Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06869.t1 | XP_003602308.1 | 97 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 2.70E-122 | 448 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06869.t1 | Q94A65 | 79.3 | 174 | 36 | 0 | 54 | 227 | 44 | 217 | 7.3e-76 | 285.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06869.t1 | G7J862 | 97.0 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 2.0e-122 | 448.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene06869 | 0.82241 | 2.40E-53 | -1.69E-46 |
| MS.gene049171 | MS.gene06869 | 0.862142 | 6.25E-64 | -1.69E-46 |
| MS.gene049285 | MS.gene06869 | 0.835289 | 1.83E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene06869 | 0.825518 | 4.49E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene06869 | 0.85304 | 3.11E-61 | -1.69E-46 |
| MS.gene049633 | MS.gene06869 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene06869 | 0.802331 | 5.90E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene06869 | 0.807949 | 3.94E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene06869 | -0.804925 | 1.71E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene06869 | 0.804173 | 2.45E-49 | -1.69E-46 |
| MS.gene050505 | MS.gene06869 | -0.803603 | 3.22E-49 | -1.69E-46 |
| MS.gene050507 | MS.gene06869 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene050547 | MS.gene06869 | -0.811639 | 6.33E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene06869 | 0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene06869 | 0.805458 | 1.32E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene06869 | 0.818066 | 2.38E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene06869 | 0.860271 | 2.32E-63 | -1.69E-46 |
| MS.gene050747 | MS.gene06869 | 0.802248 | 6.14E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene06869 | 0.835482 | 1.64E-56 | -1.69E-46 |
| MS.gene050781 | MS.gene06869 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene06869 | 0.855559 | 5.82E-62 | -1.69E-46 |
| MS.gene050950 | MS.gene06869 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene06869 | 0.81492 | 1.20E-51 | -1.69E-46 |
| MS.gene05100 | MS.gene06869 | 0.80191 | 7.20E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene06869 | 0.801087 | 1.06E-48 | -1.69E-46 |
| MS.gene051244 | MS.gene06869 | 0.836507 | 8.98E-57 | -1.69E-46 |
| MS.gene051666 | MS.gene06869 | 0.81804 | 2.41E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene06869 | 0.820925 | 5.30E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene06869 | 0.835272 | 1.85E-56 | -1.69E-46 |
| MS.gene051858 | MS.gene06869 | 0.815922 | 7.21E-52 | -1.69E-46 |
| MS.gene052481 | MS.gene06869 | 0.826189 | 3.11E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene06869 | 0.84292 | 1.93E-58 | -1.69E-46 |
| MS.gene052503 | MS.gene06869 | 0.841124 | 5.75E-58 | -1.69E-46 |
| MS.gene052505 | MS.gene06869 | 0.835453 | 1.66E-56 | -1.69E-46 |
| MS.gene052615 | MS.gene06869 | 0.847738 | 9.56E-60 | -1.69E-46 |
| MS.gene052823 | MS.gene06869 | 0.832475 | 9.25E-56 | -1.69E-46 |
