Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70118.t1 | XP_013446935.1 | 85.4 | 219 | 32 | 0 | 1 | 219 | 1 | 219 | 1.80E-107 | 398.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70118.t1 | Q67YC9 | 71.1 | 149 | 42 | 1 | 37 | 185 | 36 | 183 | 2.3e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70118.t1 | A0A072TU64 | 85.4 | 219 | 32 | 0 | 1 | 219 | 1 | 219 | 1.3e-107 | 398.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene70118 | 0.820896 | 5.38E-53 | -1.69E-46 |
| MS.gene049427 | MS.gene70118 | 0.815642 | 8.33E-52 | -1.69E-46 |
| MS.gene049614 | MS.gene70118 | 0.815444 | 9.22E-52 | -1.69E-46 |
| MS.gene049760 | MS.gene70118 | 0.809076 | 2.26E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene70118 | 0.833817 | 4.29E-56 | -1.69E-46 |
| MS.gene050099 | MS.gene70118 | 0.81506 | 1.12E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene70118 | 0.819597 | 1.07E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene70118 | 0.824086 | 9.76E-54 | -1.69E-46 |
| MS.gene050505 | MS.gene70118 | -0.800314 | 1.53E-48 | -1.69E-46 |
| MS.gene050767 | MS.gene70118 | 0.816404 | 5.63E-52 | -1.69E-46 |
| MS.gene050770 | MS.gene70118 | 0.820044 | 8.45E-53 | -1.69E-46 |
| MS.gene050781 | MS.gene70118 | 0.816047 | 6.76E-52 | -1.69E-46 |
| MS.gene050783 | MS.gene70118 | 0.871557 | 6.24E-67 | -1.69E-46 |
| MS.gene050812 | MS.gene70118 | 0.81172 | 6.08E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene70118 | 0.848571 | 5.63E-60 | -1.69E-46 |
| MS.gene051171 | MS.gene70118 | 0.842756 | 2.13E-58 | -1.69E-46 |
| MS.gene051242 | MS.gene70118 | 0.84051 | 8.33E-58 | -1.69E-46 |
| MS.gene051244 | MS.gene70118 | 0.843266 | 1.56E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene70118 | 0.818244 | 2.17E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene70118 | 0.843012 | 1.82E-58 | -1.69E-46 |
| MS.gene052326 | MS.gene70118 | 0.83999 | 1.14E-57 | -1.69E-46 |
| MS.gene053107 | MS.gene70118 | 0.832364 | 9.86E-56 | -1.69E-46 |
| MS.gene053322 | MS.gene70118 | 0.827354 | 1.64E-54 | -1.69E-46 |
| MS.gene053971 | MS.gene70118 | 0.82687 | 2.14E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene70118 | 0.823204 | 1.57E-53 | -1.69E-46 |
| MS.gene05455 | MS.gene70118 | 0.803177 | 3.95E-49 | -1.69E-46 |
| MS.gene054802 | MS.gene70118 | 0.854166 | 1.47E-61 | -1.69E-46 |
| MS.gene054803 | MS.gene70118 | 0.85092 | 1.24E-60 | -1.69E-46 |
| MS.gene054804 | MS.gene70118 | 0.854795 | 9.70E-62 | -1.69E-46 |
| MS.gene055254 | MS.gene70118 | 0.80019 | 1.62E-48 | -1.69E-46 |
| MS.gene055277 | MS.gene70118 | 0.822649 | 2.12E-53 | -1.69E-46 |
| MS.gene055390 | MS.gene70118 | 0.801816 | 7.53E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene70118 | 0.828598 | 8.23E-55 | -1.69E-46 |
| MS.gene055499 | MS.gene70118 | 0.829468 | 5.06E-55 | -1.69E-46 |
