Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49767.t1 | XP_013446935.1 | 85.4 | 219 | 32 | 0 | 1 | 219 | 1 | 219 | 1.80E-107 | 398.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49767.t1 | Q67YC9 | 71.1 | 149 | 42 | 1 | 37 | 185 | 36 | 183 | 2.3e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49767.t1 | A0A072TU64 | 85.4 | 219 | 32 | 0 | 1 | 219 | 1 | 219 | 1.3e-107 | 398.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene49767 | 0.822975 | 1.78E-53 | -1.69E-46 |
| MS.gene049427 | MS.gene49767 | 0.80789 | 4.05E-50 | -1.69E-46 |
| MS.gene049614 | MS.gene49767 | 0.823022 | 1.73E-53 | -1.69E-46 |
| MS.gene049760 | MS.gene49767 | 0.812434 | 4.25E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene49767 | 0.829526 | 4.90E-55 | -1.69E-46 |
| MS.gene050099 | MS.gene49767 | 0.822668 | 2.09E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene49767 | 0.824762 | 6.77E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene49767 | 0.814037 | 1.89E-51 | -1.69E-46 |
| MS.gene050505 | MS.gene49767 | -0.806867 | 6.68E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene49767 | 0.816749 | 4.71E-52 | -1.69E-46 |
| MS.gene050770 | MS.gene49767 | 0.82079 | 5.69E-53 | -1.69E-46 |
| MS.gene050781 | MS.gene49767 | 0.802094 | 6.60E-49 | -1.69E-46 |
| MS.gene050783 | MS.gene49767 | 0.862559 | 4.65E-64 | -1.69E-46 |
| MS.gene050812 | MS.gene49767 | 0.807229 | 5.60E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene49767 | 0.854601 | 1.10E-61 | -1.69E-46 |
| MS.gene051171 | MS.gene49767 | 0.846949 | 1.57E-59 | -1.69E-46 |
| MS.gene051242 | MS.gene49767 | 0.848112 | 7.54E-60 | -1.69E-46 |
| MS.gene051244 | MS.gene49767 | 0.846469 | 2.13E-59 | -1.69E-46 |
| MS.gene051471 | MS.gene49767 | 0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene051582 | MS.gene49767 | 0.815942 | 7.14E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene49767 | 0.850051 | 2.18E-60 | -1.69E-46 |
| MS.gene052326 | MS.gene49767 | 0.844234 | 8.58E-59 | -1.69E-46 |
| MS.gene053107 | MS.gene49767 | 0.82918 | 5.95E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene49767 | 0.821263 | 4.43E-53 | -1.69E-46 |
| MS.gene053971 | MS.gene49767 | 0.836683 | 8.10E-57 | -1.69E-46 |
| MS.gene054376 | MS.gene49767 | 0.822296 | 2.56E-53 | -1.69E-46 |
| MS.gene05455 | MS.gene49767 | 0.80519 | 1.50E-49 | -1.69E-46 |
| MS.gene054802 | MS.gene49767 | 0.850459 | 1.67E-60 | -1.69E-46 |
| MS.gene054803 | MS.gene49767 | 0.847452 | 1.15E-59 | -1.69E-46 |
| MS.gene054804 | MS.gene49767 | 0.850909 | 1.25E-60 | -1.69E-46 |
| MS.gene055254 | MS.gene49767 | 0.805247 | 1.46E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene49767 | 0.82689 | 2.12E-54 | -1.69E-46 |
| MS.gene055390 | MS.gene49767 | 0.805635 | 1.21E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene49767 | 0.834288 | 3.27E-56 | -1.69E-46 |
| MS.gene055499 | MS.gene49767 | 0.825753 | 3.95E-54 | -1.69E-46 |
| MS.gene055971 | MS.gene49767 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene056451 | MS.gene49767 | 0.808173 | 3.53E-50 | -1.69E-46 |
| MS.gene056452 | MS.gene49767 | 0.841298 | 5.17E-58 | -1.69E-46 |
