Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061796.t1 | XP_013446785.1 | 91.9 | 258 | 17 | 1 | 1 | 258 | 1 | 254 | 2.60E-128 | 468.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061796.t1 | A0A072TTP9 | 91.9 | 258 | 17 | 1 | 1 | 258 | 1 | 254 | 1.9e-128 | 468.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene061796 | 0.800276 | 1.55E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene061796 | 0.839677 | 1.37E-57 | -1.69E-46 |
| MS.gene049283 | MS.gene061796 | 0.825891 | 3.66E-54 | -1.69E-46 |
| MS.gene049404 | MS.gene061796 | 0.808177 | 3.52E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene061796 | 0.825921 | 3.60E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene061796 | 0.821141 | 4.73E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene061796 | 0.803013 | 4.27E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene061796 | 0.805156 | 1.53E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene061796 | 0.806949 | 6.42E-50 | -1.69E-46 |
| MS.gene05059 | MS.gene061796 | 0.807398 | 5.16E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene061796 | 0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene051332 | MS.gene061796 | 0.812021 | 5.23E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene061796 | 0.826754 | 2.28E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene061796 | 0.830237 | 3.29E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene061796 | 0.822746 | 2.01E-53 | -1.69E-46 |
| MS.gene052108 | MS.gene061796 | 0.826299 | 2.93E-54 | -1.69E-46 |
| MS.gene052239 | MS.gene061796 | -0.80674 | 7.10E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene061796 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene061796 | 0.804956 | 1.68E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene061796 | 0.805385 | 1.37E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene061796 | 0.802737 | 4.87E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene061796 | 0.824063 | 9.89E-54 | -1.69E-46 |
| MS.gene052954 | MS.gene061796 | 0.841842 | 3.72E-58 | -1.69E-46 |
| MS.gene053006 | MS.gene061796 | 0.84062 | 7.79E-58 | -1.69E-46 |
| MS.gene053079 | MS.gene061796 | 0.80298 | 4.34E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene061796 | 0.815679 | 8.17E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene061796 | 0.81377 | 2.16E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene061796 | 0.818741 | 1.67E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene061796 | 0.84586 | 3.12E-59 | -1.69E-46 |
| MS.gene054576 | MS.gene061796 | 0.814215 | 1.73E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene061796 | 0.826267 | 2.98E-54 | -1.69E-46 |
| MS.gene054657 | MS.gene061796 | 0.816897 | 4.36E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene061796 | 0.810444 | 1.15E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene061796 | 0.806831 | 6.80E-50 | -1.69E-46 |
| MS.gene055230 | MS.gene061796 | 0.800398 | 1.47E-48 | -1.69E-46 |