| MS.gene052825 | MS.gene06869 | 0.833439 | 5.33E-56 | -1.69E-46 |
| MS.gene052870 | MS.gene06869 | 0.808756 | 2.65E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene06869 | 0.819477 | 1.14E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene06869 | 0.826104 | 3.26E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene06869 | 0.822117 | 2.81E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene06869 | 0.861203 | 1.21E-63 | -1.69E-46 |
| MS.gene053213 | MS.gene06869 | 0.834363 | 3.13E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene06869 | 0.829997 | 3.76E-55 | -1.69E-46 |
| MS.gene053480 | MS.gene06869 | 0.825036 | 5.83E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene06869 | 0.816899 | 4.36E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene06869 | 0.81214 | 4.93E-51 | -1.69E-46 |
| MS.gene054343 | MS.gene06869 | 0.818517 | 1.88E-52 | -1.69E-46 |
| MS.gene054344 | MS.gene06869 | 0.809019 | 2.33E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene06869 | 0.856422 | 3.25E-62 | -1.69E-46 |
| MS.gene054642 | MS.gene06869 | 0.821602 | 3.70E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene06869 | 0.823264 | 1.52E-53 | -1.69E-46 |
| MS.gene054884 | MS.gene06869 | -0.81507 | 1.12E-51 | -1.69E-46 |
| MS.gene054927 | MS.gene06869 | 0.826943 | 2.06E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene06869 | 0.805437 | 1.34E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene06869 | 0.861322 | 1.11E-63 | -1.69E-46 |
| MS.gene055289 | MS.gene06869 | 0.83026 | 3.25E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene06869 | 0.850475 | 1.66E-60 | -1.69E-46 |
| MS.gene055370 | MS.gene06869 | 0.841238 | 5.36E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene06869 | 0.823243 | 1.54E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene06869 | 0.832671 | 8.27E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene06869 | 0.822099 | 2.84E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene06869 | 0.803265 | 3.79E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene06869 | 0.82021 | 7.74E-53 | -1.69E-46 |
| MS.gene056351 | MS.gene06869 | 0.817805 | 2.72E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene06869 | 0.833787 | 4.36E-56 | -1.69E-46 |
| MS.gene056610 | MS.gene06869 | 0.803066 | 4.16E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene06869 | 0.801945 | 7.09E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene06869 | 0.813005 | 3.19E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene06869 | 0.805284 | 1.44E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene06869 | 0.817951 | 2.53E-52 | -1.69E-46 |
| MS.gene056877 | MS.gene06869 | 0.845303 | 4.42E-59 | -1.69E-46 |
| MS.gene057048 | MS.gene06869 | 0.829001 | 6.57E-55 | -1.69E-46 |
| MS.gene057196 | MS.gene06869 | 0.990371 | 2.55E-182 | -1.69E-46 |
| MS.gene057331 | MS.gene06869 | 0.817962 | 2.51E-52 | -1.69E-46 |
| MS.gene057332 | MS.gene06869 | 0.881045 | 3.33E-70 | -1.69E-46 |
| MS.gene057416 | MS.gene06869 | 0.834407 | 3.05E-56 | -1.69E-46 |
| MS.gene057658 | MS.gene06869 | 0.877202 | 7.59E-69 | -1.69E-46 |