| MS.gene056612 | MS.gene49767 | 0.808455 | 3.07E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene49767 | 0.829377 | 5.32E-55 | -1.69E-46 |
| MS.gene057011 | MS.gene49767 | 0.81984 | 9.40E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene49767 | 0.820519 | 6.57E-53 | -1.69E-46 |
| MS.gene057196 | MS.gene49767 | 0.802821 | 4.68E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene49767 | 0.809257 | 2.07E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene49767 | 0.801089 | 1.06E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene49767 | 0.801572 | 8.45E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene49767 | 0.845521 | 3.86E-59 | -1.69E-46 |
| MS.gene058276 | MS.gene49767 | 0.832957 | 7.03E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene49767 | 0.82204 | 2.93E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene49767 | 0.833492 | 5.17E-56 | -1.69E-46 |
| MS.gene058746 | MS.gene49767 | 0.814389 | 1.58E-51 | -1.69E-46 |
| MS.gene059326 | MS.gene49767 | 0.807697 | 4.45E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene49767 | 0.81223 | 4.71E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene49767 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene059858 | MS.gene49767 | 0.803308 | 3.71E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene49767 | 0.828742 | 7.59E-55 | -1.69E-46 |
| MS.gene06090 | MS.gene49767 | 0.801176 | 1.02E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene49767 | 0.804162 | 2.47E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49767.t1 | MTR_8g096110 | 94.977 | 219 | 11 | 0 | 1 | 219 | 1 | 219 | 1.56e-151 | 419 |
| MS.gene49767.t1 | MTR_8g096080 | 80.180 | 222 | 42 | 1 | 1 | 220 | 1 | 222 | 2.65e-133 | 374 |
| MS.gene49767.t1 | MTR_8g096100 | 75.000 | 212 | 52 | 1 | 1 | 211 | 1 | 212 | 5.75e-112 | 319 |
| MS.gene49767.t1 | MTR_3g098490 | 67.553 | 188 | 54 | 3 | 1 | 185 | 1 | 184 | 6.91e-91 | 266 |
| MS.gene49767.t1 | MTR_3g098500 | 63.492 | 189 | 66 | 2 | 1 | 186 | 7 | 195 | 7.50e-84 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49767.t1 | AT3G23760 | 68.452 | 168 | 52 | 1 | 22 | 189 | 26 | 192 | 1.76e-87 | 256 |
| MS.gene49767.t1 | AT4G14100 | 63.842 | 177 | 63 | 1 | 9 | 185 | 8 | 183 | 2.45e-86 | 254 |
Find 45 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATGGTGCTAACTATT+TGG | 0.188411 | 4.4:-7278395 | MS.gene49767:CDS |
| TCCGGCCACGGCGTTGGAAT+TGG | 0.214822 | 4.4:+7278646 | None:intergenic |
| CTTCGTCCCAATTGGCTTGA+TGG | 0.251154 | 4.4:-7278409 | MS.gene49767:CDS |
| CTTGATGGTGCTAACTATTT+GGG | 0.286568 | 4.4:-7278394 | MS.gene49767:CDS |
| AATGTTGAAGTTGCGTCCTT+TGG | 0.308667 | 4.4:+7278552 | None:intergenic |
| AGCAGCTTCTAAATCTAATA+AGG | 0.316448 | 4.4:+7276346 | None:intergenic |
| TGAGAACACCAAGCTGATAT+TGG | 0.332979 | 4.4:+7278527 | None:intergenic |
| CCGGCCACGGCGTTGGAATT+GGG | 0.346904 | 4.4:+7278647 | None:intergenic |
| TGCCGCTTCTGTTTATGAAT+AGG | 0.369449 | 4.4:+7278608 | None:intergenic |
| TGGGTATTCTTCGTCCCAAT+TGG | 0.401532 | 4.4:-7278417 | MS.gene49767:CDS |
| TTCTCAAATACGACCTTGAA+TGG | 0.403268 | 4.4:-7278510 | MS.gene49767:CDS |
| ATGTTGAAGTTGCGTCCTTT+GGG | 0.414721 | 4.4:+7278553 | None:intergenic |