| MS.gene055623 | MS.gene061796 | 0.804918 | 1.72E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene061796 | 0.81359 | 2.37E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene061796 | 0.848055 | 7.82E-60 | -1.69E-46 |
| MS.gene056162 | MS.gene061796 | 0.802462 | 5.55E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene061796 | 0.809905 | 1.50E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene061796 | 0.801865 | 7.36E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene061796 | 0.842011 | 3.35E-58 | -1.69E-46 |
| MS.gene056776 | MS.gene061796 | 0.823741 | 1.18E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene061796 | 0.808822 | 2.56E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene061796 | 0.80843 | 3.11E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene061796 | 0.812265 | 4.63E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene061796 | 0.810531 | 1.10E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene061796 | 0.818711 | 1.70E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene061796 | 0.812297 | 4.55E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene061796 | 0.858945 | 5.81E-63 | -1.69E-46 |
| MS.gene057598 | MS.gene061796 | 0.81836 | 2.04E-52 | -1.69E-46 |
| MS.gene057855 | MS.gene061796 | 0.822558 | 2.22E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene061796 | 0.820864 | 5.47E-53 | -1.69E-46 |
| MS.gene058008 | MS.gene061796 | 0.844206 | 8.73E-59 | -1.69E-46 |
| MS.gene058009 | MS.gene061796 | 0.829175 | 5.96E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene061796 | 0.821176 | 4.64E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene061796 | 0.823097 | 1.66E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene061796 | 0.813722 | 2.22E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene061796 | 0.839421 | 1.60E-57 | -1.69E-46 |
| MS.gene059439 | MS.gene061796 | 0.800568 | 1.36E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene061796 | -0.816733 | 4.75E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene061796 | 0.802487 | 5.48E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene061796 | 0.820956 | 5.21E-53 | -1.69E-46 |
| MS.gene060365 | MS.gene061796 | 0.81498 | 1.17E-51 | -1.69E-46 |
| MS.gene060777 | MS.gene061796 | 0.806572 | 7.71E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene061796 | 0.823899 | 1.08E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene061796 | 0.834524 | 2.85E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene061796 | 0.848515 | 5.84E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene061796 | 0.851439 | 8.87E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061796.t1 | MTR_8g090105 | 91.860 | 258 | 17 | 1 | 1 | 258 | 1 | 254 | 1.82e-174 | 483 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061796.t1 | AT3G57360 | 46.087 | 230 | 114 | 5 | 34 | 261 | 21 | 242 | 1.48e-64 | 204 |
| MS.gene061796.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 2.60e-53 | 173 |
| MS.gene061796.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 2.60e-53 | 173 |
| MS.gene061796.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 2.60e-53 | 173 |