| MS.gene057831 | MS.gene06869 | 0.816172 | 6.34E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene06869 | 0.813647 | 2.30E-51 | -1.69E-46 |
| MS.gene058338 | MS.gene06869 | 0.82264 | 2.13E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene06869 | 0.808333 | 3.26E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene06869 | 0.860715 | 1.70E-63 | -1.69E-46 |
| MS.gene058444 | MS.gene06869 | 0.813548 | 2.42E-51 | -1.69E-46 |
| MS.gene058544 | MS.gene06869 | 0.852363 | 4.85E-61 | -1.69E-46 |
| MS.gene058723 | MS.gene06869 | 0.819103 | 1.38E-52 | -1.69E-46 |
| MS.gene058746 | MS.gene06869 | 0.839218 | 1.81E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene06869 | 0.874174 | 8.30E-68 | -1.69E-46 |
| MS.gene05883 | MS.gene06869 | 0.806098 | 9.70E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene06869 | 0.835996 | 1.21E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene06869 | 0.861693 | 8.58E-64 | -1.69E-46 |
| MS.gene05914 | MS.gene06869 | 0.825904 | 3.63E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene06869 | 0.801898 | 7.25E-49 | -1.69E-46 |
| MS.gene059512 | MS.gene06869 | 0.827139 | 1.85E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene06869 | 0.850281 | 1.88E-60 | -1.69E-46 |
| MS.gene059718 | MS.gene06869 | 0.838132 | 3.45E-57 | -1.69E-46 |
| MS.gene059756 | MS.gene06869 | 0.844322 | 8.12E-59 | -1.69E-46 |
| MS.gene059858 | MS.gene06869 | 0.802658 | 5.05E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene06869 | 0.818978 | 1.48E-52 | -1.69E-46 |
| MS.gene060469 | MS.gene06869 | 0.822422 | 2.39E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene06869 | 0.806132 | 9.54E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene06869 | 0.823817 | 1.13E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene06869 | 0.813916 | 2.01E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene06869 | 0.859509 | 3.94E-63 | -1.69E-46 |
| MS.gene061150 | MS.gene06869 | 0.867981 | 9.16E-66 | -1.69E-46 |
| MS.gene061231 | MS.gene06869 | 0.81944 | 1.16E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06869.t1 | MTR_3g092040 | 96.983 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 1.23e-168 | 464 |
| MS.gene06869.t1 | MTR_3g092040 | 96.875 | 160 | 5 | 0 | 1 | 160 | 1 | 160 | 1.12e-111 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06869.t1 | AT4G27700 | 78.409 | 176 | 38 | 0 | 52 | 227 | 42 | 217 | 6.09e-102 | 295 |
Find 47 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTACTTGCTAGTCCTTAA+TGG | 0.218285 | 3.1:+74072428 | MS.gene06869:CDS |
| CAATTAACGTGCAAGTTTAC+AGG | 0.264259 | 3.1:+74071571 | MS.gene06869:CDS |
| TTGATCACGTGTACCTTCTA+AGG | 0.292255 | 3.1:-74070764 | None:intergenic |
| AGACGTTGTTGTACCCATTA+AGG | 0.314913 | 3.1:-74072442 | None:intergenic |
| ACCTCCTTGAACTCTGCTTC+TGG | 0.359245 | 3.1:-74071366 | None:intergenic |
| ACTTGCACGTTAATTGCATC+TGG | 0.366259 | 3.1:-74071564 | None:intergenic |
| CTTACTTGCTAGTCCTTAAT+GGG | 0.367095 | 3.1:+74072429 | MS.gene06869:CDS |
