Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80201.t1 | XP_024635413.1 | 99.3 | 275 | 2 | 0 | 1 | 275 | 1 | 275 | 8.70E-160 | 572.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80201.t1 | Q9SKZ2 | 78.0 | 264 | 57 | 1 | 10 | 272 | 6 | 269 | 9.5e-123 | 441.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80201.t1 | B7FJ18 | 99.3 | 275 | 2 | 0 | 1 | 275 | 1 | 275 | 6.3e-160 | 572.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene80201 | 0.848715 | 5.14E-60 | -1.69E-46 |
| MS.gene04918 | MS.gene80201 | 0.836571 | 8.66E-57 | -1.69E-46 |
| MS.gene04919 | MS.gene80201 | 0.827551 | 1.47E-54 | -1.69E-46 |
| MS.gene04920 | MS.gene80201 | 0.831062 | 2.06E-55 | -1.69E-46 |
| MS.gene049227 | MS.gene80201 | 0.802738 | 4.87E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene80201 | 0.823391 | 1.42E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene80201 | 0.861288 | 1.14E-63 | -1.69E-46 |
| MS.gene049350 | MS.gene80201 | 0.83977 | 1.30E-57 | -1.69E-46 |
| MS.gene049368 | MS.gene80201 | 0.853471 | 2.34E-61 | -1.69E-46 |
| MS.gene049411 | MS.gene80201 | 0.804338 | 2.27E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene80201 | 0.84946 | 3.19E-60 | -1.69E-46 |
| MS.gene049680 | MS.gene80201 | 0.811712 | 6.10E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene80201 | 0.864453 | 1.20E-64 | -1.69E-46 |
| MS.gene049807 | MS.gene80201 | 0.906092 | 2.14E-80 | -1.69E-46 |
| MS.gene049983 | MS.gene80201 | 0.852148 | 5.58E-61 | -1.69E-46 |
| MS.gene04998 | MS.gene80201 | 0.846582 | 1.98E-59 | -1.69E-46 |
| MS.gene050224 | MS.gene80201 | 0.80485 | 1.77E-49 | -1.69E-46 |
| MS.gene050238 | MS.gene80201 | 0.800304 | 1.53E-48 | -1.69E-46 |
| MS.gene050359 | MS.gene80201 | 0.854332 | 1.32E-61 | -1.69E-46 |
| MS.gene05035 | MS.gene80201 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene050384 | MS.gene80201 | 0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene80201 | 0.878156 | 3.53E-69 | -1.69E-46 |
| MS.gene050551 | MS.gene80201 | 0.812075 | 5.09E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene80201 | 0.847547 | 1.08E-59 | -1.69E-46 |
| MS.gene050561 | MS.gene80201 | 0.83669 | 8.07E-57 | -1.69E-46 |
| MS.gene050562 | MS.gene80201 | 0.839005 | 2.05E-57 | -1.69E-46 |
| MS.gene05059 | MS.gene80201 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene80201 | 0.880564 | 4.95E-70 | -1.69E-46 |
| MS.gene050654 | MS.gene80201 | 0.83092 | 2.24E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene80201 | 0.825672 | 4.13E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene80201 | 0.824364 | 8.40E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene80201 | 0.825949 | 3.55E-54 | -1.69E-46 |
| MS.gene050931 | MS.gene80201 | 0.818424 | 1.97E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene80201 | 0.892213 | 1.95E-74 | -1.69E-46 |
| MS.gene050955 | MS.gene80201 | 0.810624 | 1.05E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene80201 | 0.834543 | 2.82E-56 | -1.69E-46 |
| MS.gene051019 | MS.gene80201 | 0.818981 | 1.48E-52 | -1.69E-46 |
| MS.gene051043 | MS.gene80201 | 0.885495 | 7.74E-72 | -1.69E-46 |