| MS.gene055971 | MS.gene70118 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene056451 | MS.gene70118 | 0.803439 | 3.49E-49 | -1.69E-46 |
| MS.gene056452 | MS.gene70118 | 0.845772 | 3.30E-59 | -1.69E-46 |
| MS.gene056796 | MS.gene70118 | 0.827069 | 1.92E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene70118 | 0.828003 | 1.14E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene70118 | 0.825957 | 3.53E-54 | -1.69E-46 |
| MS.gene057196 | MS.gene70118 | 0.809959 | 1.46E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene70118 | 0.800545 | 1.37E-48 | -1.69E-46 |
| MS.gene058233 | MS.gene70118 | 0.842096 | 3.19E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene70118 | 0.821234 | 4.50E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene70118 | 0.82269 | 2.07E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene70118 | 0.835733 | 1.41E-56 | -1.69E-46 |
| MS.gene058746 | MS.gene70118 | 0.809046 | 2.30E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene70118 | 0.800112 | 1.68E-48 | -1.69E-46 |
| MS.gene059536 | MS.gene70118 | 0.802956 | 4.39E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene70118 | 0.805488 | 1.30E-49 | -1.69E-46 |
| MS.gene059858 | MS.gene70118 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene70118 | 0.837026 | 6.62E-57 | -1.69E-46 |
| MS.gene061200 | MS.gene70118 | 0.814316 | 1.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70118.t1 | MTR_8g096110 | 94.977 | 219 | 11 | 0 | 1 | 219 | 1 | 219 | 1.56e-151 | 419 |
| MS.gene70118.t1 | MTR_8g096080 | 80.180 | 222 | 42 | 1 | 1 | 220 | 1 | 222 | 2.65e-133 | 374 |
| MS.gene70118.t1 | MTR_8g096100 | 75.000 | 212 | 52 | 1 | 1 | 211 | 1 | 212 | 5.75e-112 | 319 |
| MS.gene70118.t1 | MTR_3g098490 | 67.553 | 188 | 54 | 3 | 1 | 185 | 1 | 184 | 6.91e-91 | 266 |
| MS.gene70118.t1 | MTR_3g098500 | 63.492 | 189 | 66 | 2 | 1 | 186 | 7 | 195 | 7.50e-84 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70118.t1 | AT3G23760 | 68.452 | 168 | 52 | 1 | 22 | 189 | 26 | 192 | 1.76e-87 | 256 |
| MS.gene70118.t1 | AT4G14100 | 63.842 | 177 | 63 | 1 | 9 | 185 | 8 | 183 | 2.45e-86 | 254 |
Find 45 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATGGTGCTAACTATT+TGG | 0.188411 | 4.1:-7218128 | MS.gene70118:CDS |
| TCCGGCCACGGCGTTGGAAT+TGG | 0.214822 | 4.1:+7218379 | None:intergenic |
| CTTCGTCCCAATTGGCTTGA+TGG | 0.251154 | 4.1:-7218142 | MS.gene70118:CDS |
| CTTGATGGTGCTAACTATTT+GGG | 0.286568 | 4.1:-7218127 | MS.gene70118:CDS |
| AATGTTGAAGTTGCGTCCTT+TGG | 0.308667 | 4.1:+7218285 | None:intergenic |
| AGCAGCTTCTAAATCTAATA+AGG | 0.316448 | 4.1:+7216548 | None:intergenic |
| TGAGAACACCAAGCTGATAT+TGG | 0.332979 | 4.1:+7218260 | None:intergenic |
| CCGGCCACGGCGTTGGAATT+GGG | 0.346904 | 4.1:+7218380 | None:intergenic |
| TGCCGCTTCTGTTTATGAAT+AGG | 0.369449 | 4.1:+7218341 | None:intergenic |