| CCACATCATATTTACAATCC+TGG | 0.388007 | 3.1:+74070734 | MS.gene06869:CDS |
| AAATGCAAATGCAGCACGTC+TGG | 0.405189 | 3.1:-74071625 | None:intergenic |
| TGTAAAGCCCACCTTCTAGA+TGG | 0.405275 | 3.1:-74072466 | None:intergenic |
| TGAAGGCGCAGAGCTTCCTT+TGG | 0.408083 | 3.1:-74071309 | None:intergenic |
| ATAATAGTAGCTTGCTCAGC+AGG | 0.410454 | 3.1:+74071811 | MS.gene06869:CDS |
| TCCTGGGTACCTTCCTTAGA+AGG | 0.423883 | 3.1:+74070751 | MS.gene06869:CDS |
| TTTACAGGCTTATAAAAGAA+TGG | 0.431650 | 3.1:+74071586 | MS.gene06869:CDS |
| TGCCACAAGGTCAACAATCT+AGG | 0.445952 | 3.1:+74071860 | MS.gene06869:CDS |
| AAGGCCAGAAGCAGAGTTCA+AGG | 0.467849 | 3.1:+74071362 | MS.gene06869:CDS |
| TAGAAGGTGGGCTTTACAAA+TGG | 0.471246 | 3.1:+74072471 | MS.gene06869:CDS |
| CAGATACCTGGTGACTTGGC+TGG | 0.485918 | 3.1:-74070886 | None:intergenic |
| AGGTAATAGCTGAAGAAGAA+TGG | 0.495632 | 3.1:+74070986 | MS.gene06869:intron |
| CACATCATATTTACAATCCT+GGG | 0.506172 | 3.1:+74070735 | MS.gene06869:CDS |
| CTTGCACGTTAATTGCATCT+GGG | 0.507566 | 3.1:-74071563 | None:intergenic |
| GTACACGTGATCAAAATTCA+TGG | 0.508681 | 3.1:+74070773 | MS.gene06869:CDS |
| CATCTTACACTTGATAAACT+CGG | 0.509099 | 3.1:-74071679 | None:intergenic |
| ATCTTACACTTGATAAACTC+GGG | 0.514723 | 3.1:-74071678 | None:intergenic |
| ACTCCTCTGCTACAGCTGGC+AGG | 0.515472 | 3.1:-74072505 | None:intergenic |
| AGCACGTCTGGCAATGTCCC+AGG | 0.517639 | 3.1:-74071613 | None:intergenic |
| GCTTTACAAATGGTTTAAAG+AGG | 0.544902 | 3.1:+74072481 | MS.gene06869:CDS |
| AACAACGTCTTCCATCTAGA+AGG | 0.547666 | 3.1:+74072455 | MS.gene06869:CDS |
| TTATAAAAGAATGGACAGCC+TGG | 0.552760 | 3.1:+74071595 | MS.gene06869:CDS |
| ATTCACTCCTCTGCTACAGC+TGG | 0.554886 | 3.1:-74072509 | None:intergenic |
| AGAACAGATACCTGGTGACT+TGG | 0.561851 | 3.1:-74070890 | None:intergenic |
| TTGCACGTTAATTGCATCTG+GGG | 0.578396 | 3.1:-74071562 | None:intergenic |
| GGACCTGCCAGCTGTAGCAG+AGG | 0.578953 | 3.1:+74072502 | MS.gene06869:CDS |
| ACAAAACCAGCCAAGTCACC+AGG | 0.585038 | 3.1:+74070880 | MS.gene06869:CDS |
| AACGTCTTCCATCTAGAAGG+TGG | 0.586598 | 3.1:+74072458 | MS.gene06869:CDS |
| TACCTAGATTGTTGACCTTG+TGG | 0.587500 | 3.1:-74071862 | None:intergenic |
| CACAACAGAACTTTGCAAGA+GGG | 0.596863 | 3.1:+74070836 | MS.gene06869:CDS |
| TCACAACAGAACTTTGCAAG+AGG | 0.603824 | 3.1:+74070835 | MS.gene06869:CDS |
| TATAAAAGAATGGACAGCCT+GGG | 0.617323 | 3.1:+74071596 | MS.gene06869:CDS |
| ACCTTCTAAGGAAGGTACCC+AGG | 0.624704 | 3.1:-74070752 | None:intergenic |
| ACGTCTTCCATCTAGAAGGT+GGG | 0.626570 | 3.1:+74072459 | MS.gene06869:CDS |
| CCAGGATTGTAAATATGATG+TGG | 0.629329 | 3.1:-74070734 | None:intergenic |
| TGCACGTTAATTGCATCTGG+GGG | 0.637849 | 3.1:-74071561 | None:intergenic |
| ATAGTAGCTTGCTCAGCAGG+AGG | 0.650338 | 3.1:+74071814 | MS.gene06869:CDS |
| TCACGTGTACCTTCTAAGGA+AGG | 0.660526 | 3.1:-74070760 | None:intergenic |
| CCAACACAAAATCTGCCACA+AGG | 0.681974 | 3.1:+74071847 | MS.gene06869:CDS |
| GCCAGAAGCAGAGTTCAAGG+AGG | 0.748938 | 3.1:+74071365 | MS.gene06869:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTAATTGATTGTAATATA+GGG | + | chr3.1:74071483-74071502 | MS.gene06869:intron | 15.0% |
