AlfalfaGEDB | MS.gene51616

M. sativa cultivar XinJiangDaYe / MS.gene51616

KEGG: K09874
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0015267 GO:0016020 GO:0022803 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00230.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51616.t1	XP_003598246.1	97.1	245	7	0	1	245	1	245	3.00E-117	431.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51616.t1	P49173	66.7	228	76	0	16	243	33	260	6.4e-84	312.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51616.t1	G7IYK0	97.1	245	7	0	1	245	1	245	2.2e-117	431.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049173	MS.gene51616	0.800801	1.22E-48	-1.69E-46
MS.gene049217	MS.gene51616	0.807725	4.39E-50	-1.69E-46
MS.gene050163	MS.gene51616	0.80649	8.02E-50	-1.69E-46
MS.gene050165	MS.gene51616	0.803498	3.39E-49	-1.69E-46
MS.gene050444	MS.gene51616	0.836601	8.50E-57	-1.69E-46
MS.gene050505	MS.gene51616	-0.800756	1.24E-48	-1.69E-46
MS.gene051228	MS.gene51616	0.854944	8.78E-62	-1.69E-46
MS.gene051242	MS.gene51616	0.807335	5.32E-50	-1.69E-46
MS.gene051244	MS.gene51616	0.830231	3.30E-55	-1.69E-46
MS.gene051617	MS.gene51616	0.836124	1.12E-56	-1.69E-46
MS.gene051810	MS.gene51616	0.842325	2.77E-58	-1.69E-46
MS.gene051949	MS.gene51616	0.810512	1.11E-50	-1.69E-46
MS.gene052290	MS.gene51616	0.82266	2.10E-53	-1.69E-46
MS.gene052379	MS.gene51616	0.844344	8.01E-59	-1.69E-46
MS.gene052870	MS.gene51616	0.838421	2.91E-57	-1.69E-46
MS.gene052872	MS.gene51616	0.8352	1.93E-56	-1.69E-46
MS.gene053104	MS.gene51616	0.82065	6.13E-53	-1.69E-46
MS.gene053632	MS.gene51616	0.815847	7.50E-52	-1.69E-46
MS.gene054600	MS.gene51616	0.812858	3.43E-51	-1.69E-46
MS.gene054642	MS.gene51616	0.812134	4.94E-51	-1.69E-46
MS.gene055206	MS.gene51616	0.817618	3.00E-52	-1.69E-46
MS.gene055212	MS.gene51616	0.801796	7.60E-49	-1.69E-46
MS.gene055254	MS.gene51616	0.815442	9.22E-52	-1.69E-46
MS.gene056664	MS.gene51616	0.814944	1.19E-51	-1.69E-46
MS.gene056903	MS.gene51616	0.822619	2.15E-53	-1.69E-46
MS.gene057129	MS.gene51616	0.811152	8.08E-51	-1.69E-46
MS.gene057246	MS.gene51616	0.838932	2.14E-57	-1.69E-46
MS.gene057658	MS.gene51616	0.807542	4.80E-50	-1.69E-46
MS.gene058158	MS.gene51616	-0.800171	1.63E-48	-1.69E-46
MS.gene058723	MS.gene51616	0.814639	1.39E-51	-1.69E-46
MS.gene058773	MS.gene51616	0.805613	1.23E-49	-1.69E-46
MS.gene05914	MS.gene51616	0.82428	8.79E-54	-1.69E-46