| TGGGTATTCTTCGTCCCAAT+TGG | 0.401532 | 4.1:-7218150 | MS.gene70118:CDS |
| TTCTCAAATACGACCTTGAA+TGG | 0.403268 | 4.1:-7218243 | MS.gene70118:CDS |
| ATGTTGAAGTTGCGTCCTTT+GGG | 0.414721 | 4.1:+7218286 | None:intergenic |
| GTTAGCACCATCAAGCCAAT+TGG | 0.414933 | 4.1:+7218135 | None:intergenic |
| GAGTAGAAGATCCACTTAAC+AGG | 0.446273 | 4.1:+7218019 | None:intergenic |
| AGGACTGAATGAAACTGTTC+CGG | 0.452659 | 4.1:+7218361 | None:intergenic |
| AGGTGCCATTGTTCCATTCA+AGG | 0.452905 | 4.1:+7218230 | None:intergenic |
| CCCAATTCCAACGCCGTGGC+CGG | 0.458323 | 4.1:-7218380 | MS.gene70118:CDS |
| AACTGTTCCGGCCACGGCGT+TGG | 0.477557 | 4.1:+7218373 | None:intergenic |
| AACCAAAGATACAGAAAAGA+AGG | 0.480532 | 4.1:-7216578 | MS.gene70118:CDS |
| ATTTGAGGTTGGTGCAGTGC+TGG | 0.481969 | 4.1:-7216652 | MS.gene70118:CDS |
| ATGTTGAGAGATGGAAGAAG+AGG | 0.484687 | 4.1:+7218416 | None:intergenic |
| TTAGAAGCTGCTGTTGGTGG+TGG | 0.492112 | 4.1:-7216537 | MS.gene70118:CDS |
| TCACTAAAAGACCTGTTAAG+TGG | 0.510005 | 4.1:-7218030 | MS.gene70118:CDS |
| TTAGCACCATCAAGCCAATT+GGG | 0.514645 | 4.1:+7218136 | None:intergenic |
| AAACCGACCTATGGTACGAT+TGG | 0.517325 | 4.1:-7218309 | MS.gene70118:CDS |
| TGCTCATGTGATGACATTTG+AGG | 0.519002 | 4.1:-7216667 | MS.gene70118:CDS |
| AACATTATCCAATATCAGCT+TGG | 0.519327 | 4.1:-7218268 | MS.gene70118:CDS |
| GATTTAGAAGCTGCTGTTGG+TGG | 0.522659 | 4.1:-7216540 | MS.gene70118:CDS |
| GAATGAAACTGTTCCGGCCA+CGG | 0.527864 | 4.1:+7218367 | None:intergenic |
| GTTAAGTGGATCTTCTACTC+CGG | 0.536632 | 4.1:-7218016 | MS.gene70118:intron |
| CTATGGTACGATTGGCCCAA+AGG | 0.539339 | 4.1:-7218301 | MS.gene70118:CDS |
| CTTTGGGCCAATCGTACCAT+AGG | 0.551684 | 4.1:+7218302 | None:intergenic |
| AGGGTCGAGAGTATAGAGAA+AGG | 0.556535 | 4.1:+7218207 | None:intergenic |
| GCTGGACGATGAGCATTGGC+AGG | 0.560605 | 4.1:-7216634 | MS.gene70118:CDS |
| AATACGTTCTTCTGTGGCAG+AGG | 0.569209 | 4.1:+7218459 | None:intergenic |
| TTAGATTTAGAAGCTGCTGT+TGG | 0.576944 | 4.1:-7216543 | MS.gene70118:CDS |
| CATGTGATGACATTTGAGGT+TGG | 0.580197 | 4.1:-7216663 | MS.gene70118:CDS |
| GGGCCAATCGTACCATAGGT+CGG | 0.598624 | 4.1:+7218306 | None:intergenic |
| GTCCTATTCATAAACAGAAG+CGG | 0.600560 | 4.1:-7218343 | MS.gene70118:CDS |
| GCCTCACTAAAACAATAGAC+AGG | 0.605065 | 4.1:+7216609 | None:intergenic |
| TACGACCTTGAATGGAACAA+TGG | 0.609959 | 4.1:-7218235 | MS.gene70118:CDS |
| CAGTGCTGGACGATGAGCAT+TGG | 0.613309 | 4.1:-7216638 | MS.gene70118:CDS |
| CAAACAAATACGTTCTTCTG+TGG | 0.631984 | 4.1:+7218453 | None:intergenic |
| ACGACCCAATTCCAACGCCG+TGG | 0.671513 | 4.1:-7218384 | MS.gene70118:CDS |
| GTCGAGAGTATAGAGAAAGG+AGG | 0.699354 | 4.1:+7218210 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAAAAAATTGAAC+AGG | - | chr4.1:7217515-7217534 | MS.gene70118:intron | 10.0% |