| GTTAGCACCATCAAGCCAAT+TGG | 0.414933 | 4.4:+7278402 | None:intergenic |
| GAGTAGAAGATCCACTTAAC+AGG | 0.446273 | 4.4:+7278286 | None:intergenic |
| AGGACTGAATGAAACTGTTC+CGG | 0.452659 | 4.4:+7278628 | None:intergenic |
| AGGTGCCATTGTTCCATTCA+AGG | 0.452905 | 4.4:+7278497 | None:intergenic |
| CCCAATTCCAACGCCGTGGC+CGG | 0.458323 | 4.4:-7278647 | MS.gene49767:CDS |
| AACTGTTCCGGCCACGGCGT+TGG | 0.477557 | 4.4:+7278640 | None:intergenic |
| AACCAAAGATACAGAAAAGA+AGG | 0.480532 | 4.4:-7276376 | MS.gene49767:CDS |
| ATTTGAGGTTGGTGCAGTGC+TGG | 0.481969 | 4.4:-7276450 | MS.gene49767:CDS |
| ATGTTGAGAGATGGAAGAAG+AGG | 0.484687 | 4.4:+7278683 | None:intergenic |
| TTAGAAGCTGCTGTTGGTGG+TGG | 0.492112 | 4.4:-7276335 | MS.gene49767:CDS |
| TCACTAAAAGACCTGTTAAG+TGG | 0.510005 | 4.4:-7278297 | MS.gene49767:CDS |
| TTAGCACCATCAAGCCAATT+GGG | 0.514645 | 4.4:+7278403 | None:intergenic |
| AAACCGACCTATGGTACGAT+TGG | 0.517325 | 4.4:-7278576 | MS.gene49767:CDS |
| TGCTCATGTGATGACATTTG+AGG | 0.519002 | 4.4:-7276465 | MS.gene49767:CDS |
| AACATTATCCAATATCAGCT+TGG | 0.519327 | 4.4:-7278535 | MS.gene49767:CDS |
| GATTTAGAAGCTGCTGTTGG+TGG | 0.522659 | 4.4:-7276338 | MS.gene49767:CDS |
| GAATGAAACTGTTCCGGCCA+CGG | 0.527864 | 4.4:+7278634 | None:intergenic |
| GTTAAGTGGATCTTCTACTC+CGG | 0.536632 | 4.4:-7278283 | MS.gene49767:intron |
| CTATGGTACGATTGGCCCAA+AGG | 0.539339 | 4.4:-7278568 | MS.gene49767:CDS |
| CTTTGGGCCAATCGTACCAT+AGG | 0.551684 | 4.4:+7278569 | None:intergenic |
| AGGGTCGAGAGTATAGAGAA+AGG | 0.556535 | 4.4:+7278474 | None:intergenic |
| GCTGGACGATGAGCATTGGC+AGG | 0.560605 | 4.4:-7276432 | MS.gene49767:CDS |
| AATACGTTCTTCTGTGGCAG+AGG | 0.569209 | 4.4:+7278726 | None:intergenic |
| TTAGATTTAGAAGCTGCTGT+TGG | 0.576944 | 4.4:-7276341 | MS.gene49767:CDS |
| CATGTGATGACATTTGAGGT+TGG | 0.580197 | 4.4:-7276461 | MS.gene49767:CDS |
| GGGCCAATCGTACCATAGGT+CGG | 0.598624 | 4.4:+7278573 | None:intergenic |
| GTCCTATTCATAAACAGAAG+CGG | 0.600560 | 4.4:-7278610 | MS.gene49767:CDS |
| GCCTCACTAAAACAATAGAC+AGG | 0.605065 | 4.4:+7276407 | None:intergenic |
| TACGACCTTGAATGGAACAA+TGG | 0.609959 | 4.4:-7278502 | MS.gene49767:CDS |
| CAGTGCTGGACGATGAGCAT+TGG | 0.613309 | 4.4:-7276436 | MS.gene49767:CDS |
| CAAACAAATACGTTCTTCTG+TGG | 0.631984 | 4.4:+7278720 | None:intergenic |
| ACGACCCAATTCCAACGCCG+TGG | 0.671513 | 4.4:-7278651 | MS.gene49767:CDS |
| GTCGAGAGTATAGAGAAAGG+AGG | 0.699354 | 4.4:+7278477 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAAAAAATTGAAC+AGG | - | chr4.4:7277782-7277801 | MS.gene49767:intron | 10.0% |
| !! | AACATTTGTCAATAAAAAAA+AGG | - | chr4.4:7276991-7277010 | MS.gene49767:intron | 15.0% |
| !! | AACCAAATATATGTTGAAAA+TGG | + | chr4.4:7277585-7277604 | None:intergenic | 20.0% |
| !! | ATCAAGATTTAATAGAATGT+TGG | + | chr4.4:7277950-7277969 | None:intergenic | 20.0% |
| !! | TGATTGATAAATTGTTAAGT+TGG | + | chr4.4:7277819-7277838 | None:intergenic | 20.0% |
| !!! | AACCATTTTCAACATATATT+TGG | - | chr4.4:7277580-7277599 | MS.gene49767:intron | 20.0% |
| !!! | AAGTTCTGAAATTTCAAATT+GGG | - | chr4.4:7278074-7278093 | MS.gene49767:intron | 20.0% |
| !!! | ATAAAAGCATAATAACTAAC+CGG | + | chr4.4:7276770-7276789 | None:intergenic | 20.0% |