| MS.gene051201 | MS.gene80201 | 0.8408 | 6.99E-58 | -1.69E-46 |
| MS.gene051226 | MS.gene80201 | 0.81025 | 1.27E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene80201 | 0.885934 | 5.30E-72 | -1.69E-46 |
| MS.gene051279 | MS.gene80201 | 0.830908 | 2.25E-55 | -1.69E-46 |
| MS.gene051343 | MS.gene80201 | 0.858587 | 7.44E-63 | -1.69E-46 |
| MS.gene051365 | MS.gene80201 | 0.800853 | 1.19E-48 | -1.69E-46 |
| MS.gene051381 | MS.gene80201 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene051450 | MS.gene80201 | 0.820332 | 7.25E-53 | -1.69E-46 |
| MS.gene051628 | MS.gene80201 | 0.818451 | 1.95E-52 | -1.69E-46 |
| MS.gene051642 | MS.gene80201 | 0.821141 | 4.73E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene80201 | 0.838806 | 2.31E-57 | -1.69E-46 |
| MS.gene051699 | MS.gene80201 | 0.871936 | 4.67E-67 | -1.69E-46 |
| MS.gene051724 | MS.gene80201 | 0.811464 | 6.91E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene80201 | 0.833101 | 6.47E-56 | -1.69E-46 |
| MS.gene051832 | MS.gene80201 | 0.808862 | 2.51E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene80201 | 0.838418 | 2.91E-57 | -1.69E-46 |
| MS.gene051902 | MS.gene80201 | 0.834232 | 3.38E-56 | -1.69E-46 |
| MS.gene051975 | MS.gene80201 | 0.822124 | 2.80E-53 | -1.69E-46 |
| MS.gene052016 | MS.gene80201 | 0.852456 | 4.56E-61 | -1.69E-46 |
| MS.gene052037 | MS.gene80201 | 0.805894 | 1.07E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene80201 | 0.883281 | 5.12E-71 | -1.69E-46 |
| MS.gene052118 | MS.gene80201 | 0.811392 | 7.16E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene80201 | -0.856668 | 2.75E-62 | -1.69E-46 |
| MS.gene052242 | MS.gene80201 | -0.845914 | 3.02E-59 | -1.69E-46 |
| MS.gene052296 | MS.gene80201 | 0.824602 | 7.39E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene80201 | 0.904 | 1.94E-79 | -1.69E-46 |
| MS.gene052335 | MS.gene80201 | 0.841942 | 3.50E-58 | -1.69E-46 |
| MS.gene052342 | MS.gene80201 | 0.811171 | 8.00E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene80201 | 0.858709 | 6.84E-63 | -1.69E-46 |
| MS.gene052514 | MS.gene80201 | 0.82151 | 3.89E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene80201 | 0.832504 | 9.10E-56 | -1.69E-46 |
| MS.gene052533 | MS.gene80201 | 0.915814 | 3.76E-85 | -1.69E-46 |
| MS.gene052609 | MS.gene80201 | 0.887819 | 1.02E-72 | -1.69E-46 |
| MS.gene052793 | MS.gene80201 | 0.852662 | 3.99E-61 | -1.69E-46 |
| MS.gene052932 | MS.gene80201 | 0.843083 | 1.74E-58 | -1.69E-46 |
| MS.gene053058 | MS.gene80201 | 0.800939 | 1.14E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene80201 | 0.834048 | 3.75E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene80201 | 0.873721 | 1.18E-67 | -1.69E-46 |
| MS.gene053272 | MS.gene80201 | -0.850732 | 1.40E-60 | -1.69E-46 |
| MS.gene053298 | MS.gene80201 | 0.807259 | 5.52E-50 | -1.69E-46 |
| MS.gene053456 | MS.gene80201 | 0.824926 | 6.19E-54 | -1.69E-46 |
| MS.gene05350 | MS.gene80201 | 0.812765 | 3.60E-51 | -1.69E-46 |
| MS.gene053575 | MS.gene80201 | 0.826049 | 3.36E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene80201 | 0.8125 | 4.11E-51 | -1.69E-46 |