MS.gene059677	MS.gene51616	0.818322	2.08E-52	-1.69E-46
MS.gene059858	MS.gene51616	0.841331	5.07E-58	-1.69E-46
MS.gene061150	MS.gene51616	0.804477	2.12E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51616.t1	MTR_3g008920	97.727	264	6	0	1	264	1	264	0.0	521
MS.gene51616.t1	MTR_5g079570	75.000	244	59	1	5	248	19	260	8.05e-137	386
MS.gene51616.t1	MTR_4g084880	62.771	231	83	1	16	243	25	255	5.47e-106	308
MS.gene51616.t1	MTR_8g087720	53.279	244	111	2	16	258	28	269	4.52e-86	258
MS.gene51616.t1	MTR_2g017610	54.393	239	106	2	8	243	18	256	7.21e-86	257
MS.gene51616.t1	MTR_2g017570	53.975	239	107	2	8	243	18	256	8.01e-85	254
MS.gene51616.t1	MTR_2g017590	52.301	239	111	2	8	243	16	254	5.10e-83	250
MS.gene51616.t1	MTR_8g087710	54.709	223	100	1	22	243	35	257	2.06e-81	246
MS.gene51616.t1	MTR_2g017660	48.031	254	126	3	8	258	19	269	7.94e-81	244
MS.gene51616.t1	MTR_2g017620	50.628	239	115	2	8	243	4	242	2.00e-79	240
MS.gene51616.t1	MTR_2g017620	50.628	239	115	2	8	243	18	256	2.54e-79	240
MS.gene51616.t1	MTR_7g010650	48.558	208	103	3	26	231	37	242	2.27e-61	195
MS.gene51616.t1	MTR_5g063930	46.087	230	101	4	25	242	36	254	4.49e-61	194
MS.gene51616.t1	MTR_2g017620	52.432	185	79	1	70	254	2	177	5.58e-61	191
MS.gene51616.t1	MTR_4g006730	49.351	231	112	4	8	235	56	284	9.95e-60	191
MS.gene51616.t1	MTR_8g087720	52.299	174	82	1	16	188	28	201	5.11e-57	181
MS.gene51616.t1	MTR_2g104940	48.131	214	107	3	24	235	78	289	1.03e-56	184
MS.gene51616.t1	MTR_4g006630	50.251	199	95	3	39	235	1	197	1.22e-53	173
MS.gene51616.t1	MTR_4g006730	50.251	199	95	3	39	235	1	197	1.83e-53	172
MS.gene51616.t1	MTR_8g087720	53.595	153	70	1	17	168	29	181	8.82e-51	165
MS.gene51616.t1	MTR_1g097840	41.841	239	133	4	1	235	47	283	1.46e-50	168
MS.gene51616.t1	MTR_1g070385	38.117	223	136	2	14	235	50	271	6.20e-41	150
MS.gene51616.t1	MTR_4g006730	43.925	214	103	5	8	218	56	255	5.86e-38	134
MS.gene51616.t1	MTR_7g010650	45.890	146	75	3	26	169	37	180	4.49e-34	122
MS.gene51616.t1	MTR_1g077540	35.169	236	139	6	25	249	20	252	2.86e-30	114
MS.gene51616.t1	MTR_1g097840	39.583	192	110	4	1	188	47	236	3.14e-30	114
MS.gene51616.t1	MTR_2g101370	38.333	240	116	10	22	240	16	244	1.44e-28	109
MS.gene51616.t1	MTR_6g069040	34.703	219	133	5	25	234	20	237	2.79e-27	106
MS.gene51616.t1	MTR_5g012810	36.402	239	133	7	25	253	18	247	6.90e-27	105
MS.gene51616.t1	MTR_8g013680	36.709	237	124	9	25	243	18	246	1.18e-26	104