| !!! | ATACTTTTCTTTGTAATGTT+TGG | - | chr4.4:7276674-7276693 | MS.gene49767:intron | 20.0% |
| !!! | TACTTTTCTTTGTAATGTTT+GGG | - | chr4.4:7276675-7276694 | MS.gene49767:intron | 20.0% |
| !!! | TGATTTTATTTGGTATTATG+AGG | - | chr4.4:7276705-7276724 | MS.gene49767:intron | 20.0% |
| !!! | TTTTTCTTCATTCTTTTTCT+TGG | - | chr4.4:7277607-7277626 | MS.gene49767:intron | 20.0% |
| ! | ACCTAAAAAAAACTATGTGT+TGG | - | chr4.4:7278355-7278374 | MS.gene49767:CDS | 25.0% |
| ! | AGTTTACGATTATCAAATTG+GGG | - | chr4.4:7278106-7278125 | MS.gene49767:intron | 25.0% |
| ! | GAAACCATTCAAAAACTAAA+AGG | + | chr4.4:7277095-7277114 | None:intergenic | 25.0% |
| ! | GAAACGATTCAAAAACTAAA+AGG | - | chr4.4:7278255-7278274 | MS.gene49767:intron | 25.0% |
| ! | GAAACTTAAAGGATGAATTT+GGG | - | chr4.4:7278295-7278314 | MS.gene49767:CDS | 25.0% |
| ! | GAGTTTACGATTATCAAATT+GGG | - | chr4.4:7278105-7278124 | MS.gene49767:intron | 25.0% |
| ! | GGGAAAAACTAAAAACTTAA+AGG | - | chr4.4:7278315-7278334 | MS.gene49767:CDS | 25.0% |
| ! | GGGAAAAACTAAAAACTTAA+AGG | + | chr4.4:7278334-7278315 | None:intergenic | 25.0% |
| ! | TCAATTAGGGTTATGAAATT+GGG | - | chr4.4:7277314-7277333 | MS.gene49767:intron | 25.0% |
| ! | TGAAACTTAAAGGATGAATT+TGG | - | chr4.4:7278294-7278313 | MS.gene49767:CDS | 25.0% |
| ! | TGAGTGTAATTATATATGTC+AGG | - | chr4.4:7276879-7276898 | MS.gene49767:intron | 25.0% |
| ! | TGCTTCATAGTAAATTAACA+TGG | + | chr4.4:7276809-7276828 | None:intergenic | 25.0% |
| ! | TTCAATTAGGGTTATGAAAT+TGG | - | chr4.4:7277313-7277332 | MS.gene49767:intron | 25.0% |
| !! | TTTTGCAAGTGTGATTAAAA+GGG | + | chr4.4:7276579-7276598 | None:intergenic | 25.0% |
| !! | TTTTTGCAAGTGTGATTAAA+AGG | + | chr4.4:7276580-7276599 | None:intergenic | 25.0% |
| !!! | AAAAAGCTTCATTTTGATGT+GGG | - | chr4.4:7276595-7276614 | MS.gene49767:intron | 25.0% |
| !!! | ACCAACACATAGTTTTTTTT+AGG | + | chr4.4:7278359-7278378 | None:intergenic | 25.0% |
| !!! | AGTTCTGAAATTTCAAATTG+GGG | - | chr4.4:7278075-7278094 | MS.gene49767:intron | 25.0% |
| !!! | GAAGTTCTGAAATTTCAAAT+TGG | - | chr4.4:7278073-7278092 | MS.gene49767:intron | 25.0% |
| AAAAACTAAAAGGACCTCTT+TGG | - | chr4.4:7278265-7278284 | MS.gene49767:intron | 30.0% | |
| AAAAACTAAAAGGACCTCTT+TGG | + | chr4.4:7278284-7278265 | None:intergenic | 30.0% | |
| AAAACTAAAAGGACCTCTTT+GGG | - | chr4.4:7278266-7278285 | MS.gene49767:intron | 30.0% | |
| AAAACTAAAAGGACCTCTTT+GGG | + | chr4.4:7278285-7278266 | None:intergenic | 30.0% | |
| AAAAGGTCAAATGCATCATT+AGG | - | chr4.4:7277008-7277027 | MS.gene49767:intron | 30.0% | |
| AACATTATCCAATATCAGCT+TGG | - | chr4.4:7276496-7276515 | MS.gene49767:intron | 30.0% | |
| AACCAAAGATACAGAAAAGA+AGG | - | chr4.4:7278655-7278674 | MS.gene49767:CDS | 30.0% | |
| AAGCCTGATATATGATATGA+TGG | - | chr4.4:7278523-7278542 | MS.gene49767:CDS | 30.0% | |
| AATTAGGGTTATGAAATTGG+GGG | - | chr4.4:7277316-7277335 | MS.gene49767:intron | 30.0% | |
| AATTCTCGTAACAAAGTAGA+TGG | + | chr4.4:7278014-7278033 | None:intergenic | 30.0% | |
| AATTTCAAATTGGGGAACAA+TGG | - | chr4.4:7278083-7278102 | MS.gene49767:intron | 30.0% | |
| AGCAGCTTCTAAATCTAATA+AGG | + | chr4.4:7278688-7278707 | None:intergenic | 30.0% | |