| !! | AACCAAATATATGTTGAAAA+TGG | + | chr4.1:7217318-7217337 | None:intergenic | 20.0% |
| !! | ATCAAGATTTAATAGAATGT+TGG | + | chr4.1:7217683-7217702 | None:intergenic | 20.0% |
| !! | TGATTGATAAATTGTTAAGT+TGG | + | chr4.1:7217552-7217571 | None:intergenic | 20.0% |
| !!! | AACCATTTTCAACATATATT+TGG | - | chr4.1:7217313-7217332 | MS.gene70118:intron | 20.0% |
| !!! | AAGTTCTGAAATTTCAAATT+GGG | - | chr4.1:7217807-7217826 | MS.gene70118:intron | 20.0% |
| !!! | ATAAAAGCATAATAACTAAC+CGG | + | chr4.1:7216972-7216991 | None:intergenic | 20.0% |
| !!! | ATACTTTTCTTTGTAATGTT+TGG | - | chr4.1:7216876-7216895 | MS.gene70118:intron | 20.0% |
| !!! | TACTTTTCTTTGTAATGTTT+GGG | - | chr4.1:7216877-7216896 | MS.gene70118:intron | 20.0% |
| !!! | TGATTTTATTTGGTATTATG+AGG | - | chr4.1:7216907-7216926 | MS.gene70118:intron | 20.0% |
| !!! | TTTTTCTTCATTCTTTTTCT+TGG | - | chr4.1:7217340-7217359 | MS.gene70118:intron | 20.0% |
| ! | ACCTAAAAAAAACTATGTGT+TGG | - | chr4.1:7218088-7218107 | MS.gene70118:CDS | 25.0% |
| ! | AGTTTACGATTATCAAATTG+GGG | - | chr4.1:7217839-7217858 | MS.gene70118:intron | 25.0% |
| ! | GAAACGATTCAAAAACTAAA+AGG | - | chr4.1:7217988-7218007 | MS.gene70118:intron | 25.0% |
| ! | GAAACTTAAAGGATGAATTT+GGG | - | chr4.1:7218028-7218047 | MS.gene70118:CDS | 25.0% |
| ! | GAGTTTACGATTATCAAATT+GGG | - | chr4.1:7217838-7217857 | MS.gene70118:intron | 25.0% |
| ! | GGGAAAAACTAAAAACTTAA+AGG | - | chr4.1:7218048-7218067 | MS.gene70118:CDS | 25.0% |
| ! | TCAATTAGGGTTATGAAATT+GGG | - | chr4.1:7217074-7217093 | MS.gene70118:intron | 25.0% |
| ! | TGAAACTTAAAGGATGAATT+TGG | - | chr4.1:7218027-7218046 | MS.gene70118:CDS | 25.0% |
| ! | TGCTTCATAGTAAATTAACA+TGG | + | chr4.1:7217011-7217030 | None:intergenic | 25.0% |
| ! | TTCAATTAGGGTTATGAAAT+TGG | - | chr4.1:7217073-7217092 | MS.gene70118:intron | 25.0% |
| !! | TTTTGCAAGTGTGATTAAAA+GGG | + | chr4.1:7216781-7216800 | None:intergenic | 25.0% |
| !! | TTTTTGCAAGTGTGATTAAA+AGG | + | chr4.1:7216782-7216801 | None:intergenic | 25.0% |
| !!! | AAAAAGCTTCATTTTGATGT+GGG | - | chr4.1:7216797-7216816 | MS.gene70118:intron | 25.0% |
| !!! | ACCAACACATAGTTTTTTTT+AGG | + | chr4.1:7218092-7218111 | None:intergenic | 25.0% |
| !!! | AGTTCTGAAATTTCAAATTG+GGG | - | chr4.1:7217808-7217827 | MS.gene70118:intron | 25.0% |
| !!! | GAAGTTCTGAAATTTCAAAT+TGG | - | chr4.1:7217806-7217825 | MS.gene70118:intron | 25.0% |
| AAAAACTAAAAGGACCTCTT+TGG | - | chr4.1:7217998-7218017 | MS.gene70118:intron | 30.0% | |
| AAAACTAAAAGGACCTCTTT+GGG | - | chr4.1:7217999-7218018 | MS.gene70118:intron | 30.0% | |
| AACATTATCCAATATCAGCT+TGG | - | chr4.1:7216698-7216717 | MS.gene70118:intron | 30.0% | |
| AACCAAAGATACAGAAAAGA+AGG | - | chr4.1:7218388-7218407 | MS.gene70118:CDS | 30.0% | |
| AAGCCTGATATATGATATGA+TGG | - | chr4.1:7218256-7218275 | MS.gene70118:CDS | 30.0% | |