MS.gene51616.t1	MTR_1g006490	37.327	217	127	7	25	234	18	232	2.63e-26	103
MS.gene51616.t1	MTR_4g006650	48.951	143	60	4	27	167	5	136	1.63e-25	102
MS.gene51616.t1	MTR_1g115405	36.986	219	124	6	25	232	20	235	4.65e-24	97.4
MS.gene51616.t1	MTR_1g006590	35.484	217	131	7	25	234	18	232	2.81e-23	95.5
MS.gene51616.t1	MTR_7g103030	35.398	226	123	8	30	239	25	243	2.89e-23	95.5
MS.gene51616.t1	MTR_4g063090	37.383	214	118	8	31	232	26	235	2.03e-22	93.2
MS.gene51616.t1	MTR_3g118010	29.200	250	158	7	20	251	31	279	3.86e-22	93.2
MS.gene51616.t1	MTR_2g094270	33.862	189	111	5	59	234	84	271	4.26e-21	90.5
MS.gene51616.t1	MTR_7g023350	31.963	219	135	3	25	232	20	235	1.05e-19	85.9
MS.gene51616.t1	MTR_5g010150	31.771	192	118	4	54	232	84	275	3.19e-19	85.1
MS.gene51616.t1	MTR_7g101190	32.308	195	112	5	59	237	82	272	3.25e-19	85.1
MS.gene51616.t1	MTR_1g095070	31.841	201	116	6	67	250	24	220	6.28e-19	83.2
MS.gene51616.t1	MTR_5g082070	28.700	223	140	4	25	231	58	277	3.95e-18	82.4
MS.gene51616.t1	MTR_4g059390	30.208	192	114	5	59	234	82	269	1.38e-17	80.5
MS.gene51616.t1	MTR_8g098375	30.729	192	120	4	54	232	84	275	2.15e-17	80.1
MS.gene51616.t1	MTR_3g070210	29.101	189	115	4	59	231	92	277	1.28e-16	78.2
MS.gene51616.t1	MTR_2g060360	33.758	157	101	3	78	232	77	232	6.07e-16	75.5
MS.gene51616.t1	MTR_4g415300	27.803	223	137	7	30	232	60	278	1.12e-15	75.5
MS.gene51616.t1	MTR_2g094270	33.129	163	98	4	59	211	84	245	1.51e-15	74.7
MS.gene51616.t1	MTR_1g095070	32.026	153	87	4	67	206	24	172	1.74e-13	67.8
MS.gene51616.t1	MTR_3g070210	27.607	163	102	3	59	208	92	251	2.08e-12	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51616.t1	AT5G37820	62.083	240	81	2	16	254	33	263	2.06e-104	305
MS.gene51616.t1	AT5G37820	62.083	240	81	2	16	254	69	299	3.61e-104	305
MS.gene51616.t1	AT5G37810	60.246	244	94	2	16	258	33	274	1.59e-101	297
MS.gene51616.t1	AT4G18910	55.217	230	95	2	22	243	48	277	2.66e-84	254
MS.gene51616.t1	AT1G31885	47.581	248	120	3	22	261	39	284	2.90e-76	234
MS.gene51616.t1	AT4G19030	49.130	230	109	2	22	243	51	280	3.03e-74	228
MS.gene51616.t1	AT1G31885	48.707	232	109	3	38	261	1	230	3.87e-71	219
MS.gene51616.t1	AT2G34390	42.969	256	135	4	13	258	33	287	3.42e-67	210
MS.gene51616.t1	AT2G34390	43.333	240	127	3	27	258	7	245	5.10e-65	203
MS.gene51616.t1	AT4G18910	52.571	175	75	2	22	188	48	222	4.04e-56	179
MS.gene51616.t1	AT1G80760	44.651	215	117	2	22	235	76	289	1.23e-51	171
MS.gene51616.t1	AT4G10380	41.304	230	126	4	22	249	74	296	2.04e-48	162