| ATCTACTTTGTTACGAGAAT+TGG | - | chr4.4:7278013-7278032 | MS.gene49767:intron | 30.0% | |
| ATTCTCGTAACAAAGTAGAT+GGG | + | chr4.4:7278013-7278032 | None:intergenic | 30.0% | |
| ATTTGTGTCATCACTACAAT+AGG | + | chr4.4:7277533-7277552 | None:intergenic | 30.0% | |
| CAACCATCATATCATATATC+AGG | + | chr4.4:7278529-7278548 | None:intergenic | 30.0% | |
| CAATTAGGGTTATGAAATTG+GGG | - | chr4.4:7277315-7277334 | MS.gene49767:intron | 30.0% | |
| CTGATATATGATATGATGGT+TGG | - | chr4.4:7278527-7278546 | MS.gene49767:CDS | 30.0% | |
| GGAGTTTACGATTATCAAAT+TGG | - | chr4.4:7278104-7278123 | MS.gene49767:intron | 30.0% | |
| TAACATGGTACATCAGTTAA+AGG | + | chr4.4:7276794-7276813 | None:intergenic | 30.0% | |
| TATCAAATTGGGGAACAAAT+GGG | - | chr4.4:7278116-7278135 | MS.gene49767:intron | 30.0% | |
| TGATGTAATGTGTTGAATTG+TGG | + | chr4.4:7277422-7277441 | None:intergenic | 30.0% | |
| TGGTAATAATGAGCATTACA+AGG | + | chr4.4:7277640-7277659 | None:intergenic | 30.0% | |
| TTATCAAATTGGGGAACAAA+TGG | - | chr4.4:7278115-7278134 | MS.gene49767:intron | 30.0% | |
| TTTAGGTCAAATGCATCATT+AGG | + | chr4.4:7278342-7278361 | None:intergenic | 30.0% | |
| ! | GAAACTTAAAGGACGATTTT+GGG | + | chr4.4:7277055-7277074 | None:intergenic | 30.0% |
| ! | TGAAACTTAAAGGACGATTT+TGG | + | chr4.4:7277056-7277075 | None:intergenic | 30.0% |
| !! | CAAAAAGCTTCATTTTGATG+TGG | - | chr4.4:7276594-7276613 | MS.gene49767:intron | 30.0% |
| !! | GGGAGAAAGTTGATTTTATT+TGG | - | chr4.4:7276695-7276714 | MS.gene49767:intron | 30.0% |
| !! | TTAGTTGTGTTGATAGTGAT+TGG | - | chr4.4:7278499-7278518 | MS.gene49767:CDS | 30.0% |
| !!! | AGGTCCTTTTAGTTTTTGAA+TGG | - | chr4.4:7277088-7277107 | MS.gene49767:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | chr4.4:7278284-7278303 | MS.gene49767:CDS | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | + | chr4.4:7278303-7278284 | None:intergenic | 30.0% |
| AACAAACTGAAACACGAATC+AGG | - | chr4.4:7277274-7277293 | MS.gene49767:intron | 35.0% | |
| AACACAAGAACAAACACAAC+AGG | + | chr4.4:7277699-7277718 | None:intergenic | 35.0% | |
| AAGTTTCAAAAGTCCCAAAG+AGG | - | chr4.4:7277068-7277087 | MS.gene49767:intron | 35.0% | |
| AAGTTTCAAAAGTCCCAAAG+AGG | + | chr4.4:7277087-7277068 | None:intergenic | 35.0% | |
| ACAAAATCGCAGGTTCAATT+AGG | - | chr4.4:7277300-7277319 | MS.gene49767:intron | 35.0% | |
| ACAAACTGAAACACGAATCA+GGG | - | chr4.4:7277275-7277294 | MS.gene49767:intron | 35.0% | |
| ATCTTCAAAAAACCGACCTA+TGG | - | chr4.4:7276446-7276465 | MS.gene49767:CDS | 35.0% | |
| CAAAATCGCAGGTTCAATTA+GGG | - | chr4.4:7277301-7277320 | MS.gene49767:intron | 35.0% | |
| CAAACAAATACGTTCTTCTG+TGG | + | chr4.4:7276314-7276333 | None:intergenic | 35.0% | |
| CATGCACTTTCTTCTTCATA+GGG | + | chr4.4:7276965-7276984 | None:intergenic | 35.0% | |
| CTTCGGACAGTAACAAAAAT+GGG | + | chr4.4:7277909-7277928 | None:intergenic | 35.0% | |
| GATCCTAGAAAGCAACTTAA+CGG | - | chr4.4:7278196-7278215 | MS.gene49767:intron | 35.0% | |
| GTCCTATTCATAAACAGAAG+CGG | - | chr4.4:7276421-7276440 | MS.gene49767:CDS | 35.0% | |
| GTTACGAGAATTGGAAGAAT+TGG | - | chr4.4:7278022-7278041 | MS.gene49767:intron | 35.0% | |
