTT+TGG | + | chr8.3:10895501-10895520 | None:intergenic | 30.0% |
| ! | AGTACTTCTACCAATTTTAG+TGG | + | chr8.3:10895387-10895406 | None:intergenic | 30.0% |
| ! | GAAGTACTTTCTTATCTCAA+TGG | - | chr8.3:10895399-10895418 | MS.gene060336:CDS | 30.0% |
| ! | TGCAGTGTACATTTTACATT+TGG | + | chr8.3:10895985-10896004 | None:intergenic | 30.0% |
| ! | TGGTATGTTTTCATATACTC+GGG | + | chr8.3:10896744-10896763 | None:intergenic | 30.0% |
| !! | ATCGAAAGTGTCATTCATTT+CGG | - | chr8.3:10896462-10896481 | MS.gene060336:intron | 30.0% |
| !! | TTGCTTTTAGAAATTCTGAC+TGG | - | chr8.3:10896801-10896820 | MS.gene060336:CDS | 30.0% |
| !!! | AATGAGTAAACGTCACTTTT+TGG | + | chr8.3:10896774-10896793 | None:intergenic | 30.0% |
| !!! | AGGAAGTATTAGATTTTAGG+GGG | + | chr8.3:10896217-10896236 | None:intergenic | 30.0% |
| !!! | GAATATCGTTTTGCTATTGA+TGG | - | chr8.3:10895799-10895818 | MS.gene060336:intron | 30.0% |
| !!! | GAGGAAGTATTAGATTTTAG+GGG | + | chr8.3:10896218-10896237 | None:intergenic | 30.0% |
| !!! | GGAGGAAGTATTAGATTTTA+GGG | + | chr8.3:10896219-10896238 | None:intergenic | 30.0% |
| !!! | TGTTTGTCCTTGTTTTCTAT+GGG | - | chr8.3:10894165-10894184 | MS.gene060336:CDS | 30.0% |
| !!! | TTGTATCGATTTTTGTGGAA+TGG | - | chr8.3:10896497-10896516 | MS.gene060336:intron | 30.0% |
| !!! | TTGTTTGTCCTTGTTTTCTA+TGG | - | chr8.3:10894164-10894183 | MS.gene060336:CDS | 30.0% |
| AACAATAATTCGACGTCACA+AGG | - | chr8.3:10894070-10894089 | MS.gene060336:CDS | 35.0% | |
| AATGTGAAAAAAGCAAAGGG+AGG | - | chr8.3:10895222-10895241 | MS.gene060336:intron | 35.0% | |
| ACACATTTCTACCAAAGTGA+AGG | - | chr8.3:10896698-10896717 | MS.gene060336:CDS | 35.0% | |
| ACATTACAAATAGGAGAAGG+AGG | - | chr8.3:10894867-10894886 | MS.gene060336:intron | 35.0% | |
| ACGACATGACTTAATCATAC+AGG | - | chr8.3:10895424-10895443 | MS.gene060336:intron | 35.0% | |
| ACTAGTCATTCAAAGGTAAG+AGG | + | chr8.3:10894654-10894673 | None:intergenic | 35.0% | |
| ATAGATCAGTTATTGTGGGA+CGG | + | chr8.3:10896240-10896259 | None:intergenic | 35.0% | |
| ATCAGAAACTGATGGTTCAA+AGG | + | chr8.3:10894715-10894734 | None:intergenic | 35.0% | |
| ATCAGTTTCTGATAAGATCC+CGG | - | chr8.3:10894722-10894741 | MS.gene060336:intron | 35.0% | |
| ATGGAGGGAGTAATGTTTAT+AGG | - | chr8.3:10896516-10896535 | MS.gene060336:intron | 35.0% | |
| ATTAAGGAGTTAAAGGTCCA+AGG | + | chr8.3:10895739-10895758 | None:intergenic | 35.0% | |
| ATTGCAATTGATGTTGCACA+TGG | - | chr8.3:10895866-10895885 | MS.gene060336:intron | 35.0% | |
| CAAATGGGTGGTTAGATATA+GGG | + | chr8.3:10894994-10895013 | None:intergenic | 35.0% | |
| CACATTTCTACCAAAGTGAA+GGG | - | chr8.3:10896699-10896718 | MS.gene060336:CDS | 35.0% | |