MS.gene51616.t1	AT4G19030	45.402	174	87	2	22	187	51	224	5.56e-48	159
MS.gene51616.t1	AT2G34390	41.398	186	98	4	13	188	33	217	1.60e-43	147
MS.gene51616.t1	AT4G19030	46.452	155	75	2	22	168	51	205	5.80e-43	146
MS.gene51616.t1	AT2G34390	42.604	169	86	4	13	171	33	200	6.60e-40	138
MS.gene51616.t1	AT3G06100	35.321	218	138	3	25	240	45	261	3.67e-38	135
MS.gene51616.t1	AT3G06100	35.681	213	134	3	30	240	2	213	1.02e-37	132
MS.gene51616.t1	AT3G16240	36.530	219	125	7	25	232	18	233	2.27e-27	106
MS.gene51616.t1	AT3G26520	38.288	222	121	8	25	234	21	238	1.01e-26	104
MS.gene51616.t1	AT1G17810	34.348	230	124	6	25	234	23	245	1.18e-26	104
MS.gene51616.t1	AT1G73190	34.310	239	130	8	25	243	23	254	2.00e-26	104
MS.gene51616.t1	AT2G29870	50.526	95	47	0	142	236	22	116	4.01e-26	100
MS.gene51616.t1	AT4G17340	33.188	229	144	4	25	244	18	246	1.86e-25	101
MS.gene51616.t1	AT2G25810	32.510	243	148	5	25	262	18	249	4.03e-25	100
MS.gene51616.t1	AT5G47450	34.199	231	144	4	22	244	15	245	4.76e-25	100
MS.gene51616.t1	AT4G01470	33.333	231	116	6	25	232	20	235	3.53e-24	97.8
MS.gene51616.t1	AT2G16850	30.800	250	154	7	20	251	30	278	1.04e-23	97.4
MS.gene51616.t1	AT1G31885	45.122	82	44	1	22	102	39	120	1.39e-22	90.9
MS.gene51616.t1	AT2G36830	35.160	219	128	6	25	232	20	235	1.27e-21	91.3
MS.gene51616.t1	AT3G06100	34.507	142	91	2	101	241	41	181	6.94e-21	87.8
MS.gene51616.t1	AT1G01620	32.474	194	117	5	54	234	12	204	1.04e-19	85.1
MS.gene51616.t1	AT4G35100	32.812	192	115	5	59	237	75	265	1.24e-19	86.3
MS.gene51616.t1	AT4G35100	32.812	192	115	5	59	237	75	265	1.24e-19	86.3
MS.gene51616.t1	AT5G60660	32.178	202	116	5	53	237	76	273	2.05e-19	85.9
MS.gene51616.t1	AT1G01620	32.474	194	117	5	54	234	84	276	2.29e-19	85.5
MS.gene51616.t1	AT3G54820	31.731	208	121	6	59	249	81	284	2.64e-19	85.5
MS.gene51616.t1	AT3G53420	31.343	201	118	5	53	237	76	272	3.92e-19	85.1
MS.gene51616.t1	AT3G53420	31.343	201	118	5	53	237	76	272	3.92e-19	85.1
MS.gene51616.t1	AT4G00430	32.292	192	116	5	54	232	85	275	4.34e-19	84.7
MS.gene51616.t1	AT2G37170	31.343	201	118	5	53	237	74	270	1.26e-18	83.6
MS.gene51616.t1	AT2G37170	29.461	241	140	6	23	237	77	313	1.35e-18	84.0
MS.gene51616.t1	AT3G47440	30.137	219	128	7	30	232	27	236	4.99e-18	81.6
MS.gene51616.t1	AT2G37180	29.046	241	141	6	23	237	34	270	5.31e-18	82.0
MS.gene51616.t1	AT3G61430	31.606	193	114	5	54	231	84	273	7.12e-18	81.6