| MS.gene061796.t1 | AT3G02370 | 44.848 | 165 | 85 | 2 | 64 | 227 | 1 | 160 | 4.32e-45 | 150 |
Find 67 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAACTGGATTGTGATTT+TGG | 0.090434 | 4.3:+10303289 | MS.gene061796:CDS |
| AAGTCTCTCGGCTACATAAT+TGG | 0.212462 | 4.3:+10301946 | MS.gene061796:CDS |
| CTCTTCATTCCATCTGGCTT+TGG | 0.237765 | 4.3:-10301423 | None:intergenic |
| GACAAGCACAGCAGAAAATT+TGG | 0.239630 | 4.3:-10302186 | None:intergenic |
| GAAATGTACGAAAAGGTTTC+TGG | 0.246659 | 4.3:+10301874 | MS.gene061796:CDS |
| TTAACATGGCAGGTATCTTA+TGG | 0.254358 | 4.3:+10301798 | MS.gene061796:intron |
| CTTTCCATAAGTAAGTTATT+TGG | 0.268545 | 4.3:+10302081 | MS.gene061796:CDS |
| CTTTGCCCAAATCGCAATTC+AGG | 0.274999 | 4.3:+10300642 | MS.gene061796:CDS |
| CTCACCAAATAACTTACTTA+TGG | 0.296788 | 4.3:-10302085 | None:intergenic |
| TTTGACCTGAATTGCGATTT+GGG | 0.324555 | 4.3:-10300647 | None:intergenic |
| TCCCATCTCTTCATTCCATC+TGG | 0.337819 | 4.3:-10301429 | None:intergenic |
| GCTTCAATTTCTTCTCTAGA+AGG | 0.386301 | 4.3:-10303002 | None:intergenic |
| ATGATAACCTGCGCTACAAA+TGG | 0.392220 | 4.3:+10303256 | MS.gene061796:CDS |
| GGAAGATAAATATCAAAATC+TGG | 0.393325 | 4.3:-10302129 | None:intergenic |
| ACTTATGGAAAGCTCGACTT+TGG | 0.418825 | 4.3:-10302070 | None:intergenic |
| AGTCTCTCGGCTACATAATT+GGG | 0.429657 | 4.3:+10301947 | MS.gene061796:CDS |
| AGCAGAAAATTTGGATCACC+TGG | 0.456168 | 4.3:-10302177 | None:intergenic |
| TTCGCTGTCTACGAGATGTA+AGG | 0.463920 | 4.3:-10301830 | None:intergenic |
| CAGGAAGACCGGATGTTGTT+GGG | 0.466673 | 4.3:+10301897 | MS.gene061796:CDS |
| GGGAGCTGTTCGAGGCCTAC+AGG | 0.479326 | 4.3:+10301917 | MS.gene061796:CDS |
| GAACAGCTCCCAACAACATC+CGG | 0.481581 | 4.3:-10301905 | None:intergenic |
| ATGTTGTTGGGAGCTGTTCG+AGG | 0.483585 | 4.3:+10301909 | MS.gene061796:CDS |
| GCAGAGGTTATTGAGAAGAA+TGG | 0.485595 | 4.3:+10301455 | MS.gene061796:CDS |
| TGGGCTCAGTGATCACAAAC+TGG | 0.485634 | 4.3:+10303276 | MS.gene061796:CDS |
| GCAGGAAGACCGGATGTTGT+TGG | 0.493458 | 4.3:+10301896 | MS.gene061796:CDS |
| TATAATAGAAATGTACGAAA+AGG | 0.493873 | 4.3:+10301867 | MS.gene061796:CDS |
| AGCCAGATGGAATGAAGAGA+TGG | 0.498558 | 4.3:+10301427 | MS.gene061796:CDS |
| AAGGTTTCTGGCAGGAAGAC+CGG | 0.499823 | 4.3:+10301886 | MS.gene061796:CDS |
| TTGGGCGGCATAATGTTGCT+TGG | 0.506016 | 4.3:+10301965 | MS.gene061796:CDS |
| TGAAGAGATGGGAATGGCAG+AGG | 0.522087 | 4.3:+10301439 | MS.gene061796:CDS |
| TGATAACCTGCGCTACAAAT+GGG | 0.525231 | 4.3:+10303257 | MS.gene061796:CDS |
| ACTGAGCCCATTTGTAGCGC+AGG | 0.527267 | 4.3:-10303263 | None:intergenic |
| ATTAATGGAAGGAAACAAGT+GGG | 0.544553 | 4.3:+10300511 | None:intergenic |
| GTGACCAGGCAGACTTTCAA+CGG | 0.557808 | 4.3:-10303050 | None:intergenic |
| AGGTTCAGAAAATCTTCTCC+AGG | 0.564329 | 4.3:+10302159 | MS.gene061796:CDS |
| GATTCCGTTGAAAGTCTGCC+TGG | 0.568623 | 4.3:+10303046 | MS.gene061796:CDS |
| TGACCCTTCCTTCTGTGACC+AGG | 0.571599 | 4.3:-10303064 | None:intergenic |
| TCTGCCTGGTCACAGAAGGA+AGG | 0.572718 | 4.3:+10303060 | MS.gene061796:CDS |
| ACAACATCACAATCACCTGC+AGG | 0.573998 | 4.3:-10303328 | None:intergenic |