| TAACACGTGCAAATGCAAAA+CGG | + | chr4.4:7277185-7277204 | None:intergenic | 35.0% | |
| TCACTAAAAGACCTGTTAAG+TGG | - | chr4.4:7276734-7276753 | MS.gene49767:intron | 35.0% | |
| TCATGCACTTTCTTCTTCAT+AGG | + | chr4.4:7276966-7276985 | None:intergenic | 35.0% | |
| TCTTCGGACAGTAACAAAAA+TGG | + | chr4.4:7277910-7277929 | None:intergenic | 35.0% | |
| TTAAAGCAGTGTCATACATG+TGG | + | chr4.4:7278408-7278427 | None:intergenic | 35.0% | |
| TTAGATTTAGAAGCTGCTGT+TGG | - | chr4.4:7278690-7278709 | MS.gene49767:CDS | 35.0% | |
| TTCGGACAGTAACAAAAATG+GGG | + | chr4.4:7277908-7277927 | None:intergenic | 35.0% | |
| TTCTCAAATACGACCTTGAA+TGG | - | chr4.4:7276521-7276540 | MS.gene49767:intron | 35.0% | |
| TTGCATTTGCACGTGTTATA+AGG | - | chr4.4:7277187-7277206 | MS.gene49767:intron | 35.0% | |
| ! | AAACAGGGGAAGGAAATTTT+GGG | + | chr4.4:7277883-7277902 | None:intergenic | 35.0% |
| ! | CTCCTTCTTTTCTGTATCTT+TGG | + | chr4.4:7278660-7278679 | None:intergenic | 35.0% |
| !! | CTTGATGGTGCTAACTATTT+GGG | - | chr4.4:7276637-7276656 | MS.gene49767:intron | 35.0% |
| !! | CTTTTCTGTATCTTTGGTTC+AGG | + | chr4.4:7278654-7278673 | None:intergenic | 35.0% |
| !! | TTTTGGTTGATGTTGAGAGA+TGG | + | chr4.4:7276360-7276379 | None:intergenic | 35.0% |
| !!! | TCCTGTCTATTGTTTTAGTG+AGG | - | chr4.4:7278623-7278642 | MS.gene49767:CDS | 35.0% |
| AACAAAAATGGGGCCAAACA+GGG | + | chr4.4:7277898-7277917 | None:intergenic | 40.0% | |
| AACATGCTGGCAATGCAAAA+CGG | - | chr4.4:7278165-7278184 | MS.gene49767:intron | 40.0% | |
| AACGCCTGTTCATGTAGATT+GGG | - | chr4.4:7277224-7277243 | MS.gene49767:intron | 40.0% | |
| AAGAACAAACACAACAGGTG+GGG | + | chr4.4:7277694-7277713 | None:intergenic | 40.0% | |
| AATCAGGGAAACAAAATCGC+AGG | - | chr4.4:7277290-7277309 | MS.gene49767:intron | 40.0% | |
| AATGTTGAAGTTGCGTCCTT+TGG | + | chr4.4:7276482-7276501 | None:intergenic | 40.0% | |
| ACAAGAACAAACACAACAGG+TGG | + | chr4.4:7277696-7277715 | None:intergenic | 40.0% | |
| AGGACTGAATGAAACTGTTC+CGG | + | chr4.4:7276406-7276425 | None:intergenic | 40.0% | |
| ATGTTGAAGTTGCGTCCTTT+GGG | + | chr4.4:7276481-7276500 | None:intergenic | 40.0% | |
| ATGTTGAGAGATGGAAGAAG+AGG | + | chr4.4:7276351-7276370 | None:intergenic | 40.0% | |
| ATTGGAAGAATTGGAGCGAA+AGG | - | chr4.4:7278031-7278050 | MS.gene49767:intron | 40.0% | |
| CAAAATTTCCTTCCCCTGTT+TGG | - | chr4.4:7277882-7277901 | MS.gene49767:intron | 40.0% | |
| CAAGAACAAACACAACAGGT+GGG | + | chr4.4:7277695-7277714 | None:intergenic | 40.0% | |
| CACACACTGTTATAACATGC+TGG | - | chr4.4:7278152-7278171 | MS.gene49767:intron | 40.0% | |
| CAGTGTTAAACAGAGACTGA+CGG | - | chr4.4:7278219-7278238 | MS.gene49767:intron | 40.0% | |
| CAGTGTTAAACAGAGACTGA+CGG | + | chr4.4:7278238-7278219 | None:intergenic | 40.0% | |
| GAAACGAAATCAACAAACGC+AGG | - | chr4.4:7277248-7277267 | MS.gene49767:intron | 40.0% | |
| GAACTTCAATCCAGTTTCCA+TGG | + | chr4.4:7278060-7278079 | None:intergenic | 40.0% | |
| GAGTAGAAGATCCACTTAAC+AGG | + | chr4.4:7276748-7276767 | None:intergenic | 40.0% | |
| GCCTCACTAAAACAATAGAC+AGG | + | chr4.4:7278627-7278646 | None:intergenic | 40.0% | |
| GGAATGCTGCAAGAAAGAAA+TGG | + | chr4.4:7277660-7277679 | None:intergenic | 40.0% | |