MS.gene51616.t1	AT3G61430	31.606	193	114	5	54	231	84	273	7.12e-18	81.6
MS.gene51616.t1	AT4G23400	31.034	203	128	4	54	244	85	287	8.72e-18	81.3
MS.gene51616.t1	AT2G39010	29.665	209	129	4	41	237	69	271	2.03e-17	80.5
MS.gene51616.t1	AT2G45960	30.570	193	116	5	54	231	84	273	7.81e-17	78.6
MS.gene51616.t1	AT2G45960	29.940	167	102	4	54	208	84	247	8.96e-13	67.0
MS.gene51616.t1	AT2G45960	29.940	167	102	4	54	208	84	247	1.00e-12	67.0

Find 53 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATATTGTTGGTCCAATTAT+TGG	0.162167	3.4:-4002292	MS.gene51616:CDS
TTCATTGCTGGGCCTGTATC+AGG	0.233946	3.4:-4002385	MS.gene51616:CDS
CCAGCTATGGCTCCAATAAT+TGG	0.252991	3.4:+4002280	None:intergenic
TACATTGTTGCTCAGTTACT+TGG	0.281444	3.4:-4002625	MS.gene51616:CDS
TAAATATGTATTACAATTGC+AGG	0.326908	3.4:+4002331	None:intergenic
TGCTGATCTAAGAAAGTTAT+AGG	0.335340	3.4:+4002249	None:intergenic
ATCACACCCGAATCTTATTT+CGG	0.354797	3.4:-4002562	MS.gene51616:CDS
TTCCAGGGATTTGTATCACT+TGG	0.358323	3.4:-4002768	MS.gene51616:CDS
GCAGGACCAATACTTCTTGC+TGG	0.368004	3.4:+4002349	None:intergenic
TTCATAGATGCTCCTGATAC+AGG	0.392349	3.4:+4002373	None:intergenic
TCCAGGGATTTGTATCACTT+GGG	0.395736	3.4:-4002767	MS.gene51616:CDS
TCTGCTATTGTCTCTGAAGC+TGG	0.412277	3.4:+4002220	None:intergenic
CCAATTATTGGAGCCATAGC+TGG	0.416211	3.4:-4002280	MS.gene51616:CDS
ATCTTATTTCGGAACTGTAC+CGG	0.421247	3.4:-4002551	MS.gene51616:CDS
TTTCTAGTGTTTGCTGGTTG+TGG	0.424447	3.4:-4002829	MS.gene51616:CDS
TACAGTTCCGAAATAAGATT+CGG	0.439671	3.4:+4002555	None:intergenic
ACTGTACCGGTCGGATCAAA+TGG	0.444861	3.4:-4002538	MS.gene51616:CDS
TACTCCGTTGGTCATATCTC+TGG	0.449191	3.4:-4002721	MS.gene51616:CDS
TGAAACATTGTTGTTCATCA+AGG	0.453880	3.4:-4002903	MS.gene51616:CDS
CCAGGGATTTGTATCACTTG+GGG	0.463243	3.4:-4002766	MS.gene51616:CDS
TCTGCTGTTAATTCTGAAGT+TGG	0.471889	3.4:+4002193	None:intergenic
ACCCTGCTGTTACAATCACT+TGG	0.473532	3.4:-4002687	MS.gene51616:CDS
ATGAACAACAATGTTTCAAG+AGG	0.474822	3.4:+4002908	None:intergenic
TGTAATAACCTTGATACAAA+AGG	0.475051	3.4:-4002878	MS.gene51616:CDS
AAATGGTCAATCTTTAGTGT+TGG	0.484202	3.4:-4002521	MS.gene51616:CDS
ACAGTTCCGAAATAAGATTC+GGG	0.488105	3.4:+4002556	None:intergenic
AAGGTGACTGCAGAAGTTAT+TGG	0.491369	3.4:-4002859	MS.gene51616:CDS
TGATAGAGCGGTCGATGACT+CGG	0.499012	3.4:-4002446	MS.gene51616:CDS
GCCCAAGTGATTGTAACAGC+AGG	0.500454	3.4:+4002685	None:intergenic
ATGAATCCAGCAAGAAGTAT+TGG	0.512100	3.4:-4002355	MS.gene51616:CDS