| CTACTTGGCTATATTGACAA+AGG | - | chr8.3:10895527-10895546 | MS.gene060336:intron | 35.0% | |
| CTATTGTGGACCACTAAAAT+TGG | - | chr8.3:10895374-10895393 | MS.gene060336:CDS | 35.0% | |
| CTCCTTAATTCCTTTAACCT+TGG | - | chr8.3:10895750-10895769 | MS.gene060336:intron | 35.0% | |
| CTTTGGTAGAAATGTGTGTA+TGG | + | chr8.3:10896695-10896714 | None:intergenic | 35.0% | |
| GTTCATCACTAGTCATTCAA+AGG | + | chr8.3:10894661-10894680 | None:intergenic | 35.0% | |
| TATCCTTATTACGGAGTTTG+TGG | - | chr8.3:10895559-10895578 | MS.gene060336:intron | 35.0% | |
| TCAAATGGGTGGTTAGATAT+AGG | + | chr8.3:10894995-10895014 | None:intergenic | 35.0% | |
| TTACTTAGCATTCAAGCTAC+TGG | + | chr8.3:10896365-10896384 | None:intergenic | 35.0% | |
| TTCTCTTCCCATAGAAAACA+AGG | + | chr8.3:10894175-10894194 | None:intergenic | 35.0% | |
| TTGAAGAGAAGATGAAAAGC+AGG | - | chr8.3:10894570-10894589 | MS.gene060336:intron | 35.0% | |
| TTTCTATGGGAAGAGAAGAA+AGG | - | chr8.3:10894178-10894197 | MS.gene060336:CDS | 35.0% | |
| ! | GATTTTGGATTTGCAAAGCT+TGG | - | chr8.3:10896654-10896673 | MS.gene060336:intron | 35.0% |
| ! | GGAAGTGCAATCTATAACAA+TGG | + | chr8.3:10894633-10894652 | None:intergenic | 35.0% |
| ! | GGTATGTTTTCATATACTCG+GGG | + | chr8.3:10896743-10896762 | None:intergenic | 35.0% |
| !! | ATCGATTTTTGTGGAATGGA+GGG | - | chr8.3:10896501-10896520 | MS.gene060336:intron | 35.0% |
| !! | TCGAAAGTGTCATTCATTTC+GGG | - | chr8.3:10896463-10896482 | MS.gene060336:intron | 35.0% |
| !! | TTCATTTTAAGTCGCTGACA+AGG | - | chr8.3:10894357-10894376 | MS.gene060336:intron | 35.0% |
| !!! | CGGAGGAAGTATTAGATTTT+AGG | + | chr8.3:10896220-10896239 | None:intergenic | 35.0% |
| !!! | GTGAACTGTTTTGACTATTG+TGG | - | chr8.3:10895360-10895379 | MS.gene060336:CDS | 35.0% |
| !!! | TATCGATTTTTGTGGAATGG+AGG | - | chr8.3:10896500-10896519 | MS.gene060336:intron | 35.0% |
| ACATTAGAGTGCGAAAGTTC+TGG | - | chr8.3:10895288-10895307 | MS.gene060336:CDS | 40.0% | |
| ACTCTTCGAGAACATTTGGA+TGG | - | chr8.3:10895590-10895609 | MS.gene060336:intron | 40.0% | |
| AGAAACTGATGGTTCAAAGG+AGG | + | chr8.3:10894712-10894731 | None:intergenic | 40.0% | |
| AGACAGACAGACAGATAGTT+AGG | - | chr8.3:10894424-10894443 | MS.gene060336:intron | 40.0% | |
| AGCAAAGGGAGGTTACATTA+AGG | - | chr8.3:10895233-10895252 | MS.gene060336:intron | 40.0% | |
| AGGTTTGCGTGGAAAAATTC+TGG | - | chr8.3:10895823-10895842 | MS.gene060336:intron | 40.0% | |
| ATTACATCTCAACCTGAGTC+AGG | - | chr8.3:10894815-10894834 | MS.gene060336:intron | 40.0% | |
| ATTACGGAGTTTGTGGCAAA+TGG | - | chr8.3:10895566-10895585 | MS.gene060336:intron | 40.0% | |
| GACAGACAGACAGATAGTTA+GGG | - | chr8.3:10894425-10894444 | MS.gene060336:intron | 40.0% | |