| AATTAGGGTTATGAAATTGG+GGG | - | chr4.1:7217076-7217095 | MS.gene70118:intron | 30.0% | |
| AATTCTCGTAACAAAGTAGA+TGG | + | chr4.1:7217747-7217766 | None:intergenic | 30.0% | |
| AATTTCAAATTGGGGAACAA+TGG | - | chr4.1:7217816-7217835 | MS.gene70118:intron | 30.0% | |
| AGCAGCTTCTAAATCTAATA+AGG | + | chr4.1:7218421-7218440 | None:intergenic | 30.0% | |
| ATCTACTTTGTTACGAGAAT+TGG | - | chr4.1:7217746-7217765 | MS.gene70118:intron | 30.0% | |
| ATTCTCGTAACAAAGTAGAT+GGG | + | chr4.1:7217746-7217765 | None:intergenic | 30.0% | |
| ATTTGTGTCATCACTACAAT+AGG | + | chr4.1:7217266-7217285 | None:intergenic | 30.0% | |
| CAACCATCATATCATATATC+AGG | + | chr4.1:7218262-7218281 | None:intergenic | 30.0% | |
| CAATTAGGGTTATGAAATTG+GGG | - | chr4.1:7217075-7217094 | MS.gene70118:intron | 30.0% | |
| CTGATATATGATATGATGGT+TGG | - | chr4.1:7218260-7218279 | MS.gene70118:CDS | 30.0% | |
| GGAGTTTACGATTATCAAAT+TGG | - | chr4.1:7217837-7217856 | MS.gene70118:intron | 30.0% | |
| TAACATGGTACATCAGTTAA+AGG | + | chr4.1:7216996-7217015 | None:intergenic | 30.0% | |
| TATCAAATTGGGGAACAAAT+GGG | - | chr4.1:7217849-7217868 | MS.gene70118:intron | 30.0% | |
| TGATGTAATGTGTTGAATTG+TGG | + | chr4.1:7217155-7217174 | None:intergenic | 30.0% | |
| TGGTAATAATGAGCATTACA+AGG | + | chr4.1:7217373-7217392 | None:intergenic | 30.0% | |
| TTATCAAATTGGGGAACAAA+TGG | - | chr4.1:7217848-7217867 | MS.gene70118:intron | 30.0% | |
| TTTAGGTCAAATGCATCATT+AGG | + | chr4.1:7218075-7218094 | None:intergenic | 30.0% | |
| !! | CAAAAAGCTTCATTTTGATG+TGG | - | chr4.1:7216796-7216815 | MS.gene70118:intron | 30.0% |
| !! | GGGAGAAAGTTGATTTTATT+TGG | - | chr4.1:7216897-7216916 | MS.gene70118:intron | 30.0% |
| !! | TTAGTTGTGTTGATAGTGAT+TGG | - | chr4.1:7218232-7218251 | MS.gene70118:CDS | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | chr4.1:7218017-7218036 | MS.gene70118:CDS | 30.0% |
| AACACAAGAACAAACACAAC+AGG | + | chr4.1:7217432-7217451 | None:intergenic | 35.0% | |
| AAGTTTCAAAAGTCCCAAAG+AGG | + | chr4.1:7218015-7218034 | None:intergenic | 35.0% | |
| ACAAAATCGCAGGTTCAATT+AGG | - | chr4.1:7217060-7217079 | MS.gene70118:intron | 35.0% | |
| ATCTTCAAAAAACCGACCTA+TGG | - | chr4.1:7216648-7216667 | MS.gene70118:CDS | 35.0% | |
| CAAAATCGCAGGTTCAATTA+GGG | - | chr4.1:7217061-7217080 | MS.gene70118:intron | 35.0% | |
| CAAACAAATACGTTCTTCTG+TGG | + | chr4.1:7216516-7216535 | None:intergenic | 35.0% | |
| CTTCGGACAGTAACAAAAAT+GGG | + | chr4.1:7217642-7217661 | None:intergenic | 35.0% | |
| GATCCTAGAAAGCAACTTAA+CGG | - | chr4.1:7217929-7217948 | MS.gene70118:intron | 35.0% | |
| GTCCTATTCATAAACAGAAG+CGG | - | chr4.1:7216623-7216642 | MS.gene70118:CDS | 35.0% | |
| GTTACGAGAATTGGAAGAAT+TGG | - | chr4.1:7217755-7217774 | MS.gene70118:intron | 35.0% | |