| MS.gene053620 | MS.gene80201 | 0.811084 | 8.36E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene80201 | 0.832756 | 7.88E-56 | -1.69E-46 |
| MS.gene053879 | MS.gene80201 | 0.854992 | 8.50E-62 | -1.69E-46 |
| MS.gene053931 | MS.gene80201 | 0.820393 | 7.02E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene80201 | 0.80502 | 1.63E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene80201 | 0.842174 | 3.04E-58 | -1.69E-46 |
| MS.gene054142 | MS.gene80201 | 0.814877 | 1.23E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene80201 | 0.874635 | 5.79E-68 | -1.69E-46 |
| MS.gene054222 | MS.gene80201 | 0.838015 | 3.70E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene80201 | 0.82838 | 9.28E-55 | -1.69E-46 |
| MS.gene054413 | MS.gene80201 | 0.853179 | 2.84E-61 | -1.69E-46 |
| MS.gene05458 | MS.gene80201 | 0.815649 | 8.29E-52 | -1.69E-46 |
| MS.gene054617 | MS.gene80201 | 0.800101 | 1.69E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene80201 | 0.822884 | 1.87E-53 | -1.69E-46 |
| MS.gene054709 | MS.gene80201 | 0.844259 | 8.44E-59 | -1.69E-46 |
| MS.gene054824 | MS.gene80201 | 0.806793 | 6.92E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene80201 | 0.866438 | 2.85E-65 | -1.69E-46 |
| MS.gene054893 | MS.gene80201 | 0.871476 | 6.64E-67 | -1.69E-46 |
| MS.gene054957 | MS.gene80201 | 0.815885 | 7.35E-52 | -1.69E-46 |
| MS.gene055141 | MS.gene80201 | 0.816439 | 5.53E-52 | -1.69E-46 |
| MS.gene055150 | MS.gene80201 | 0.826877 | 2.13E-54 | -1.69E-46 |
| MS.gene055220 | MS.gene80201 | 0.80902 | 2.33E-50 | -1.69E-46 |
| MS.gene055221 | MS.gene80201 | 0.830035 | 3.68E-55 | -1.69E-46 |
| MS.gene055229 | MS.gene80201 | 0.848489 | 5.93E-60 | -1.69E-46 |
| MS.gene055313 | MS.gene80201 | 0.80373 | 3.03E-49 | -1.69E-46 |
| MS.gene055386 | MS.gene80201 | 0.826403 | 2.77E-54 | -1.69E-46 |
| MS.gene05538 | MS.gene80201 | 0.80507 | 1.59E-49 | -1.69E-46 |
| MS.gene05539 | MS.gene80201 | 0.817119 | 3.89E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene80201 | 0.864368 | 1.28E-64 | -1.69E-46 |
| MS.gene055724 | MS.gene80201 | 0.808024 | 3.80E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene80201 | 0.809128 | 2.21E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene80201 | 0.81753 | 3.14E-52 | -1.69E-46 |
| MS.gene056082 | MS.gene80201 | 0.842352 | 2.72E-58 | -1.69E-46 |
| MS.gene056097 | MS.gene80201 | 0.802217 | 6.23E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene80201 | 0.82273 | 2.03E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene80201 | 0.834419 | 3.03E-56 | -1.69E-46 |
| MS.gene056363 | MS.gene80201 | 0.80826 | 3.38E-50 | -1.69E-46 |
| MS.gene056390 | MS.gene80201 | 0.811449 | 6.96E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene80201 | 0.812686 | 3.74E-51 | -1.69E-46 |
| MS.gene056519 | MS.gene80201 | 0.807706 | 4.43E-50 | -1.69E-46 |
| MS.gene056578 | MS.gene80201 | 0.82159 | 3.72E-53 | -1.69E-46 |
| MS.gene056677 | MS.gene80201 | 0.880604 | 4.79E-70 | -1.69E-46 |
| MS.gene056699 | MS.gene80201 | 0.882179 | 1.29E-70 | -1.69E-46 |