| ATGGAATGAAGAGATGGGAA+TGG | 0.574705 | 4.3:+10301433 | MS.gene061796:CDS |
| GCCAGATGGAATGAAGAGAT+GGG | 0.580713 | 4.3:+10301428 | MS.gene061796:CDS |
| AAGCAAACAAATAGTAGACA+TGG | 0.583081 | 4.3:+10302044 | MS.gene061796:CDS |
| CTACTGGAATAGTTCGTAGT+GGG | 0.583261 | 4.3:+10301492 | MS.gene061796:CDS |
| AAAGTCTGCCTGGTCACAGA+AGG | 0.586148 | 4.3:+10303056 | MS.gene061796:CDS |
| ACGTCAAATCCAAAGCCAGA+TGG | 0.589896 | 4.3:+10301414 | MS.gene061796:CDS |
| ATATTTATCTTCCAGACAGT+AGG | 0.589908 | 4.3:+10302139 | MS.gene061796:CDS |
| CTCTCGGCTACATAATTGGG+CGG | 0.591627 | 4.3:+10301950 | MS.gene061796:CDS |
| GGCAGGTATCTTATGGAACT+AGG | 0.593964 | 4.3:+10301805 | MS.gene061796:intron |
| TACAGGCACCTCAAGTCTCT+CGG | 0.595258 | 4.3:+10301934 | MS.gene061796:CDS |
| CAAAGTGATCACAAACCTGC+AGG | 0.595322 | 4.3:+10303313 | MS.gene061796:CDS |
| CTGCCTGGTCACAGAAGGAA+GGG | 0.602851 | 4.3:+10303061 | MS.gene061796:CDS |
| GATTAATGGAAGGAAACAAG+TGG | 0.610317 | 4.3:+10300510 | None:intergenic |
| TGTACGAAAAGGTTTCTGGC+AGG | 0.610565 | 4.3:+10301878 | MS.gene061796:CDS |
| TAGCAAGAAACTGAAGGCAA+TGG | 0.617206 | 4.3:+10303357 | MS.gene061796:CDS |
| AAAGAAAGCTGTGGAAGTTG+TGG | 0.630880 | 4.3:+10303231 | MS.gene061796:intron |
| AAGAATGAGATGTGAAGCGA+AGG | 0.634517 | 4.3:-10300622 | None:intergenic |
| GCTCTTGAGAAACAATGTGT+GGG | 0.640117 | 4.3:+10303023 | MS.gene061796:CDS |
| AATAATGTGAAAGAAAGCTG+TGG | 0.640180 | 4.3:+10303222 | MS.gene061796:intron |
| TCTACTGGAATAGTTCGTAG+TGG | 0.645607 | 4.3:+10301491 | MS.gene061796:CDS |
| CTCTTGAGAAACAATGTGTG+GGG | 0.646122 | 4.3:+10303024 | MS.gene061796:CDS |
| AGCAAACAAATAGTAGACAT+GGG | 0.646880 | 4.3:+10302045 | MS.gene061796:CDS |
| GAGAGACTTGAGGTGCCTGT+AGG | 0.647949 | 4.3:-10301932 | None:intergenic |
| TGAACATAGCAAGAAACTGA+AGG | 0.649845 | 4.3:+10303351 | MS.gene061796:CDS |
| GAAGATTTATACTTCAATCG+AGG | 0.653269 | 4.3:+10301514 | MS.gene061796:CDS |
| TTATGTAGCCGAGAGACTTG+AGG | 0.655821 | 4.3:-10301942 | None:intergenic |
| TTAATGGAAGGAAACAAGTG+GGG | 0.680860 | 4.3:+10300512 | None:intergenic |
| AGCTCTTGAGAAACAATGTG+TGG | 0.694534 | 4.3:+10303022 | MS.gene061796:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTTATAGAAAACTA+TGG | - | chr4.3:10301633-10301652 | None:intergenic | 10.0% |
| !! | AGAAACAAATTTAATACTTA+GGG | + | chr4.3:10302738-10302757 | MS.gene061796:intron | 15.0% |
| !! | AGTAAATGATTGTTAATAAA+CGG | + | chr4.3:10301018-10301037 | MS.gene061796:intron | 15.0% |
| !! | ATAAGATATATACAAAAACA+TGG | - | chr4.3:10301559-10301578 | None:intergenic | 15.0% |
| !!! | CTACATAGATTTTTTTTTAA+TGG | - | chr4.3:10302284-10302303 | None:intergenic | 15.0% |
| !!! | TTAAGTTGTTTATAGAAAAA+TGG | - | chr4.3:10300675-10300694 | None:intergenic | 15.0% |
| !!! | TTAATCTAGAAACATATTTT+CGG | - | chr4.3:10302610-10302629 | None:intergenic | 15.0% |
| !!! | TTTTGGAAAATCTATTAATT+TGG | + | chr4.3:10302948-10302967 | MS.gene061796:intron | 15.0% |
| !! | AAGAAACAAAGATAATTGTT+TGG | - | chr4.3:10302858-10302877 | None:intergenic | 20.0% |
| !! | AAGTATTTAAGCATACATTA+TGG | + | chr4.3:10302803-10302822 | MS.gene061796:intron | 20.0% |