| TCACTAAAAGACCTGTTAAG+TGG | - | chr4.1:7216936-7216955 | MS.gene70118:intron | 35.0% | |
| TCTTCGGACAGTAACAAAAA+TGG | + | chr4.1:7217643-7217662 | None:intergenic | 35.0% | |
| TTAAAGCAGTGTCATACATG+TGG | + | chr4.1:7218141-7218160 | None:intergenic | 35.0% | |
| TTAGATTTAGAAGCTGCTGT+TGG | - | chr4.1:7218423-7218442 | MS.gene70118:CDS | 35.0% | |
| TTCGGACAGTAACAAAAATG+GGG | + | chr4.1:7217641-7217660 | None:intergenic | 35.0% | |
| TTCTCAAATACGACCTTGAA+TGG | - | chr4.1:7216723-7216742 | MS.gene70118:intron | 35.0% | |
| ! | AAACAGGGGAAGGAAATTTT+GGG | + | chr4.1:7217616-7217635 | None:intergenic | 35.0% |
| ! | CTCCTTCTTTTCTGTATCTT+TGG | + | chr4.1:7218393-7218412 | None:intergenic | 35.0% |
| ! | TAATTGAACCTGCGATTTTG+TGG | + | chr4.1:7217061-7217080 | None:intergenic | 35.0% |
| !! | CTTGATGGTGCTAACTATTT+GGG | - | chr4.1:7216839-7216858 | MS.gene70118:intron | 35.0% |
| !! | CTTTTCTGTATCTTTGGTTC+AGG | + | chr4.1:7218387-7218406 | None:intergenic | 35.0% |
| !! | TTTTGGTTGATGTTGAGAGA+TGG | + | chr4.1:7216562-7216581 | None:intergenic | 35.0% |
| !!! | TCCTGTCTATTGTTTTAGTG+AGG | - | chr4.1:7218356-7218375 | MS.gene70118:CDS | 35.0% |
| AACAAAAATGGGGCCAAACA+GGG | + | chr4.1:7217631-7217650 | None:intergenic | 40.0% | |
| AACATGCTGGCAATGCAAAA+CGG | - | chr4.1:7217898-7217917 | MS.gene70118:intron | 40.0% | |
| AAGAACAAACACAACAGGTG+GGG | + | chr4.1:7217427-7217446 | None:intergenic | 40.0% | |
| AATGTTGAAGTTGCGTCCTT+TGG | + | chr4.1:7216684-7216703 | None:intergenic | 40.0% | |
| ACAAGAACAAACACAACAGG+TGG | + | chr4.1:7217429-7217448 | None:intergenic | 40.0% | |
| AGGACTGAATGAAACTGTTC+CGG | + | chr4.1:7216608-7216627 | None:intergenic | 40.0% | |
| ATATGTAGCCACAAAATCGC+AGG | - | chr4.1:7217050-7217069 | MS.gene70118:intron | 40.0% | |
| ATGTTGAAGTTGCGTCCTTT+GGG | + | chr4.1:7216683-7216702 | None:intergenic | 40.0% | |
| ATGTTGAGAGATGGAAGAAG+AGG | + | chr4.1:7216553-7216572 | None:intergenic | 40.0% | |
| ATTGGAAGAATTGGAGCGAA+AGG | - | chr4.1:7217764-7217783 | MS.gene70118:intron | 40.0% | |
| CAAAATTTCCTTCCCCTGTT+TGG | - | chr4.1:7217615-7217634 | MS.gene70118:intron | 40.0% | |
| CAAGAACAAACACAACAGGT+GGG | + | chr4.1:7217428-7217447 | None:intergenic | 40.0% | |
| CACACACTGTTATAACATGC+TGG | - | chr4.1:7217885-7217904 | MS.gene70118:intron | 40.0% | |
| CAGTGTTAAACAGAGACTGA+CGG | - | chr4.1:7217952-7217971 | MS.gene70118:intron | 40.0% | |
| GAACTTCAATCCAGTTTCCA+TGG | + | chr4.1:7217793-7217812 | None:intergenic | 40.0% | |
| GAGTAGAAGATCCACTTAAC+AGG | + | chr4.1:7216950-7216969 | None:intergenic | 40.0% | |
| GCCTCACTAAAACAATAGAC+AGG | + | chr4.1:7218360-7218379 | None:intergenic | 40.0% | |
| GGAATGCTGCAAGAAAGAAA+TGG | + | chr4.1:7217393-7217412 | None:intergenic | 40.0% | |
| GTGTCATCACTACAATAGGT+TGG | + | chr4.1:7217262-7217281 | None:intergenic | 40.0% | |