| GCAAAGGGAGGTTACATTAA+GGG | - | chr8.3:10895234-10895253 | MS.gene060336:intron | 40.0% | |
| GCTTTCGGTTAGAAGAATGT+TGG | + | chr8.3:10896616-10896635 | None:intergenic | 40.0% | |
| GGAGACATTGAGAATCTTGA+CGG | + | chr8.3:10894774-10894793 | None:intergenic | 40.0% | |
| GGCTGTAAAACGTGCAAAAA+GGG | - | chr8.3:10894935-10894954 | MS.gene060336:intron | 40.0% | |
| GGGATCTTATCAGAAACTGA+TGG | + | chr8.3:10894723-10894742 | None:intergenic | 40.0% | |
| TACAAGGCTCATTTAGACGA+TGG | - | chr8.3:10894903-10894922 | MS.gene060336:intron | 40.0% | |
| TATAGCCAAGTAGCTTCACA+AGG | + | chr8.3:10895520-10895539 | None:intergenic | 40.0% | |
| TCGGCATCAGTTTCCATATA+GGG | + | chr8.3:10895781-10895800 | None:intergenic | 40.0% | |
| TGGCTGTAAAACGTGCAAAA+AGG | - | chr8.3:10894934-10894953 | MS.gene060336:intron | 40.0% | |
| TGGTACTCTTCGAGAACATT+TGG | - | chr8.3:10895586-10895605 | MS.gene060336:intron | 40.0% | |
| TGTGTATGGTCGTTGTTTAC+AGG | + | chr8.3:10896681-10896700 | None:intergenic | 40.0% | |
| TTCGGCATCAGTTTCCATAT+AGG | + | chr8.3:10895782-10895801 | None:intergenic | 40.0% | |
| TTGCCACAAACTCCGTAATA+AGG | + | chr8.3:10895565-10895584 | None:intergenic | 40.0% | |
| TTTGCTCTTGCAGTGGAATT+AGG | - | chr8.3:10894684-10894703 | MS.gene060336:intron | 40.0% | |
| ! | CAAATAGGAGAAGGAGGTTT+TGG | - | chr8.3:10894873-10894892 | MS.gene060336:intron | 40.0% |
| ! | GAACAATTTTGCTCTTGCAG+TGG | - | chr8.3:10894677-10894696 | MS.gene060336:intron | 40.0% |
| ! | TACTTTAGCTCGCATGCTTT+CGG | + | chr8.3:10896631-10896650 | None:intergenic | 40.0% |
| !! | AGCCAAGTTGGAATTTTTGC+GGG | - | chr8.3:10894115-10894134 | MS.gene060336:CDS | 40.0% |
| !! | ATTGAGAATCTTGACGGACT+AGG | + | chr8.3:10894768-10894787 | None:intergenic | 40.0% |
| !! | CAGCCAAGTTGGAATTTTTG+CGG | - | chr8.3:10894114-10894133 | MS.gene060336:CDS | 40.0% |
| !! | TAGCTTTAGAAACCTGACTC+AGG | + | chr8.3:10894830-10894849 | None:intergenic | 40.0% |
| !! | TTCTCATGCTGTTCTGGAAA+AGG | - | chr8.3:10894205-10894224 | MS.gene060336:CDS | 40.0% |
| !!! | AGGTTTTGGAACTGTCTACA+AGG | - | chr8.3:10894887-10894906 | MS.gene060336:intron | 40.0% |
| !!! | ATCGTTTTGCTATTGATGGC+AGG | - | chr8.3:10895803-10895822 | MS.gene060336:intron | 40.0% |
| AAGGTCCAAGGTTTGAATCC+TGG | + | chr8.3:10895727-10895746 | None:intergenic | 45.0% | |
| AAGGTTTGAATCCTGGGCAA+GGG | + | chr8.3:10895720-10895739 | None:intergenic | 45.0% | |
| ACCAAAGTGAAGGGAACAGT+CGG | - | chr8.3:10896708-10896727 | MS.gene060336:CDS | 45.0% | |
| ACCTATCTGCATCTGTATGC+AGG | - | chr8.3:10895893-10895912 | MS.gene060336:intron | 45.0% | |
| ACCTGCATACAGATGCAGAT+AGG | + | chr8.3:10895897-10895916 | None:intergenic | 45.0% | |