| !! | ACAAATGATAAATTAATGTC+AGG | + | chr4.3:10301110-10301129 | MS.gene061796:intron | 20.0% |
| !! | AGAAACAAAGATAATTGTTT+GGG | - | chr4.3:10302857-10302876 | None:intergenic | 20.0% |
| !! | GAGAAACAAATTTAATACTT+AGG | + | chr4.3:10302737-10302756 | MS.gene061796:intron | 20.0% |
| !! | GTAAATGATTGTTAATAAAC+GGG | + | chr4.3:10301019-10301038 | MS.gene061796:intron | 20.0% |
| !! | TATAATAGAAATGTACGAAA+AGG | + | chr4.3:10301867-10301886 | MS.gene061796:CDS | 20.0% |
| !! | TCAAATACTACAAATTCAAT+TGG | - | chr4.3:10300842-10300861 | None:intergenic | 20.0% |
| !! | TCTGAGAAAAATTATCTTTA+AGG | - | chr4.3:10302649-10302668 | None:intergenic | 20.0% |
| !!! | CATTAATTTATCATTTGTTG+TGG | - | chr4.3:10301108-10301127 | None:intergenic | 20.0% |
| !!! | TGTTTGTGAAAATTTTAACA+TGG | + | chr4.3:10301784-10301803 | MS.gene061796:intron | 20.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | + | chr4.3:10301167-10301186 | MS.gene061796:intron | 25.0% |
| ! | AATAGCTGATAAACTAACTT+AGG | + | chr4.3:10300771-10300790 | MS.gene061796:intron | 25.0% |
| ! | AGACAATAAATAAGCCAAAT+AGG | + | chr4.3:10301720-10301739 | MS.gene061796:intron | 25.0% |
| ! | ATAATTGATATCAACTGTTC+AGG | - | chr4.3:10303129-10303148 | None:intergenic | 25.0% |
| ! | ATGATAGTAGAATAATCTGT+AGG | + | chr4.3:10303195-10303214 | MS.gene061796:intron | 25.0% |
| ! | ATTCATACTGATATGATTAG+AGG | - | chr4.3:10302227-10302246 | None:intergenic | 25.0% |
| ! | ATTTAATACTTAGGGTAAGA+AGG | + | chr4.3:10302746-10302765 | MS.gene061796:intron | 25.0% |
| ! | CAGTAGTAAGTAACTATTTA+CGG | - | chr4.3:10301324-10301343 | None:intergenic | 25.0% |
| ! | CTTTCCATAAGTAAGTTATT+TGG | + | chr4.3:10302081-10302100 | MS.gene061796:CDS | 25.0% |
| ! | GGAAGATAAATATCAAAATC+TGG | - | chr4.3:10302132-10302151 | None:intergenic | 25.0% |
| ! | TAATTGATATCAACTGTTCA+GGG | - | chr4.3:10303128-10303147 | None:intergenic | 25.0% |
| ! | TATACATATATGAGTCTGTT+TGG | - | chr4.3:10301077-10301096 | None:intergenic | 25.0% |
| ! | TGAAGCACATAAATTACAAT+AGG | - | chr4.3:10302686-10302705 | None:intergenic | 25.0% |
| ! | TTTAATACTTAGGGTAAGAA+GGG | + | chr4.3:10302747-10302766 | MS.gene061796:intron | 25.0% |
| ! | TTTATGCATGTAATCTGTTA+GGG | + | chr4.3:10302971-10302990 | MS.gene061796:intron | 25.0% |
| !! | GTAGTTATATTTTCTCTGTT+AGG | + | chr4.3:10302569-10302588 | MS.gene061796:intron | 25.0% |
| !! | TCTGACATTTAGATTTTAGA+AGG | + | chr4.3:10301581-10301600 | MS.gene061796:intron | 25.0% |
| !! | TTTTCTCTGTTAGGAATTTA+AGG | + | chr4.3:10302578-10302597 | MS.gene061796:intron | 25.0% |
| !!! | ACATTTAGATTTTAGAAGGA+GGG | + | chr4.3:10301585-10301604 | MS.gene061796:intron | 25.0% |
| !!! | GATTCAATGATGCATTTTTT+TGG | + | chr4.3:10301742-10301761 | MS.gene061796:intron | 25.0% |
| !!! | TTTTTTACATTTCATTCACC+AGG | + | chr4.3:10301390-10301409 | MS.gene061796:intron | 25.0% |
| AAGCAAACAAATAGTAGACA+TGG | + | chr4.3:10302044-10302063 | MS.gene061796:CDS | 30.0% | |
| AATAATGTGAAAGAAAGCTG+TGG | + | chr4.3:10303222-10303241 | MS.gene061796:intron | 30.0% | |
| ACAGCTTTCTTTCACATTAT+TGG | - | chr4.3:10303223-10303242 | None:intergenic | 30.0% | |