| GTTAAGTGGATCTTCTACTC+CGG | - | chr4.1:7216950-7216969 | MS.gene70118:intron | 40.0% | |
| TAACAAAAATGGGGCCAAAC+AGG | + | chr4.1:7217632-7217651 | None:intergenic | 40.0% | |
| TACGACCTTGAATGGAACAA+TGG | - | chr4.1:7216731-7216750 | MS.gene70118:intron | 40.0% | |
| TGAGAACACCAAGCTGATAT+TGG | + | chr4.1:7216709-7216728 | None:intergenic | 40.0% | |
| TGCTCATGTGATGACATTTG+AGG | - | chr4.1:7218299-7218318 | MS.gene70118:CDS | 40.0% | |
| TGTTCTTCGTAACAGAAGTG+AGG | + | chr4.1:7217706-7217725 | None:intergenic | 40.0% | |
| TTAGCACCATCAAGCCAATT+GGG | + | chr4.1:7216833-7216852 | None:intergenic | 40.0% | |
| ! | AACAGGGGAAGGAAATTTTG+GGG | + | chr4.1:7217615-7217634 | None:intergenic | 40.0% |
| ! | CAAACAGGGGAAGGAAATTT+TGG | + | chr4.1:7217617-7217636 | None:intergenic | 40.0% |
| ! | CATGTGATGACATTTGAGGT+TGG | - | chr4.1:7218303-7218322 | MS.gene70118:CDS | 40.0% |
| ! | TGCCGCTTCTGTTTATGAAT+AGG | + | chr4.1:7216628-7216647 | None:intergenic | 40.0% |
| !! | AATTTTGGGGATGTCGAGAA+TGG | + | chr4.1:7217602-7217621 | None:intergenic | 40.0% |
| !! | ATTTTGGGGATGTCGAGAAT+GGG | + | chr4.1:7217601-7217620 | None:intergenic | 40.0% |
| !! | GCTTGATGGTGCTAACTATT+TGG | - | chr4.1:7216838-7216857 | MS.gene70118:intron | 40.0% |
| AAACCGACCTATGGTACGAT+TGG | - | chr4.1:7216657-7216676 | MS.gene70118:CDS | 45.0% | |
| AAGAACAACGTTACTGTGCG+AGG | - | chr4.1:7217719-7217738 | MS.gene70118:intron | 45.0% | |
| AAGCAGTGTCATACATGTGG+TGG | + | chr4.1:7218138-7218157 | None:intergenic | 45.0% | |
| AATACGTTCTTCTGTGGCAG+AGG | + | chr4.1:7216510-7216529 | None:intergenic | 45.0% | |
| ACAAAAATGGGGCCAAACAG+GGG | + | chr4.1:7217630-7217649 | None:intergenic | 45.0% | |
| GATTTAGAAGCTGCTGTTGG+TGG | - | chr4.1:7218426-7218445 | MS.gene70118:CDS | 45.0% | |
| GCAAAGAACCAGCTGTTCTT+CGG | + | chr4.1:7217659-7217678 | None:intergenic | 45.0% | |
| GTTAGCACCATCAAGCCAAT+TGG | + | chr4.1:7216834-7216853 | None:intergenic | 45.0% | |
| TGGGTATTCTTCGTCCCAAT+TGG | - | chr4.1:7216816-7216835 | MS.gene70118:intron | 45.0% | |
| ! | AGCCTAATGATGATGCTGCT+GGG | + | chr4.1:7217496-7217515 | None:intergenic | 45.0% |
| ! | AGGGTCGAGAGTATAGAGAA+AGG | + | chr4.1:7216762-7216781 | None:intergenic | 45.0% |
| ! | CTGCCGTTAAGTTGCTTTCT+AGG | + | chr4.1:7217935-7217954 | None:intergenic | 45.0% |
| ! | GTCGAGAGTATAGAGAAAGG+AGG | + | chr4.1:7216759-7216778 | None:intergenic | 45.0% |
| ! | TAGCCTAATGATGATGCTGC+TGG | + | chr4.1:7217497-7217516 | None:intergenic | 45.0% |
| !! | AGGTGCCATTGTTCCATTCA+AGG | + | chr4.1:7216739-7216758 | None:intergenic | 45.0% |
| !! | ATATGATGGTTGGTGAGTGC+AGG | - | chr4.1:7218270-7218289 | MS.gene70118:CDS | 45.0% |
| !! | CGTTGGAATTGGGTCGTTTT+TGG | + | chr4.1:7216579-7216598 | None:intergenic | 45.0% |
| CACCCAGCAGCATCATCATT+AGG | - | chr4.1:7217491-7217510 | MS.gene70118:intron | 50.0% | |