| !! | AACTAAAAGATTGAAATGTT+TGG | + | chr3.1:74071153-74071172 | MS.gene06869:intron | 20.0% |
| !! | AACTAAATATTTGATTCATG+CGG | + | chr3.1:74071752-74071771 | MS.gene06869:intron | 20.0% |
| !! | ATAATATTCAAATCATCGAT+TGG | + | chr3.1:74072358-74072377 | MS.gene06869:intron | 20.0% |
| !! | GGTTTAATTGATTGTAATAT+AGG | + | chr3.1:74071482-74071501 | MS.gene06869:intron | 20.0% |
| !! | TTATATCACATGTAACAAAT+TGG | - | chr3.1:74072179-74072198 | None:intergenic | 20.0% |
| !!! | AAGACAAATTAGTTCTTTAT+CGG | + | chr3.1:74072218-74072237 | MS.gene06869:intron | 20.0% |
| !!! | CAAAATTATTTTCTTTCTGA+AGG | - | chr3.1:74071329-74071348 | None:intergenic | 20.0% |
| !!! | CAAAGACATTTAAATTTTAG+AGG | + | chr3.1:74072114-74072133 | MS.gene06869:intron | 20.0% |
| ! | AAAATGTAACATGAATGTAC+AGG | - | chr3.1:74071435-74071454 | None:intergenic | 25.0% |
| ! | AAACTTAACTTCACTTTCTT+TGG | + | chr3.1:74070963-74070982 | MS.gene06869:intron | 25.0% |
| ! | AATATAAATGCTAAAGATGC+AGG | - | chr3.1:74071106-74071125 | None:intergenic | 25.0% |
| ! | AGAAGGAAAAAAAAAACTGA+TGG | + | chr3.1:74071511-74071530 | MS.gene06869:intron | 25.0% |
| ! | CTATTTACTAATAAACAGCA+AGG | + | chr3.1:74071192-74071211 | MS.gene06869:intron | 25.0% |
| ! | TATCTTTGATCTAATGTTGT+AGG | + | chr3.1:74071272-74071291 | MS.gene06869:intron | 25.0% |
| ! | TTTACAGGCTTATAAAAGAA+TGG | + | chr3.1:74071586-74071605 | MS.gene06869:CDS | 25.0% |
| ! | TTTCATAATTGCATGAAAAG+TGG | - | chr3.1:74072337-74072356 | None:intergenic | 25.0% |
| !! | ATTTTGTGATTCTTGATGTA+AGG | + | chr3.1:74071343-74071362 | MS.gene06869:CDS | 25.0% |
| !!! | ACATTTAAATTTTAGAGGAC+AGG | + | chr3.1:74072119-74072138 | MS.gene06869:intron | 25.0% |
| !!! | TGTTGTGATTTTTGAGAATT+GGG | - | chr3.1:74070823-74070842 | None:intergenic | 25.0% |
| AAGAATATACAGACCAAAAC+TGG | + | chr3.1:74071997-74072016 | MS.gene06869:intron | 30.0% | |
| AATGTCTTTGAATCTGATGT+TGG | - | chr3.1:74072104-74072123 | None:intergenic | 30.0% | |
| AATGTTGTAGGTAAAAAGTG+TGG | + | chr3.1:74071284-74071303 | MS.gene06869:intron | 30.0% | |
| ATCTTACACTTGATAAACTC+GGG | - | chr3.1:74071681-74071700 | None:intergenic | 30.0% | |
| ATGAGCAATATTGAAAAACC+AGG | - | chr3.1:74071931-74071950 | None:intergenic | 30.0% | |
| ATTTGTCTATGATGAATGCA+GGG | + | chr3.1:74071534-74071553 | MS.gene06869:intron | 30.0% | |
| CACATCATATTTACAATCCT+GGG | + | chr3.1:74070735-74070754 | MS.gene06869:CDS | 30.0% | |
| CATCTTACACTTGATAAACT+CGG | - | chr3.1:74071682-74071701 | None:intergenic | 30.0% | |
| CATGCAATCCAAGTTATTAA+TGG | - | chr3.1:74072266-74072285 | None:intergenic | 30.0% | |
| CATTAATAACTTGGATTGCA+TGG | + | chr3.1:74072264-74072283 | MS.gene06869:intron | 30.0% | |
| GCTTTACAAATGGTTTAAAG+AGG | + | chr3.1:74072481-74072500 | MS.gene06869:CDS | 30.0% | |
| TACTAATAAACAGCAAGGAT+CGG | + | chr3.1:74071197-74071216 | MS.gene06869:intron | 30.0% | |
| TGAGCAATATTGAAAAACCA+GGG | - | chr3.1:74071930-74071949 | None:intergenic | 30.0% | |
| ! | GTATTCTTATTTGTGCATTC+AGG | - | chr3.1:74071084-74071103 | None:intergenic | 30.0% |