| ACCTGTTAAGTGTAAGAAAA+AGG | - | chr4.3:10302929-10302948 | None:intergenic | 30.0% | |
| AGCAAACAAATAGTAGACAT+GGG | + | chr4.3:10302045-10302064 | MS.gene061796:CDS | 30.0% | |
| ATATTTATCTTCCAGACAGT+AGG | + | chr4.3:10302139-10302158 | MS.gene061796:CDS | 30.0% | |
| ATCATATTTATGCCTCTGTT+TGG | + | chr4.3:10300743-10300762 | MS.gene061796:intron | 30.0% | |
| ATGCATCATTGAATCCTATT+TGG | - | chr4.3:10301737-10301756 | None:intergenic | 30.0% | |
| CCTGTTAAGTGTAAGAAAAA+GGG | - | chr4.3:10302928-10302947 | None:intergenic | 30.0% | |
| CTCACCAAATAACTTACTTA+TGG | - | chr4.3:10302088-10302107 | None:intergenic | 30.0% | |
| GAAGATTTATACTTCAATCG+AGG | + | chr4.3:10301514-10301533 | MS.gene061796:CDS | 30.0% | |
| GTTTATGCATGTAATCTGTT+AGG | + | chr4.3:10302970-10302989 | MS.gene061796:intron | 30.0% | |
| TAAGTGTAAGAAAAAGGGAA+AGG | - | chr4.3:10302923-10302942 | None:intergenic | 30.0% | |
| TAGAAGTTCTCAAAAACAAG+TGG | + | chr4.3:10302002-10302021 | MS.gene061796:CDS | 30.0% | |
| TATAGAAAACTATGGCCTAA+AGG | - | chr4.3:10301625-10301644 | None:intergenic | 30.0% | |
| TGAGAAGAATGGAAAAATGT+GGG | + | chr4.3:10301466-10301485 | MS.gene061796:CDS | 30.0% | |
| TTATGCATGTAATCTGTTAG+GGG | + | chr4.3:10302972-10302991 | MS.gene061796:intron | 30.0% | |
| TTCAAATAAGTCAGCCTATA+TGG | + | chr4.3:10301257-10301276 | MS.gene061796:intron | 30.0% | |
| TTCAAATCAACACTAAAGCA+GGG | - | chr4.3:10301363-10301382 | None:intergenic | 30.0% | |
| TTGAGAAGAATGGAAAAATG+TGG | + | chr4.3:10301465-10301484 | MS.gene061796:CDS | 30.0% | |
| TTTCAAATCAACACTAAAGC+AGG | - | chr4.3:10301364-10301383 | None:intergenic | 30.0% | |
| ! | AATTTTCATAAGCTATTCCG+AGG | + | chr4.3:10301134-10301153 | MS.gene061796:intron | 30.0% |
| ! | AGAGGCATAAATATGATAGA+GGG | - | chr4.3:10300740-10300759 | None:intergenic | 30.0% |
| ! | ATGTTGTTTATTGTGTTGTG+TGG | + | chr4.3:10302398-10302417 | MS.gene061796:intron | 30.0% |
| ! | CAAGAAATTGATAAGCGTTT+TGG | + | chr4.3:10302715-10302734 | MS.gene061796:intron | 30.0% |
| ! | CTGTTAGGAATTTAAGGTAA+TGG | + | chr4.3:10302584-10302603 | MS.gene061796:intron | 30.0% |
| ! | TTCTTACACTTAACAGGTTT+TGG | + | chr4.3:10302931-10302950 | MS.gene061796:intron | 30.0% |
| !! | GACATTTAGATTTTAGAAGG+AGG | + | chr4.3:10301584-10301603 | MS.gene061796:intron | 30.0% |
| !! | TGTGAAAATTTTAACATGGC+AGG | + | chr4.3:10301788-10301807 | MS.gene061796:intron | 30.0% |
| !!! | AATGATGCATTTTTTTGGCT+AGG | + | chr4.3:10301747-10301766 | MS.gene061796:intron | 30.0% |
| AAACAGAAACCTTTATGCAC+TGG | + | chr4.3:10302368-10302387 | MS.gene061796:intron | 35.0% | |
| AGAAAAAGGGAAAGGAAACT+TGG | - | chr4.3:10302915-10302934 | None:intergenic | 35.0% | |
| AGCTGATAAACTAACTTAGG+TGG | + | chr4.3:10300774-10300793 | MS.gene061796:intron | 35.0% | |
| ATTCCTATGAGTCATGTTCT+CGG | - | chr4.3:10302310-10302329 | None:intergenic | 35.0% | |
| CATGAGCTTATAGCTTATAG+TGG | - | chr4.3:10300998-10301017 | None:intergenic | 35.0% | |
| GAAAAGTCTCACAATCCTTT+AGG | + | chr4.3:10301607-10301626 | MS.gene061796:intron | 35.0% | |