| CTGGGTGTGGCTACTTCAAT+TGG | + | chr4.1:7217478-7217497 | None:intergenic | 50.0% | |
| CTTTGGGCCAATCGTACCAT+AGG | + | chr4.1:7216667-7216686 | None:intergenic | 50.0% | |
| GAATGAAACTGTTCCGGCCA+CGG | + | chr4.1:7216602-7216621 | None:intergenic | 50.0% | |
| GGAAGAATTGGAGCGAAAGG+AGG | - | chr4.1:7217767-7217786 | MS.gene70118:intron | 50.0% | |
| GTTACTGTCCGAAGAACAGC+TGG | - | chr4.1:7217648-7217667 | MS.gene70118:intron | 50.0% | |
| ! | AATGATGATGCTGCTGGGTG+TGG | + | chr4.1:7217491-7217510 | None:intergenic | 50.0% |
| ! | CTATGGTACGATTGGCCCAA+AGG | - | chr4.1:7216665-7216684 | MS.gene70118:CDS | 50.0% |
| ! | TTAGAAGCTGCTGTTGGTGG+TGG | - | chr4.1:7218429-7218448 | MS.gene70118:CDS | 50.0% |
| !! | ATTTGAGGTTGGTGCAGTGC+TGG | - | chr4.1:7218314-7218333 | MS.gene70118:CDS | 50.0% |
| !! | CTTCGTCCCAATTGGCTTGA+TGG | - | chr4.1:7216824-7216843 | MS.gene70118:intron | 50.0% |
| !!! | CTGTTGGTGGTGGTTTTCGT+GGG | - | chr4.1:7218439-7218458 | MS.gene70118:CDS | 50.0% |
| AAATGGGGCCAAACAGGGGA+AGG | + | chr4.1:7217626-7217645 | None:intergenic | 55.0% | |
| ACAGGTGGGGACACAATGTG+TGG | + | chr4.1:7217414-7217433 | None:intergenic | 55.0% | |
| ATTGGAGCGAAAGGAGGCCA+TGG | - | chr4.1:7217773-7217792 | MS.gene70118:intron | 55.0% | |
| CGAAAGGAGGCCATGGAAAC+TGG | - | chr4.1:7217780-7217799 | MS.gene70118:intron | 55.0% | |
| GGGCCAATCGTACCATAGGT+CGG | + | chr4.1:7216663-7216682 | None:intergenic | 55.0% | |
| TTGGGGATGTCGAGAATGGG+TGG | + | chr4.1:7217598-7217617 | None:intergenic | 55.0% | |
| ! | CAGTGCTGGACGATGAGCAT+TGG | - | chr4.1:7218328-7218347 | MS.gene70118:CDS | 55.0% |
| !!! | GCTGTTGGTGGTGGTTTTCG+TGG | - | chr4.1:7218438-7218457 | MS.gene70118:CDS | 55.0% |
| ACGACCCAATTCCAACGCCG+TGG | - | chr4.1:7216582-7216601 | MS.gene70118:CDS | 60.0% | |
| !! | GCTGGACGATGAGCATTGGC+AGG | - | chr4.1:7218332-7218351 | MS.gene70118:CDS | 60.0% |
| AACTGTTCCGGCCACGGCGT+TGG | + | chr4.1:7216596-7216615 | None:intergenic | 65.0% | |
| CCCAATTCCAACGCCGTGGC+CGG | - | chr4.1:7216586-7216605 | MS.gene70118:CDS | 65.0% | |
| ! | CCGGCCACGGCGTTGGAATT+GGG | + | chr4.1:7216589-7216608 | None:intergenic | 65.0% |
| ! | TCCGGCCACGGCGTTGGAAT+TGG | + | chr4.1:7216590-7216609 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 7216503 | 7218485 | 7216503 | ID=MS.gene70118 |
| chr4.1 | mRNA | 7216503 | 7218485 | 7216503 | ID=MS.gene70118.t1;Parent=MS.gene70118 |
| chr4.1 | exon | 7218017 | 7218485 | 7218017 | ID=MS.gene70118.t1.exon1;Parent=MS.gene70118.t1 |
| chr4.1 | CDS | 7218017 | 7218485 | 7218017 | ID=cds.MS.gene70118.t1;Parent=MS.gene70118.t1 |
| chr4.1 | exon | 7216503 | 7216696 | 7216503 | ID=MS.gene70118.t1.exon2;Parent=MS.gene70118.t1 |
| chr4.1 | CDS | 7216503 | 7216696 | 7216503 | ID=cds.MS.gene70118.t1;Parent=MS.gene70118.t1 |
| Gene Sequence |
| Protein sequence |