| ! | TCACATTTTTGTACTTTCGT+AGG | + | chr3.1:74072393-74072412 | MS.gene06869:intron | 30.0% |
| ! | TGTAATATAGGGTACTAAGA+AGG | + | chr3.1:74071494-74071513 | MS.gene06869:intron | 30.0% |
| ! | TGTCTTTTTATTACTCTCTC+TGG | - | chr3.1:74072204-74072223 | None:intergenic | 30.0% |
| ! | TTATCGGCTAAAATACACAA+TGG | + | chr3.1:74072234-74072253 | MS.gene06869:intron | 30.0% |
| !! | AAATCTTTAAAGTGCTGTGA+CGG | - | chr3.1:74070938-74070957 | None:intergenic | 30.0% |
| !! | CTGTTGTGATTTTTGAGAAT+TGG | - | chr3.1:74070824-74070843 | None:intergenic | 30.0% |
| !!! | GCATTTTTTGGTATTTTCTC+TGG | + | chr3.1:74071642-74071661 | MS.gene06869:CDS | 30.0% |
| AAAGTGCAAACACACTCAAA+AGG | - | chr3.1:74072077-74072096 | None:intergenic | 35.0% | |
| AATTCAAGAAATGCACGTTG+AGG | - | chr3.1:74071711-74071730 | None:intergenic | 35.0% | |
| ACATGAATGTACAGGTACAT+TGG | - | chr3.1:74071427-74071446 | None:intergenic | 35.0% | |
| AGAATTGCTGCTGCAAAAAA+GGG | + | chr3.1:74071020-74071039 | MS.gene06869:CDS | 35.0% | |
| AGGTAATAGCTGAAGAAGAA+TGG | + | chr3.1:74070986-74071005 | MS.gene06869:intron | 35.0% | |
| ATATACAGACCAAAACTGGT+TGG | + | chr3.1:74072001-74072020 | MS.gene06869:intron | 35.0% | |
| ATCACATGTAACAAATTGGC+AGG | - | chr3.1:74072175-74072194 | None:intergenic | 35.0% | |
| CAATTAACGTGCAAGTTTAC+AGG | + | chr3.1:74071571-74071590 | MS.gene06869:CDS | 35.0% | |
| CCACATCATATTTACAATCC+TGG | + | chr3.1:74070734-74070753 | MS.gene06869:CDS | 35.0% | |
| CCAGGATTGTAAATATGATG+TGG | - | chr3.1:74070737-74070756 | None:intergenic | 35.0% | |
| CTTAACTTCACTTTCTTTGG+AGG | + | chr3.1:74070966-74070985 | MS.gene06869:intron | 35.0% | |
| GATTTGTCTATGATGAATGC+AGG | + | chr3.1:74071533-74071552 | MS.gene06869:intron | 35.0% | |
| GTACACGTGATCAAAATTCA+TGG | + | chr3.1:74070773-74070792 | MS.gene06869:CDS | 35.0% | |
| TATAAAAGAATGGACAGCCT+GGG | + | chr3.1:74071596-74071615 | MS.gene06869:CDS | 35.0% | |
| TTATAAAAGAATGGACAGCC+TGG | + | chr3.1:74071595-74071614 | MS.gene06869:CDS | 35.0% | |
| ! | AAATTGTTGCCAACCAGTTT+TGG | - | chr3.1:74072013-74072032 | None:intergenic | 35.0% |
| ! | CTTACTTGCTAGTCCTTAAT+GGG | + | chr3.1:74072429-74072448 | MS.gene06869:CDS | 35.0% |
| ! | TCTAATTTTTCATCGACAGC+TGG | - | chr3.1:74071778-74071797 | None:intergenic | 35.0% |
| AACAACGTCTTCCATCTAGA+AGG | + | chr3.1:74072455-74072474 | MS.gene06869:CDS | 40.0% | |
| ACTTGCACGTTAATTGCATC+TGG | - | chr3.1:74071567-74071586 | None:intergenic | 40.0% | |
| AGACGTTGTTGTACCCATTA+AGG | - | chr3.1:74072445-74072464 | None:intergenic | 40.0% | |
| AGTAACTCAGAACAGATACC+TGG | - | chr3.1:74070901-74070920 | None:intergenic | 40.0% | |
| CACAACAGAACTTTGCAAGA+GGG | + | chr3.1:74070836-74070855 | MS.gene06869:CDS | 40.0% | |
| CATGTAACAAATTGGCAGGA+TGG | - | chr3.1:74072171-74072190 | None:intergenic | 40.0% | |
| CGGCTAAAATACACAATGGA+AGG | + | chr3.1:74072238-74072257 | MS.gene06869:intron | 40.0% | |
| CTTGCACGTTAATTGCATCT+GGG | - | chr3.1:74071566-74071585 | None:intergenic | 40.0% | |
| GAGAATTGCTGCTGCAAAAA+AGG | + | chr3.1:74071019-74071038 | MS.gene06869:CDS | 40.0% | |