| MS.gene05686 | MS.gene80201 | 0.863095 | 3.18E-64 | -1.69E-46 |
| MS.gene056881 | MS.gene80201 | 0.83368 | 4.64E-56 | -1.69E-46 |
| MS.gene056973 | MS.gene80201 | 0.803836 | 2.88E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene80201 | 0.804637 | 1.96E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene80201 | 0.824122 | 9.58E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene80201 | 0.918115 | 2.32E-86 | -1.69E-46 |
| MS.gene057132 | MS.gene80201 | 0.800872 | 1.18E-48 | -1.69E-46 |
| MS.gene057155 | MS.gene80201 | 0.801413 | 9.11E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene80201 | 0.823804 | 1.14E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene80201 | 0.833444 | 5.32E-56 | -1.69E-46 |
| MS.gene057371 | MS.gene80201 | 0.805021 | 1.63E-49 | -1.69E-46 |
| MS.gene057622 | MS.gene80201 | 0.804245 | 2.37E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene80201 | -0.805981 | 1.03E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene80201 | 0.832706 | 8.11E-56 | -1.69E-46 |
| MS.gene057999 | MS.gene80201 | 0.808815 | 2.57E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene80201 | 0.834813 | 2.41E-56 | -1.69E-46 |
| MS.gene058009 | MS.gene80201 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene80201 | 0.826726 | 2.32E-54 | -1.69E-46 |
| MS.gene058149 | MS.gene80201 | 0.850743 | 1.39E-60 | -1.69E-46 |
| MS.gene058159 | MS.gene80201 | 0.862532 | 4.74E-64 | -1.69E-46 |
| MS.gene058261 | MS.gene80201 | 0.825444 | 4.67E-54 | -1.69E-46 |
| MS.gene058279 | MS.gene80201 | 0.820874 | 5.45E-53 | -1.69E-46 |
| MS.gene058289 | MS.gene80201 | 0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene058330 | MS.gene80201 | 0.845046 | 5.18E-59 | -1.69E-46 |
| MS.gene058355 | MS.gene80201 | 0.807803 | 4.23E-50 | -1.69E-46 |
| MS.gene058492 | MS.gene80201 | 0.817102 | 3.92E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene80201 | 0.838014 | 3.70E-57 | -1.69E-46 |
| MS.gene058649 | MS.gene80201 | 0.808515 | 2.98E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene80201 | 0.804444 | 2.15E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene80201 | 0.837016 | 6.66E-57 | -1.69E-46 |
| MS.gene05878 | MS.gene80201 | 0.817036 | 4.06E-52 | -1.69E-46 |
| MS.gene059007 | MS.gene80201 | 0.801245 | 9.86E-49 | -1.69E-46 |
| MS.gene059144 | MS.gene80201 | 0.813928 | 2.00E-51 | -1.69E-46 |
| MS.gene059145 | MS.gene80201 | 0.821253 | 4.46E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene80201 | 0.842711 | 2.19E-58 | -1.69E-46 |
| MS.gene059170 | MS.gene80201 | 0.849327 | 3.47E-60 | -1.69E-46 |
| MS.gene059227 | MS.gene80201 | 0.841216 | 5.43E-58 | -1.69E-46 |
| MS.gene05952 | MS.gene80201 | 0.859524 | 3.90E-63 | -1.69E-46 |
| MS.gene059634 | MS.gene80201 | 0.813665 | 2.28E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene80201 | 0.840631 | 7.74E-58 | -1.69E-46 |
| MS.gene059778 | MS.gene80201 | 0.855661 | 5.43E-62 | -1.69E-46 |
| MS.gene05985 | MS.gene80201 | -0.910102 | 2.72E-82 | -1.69E-46 |
| MS.gene059901 | MS.gene80201 | -0.806756 | 7.05E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene80201 | 0.87098 | 9.68E-67 | -1.69E-46 |