| GTCGAATAGCTCAACTAGTT+TGG | - | chr4.4:7276901-7276920 | MS.gene49767:intron | 40.0% | |
| GTGTCATCACTACAATAGGT+TGG | + | chr4.4:7277529-7277548 | None:intergenic | 40.0% | |
| GTTAAGTGGATCTTCTACTC+CGG | - | chr4.4:7276748-7276767 | MS.gene49767:intron | 40.0% | |
| TAACAAAAATGGGGCCAAAC+AGG | + | chr4.4:7277899-7277918 | None:intergenic | 40.0% | |
| TACGACCTTGAATGGAACAA+TGG | - | chr4.4:7276529-7276548 | MS.gene49767:intron | 40.0% | |
| TCAGTCTCTGTTTAACACTG+CGG | - | chr4.4:7277131-7277150 | MS.gene49767:intron | 40.0% | |
| TGAGAACACCAAGCTGATAT+TGG | + | chr4.4:7276507-7276526 | None:intergenic | 40.0% | |
| TGCTCATGTGATGACATTTG+AGG | - | chr4.4:7278566-7278585 | MS.gene49767:CDS | 40.0% | |
| TGTTCTTCGTAACAGAAGTG+AGG | + | chr4.4:7277973-7277992 | None:intergenic | 40.0% | |
| TTAGCACCATCAAGCCAATT+GGG | + | chr4.4:7276631-7276650 | None:intergenic | 40.0% | |
| ! | AACAGGGGAAGGAAATTTTG+GGG | + | chr4.4:7277882-7277901 | None:intergenic | 40.0% |
| ! | CAAACAGGGGAAGGAAATTT+TGG | + | chr4.4:7277884-7277903 | None:intergenic | 40.0% |
| ! | CATGTGATGACATTTGAGGT+TGG | - | chr4.4:7278570-7278589 | MS.gene49767:CDS | 40.0% |
| ! | TGCCGCTTCTGTTTATGAAT+AGG | + | chr4.4:7276426-7276445 | None:intergenic | 40.0% |
| !! | AATTTTGGGGATGTCGAGAA+TGG | + | chr4.4:7277869-7277888 | None:intergenic | 40.0% |
| !! | ATTTTGGGGATGTCGAGAAT+GGG | + | chr4.4:7277868-7277887 | None:intergenic | 40.0% |
| !! | GCTTGATGGTGCTAACTATT+TGG | - | chr4.4:7276636-7276655 | MS.gene49767:intron | 40.0% |
| AAACCGACCTATGGTACGAT+TGG | - | chr4.4:7276455-7276474 | MS.gene49767:CDS | 45.0% | |
| AAGAACAACGTTACTGTGCG+AGG | - | chr4.4:7277986-7278005 | MS.gene49767:intron | 45.0% | |
| AAGCAGTGTCATACATGTGG+TGG | + | chr4.4:7278405-7278424 | None:intergenic | 45.0% | |
| AATACGTTCTTCTGTGGCAG+AGG | + | chr4.4:7276308-7276327 | None:intergenic | 45.0% | |
| ACAAAAATGGGGCCAAACAG+GGG | + | chr4.4:7277897-7277916 | None:intergenic | 45.0% | |
| ACGCCTGTTCATGTAGATTG+GGG | - | chr4.4:7277225-7277244 | MS.gene49767:intron | 45.0% | |
| CAACGCCTGTTCATGTAGAT+TGG | - | chr4.4:7277223-7277242 | MS.gene49767:intron | 45.0% | |
| GATTTAGAAGCTGCTGTTGG+TGG | - | chr4.4:7278693-7278712 | MS.gene49767:CDS | 45.0% | |
| GCAAAGAACCAGCTGTTCTT+CGG | + | chr4.4:7277926-7277945 | None:intergenic | 45.0% | |
| GTTAGCACCATCAAGCCAAT+TGG | + | chr4.4:7276632-7276651 | None:intergenic | 45.0% | |
| TGGGTATTCTTCGTCCCAAT+TGG | - | chr4.4:7276614-7276633 | MS.gene49767:intron | 45.0% | |
| TTCCCCCAATCTACATGAAC+AGG | + | chr4.4:7277231-7277250 | None:intergenic | 45.0% | |
| ! | AGCCTAATGATGATGCTGCT+GGG | + | chr4.4:7277763-7277782 | None:intergenic | 45.0% |
| ! | AGGGTCGAGAGTATAGAGAA+AGG | + | chr4.4:7276560-7276579 | None:intergenic | 45.0% |
| ! | CTGCCGTTAAGTTGCTTTCT+AGG | + | chr4.4:7278202-7278221 | None:intergenic | 45.0% |
| ! | GTCGAGAGTATAGAGAAAGG+AGG | + | chr4.4:7276557-7276576 | None:intergenic | 45.0% |
| ! | TAGCCTAATGATGATGCTGC+TGG | + | chr4.4:7277764-7277783 | None:intergenic | 45.0% |
| !! | AGGTGCCATTGTTCCATTCA+AGG | + | chr4.4:7276537-7276556 | None:intergenic | 45.0% |
| !! | ATATGATGGTTGGTGAGTGC+AGG | - | chr4.4:7278537-7278556 | MS.gene49767:CDS | 45.0% |