| AGGGAGGTTACATTAAGGGA+CGG | - | chr8.3:10895238-10895257 | MS.gene060336:intron | 45.0% | |
| AGGTCCAAGGTTTGAATCCT+GGG | + | chr8.3:10895726-10895745 | None:intergenic | 45.0% | |
| AGGTTACATTAAGGGACGGA+GGG | - | chr8.3:10895242-10895261 | MS.gene060336:intron | 45.0% | |
| AGTTTCCTTCCTGCCTTTGA+AGG | + | chr8.3:10894034-10894053 | None:intergenic | 45.0% | |
| ATTTGCCTTCAAAGGCAGGA+AGG | - | chr8.3:10894026-10894045 | MS.gene060336:CDS | 45.0% | |
| CAAGTGTCAAACAGCCAAGT+TGG | - | chr8.3:10894103-10894122 | MS.gene060336:CDS | 45.0% | |
| CACCCGCAAAAATTCCAACT+TGG | + | chr8.3:10894120-10894139 | None:intergenic | 45.0% | |
| CGAAACCTTGTGAAGCTACT+TGG | - | chr8.3:10895512-10895531 | MS.gene060336:intron | 45.0% | |
| CGGCATCAGTTTCCATATAG+GGG | + | chr8.3:10895780-10895799 | None:intergenic | 45.0% | |
| GCATCAGTTTCCATATAGGG+GGG | + | chr8.3:10895778-10895797 | None:intergenic | 45.0% | |
| GGCATCAGTTTCCATATAGG+GGG | + | chr8.3:10895779-10895798 | None:intergenic | 45.0% | |
| TGGATGATTTCACATCCCGA+TGG | + | chr8.3:10896596-10896615 | None:intergenic | 45.0% | |
| TGGGTGGTTAGATATAGGGA+CGG | + | chr8.3:10894990-10895009 | None:intergenic | 45.0% | |
| TGGTAAGTAAACAGGCCCTA+AGG | + | chr8.3:10894311-10894330 | None:intergenic | 45.0% | |
| TGGTTAGATATAGGGACGGA+GGG | + | chr8.3:10894986-10895005 | None:intergenic | 45.0% | |
| ! | GACTGAAGTCTGCTGAGTTT+TGG | + | chr8.3:10894795-10894814 | None:intergenic | 45.0% |
| ! | TAGTATTTTCTCCCTTGCCC+AGG | - | chr8.3:10895706-10895725 | MS.gene060336:intron | 45.0% |
| !! | CAAGTTGGAATTTTTGCGGG+TGG | - | chr8.3:10894118-10894137 | MS.gene060336:CDS | 45.0% |
| !! | CGAGCTAAAGTAGCCGATTT+TGG | - | chr8.3:10896639-10896658 | MS.gene060336:intron | 45.0% |
| !!! | CGTCACTTTTTGGAGTGAGA+TGG | + | chr8.3:10896764-10896783 | None:intergenic | 45.0% |
| AACCTTGGATCCCCCCTATA+TGG | - | chr8.3:10895765-10895784 | MS.gene060336:intron | 50.0% | |
| CAAGGTTTGAATCCTGGGCA+AGG | + | chr8.3:10895721-10895740 | None:intergenic | 50.0% | |
| CAGCAGTGAAGTCGAACTTC+TGG | - | chr8.3:10895475-10895494 | MS.gene060336:intron | 50.0% | |
| CTTGCCCAGGATTCAAACCT+TGG | - | chr8.3:10895719-10895738 | MS.gene060336:intron | 50.0% | |
| GAAGGGAACAGTCGGCTATT+TGG | - | chr8.3:10896716-10896735 | MS.gene060336:CDS | 50.0% | |
| GAGGTTACATTAAGGGACGG+AGG | - | chr8.3:10895241-10895260 | MS.gene060336:intron | 50.0% | |
| GATCAGTTATTGTGGGACGG+AGG | + | chr8.3:10896237-10896256 | None:intergenic | 50.0% | |
| GGCAACTTCTCATGCTGTTC+TGG | - | chr8.3:10894199-10894218 | MS.gene060336:CDS | 50.0% | |
| GTGGTTAGATATAGGGACGG+AGG | + | chr8.3:10894987-10895006 | None:intergenic | 50.0% | |
| TAGGGGGGATCCAAGGTTAA+AGG | + | chr8.3:10895763-10895782 | None:intergenic | 50.0% | |