| MS.gene060244 | MS.gene80201 | 0.823477 | 1.36E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene80201 | 0.847931 | 8.46E-60 | -1.69E-46 |
| MS.gene060342 | MS.gene80201 | -0.802693 | 4.97E-49 | -1.69E-46 |
| MS.gene060343 | MS.gene80201 | -0.826038 | 3.38E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene80201 | 0.825173 | 5.42E-54 | -1.69E-46 |
| MS.gene060435 | MS.gene80201 | 0.80018 | 1.63E-48 | -1.69E-46 |
| MS.gene060522 | MS.gene80201 | 0.814672 | 1.37E-51 | -1.69E-46 |
| MS.gene060525 | MS.gene80201 | 0.83483 | 2.39E-56 | -1.69E-46 |
| MS.gene060697 | MS.gene80201 | 0.837339 | 5.51E-57 | -1.69E-46 |
| MS.gene060763 | MS.gene80201 | 0.809635 | 1.72E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene80201 | 0.828587 | 8.28E-55 | -1.69E-46 |
| MS.gene060785 | MS.gene80201 | 0.801847 | 7.42E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene80201 | 0.80577 | 1.14E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene80201 | 0.830421 | 2.96E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene80201 | 0.880745 | 4.26E-70 | -1.69E-46 |
| MS.gene060935 | MS.gene80201 | 0.871932 | 4.69E-67 | -1.69E-46 |
| MS.gene060937 | MS.gene80201 | 0.894252 | 2.94E-75 | -1.69E-46 |
| MS.gene061100 | MS.gene80201 | 0.903965 | 2.01E-79 | -1.69E-46 |
| MS.gene061160 | MS.gene80201 | 0.856404 | 3.29E-62 | -1.69E-46 |
| MS.gene061188 | MS.gene80201 | 0.867365 | 1.44E-65 | -1.69E-46 |
| MS.gene061243 | MS.gene80201 | 0.816269 | 6.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80201.t1 | AT2G32070 | 78.030 | 264 | 57 | 1 | 10 | 272 | 6 | 269 | 8.23e-155 | 432 |
| MS.gene80201.t1 | AT1G80780 | 77.567 | 263 | 59 | 0 | 10 | 272 | 6 | 268 | 6.29e-154 | 430 |
| MS.gene80201.t1 | AT1G80780 | 77.567 | 263 | 59 | 0 | 10 | 272 | 6 | 268 | 6.29e-154 | 430 |
| MS.gene80201.t1 | AT1G80780 | 77.567 | 263 | 59 | 0 | 10 | 272 | 6 | 268 | 6.67e-154 | 431 |
| MS.gene80201.t1 | AT5G10960 | 76.806 | 263 | 61 | 0 | 10 | 272 | 6 | 268 | 6.14e-153 | 428 |
| MS.gene80201.t1 | AT1G15920 | 61.091 | 275 | 101 | 1 | 1 | 269 | 1 | 275 | 9.35e-120 | 344 |
| MS.gene80201.t1 | AT1G15920 | 61.091 | 275 | 101 | 1 | 1 | 269 | 1 | 275 | 9.35e-120 | 344 |
| MS.gene80201.t1 | AT3G44260 | 53.846 | 273 | 118 | 7 | 6 | 271 | 8 | 279 | 2.09e-92 | 275 |
| MS.gene80201.t1 | AT5G22250 | 52.985 | 268 | 118 | 6 | 12 | 271 | 10 | 277 | 4.12e-89 | 266 |
| MS.gene80201.t1 | AT1G06450 | 36.680 | 259 | 146 | 7 | 17 | 270 | 10 | 255 | 2.38e-45 | 156 |
| MS.gene80201.t1 | AT1G61470 | 35.743 | 249 | 140 | 6 | 18 | 260 | 4 | 238 | 3.56e-37 | 133 |
| MS.gene80201.t1 | AT3G44240 | 37.719 | 228 | 128 | 6 | 30 | 254 | 3 | 219 | 9.04e-36 | 128 |
| MS.gene80201.t1 | AT1G27820 | 32.806 | 253 | 154 | 6 | 18 | 265 | 8 | 249 | 4.39e-31 | 117 |
| MS.gene80201.t1 | AT1G27890 | 33.468 | 248 | 149 | 6 | 18 | 260 | 3 | 239 | 1.80e-28 | 110 |
Find 50 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCACAGTGGTTATGATTT+TGG | 0.162019 | 3.4:+92608239 | MS.gene80201:CDS |
| TACTCACAGCTTGTACATTT+AGG | 0.316594 | 3.4:+92608468 | MS.gene80201:CDS |
