AlfalfaGEDB | MS.gene05059

M. sativa cultivar XinJiangDaYe / MS.gene05059

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05059.t1	XP_003600586.1	100	71	0	0	1	71	1	71	7.50E-31	142.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05059.t1	G7J780	100.0	71	0	0	1	71	1	71	5.4e-31	142.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05059	MS.gene052239	-0.804908	1.72E-49	-1.69E-46
MS.gene05059	MS.gene061796	0.807398	5.16E-50	-1.69E-46
MS.gene05059	MS.gene065069	0.804182	2.44E-49	-1.69E-46
MS.gene05059	MS.gene066513	0.802074	6.67E-49	-1.69E-46
MS.gene05059	MS.gene068028	0.803647	3.15E-49	-1.69E-46
MS.gene05059	MS.gene42653	0.806303	8.78E-50	-1.69E-46
MS.gene05059	MS.gene45281	0.804395	2.20E-49	-1.69E-46
MS.gene05059	MS.gene57360	0.801769	7.70E-49	-1.69E-46
MS.gene05059	MS.gene72748	0.803419	3.52E-49	-1.69E-46
MS.gene05059	MS.gene80201	0.80251	5.42E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05059.t1	MTR_3g063970	100.000	71	0	0	1	71	1	71	4.56e-47	144
MS.gene05059.t1	MTR_3g063970	100.000	48	0	0	1	48	1	48	8.21e-17	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05059.t1	AT3G14430	63.492	63	22	1	9	71	15	76	3.06e-24	86.7

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Find 15 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCAATTCCTTTAAAA+GGG	0.443719	3.4:-65815809	None:intergenic
AAACTCAGCATTTCTCACAA+AGG	0.666973	3.4:-65814801	None:intergenic
ACAAATACTTGATTGTATTC+AGG	0.336136	3.4:-65815755	None:intergenic
AGAAAACAACGATGGCTAGG+CGG	0.694012	3.4:+65814723	None:intergenic
AGAACGAGTCGTTATTGACT+CGG	0.608689	3.4:+65814759	MS.gene05059:CDS
ATTTCTCACAAAGGCGAAAA+TGG	0.321389	3.4:-65814792	None:intergenic
CAAACATCAATTCCTTTAAA+AGG	0.168257	3.4:-65815810	None:intergenic
CAAAGCTCTGGTCCACCACC+AGG	0.488950	3.4:-65815785	None:intergenic
CAAGTATTTGTGAAGAAGCC+TGG	0.508253	3.4:+65815767	MS.gene05059:CDS
CTGGTGGTGGACCAGAGCTT+TGG	0.389186	3.4:+65815786	MS.gene05059:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTGATTCCAATTGGAAT+TGG	+	chr3.4:65815092-65815111	MS.gene05059:intron	30.0%
CATAAAGAGAAAAAACAGAG+AGG	-	chr3.4:65814892-65814911	None:intergenic	30.0%
TGAAATTACAAGACAAACAG+AGG	-	chr3.4:65815683-65815702	None:intergenic	30.0%
TGAAGAAGAAAAGAAAGAAG+AGG	-	chr3.4:65814832-65814851	None:intergenic	30.0%
AAACTCAGCATTTCTCACAA+AGG	-	chr3.4:65814804-65814823	None:intergenic	35.0%
AATTACAAGACAAACAGAGG+AGG	-	chr3.4:65815680-65815699	None:intergenic	35.0%
ACTGATGAAAACAACTTACG+AGG	-	chr3.4:65815270-65815289	None:intergenic	35.0%
ATTACAAGACAAACAGAGGA+GGG	-	chr3.4:65815679-65815698	None:intergenic	35.0%
ATTTCTCACAAAGGCGAAAA+TGG	-	chr3.4:65814795-65814814	None:intergenic	35.0%
GATTACGAGTCTGTTTGAAT+TGG	-	chr3.4:65815344-65815363	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	65814734	65815817	65814734	ID=MS.gene05059
chr3.4	mRNA	65814734	65815817	65814734	ID=MS.gene05059.t1;Parent=MS.gene05059
chr3.4	exon	65814734	65814877	65814734	ID=MS.gene05059.t1.exon1;Parent=MS.gene05059.t1
chr3.4	CDS	65814734	65814877	65814734	ID=cds.MS.gene05059.t1;Parent=MS.gene05059.t1
chr3.4	exon	65815746	65815817	65815746	ID=MS.gene05059.t1.exon2;Parent=MS.gene05059.t1
chr3.4	CDS	65815746	65815817	65815746	ID=cds.MS.gene05059.t1;Parent=MS.gene05059.t1

Gene Sequence

>MS.gene05059

ATGGCTAGGCGGCGAGTCGAGACTCAGAACGAGTCGTTATTGACTCGGATTGTTGATTCCATTTTCGCCTTTGTGAGAAATGCTGAGTTTGAGATCCTCTTCTTTCTTTTCTTCTTCATCGCTTATATTCTCTTCAAAGACATCGTAAGTTTCTTCCTCTCTGTTTTTTCTCTTTATGATTTATGAGCACCCATTTGCATCATTTGTTCAAATTTTCGTTCTTTTTCATGTGGGCATCTTGTTTCTCTTTTAATGTTTGAGAATTTAGGCTAAAATTTTGCATTTTTCGTACTTGATTAGTTACTAAATTGAAAACTGGTTTGATGATTGATTGGATAATTATATCAAAAAGGTAGAGATTCTGATTCCAATTGGAATTGGTATATAGTTTTGATAAGCAGCTTAATTAAAGCGCTTATAGTATAATTGCTTTTGTATAAGCTGTTTCTATAACATAATATGAAATAAAGTCAAACTATTTTCTTGTAAGCTATAAGTTGTTTTTGTAAGTTATCTAGAAGAGTATATAAACACCTCGTAAGTTGTTTTCATCAGTTCTTTCAATCAGATTCACAAATTTATATGTCGGTAGCTAGACTTAAATAAGCCAATTCAAACAGACTCGTAATCATGTTAAATTACAATCAGCATGTTGGCTTTTGGTGTATCATGTATGAACACGGACGCGGATGCGGACATCAGACACGAAACAGACATGGACACGCTGACACCAATAATAATTTGATAAAATAACATAATTCAATGTAATCATATGTGTCGGTGTCGTGTTGGTGTCCGACACCAATGCGTGTCCGACACCGGGACACACCTAATCTGAGAAGGGTCCGTGCTTCATAATTCATTCATATATGGTTGGTTTTGATAAGTGGAAATTTTTGGCAACATGTCATATGTTCTGCATCACAACTTCCACCCCCCACTCCCTCCTCTGTTTGTCTTGTAATTTCACTTTTGGCAATGAGTTTCAATGACTGTTTTGCATAAAATGCAGACATCAAGACCTGAATACAATCAAGTATTTGTGAAGAAGCCTGGTGGTGGACCAGAGCTTTGGCCCTTTTAA

Protein sequence

>MS.gene05059.t1

MARRRVETQNESLLTRIVDSIFAFVRNAEFEILFFLFFFIAYILFKDITSRPEYNQVFVKKPGGGPELWPF