GGATTGTGGATATATATTGT+TGG	0.522254	3.4:-4002304	MS.gene51616:CDS
TACATATTTACAAAGGATTG+TGG	0.529405	3.4:-4002318	MS.gene51616:CDS
ACATTGTTGCTCAGTTACTT+GGG	0.533856	3.4:-4002624	MS.gene51616:CDS
GACTCGGCAAGTATTGCAGT+TGG	0.544686	3.4:-4002430	MS.gene51616:CDS
CAGGGATTTGTATCACTTGG+GGG	0.545559	3.4:-4002765	MS.gene51616:CDS
ATAGGCAAGTGCTCCAGCTA+TGG	0.547527	3.4:+4002267	None:intergenic
CCCCAAGTGATACAAATCCC+TGG	0.552028	3.4:+4002766	None:intergenic
GATTGACCATTTGATCCGAC+CGG	0.564200	3.4:+4002532	None:intergenic
TCAATGGCAATAAAACATCA+AGG	0.580804	3.4:-4002940	MS.gene51616:CDS
ATTGTAATACATATTTACAA+AGG	0.588504	3.4:-4002325	MS.gene51616:CDS
TCCGTTGGTCATATCTCTGG+AGG	0.589588	3.4:-4002718	MS.gene51616:CDS
ACAGTCATGTGTTACTCCGT+TGG	0.600056	3.4:-4002733	MS.gene51616:CDS
CCCTGCTGTTACAATCACTT+GGG	0.603540	3.4:-4002686	MS.gene51616:CDS
ACCTACACAATGTTCTCTGA+AGG	0.609197	3.4:+4002163	None:intergenic
CCCAAGTGATTGTAACAGCA+GGG	0.612416	3.4:+4002686	None:intergenic
TACACAATGTTCTCTGAAGG+TGG	0.619523	3.4:+4002166	None:intergenic
GTAGCAATAAATAAGATACA+TGG	0.620958	3.4:-4002802	MS.gene51616:CDS
TGAACAACAATGTTTCAAGA+GGG	0.621482	3.4:+4002909	None:intergenic
ACCTCCAGAGATATGACCAA+CGG	0.646617	3.4:+4002717	None:intergenic
AACTGAGCAACAATGTACAA+AGG	0.653595	3.4:+4002631	None:intergenic
TATTTCGGAACTGTACCGGT+CGG	0.668392	3.4:-4002547	MS.gene51616:CDS
ACCTTCAGAGAACATTGTGT+AGG	0.675859	3.4:-4002164	None:intergenic
TGTTACTACAGATGATAGAG+CGG	0.715844	3.4:-4002458	MS.gene51616:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTGTAATACATATTTACAA+AGG	-	chr3.4:4002777-4002796	MS.gene51616:CDS	15.0%
!!	TAAATATGTATTACAATTGC+AGG	+	chr3.4:4002774-4002793	None:intergenic	20.0%
!	GTAGCAATAAATAAGATACA+TGG	-	chr3.4:4002300-4002319	MS.gene51616:CDS	25.0%
!	TACATATTTACAAAGGATTG+TGG	-	chr3.4:4002784-4002803	MS.gene51616:CDS	25.0%
!	TATATTGTTGGTCCAATTAT+TGG	-	chr3.4:4002810-4002829	MS.gene51616:CDS	25.0%
!	TGTAATAACCTTGATACAAA+AGG	-	chr3.4:4002224-4002243	MS.gene51616:CDS	25.0%
	AAATGGTCAATCTTTAGTGT+TGG	-	chr3.4:4002581-4002600	MS.gene51616:CDS	30.0%
	ATGAACAACAATGTTTCAAG+AGG	+	chr3.4:4002197-4002216	None:intergenic	30.0%
	GGATTGTGGATATATATTGT+TGG	-	chr3.4:4002798-4002817	MS.gene51616:CDS	30.0%
	TACAGTTCCGAAATAAGATT+CGG	+	chr3.4:4002550-4002569	None:intergenic	30.0%
	TGAACAACAATGTTTCAAGA+GGG	+	chr3.4:4002196-4002215	None:intergenic	30.0%
	TGCTGATCTAAGAAAGTTAT+AGG	+	chr3.4:4002856-4002875	None:intergenic	30.0%