| GGAATCGACGTGAACAGATT+TGG | 0.350401 | 3.4:+92608161 | MS.gene80201:CDS |
| GAACAAGCTTGCGGAATTGC+TGG | 0.383855 | 3.4:+92608400 | MS.gene80201:CDS |
| AGAGGTATGGAACGATAATC+TGG | 0.393193 | 3.4:+92607797 | MS.gene80201:CDS |
| TTTGACGTGCAGGGCTTTGC+CGG | 0.395764 | 3.4:+92608277 | MS.gene80201:CDS |
| AGTTTCCTGGTGTTGTTCTT+CGG | 0.398208 | 3.4:+92607883 | MS.gene80201:CDS |
| GGCGAAACAGAGAAATATTC+TGG | 0.400040 | 3.4:+92608515 | MS.gene80201:CDS |
| TATACTTATCAACAATTTCA+CGG | 0.412664 | 3.4:-92607839 | None:intergenic |
| AACTATCCGATCCAGCTTGA+TGG | 0.415822 | 3.4:-92608445 | None:intergenic |
| TCTGGTGTGTTGTATGGATT+AGG | 0.418411 | 3.4:+92608533 | MS.gene80201:CDS |
| AAGTTCTGTAACAGTCTTCA+TGG | 0.419529 | 3.4:+92608371 | MS.gene80201:CDS |
| GGTGTTGTTCTTCGGCCTGT+TGG | 0.419609 | 3.4:+92607891 | MS.gene80201:CDS |
| AAATATTCTGGTGTGTTGTA+TGG | 0.424598 | 3.4:+92608527 | MS.gene80201:CDS |
| GGAGAACTTCTGATGTCATC+CGG | 0.426593 | 3.4:+92608182 | MS.gene80201:CDS |
| GTGTTGTTCTTCGGCCTGTT+GGG | 0.429390 | 3.4:+92607892 | MS.gene80201:CDS |
| CGGAATTGCTGGAAGTTGAG+AGG | 0.432657 | 3.4:+92608411 | MS.gene80201:CDS |
| ATGTTGAAGCTGATTCAGTT+AGG | 0.437086 | 3.4:+92607969 | MS.gene80201:CDS |
| TGTTGAATGATAATGTTCAT+TGG | 0.444197 | 3.4:+92608210 | MS.gene80201:CDS |
| ATATGCTTAAAATTCCCAAC+AGG | 0.468744 | 3.4:-92607906 | None:intergenic |
| TGTTTGATATCATACACAAT+CGG | 0.482779 | 3.4:-92608341 | None:intergenic |
| TTGTACATTTAGGAAGTTGA+GGG | 0.486839 | 3.4:+92608478 | MS.gene80201:CDS |
| TTAACGAAGGATTTACAGAA+AGG | 0.493060 | 3.4:+92607756 | MS.gene80201:CDS |
| GTTGAATGATAATGTTCATT+GGG | 0.498652 | 3.4:+92608211 | MS.gene80201:CDS |
| GTTTGATATCATACACAATC+GGG | 0.509746 | 3.4:-92608340 | None:intergenic |
| GCACTGATAGTCCTTGCATC+TGG | 0.511115 | 3.4:+92608033 | MS.gene80201:CDS |
| CGATTCAAATCAGAGAGGTA+TGG | 0.516845 | 3.4:+92607784 | MS.gene80201:CDS |
| GTTGGTGTGTGCCATCAAGC+TGG | 0.516903 | 3.4:+92608434 | MS.gene80201:CDS |
| TCTTAAAATCAATTCCGCAT+TGG | 0.519845 | 3.4:-92608124 | None:intergenic |
| GCGATGGATACAGAGTTTCC+TGG | 0.522554 | 3.4:+92607870 | MS.gene80201:CDS |
| GAGAACTTCTGATGTCATCC+GGG | 0.551352 | 3.4:+92608183 | MS.gene80201:CDS |
| TTTAAGAAGAACAGCGAGCA+AGG | 0.554251 | 3.4:+92608140 | MS.gene80201:CDS |
| CTTGTACATTTAGGAAGTTG+AGG | 0.555789 | 3.4:+92608477 | MS.gene80201:CDS |
| GCTTTGCCGGATACACAAGC+TGG | 0.557400 | 3.4:+92608290 | MS.gene80201:CDS |
| ATGGAACGATAATCTGGAAG+AGG | 0.557973 | 3.4:+92607803 | MS.gene80201:CDS |
| GCAAGGACTATCAGTGCCAC+AGG | 0.564639 | 3.4:-92608027 | None:intergenic |
| TGGTGGTTTGAACAAGCTTG+CGG | 0.579595 | 3.4:+92608391 | MS.gene80201:CDS |
| AAATTGAATTGCCAGATGCA+AGG | 0.592828 | 3.4:-92608044 | None:intergenic |
| TAAGTATAACTATGTTGCGA+TGG | 0.597473 | 3.4:+92607854 | MS.gene80201:CDS |
| TTGCTGGAAGTTGAGAGGGT+TGG | 0.602040 | 3.4:+92608416 | MS.gene80201:CDS |
| ATTATCATTCAACACAATCC+CGG | 0.602210 | 3.4:-92608201 | None:intergenic |
| TTGAGGGAAACATTCTTCAA+CGG | 0.604445 | 3.4:+92608494 | MS.gene80201:CDS |
| ACAGGCCGAAGAACAACACC+AGG | 0.618032 | 3.4:-92607888 | None:intergenic |