| TTCCATATAGGGGGGATCCA+AGG | + | chr8.3:10895770-10895789 | None:intergenic | 50.0% | |
| TTTAGACGATGGCCTGGTTG+TGG | - | chr8.3:10894914-10894933 | MS.gene060336:intron | 50.0% | |
| ! | CACGTTTTACAGCCACAACC+AGG | + | chr8.3:10894929-10894948 | None:intergenic | 50.0% |
| ! | CTATTGATGGCAGGTTTGCG+TGG | - | chr8.3:10895812-10895831 | MS.gene060336:intron | 50.0% |
| !! | GAGAATCTTGACGGACTAGG+TGG | + | chr8.3:10894765-10894784 | None:intergenic | 50.0% |
| !! | TTTTGCGGGTGGAGCTTTGT+TGG | - | chr8.3:10894129-10894148 | MS.gene060336:CDS | 50.0% |
| GCCGACTGTTCCCTTCACTT+TGG | + | chr8.3:10896712-10896731 | None:intergenic | 55.0% | |
| GGCTCATTTAGACGATGGCC+TGG | - | chr8.3:10894908-10894927 | MS.gene060336:intron | 55.0% | |
| ! | AGATCCCGGCTAGTCCACTT+CGG | - | chr8.3:10894736-10894755 | MS.gene060336:intron | 55.0% |
| ! | TTTTCAGCTCCACAGGGCGA+CGG | + | chr8.3:10896827-10896846 | None:intergenic | 55.0% |
| ! | GATCCCGGCTAGTCCACTTC+GGG | - | chr8.3:10894737-10894756 | MS.gene060336:intron | 60.0% |
| GGACTAGGTGGCACCCGAAG+TGG | + | chr8.3:10894753-10894772 | None:intergenic | 65.0% | |
| !! | GCACCCGAAGTGGACTAGCC+GGG | + | chr8.3:10894743-10894762 | None:intergenic | 65.0% |
| !! | GGCACCCGAAGTGGACTAGC+CGG | + | chr8.3:10894744-10894763 | None:intergenic | 65.0% |
| ! | TCTGACTGGCCGTCGCCCTG+TGG | - | chr8.3:10896815-10896834 | MS.gene060336:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 10894023 | 10896849 | 10894023 | ID=MS.gene060336 |
| chr8.3 | mRNA | 10894023 | 10896849 | 10894023 | ID=MS.gene060336.t1;Parent=MS.gene060336 |
| chr8.3 | exon | 10896658 | 10896849 | 10896658 | ID=MS.gene060336.t1.exon1;Parent=MS.gene060336.t1 |
| chr8.3 | CDS | 10896658 | 10896849 | 10896658 | ID=cds.MS.gene060336.t1;Parent=MS.gene060336.t1 |
| chr8.3 | exon | 10895916 | 10896175 | 10895916 | ID=MS.gene060336.t1.exon2;Parent=MS.gene060336.t1 |
| chr8.3 | CDS | 10895916 | 10896175 | 10895916 | ID=cds.MS.gene060336.t1;Parent=MS.gene060336.t1 |
| chr8.3 | exon | 10895261 | 10895426 | 10895261 | ID=MS.gene060336.t1.exon3;Parent=MS.gene060336.t1 |
| chr8.3 | CDS | 10895261 | 10895426 | 10895261 | ID=cds.MS.gene060336.t1;Parent=MS.gene060336.t1 |
| chr8.3 | exon | 10894958 | 10895047 | 10894958 | ID=MS.gene060336.t1.exon4;Parent=MS.gene060336.t1 |
| chr8.3 | CDS | 10894958 | 10895047 | 10894958 | ID=cds.MS.gene060336.t1;Parent=MS.gene060336.t1 |
| chr8.3 | exon | 10894023 | 10894292 | 10894023 | ID=MS.gene060336.t1.exon5;Parent=MS.gene060336.t1 |
| chr8.3 | CDS | 10894023 | 10894292 | 10894023 | ID=cds.MS.gene060336.t1;Parent=MS.gene060336.t1 |
| Gene Sequence |
| Protein sequence |