| !! | CGTTGGAATTGGGTCGTTTT+TGG | + | chr4.4:7276377-7276396 | None:intergenic | 45.0% |
| !! | CTGCGGTTAACTTGCTTTCT+AGG | - | chr4.4:7277148-7277167 | MS.gene49767:intron | 45.0% |
| CACCCAGCAGCATCATCATT+AGG | - | chr4.4:7277758-7277777 | MS.gene49767:intron | 50.0% | |
| CGCCTGTTCATGTAGATTGG+GGG | - | chr4.4:7277226-7277245 | MS.gene49767:intron | 50.0% | |
| CTGGGTGTGGCTACTTCAAT+TGG | + | chr4.4:7277745-7277764 | None:intergenic | 50.0% | |
| CTTTGGGCCAATCGTACCAT+AGG | + | chr4.4:7276465-7276484 | None:intergenic | 50.0% | |
| GAATGAAACTGTTCCGGCCA+CGG | + | chr4.4:7276400-7276419 | None:intergenic | 50.0% | |
| GGAAGAATTGGAGCGAAAGG+AGG | - | chr4.4:7278034-7278053 | MS.gene49767:intron | 50.0% | |
| GTTACTGTCCGAAGAACAGC+TGG | - | chr4.4:7277915-7277934 | MS.gene49767:intron | 50.0% | |
| ! | AATGATGATGCTGCTGGGTG+TGG | + | chr4.4:7277758-7277777 | None:intergenic | 50.0% |
| ! | CTATGGTACGATTGGCCCAA+AGG | - | chr4.4:7276463-7276482 | MS.gene49767:CDS | 50.0% |
| ! | TTAGAAGCTGCTGTTGGTGG+TGG | - | chr4.4:7278696-7278715 | MS.gene49767:CDS | 50.0% |
| !! | ATTTGAGGTTGGTGCAGTGC+TGG | - | chr4.4:7278581-7278600 | MS.gene49767:CDS | 50.0% |
| !! | CTTCGTCCCAATTGGCTTGA+TGG | - | chr4.4:7276622-7276641 | MS.gene49767:intron | 50.0% |
| !!! | CTGTTGGTGGTGGTTTTCGT+GGG | - | chr4.4:7278706-7278725 | MS.gene49767:CDS | 50.0% |
| AAATGGGGCCAAACAGGGGA+AGG | + | chr4.4:7277893-7277912 | None:intergenic | 55.0% | |
| ACAGGTGGGGACACAATGTG+TGG | + | chr4.4:7277681-7277700 | None:intergenic | 55.0% | |
| ATTGGAGCGAAAGGAGGCCA+TGG | - | chr4.4:7278040-7278059 | MS.gene49767:intron | 55.0% | |
| CGAAAGGAGGCCATGGAAAC+TGG | - | chr4.4:7278047-7278066 | MS.gene49767:intron | 55.0% | |
| GGGCCAATCGTACCATAGGT+CGG | + | chr4.4:7276461-7276480 | None:intergenic | 55.0% | |
| TTGGGGATGTCGAGAATGGG+TGG | + | chr4.4:7277865-7277884 | None:intergenic | 55.0% | |
| ! | CAGTGCTGGACGATGAGCAT+TGG | - | chr4.4:7278595-7278614 | MS.gene49767:CDS | 55.0% |
| !!! | GCTGTTGGTGGTGGTTTTCG+TGG | - | chr4.4:7278705-7278724 | MS.gene49767:CDS | 55.0% |
| ACGACCCAATTCCAACGCCG+TGG | - | chr4.4:7276380-7276399 | MS.gene49767:CDS | 60.0% | |
| !! | GCTGGACGATGAGCATTGGC+AGG | - | chr4.4:7278599-7278618 | MS.gene49767:CDS | 60.0% |
| AACTGTTCCGGCCACGGCGT+TGG | + | chr4.4:7276394-7276413 | None:intergenic | 65.0% | |
| CCCAATTCCAACGCCGTGGC+CGG | - | chr4.4:7276384-7276403 | MS.gene49767:CDS | 65.0% | |
| ! | CCGGCCACGGCGTTGGAATT+GGG | + | chr4.4:7276387-7276406 | None:intergenic | 65.0% |
| ! | TCCGGCCACGGCGTTGGAAT+TGG | + | chr4.4:7276388-7276407 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 7276301 | 7278752 | 7276301 | ID=MS.gene49767 |
| chr4.4 | mRNA | 7276301 | 7278752 | 7276301 | ID=MS.gene49767.t1;Parent=MS.gene49767 |
| chr4.4 | exon | 7278284 | 7278752 | 7278284 | ID=MS.gene49767.t1.exon1;Parent=MS.gene49767.t1 |
| chr4.4 | CDS | 7278284 | 7278752 | 7278284 | ID=cds.MS.gene49767.t1;Parent=MS.gene49767.t1 |
| chr4.4 | exon | 7276301 | 7276494 | 7276301 | ID=MS.gene49767.t1.exon2;Parent=MS.gene49767.t1 |
| chr4.4 | CDS | 7276301 | 7276494 | 7276301 | ID=cds.MS.gene49767.t1;Parent=MS.gene49767.t1 |
| Gene Sequence |
| Protein sequence |