| GGAATTGCTGGAAGTTGAGA+GGG | 0.625969 | 3.4:+92608412 | MS.gene80201:CDS |
| GGACTATCAGTGCCACAGGT+AGG | 0.632411 | 3.4:-92608023 | None:intergenic |
| TGAAATGACGGATTTAACGA+AGG | 0.651784 | 3.4:+92607743 | None:intergenic |
| TGTGTGCCATCAAGCTGGAT+CGG | 0.653723 | 3.4:+92608439 | MS.gene80201:CDS |
| TTCTGTAACAGTCTTCATGG+TGG | 0.661335 | 3.4:+92608374 | MS.gene80201:CDS |
| AATGGAAATTTACCTACCTG+TGG | 0.695151 | 3.4:+92608011 | MS.gene80201:CDS |
| AGATTCGATTCAAATCAGAG+AGG | 0.775869 | 3.4:+92607779 | MS.gene80201:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACTTATCAACAATTTCA+CGG | - | chr3.4:92607842-92607861 | None:intergenic | 20.0% |
| ! | TGTTTGATATCATACACAAT+CGG | - | chr3.4:92608344-92608363 | None:intergenic | 25.0% |
| !! | GTTGAATGATAATGTTCATT+GGG | + | chr3.4:92608211-92608230 | MS.gene80201:CDS | 25.0% |
| !! | TGTTGAATGATAATGTTCAT+TGG | + | chr3.4:92608210-92608229 | MS.gene80201:CDS | 25.0% |
| !!! | TTAACTTTTTCTGATGAGAA+TGG | + | chr3.4:92607993-92608012 | MS.gene80201:CDS | 25.0% |
| !!! | TTTTAACTATCAGACTTTGA+AGG | + | chr3.4:92607935-92607954 | MS.gene80201:CDS | 25.0% |
| AAATATTCTGGTGTGTTGTA+TGG | + | chr3.4:92608527-92608546 | MS.gene80201:CDS | 30.0% | |
| ATATGCTTAAAATTCCCAAC+AGG | - | chr3.4:92607909-92607928 | None:intergenic | 30.0% | |
| ATTATCATTCAACACAATCC+CGG | - | chr3.4:92608204-92608223 | None:intergenic | 30.0% | |
| GTTTGATATCATACACAATC+GGG | - | chr3.4:92608343-92608362 | None:intergenic | 30.0% | |
| TAAGTATAACTATGTTGCGA+TGG | + | chr3.4:92607854-92607873 | MS.gene80201:CDS | 30.0% | |
| TCTTAAAATCAATTCCGCAT+TGG | - | chr3.4:92608127-92608146 | None:intergenic | 30.0% | |
| TTAACGAAGGATTTACAGAA+AGG | + | chr3.4:92607756-92607775 | MS.gene80201:CDS | 30.0% | |
| TTGTACATTTAGGAAGTTGA+GGG | + | chr3.4:92608478-92608497 | MS.gene80201:CDS | 30.0% | |
| ! | TTTCACAGTGGTTATGATTT+TGG | + | chr3.4:92608239-92608258 | MS.gene80201:CDS | 30.0% |
| AAAAATCCAGCTTGTGTATC+CGG | - | chr3.4:92608299-92608318 | None:intergenic | 35.0% | |
| AAATTGAATTGCCAGATGCA+AGG | - | chr3.4:92608047-92608066 | None:intergenic | 35.0% | |
| AAGTTCTGTAACAGTCTTCA+TGG | + | chr3.4:92608371-92608390 | MS.gene80201:CDS | 35.0% | |
| AATGGAAATTTACCTACCTG+TGG | + | chr3.4:92608011-92608030 | MS.gene80201:CDS | 35.0% | |
| AGATTCGATTCAAATCAGAG+AGG | + | chr3.4:92607779-92607798 | MS.gene80201:CDS | 35.0% | |
| CTTGTACATTTAGGAAGTTG+AGG | + | chr3.4:92608477-92608496 | MS.gene80201:CDS | 35.0% | |
| TACTCACAGCTTGTACATTT+AGG | + | chr3.4:92608468-92608487 | MS.gene80201:CDS | 35.0% | |
| TTGAGGGAAACATTCTTCAA+CGG | + | chr3.4:92608494-92608513 | MS.gene80201:CDS | 35.0% | |
| ! | ATGTTGAAGCTGATTCAGTT+AGG | + | chr3.4:92607969-92607988 | MS.gene80201:CDS | 35.0% |
| !! | CTGGATTTTTCGATTTGATC+GGG | + | chr3.4:92608309-92608328 | MS.gene80201:CDS | 35.0% |
| !! | GCTGGATTTTTCGATTTGAT+CGG | + | chr3.4:92608308-92608327 | MS.gene80201:CDS | 35.0% |
| ATGGAACGATAATCTGGAAG+AGG | + | chr3.4:92607803-92607822 | MS.gene80201:CDS | 40.0% | |
| CGATTCAAATCAGAGAGGTA+TGG | + | chr3.4:92607784-92607803 | MS.gene80201:CDS | 40.0% | |