| TACATTGGAGCTGGAAAACA+AGG | - | chr3.1:74071412-74071431 | None:intergenic | 40.0% | |
| TACCTAGATTGTTGACCTTG+TGG | - | chr3.1:74071865-74071884 | None:intergenic | 40.0% | |
| TCACAACAGAACTTTGCAAG+AGG | + | chr3.1:74070835-74070854 | MS.gene06869:CDS | 40.0% | |
| TGATATAGCTGAAAGCTGCA+TGG | + | chr3.1:74072305-74072324 | MS.gene06869:intron | 40.0% | |
| TGCAAACACACTCAAAAGGT+GGG | - | chr3.1:74072073-74072092 | None:intergenic | 40.0% | |
| TTGATCACGTGTACCTTCTA+AGG | - | chr3.1:74070767-74070786 | None:intergenic | 40.0% | |
| TTGCACGTTAATTGCATCTG+GGG | - | chr3.1:74071565-74071584 | None:intergenic | 40.0% | |
| ! | CATTTTCTGTGTCTCTCTTG+TGG | + | chr3.1:74071449-74071468 | MS.gene06869:intron | 40.0% |
| ! | GCTTACTTGCTAGTCCTTAA+TGG | + | chr3.1:74072428-74072447 | MS.gene06869:CDS | 40.0% |
| ! | TAGAAGGTGGGCTTTACAAA+TGG | + | chr3.1:74072471-74072490 | MS.gene06869:CDS | 40.0% |
| !! | ATAATAGTAGCTTGCTCAGC+AGG | + | chr3.1:74071811-74071830 | MS.gene06869:CDS | 40.0% |
| !! | GGAAGGTGCCATTAATAACT+TGG | + | chr3.1:74072255-74072274 | MS.gene06869:intron | 40.0% |
| !! | GGATCGGTTTGCGTAAATAA+TGG | - | chr3.1:74072047-74072066 | None:intergenic | 40.0% |
| !!! | CGTGCTGCATTTGCATTTTT+TGG | + | chr3.1:74071630-74071649 | MS.gene06869:CDS | 40.0% |
| AAATGCAAATGCAGCACGTC+TGG | - | chr3.1:74071628-74071647 | None:intergenic | 45.0% | |
| AACACACTCAAAAGGTGGGT+TGG | - | chr3.1:74072069-74072088 | None:intergenic | 45.0% | |
| AACGTCTTCCATCTAGAAGG+TGG | + | chr3.1:74072458-74072477 | MS.gene06869:CDS | 45.0% | |
| ACGTCTTCCATCTAGAAGGT+GGG | + | chr3.1:74072459-74072478 | MS.gene06869:CDS | 45.0% | |
| AGAACAGATACCTGGTGACT+TGG | - | chr3.1:74070893-74070912 | None:intergenic | 45.0% | |
| ATGTACAGGTACATTGGAGC+TGG | - | chr3.1:74071421-74071440 | None:intergenic | 45.0% | |
| CCAACACAAAATCTGCCACA+AGG | + | chr3.1:74071847-74071866 | MS.gene06869:CDS | 45.0% | |
| CTCTCTTGTGGCTTCTACTT+GGG | + | chr3.1:74071461-74071480 | MS.gene06869:intron | 45.0% | |
| GTGCAAACACACTCAAAAGG+TGG | - | chr3.1:74072074-74072093 | None:intergenic | 45.0% | |
| TCTCTCTTGTGGCTTCTACT+TGG | + | chr3.1:74071460-74071479 | MS.gene06869:intron | 45.0% | |
| TGCACGTTAATTGCATCTGG+GGG | - | chr3.1:74071564-74071583 | None:intergenic | 45.0% | |
| TGCCACAAGGTCAACAATCT+AGG | + | chr3.1:74071860-74071879 | MS.gene06869:CDS | 45.0% | |
| TGTAAAGCCCACCTTCTAGA+TGG | - | chr3.1:74072469-74072488 | None:intergenic | 45.0% | |
| ! | ACACACTCAAAAGGTGGGTT+GGG | - | chr3.1:74072068-74072087 | None:intergenic | 45.0% |
| ! | CCTTGTGGCAGATTTTGTGT+TGG | - | chr3.1:74071850-74071869 | None:intergenic | 45.0% |
| ! | GGTAAAAAGTGTGGAGCCAA+AGG | + | chr3.1:74071293-74071312 | MS.gene06869:intron | 45.0% |
| ! | TCACGTGTACCTTCTAAGGA+AGG | - | chr3.1:74070763-74070782 | None:intergenic | 45.0% |
| ! | TGTGCATTCAGGAGAGTATG+CGG | - | chr3.1:74071073-74071092 | None:intergenic | 45.0% |
| AAGGCCAGAAGCAGAGTTCA+AGG | + | chr3.1:74071362-74071381 | MS.gene06869:CDS | 50.0% | |
| ACAAAACCAGCCAAGTCACC+AGG | + | chr3.1:74070880-74070899 | MS.gene06869:CDS | 50.0% | |