!	ACATTGAATCTTTTCATTGC+TGG	-	chr3.4:4002705-4002724	MS.gene51616:CDS	30.0%
!	CATTGAATCTTTTCATTGCT+GGG	-	chr3.4:4002706-4002725	MS.gene51616:CDS	30.0%
!	TGAAACATTGTTGTTCATCA+AGG	-	chr3.4:4002199-4002218	MS.gene51616:CDS	30.0%
!!	ACATATTTTCTAGTGTTTGC+TGG	-	chr3.4:4002267-4002286	MS.gene51616:CDS	30.0%
	AACTGAGCAACAATGTACAA+AGG	+	chr3.4:4002474-4002493	None:intergenic	35.0%
	ACAGTTCCGAAATAAGATTC+GGG	+	chr3.4:4002549-4002568	None:intergenic	35.0%
	ACATTGTTGCTCAGTTACTT+GGG	-	chr3.4:4002478-4002497	MS.gene51616:CDS	35.0%
	TACATTGTTGCTCAGTTACT+TGG	-	chr3.4:4002477-4002496	MS.gene51616:CDS	35.0%
	TGTTACTACAGATGATAGAG+CGG	-	chr3.4:4002644-4002663	MS.gene51616:CDS	35.0%
!	ATCACACCCGAATCTTATTT+CGG	-	chr3.4:4002540-4002559	MS.gene51616:CDS	35.0%
!	ATCTTATTTCGGAACTGTAC+CGG	-	chr3.4:4002551-4002570	MS.gene51616:CDS	35.0%
!	ATGAATCCAGCAAGAAGTAT+TGG	-	chr3.4:4002747-4002766	MS.gene51616:CDS	35.0%
!!	TCTGCTGTTAATTCTGAAGT+TGG	+	chr3.4:4002912-4002931	None:intergenic	35.0%
	AAGGTGACTGCAGAAGTTAT+TGG	-	chr3.4:4002243-4002262	MS.gene51616:CDS	40.0%
	TCCAGGGATTTGTATCACTT+GGG	-	chr3.4:4002335-4002354	MS.gene51616:CDS	40.0%
	TTCATAGATGCTCCTGATAC+AGG	+	chr3.4:4002732-4002751	None:intergenic	40.0%
	TTCCAGGGATTTGTATCACT+TGG	-	chr3.4:4002334-4002353	MS.gene51616:CDS	40.0%
!	TACACAATGTTCTCTGAAGG+TGG	+	chr3.4:4002939-4002958	None:intergenic	40.0%
!	TGCAGTCACCTTTTGTATCA+AGG	+	chr3.4:4002235-4002254	None:intergenic	40.0%
!	TTTCTAGTGTTTGCTGGTTG+TGG	-	chr3.4:4002273-4002292	MS.gene51616:CDS	40.0%
!!	ATGGCTCTATCACTTTTCCA+GGG	-	chr3.4:4002319-4002338	MS.gene51616:CDS	40.0%
	ACCCTGCTGTTACAATCACT+TGG	-	chr3.4:4002415-4002434	MS.gene51616:CDS	45.0%
	ACCTCCAGAGATATGACCAA+CGG	+	chr3.4:4002388-4002407	None:intergenic	45.0%
	CAGGGATTTGTATCACTTGG+GGG	-	chr3.4:4002337-4002356	MS.gene51616:CDS	45.0%
	CCAATTATTGGAGCCATAGC+TGG	-	chr3.4:4002822-4002841	MS.gene51616:CDS	45.0%
	CCAGCTATGGCTCCAATAAT+TGG	+	chr3.4:4002825-4002844	None:intergenic	45.0%
	CCAGGGATTTGTATCACTTG+GGG	-	chr3.4:4002336-4002355	MS.gene51616:CDS	45.0%
	CCCAAGTGATTGTAACAGCA+GGG	+	chr3.4:4002419-4002438	None:intergenic	45.0%
	CCCTGCTGTTACAATCACTT+GGG	-	chr3.4:4002416-4002435	MS.gene51616:CDS	45.0%
	GATTGACCATTTGATCCGAC+CGG	+	chr3.4:4002573-4002592	None:intergenic	45.0%
	TACTCCGTTGGTCATATCTC+TGG	-	chr3.4:4002381-4002400	MS.gene51616:CDS	45.0%
!	ACAGTCATGTGTTACTCCGT+TGG	-	chr3.4:4002369-4002388	MS.gene51616:CDS	45.0%