| GGCGAAACAGAGAAATATTC+TGG | + | chr3.4:92608515-92608534 | MS.gene80201:CDS | 40.0% | |
| TCTGGTGTGTTGTATGGATT+AGG | + | chr3.4:92608533-92608552 | MS.gene80201:CDS | 40.0% | |
| TTCTGTAACAGTCTTCATGG+TGG | + | chr3.4:92608374-92608393 | MS.gene80201:CDS | 40.0% | |
| TTTAAGAAGAACAGCGAGCA+AGG | + | chr3.4:92608140-92608159 | MS.gene80201:CDS | 40.0% | |
| ! | AGAGGTATGGAACGATAATC+TGG | + | chr3.4:92607797-92607816 | MS.gene80201:CDS | 40.0% |
| !! | AGTTTCCTGGTGTTGTTCTT+CGG | + | chr3.4:92607883-92607902 | MS.gene80201:CDS | 40.0% |
| !! | TTTGAAGCTTTTGACGTGCA+GGG | + | chr3.4:92608268-92608287 | MS.gene80201:CDS | 40.0% |
| !!! | CATTGGGTTACTTTTCACAG+TGG | + | chr3.4:92608227-92608246 | MS.gene80201:CDS | 40.0% |
| !!! | TTTTGAAGCTTTTGACGTGC+AGG | + | chr3.4:92608267-92608286 | MS.gene80201:CDS | 40.0% |
| AACTATCCGATCCAGCTTGA+TGG | - | chr3.4:92608448-92608467 | None:intergenic | 45.0% | |
| GAGAACTTCTGATGTCATCC+GGG | + | chr3.4:92608183-92608202 | MS.gene80201:CDS | 45.0% | |
| GGAATCGACGTGAACAGATT+TGG | + | chr3.4:92608161-92608180 | MS.gene80201:CDS | 45.0% | |
| GGAATTGCTGGAAGTTGAGA+GGG | + | chr3.4:92608412-92608431 | MS.gene80201:CDS | 45.0% | |
| GGAGAACTTCTGATGTCATC+CGG | + | chr3.4:92608182-92608201 | MS.gene80201:CDS | 45.0% | |
| TGGTGGTTTGAACAAGCTTG+CGG | + | chr3.4:92608391-92608410 | MS.gene80201:CDS | 45.0% | |
| CGGAATTGCTGGAAGTTGAG+AGG | + | chr3.4:92608411-92608430 | MS.gene80201:CDS | 50.0% | |
| GAACAAGCTTGCGGAATTGC+TGG | + | chr3.4:92608400-92608419 | MS.gene80201:CDS | 50.0% | |
| GCGATGGATACAGAGTTTCC+TGG | + | chr3.4:92607870-92607889 | MS.gene80201:CDS | 50.0% | |
| TGTGTGCCATCAAGCTGGAT+CGG | + | chr3.4:92608439-92608458 | MS.gene80201:CDS | 50.0% | |
| TTGCTGGAAGTTGAGAGGGT+TGG | + | chr3.4:92608416-92608435 | MS.gene80201:CDS | 50.0% | |
| ! | ATCGAGCTTTTGCGCCAATG+CGG | + | chr3.4:92608110-92608129 | MS.gene80201:CDS | 50.0% |
| ! | GCACTGATAGTCCTTGCATC+TGG | + | chr3.4:92608033-92608052 | MS.gene80201:CDS | 50.0% |
| ! | GTGTTGTTCTTCGGCCTGTT+GGG | + | chr3.4:92607892-92607911 | MS.gene80201:CDS | 50.0% |
| ACAGGCCGAAGAACAACACC+AGG | - | chr3.4:92607891-92607910 | None:intergenic | 55.0% | |
| GCAAGGACTATCAGTGCCAC+AGG | - | chr3.4:92608030-92608049 | None:intergenic | 55.0% | |
| GCTTTGCCGGATACACAAGC+TGG | + | chr3.4:92608290-92608309 | MS.gene80201:CDS | 55.0% | |
| GGACTATCAGTGCCACAGGT+AGG | - | chr3.4:92608026-92608045 | None:intergenic | 55.0% | |
| GTTGGTGTGTGCCATCAAGC+TGG | + | chr3.4:92608434-92608453 | MS.gene80201:CDS | 55.0% | |
| TTTGACGTGCAGGGCTTTGC+CGG | + | chr3.4:92608277-92608296 | MS.gene80201:CDS | 55.0% | |
| !! | GGTGTTGTTCTTCGGCCTGT+TGG | + | chr3.4:92607891-92607910 | MS.gene80201:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92607747 | 92608574 | 92607747 | ID=MS.gene80201 |
| chr3.4 | mRNA | 92607747 | 92608574 | 92607747 | ID=MS.gene80201.t1;Parent=MS.gene80201 |
| chr3.4 | exon | 92607747 | 92608574 | 92607747 | ID=MS.gene80201.t1.exon1;Parent=MS.gene80201.t1 |
| chr3.4 | CDS | 92607747 | 92608574 | 92607747 | ID=cds.MS.gene80201.t1;Parent=MS.gene80201.t1 |
| Gene Sequence |
| Protein sequence |