| ACCTCCTTGAACTCTGCTTC+TGG | - | chr3.1:74071369-74071388 | None:intergenic | 50.0% | |
| CGTTAATTGCATCTGGGGGA+TGG | - | chr3.1:74071560-74071579 | None:intergenic | 50.0% | |
| TCCTGGGTACCTTCCTTAGA+AGG | + | chr3.1:74070751-74070770 | MS.gene06869:CDS | 50.0% | |
| TGAGCATGCTTTCATCTCCC+TGG | + | chr3.1:74071910-74071929 | MS.gene06869:intron | 50.0% | |
| ! | AGGGAGATGAAAGCATGCTC+AGG | - | chr3.1:74071911-74071930 | None:intergenic | 50.0% |
| ! | GGGAGATGAAAGCATGCTCA+GGG | - | chr3.1:74071910-74071929 | None:intergenic | 50.0% |
| !! | ACCTTCTAAGGAAGGTACCC+AGG | - | chr3.1:74070755-74070774 | None:intergenic | 50.0% |
| !! | ATAGTAGCTTGCTCAGCAGG+AGG | + | chr3.1:74071814-74071833 | MS.gene06869:CDS | 50.0% |
| !! | CTCAAAAGGTGGGTTGGGAT+CGG | - | chr3.1:74072063-74072082 | None:intergenic | 50.0% |
| !!! | TGGTGACTTGGCTGGTTTTG+TGG | - | chr3.1:74070881-74070900 | None:intergenic | 50.0% |
| ATGCGGCGCACAGATGATAG+AGG | - | chr3.1:74071056-74071075 | None:intergenic | 55.0% | |
| GCCAGAAGCAGAGTTCAAGG+AGG | + | chr3.1:74071365-74071384 | MS.gene06869:CDS | 55.0% | |
| ! | CAGATACCTGGTGACTTGGC+TGG | - | chr3.1:74070889-74070908 | None:intergenic | 55.0% |
| ! | TGAAGGCGCAGAGCTTCCTT+TGG | - | chr3.1:74071312-74071331 | None:intergenic | 55.0% |
| ACTCCTCTGCTACAGCTGGC+AGG | - | chr3.1:74072508-74072527 | None:intergenic | 60.0% | |
| AGCACGTCTGGCAATGTCCC+AGG | - | chr3.1:74071616-74071635 | None:intergenic | 60.0% | |
| !!! | CTGGTTTTGTGGCTGCGCTC+TGG | - | chr3.1:74070870-74070889 | None:intergenic | 60.0% |
| GGACCTGCCAGCTGTAGCAG+AGG | + | chr3.1:74072502-74072521 | MS.gene06869:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 74070700 | 74072529 | 74070700 | ID=MS.gene06869 |
| chr3.1 | mRNA | 74070700 | 74072529 | 74070700 | ID=MS.gene06869.t1;Parent=MS.gene06869 |
| chr3.1 | exon | 74070700 | 74070901 | 74070700 | ID=MS.gene06869.t1.exon1;Parent=MS.gene06869.t1 |
| chr3.1 | CDS | 74070700 | 74070901 | 74070700 | ID=cds.MS.gene06869.t1;Parent=MS.gene06869.t1 |
| chr3.1 | exon | 74070995 | 74071041 | 74070995 | ID=MS.gene06869.t1.exon2;Parent=MS.gene06869.t1 |
| chr3.1 | CDS | 74070995 | 74071041 | 74070995 | ID=cds.MS.gene06869.t1;Parent=MS.gene06869.t1 |
| chr3.1 | exon | 74071294 | 74071386 | 74071294 | ID=MS.gene06869.t1.exon3;Parent=MS.gene06869.t1 |
| chr3.1 | CDS | 74071294 | 74071386 | 74071294 | ID=cds.MS.gene06869.t1;Parent=MS.gene06869.t1 |
| chr3.1 | exon | 74071555 | 74071693 | 74071555 | ID=MS.gene06869.t1.exon4;Parent=MS.gene06869.t1 |
| chr3.1 | CDS | 74071555 | 74071693 | 74071555 | ID=cds.MS.gene06869.t1;Parent=MS.gene06869.t1 |
| chr3.1 | exon | 74071779 | 74071881 | 74071779 | ID=MS.gene06869.t1.exon5;Parent=MS.gene06869.t1 |
| chr3.1 | CDS | 74071779 | 74071881 | 74071779 | ID=cds.MS.gene06869.t1;Parent=MS.gene06869.t1 |
| chr3.1 | exon | 74072415 | 74072529 | 74072415 | ID=MS.gene06869.t1.exon6;Parent=MS.gene06869.t1 |
| chr3.1 | CDS | 74072415 | 74072529 | 74072415 | ID=cds.MS.gene06869.t1;Parent=MS.gene06869.t1 |
| Gene Sequence |
| Protein sequence |