!	TATTTCGGAACTGTACCGGT+CGG	-	chr3.4:4002555-4002574	MS.gene51616:CDS	45.0%
!!	CATGGCTCTATCACTTTTCC+AGG	-	chr3.4:4002318-4002337	MS.gene51616:CDS	45.0%
!!	TCTGCTATTGTCTCTGAAGC+TGG	+	chr3.4:4002885-4002904	None:intergenic	45.0%
	ATAGGCAAGTGCTCCAGCTA+TGG	+	chr3.4:4002838-4002857	None:intergenic	50.0%
	CCCCAAGTGATACAAATCCC+TGG	+	chr3.4:4002339-4002358	None:intergenic	50.0%
	GCAGGACCAATACTTCTTGC+TGG	+	chr3.4:4002756-4002775	None:intergenic	50.0%
	GCCCAAGTGATTGTAACAGC+AGG	+	chr3.4:4002420-4002439	None:intergenic	50.0%
	TCCGTTGGTCATATCTCTGG+AGG	-	chr3.4:4002384-4002403	MS.gene51616:CDS	50.0%
	TGATAGAGCGGTCGATGACT+CGG	-	chr3.4:4002656-4002675	MS.gene51616:CDS	50.0%
	TTCATTGCTGGGCCTGTATC+AGG	-	chr3.4:4002717-4002736	MS.gene51616:CDS	50.0%
!	ACTGTACCGGTCGGATCAAA+TGG	-	chr3.4:4002564-4002583	MS.gene51616:CDS	50.0%
!	GACTCGGCAAGTATTGCAGT+TGG	-	chr3.4:4002672-4002691	MS.gene51616:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	4002165	4002959	4002165	ID=MS.gene51616
chr3.4	mRNA	4002165	4002959	4002165	ID=MS.gene51616.t1;Parent=MS.gene51616
chr3.4	exon	4002165	4002959	4002165	ID=MS.gene51616.t1.exon1;Parent=MS.gene51616.t1
chr3.4	CDS	4002165	4002959	4002165	ID=cds.MS.gene51616.t1;Parent=MS.gene51616.t1

Gene Sequence

>MS.gene51616

ATGGCAATAAAACATCAAGGAAACAATTCCCTCTTGAAACATTGTTGTTCATCAAGGCGTGTAATAACCTTGATACAAAAGGTGACTGCAGAAGTTATTGGCACATATTTTCTAGTGTTTGCTGGTTGTGGTGCTGTAGCAATAAATAAGATACATGGCTCTATCACTTTTCCAGGGATTTGTATCACTTGGGGGTTGATTGTAACAGTCATGTGTTACTCCGTTGGTCATATCTCTGGAGGTCTCTTCAACCCTGCTGTTACAATCACTTGGGCTATCTTTCGTCGCATCACGATTAAAGAAGCTCCTTTGTACATTGTTGCTCAGTTACTTGGGTCTACACTTGCAAGTGTAACATTATCTCTAATGTTTGATATCACACCCGAATCTTATTTCGGAACTGTACCGGTCGGATCAAATGGTCAATCTTTAGTGTTGGAAATCATTATCAGTTTTCTCTTAATGTTTGTCATTTCAGCTGTTACTACAGATGATAGAGCGGTCGATGACTCGGCAAGTATTGCAGTTGGAATGACTTTAACATTGAATCTTTTCATTGCTGGGCCTGTATCAGGAGCATCTATGAATCCAGCAAGAAGTATTGGTCCTGCAATTGTAATACATATTTACAAAGGATTGTGGATATATATTGTTGGTCCAATTATTGGAGCCATAGCTGGAGCACTTGCCTATAACTTTCTTAGATCAGCATACAAGCCAGCTTCAGAGACAATAGCAGACAAACCAACTTCAGAATTAACAGCAGACAAGCCACCTTCAGAGAACATTGTGTAG

Protein sequence

>MS.gene51616.t1

MAIKHQGNNSLLKHCCSSRRVITLIQKVTAEVIGTYFLVFAGCGAVAINKIHGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVTITWAIFRRITIKEAPLYIVAQLLGSTLASVTLSLMFDITPESYFGTVPVGSNGQSLVLEIIISFLLMFVISAVTTDDRAVDDSASIAVGMTLTLNLFIAGPVSGASMNPARSIGPAIVIHIYKGLWIYIVGPIIGAIAGALAYNFLRSAYKPASETIADKPTSELTADKPPSENIV