| GAAATGTACGAAAAGGTTTC+TGG | + | chr4.3:10301874-10301893 | MS.gene061796:CDS | 35.0% | |
| GCATAAAGGTTTCTGTTTGT+GGG | - | chr4.3:10302366-10302385 | None:intergenic | 35.0% | |
| GCTTCAATTTCTTCTCTAGA+AGG | - | chr4.3:10303005-10303024 | None:intergenic | 35.0% | |
| TCAAATCAACACTAAAGCAG+GGG | - | chr4.3:10301362-10301381 | None:intergenic | 35.0% | |
| TCACTAGTAAGTCACCATAT+AGG | - | chr4.3:10301274-10301293 | None:intergenic | 35.0% | |
| TGAACATAGCAAGAAACTGA+AGG | + | chr4.3:10303351-10303370 | MS.gene061796:CDS | 35.0% | |
| TGCATAAAGGTTTCTGTTTG+TGG | - | chr4.3:10302367-10302386 | None:intergenic | 35.0% | |
| TTAACATGGCAGGTATCTTA+TGG | + | chr4.3:10301798-10301817 | MS.gene061796:intron | 35.0% | |
| TTTGACCTGAATTGCGATTT+GGG | - | chr4.3:10300650-10300669 | None:intergenic | 35.0% | |
| ! | CACAAACTGGATTGTGATTT+TGG | + | chr4.3:10303289-10303308 | MS.gene061796:CDS | 35.0% |
| ! | CAGAGGCATAAATATGATAG+AGG | - | chr4.3:10300741-10300760 | None:intergenic | 35.0% |
| ! | CCCTTTTTCTTACACTTAAC+AGG | + | chr4.3:10302925-10302944 | MS.gene061796:intron | 35.0% |
| ! | TTTTGACCTGAATTGCGATT+TGG | - | chr4.3:10300651-10300670 | None:intergenic | 35.0% |
| !!! | AGCTATTTTTCACCAAACAG+AGG | - | chr4.3:10300758-10300777 | None:intergenic | 35.0% |
| AAAGAAAGCTGTGGAAGTTG+TGG | + | chr4.3:10303231-10303250 | MS.gene061796:intron | 40.0% | |
| AAGAATGAGATGTGAAGCGA+AGG | - | chr4.3:10300625-10300644 | None:intergenic | 40.0% | |
| AAGTCTCTCGGCTACATAAT+TGG | + | chr4.3:10301946-10301965 | MS.gene061796:CDS | 40.0% | |
| AATACTTAGGGTAAGAAGGG+TGG | + | chr4.3:10302750-10302769 | MS.gene061796:intron | 40.0% | |
| ACTTATGGAAAGCTCGACTT+TGG | - | chr4.3:10302073-10302092 | None:intergenic | 40.0% | |
| AGCAGAAAATTTGGATCACC+TGG | - | chr4.3:10302180-10302199 | None:intergenic | 40.0% | |
| AGCTCTTGAGAAACAATGTG+TGG | + | chr4.3:10303022-10303041 | MS.gene061796:CDS | 40.0% | |
| AGGAAGTTCAACCTTGTCAA+AGG | - | chr4.3:10303099-10303118 | None:intergenic | 40.0% | |
| AGGTTCAGAAAATCTTCTCC+AGG | + | chr4.3:10302159-10302178 | MS.gene061796:CDS | 40.0% | |
| AGTCTCTCGGCTACATAATT+GGG | + | chr4.3:10301947-10301966 | MS.gene061796:CDS | 40.0% | |
| ATACTTAGGGTAAGAAGGGT+GGG | + | chr4.3:10302751-10302770 | MS.gene061796:intron | 40.0% | |
| ATGATAACCTGCGCTACAAA+TGG | + | chr4.3:10303256-10303275 | MS.gene061796:CDS | 40.0% | |
| ATGGAATGAAGAGATGGGAA+TGG | + | chr4.3:10301433-10301452 | MS.gene061796:CDS | 40.0% | |
| ATTTCCACTCTGAGCTAAAG+AGG | + | chr4.3:10303151-10303170 | MS.gene061796:intron | 40.0% | |
| CAAAAACAAGTGGCTCTTGA+AGG | + | chr4.3:10302012-10302031 | MS.gene061796:CDS | 40.0% | |
| CAGTTTCTTTCCCTTTGACA+AGG | + | chr4.3:10303085-10303104 | MS.gene061796:intron | 40.0% | |
| CTACTGGAATAGTTCGTAGT+GGG | + | chr4.3:10301492-10301511 | MS.gene061796:CDS | 40.0% | |
| CTCTTGAGAAACAATGTGTG+GGG | + | chr4.3:10303024-10303043 | MS.gene061796:CDS | 40.0% | |
| GACAAGCACAGCAGAAAATT+TGG | - | chr4.3:10302189-10302208 | None:intergenic | 40.0% | |
| GAGTTGAGGACAAATTTGCA+TGG | - | chr4.3:10302893-10302912 | None:intergenic | 40.0% | |
| GCAGAGGTTATTGAGAAGAA+TGG | + | chr4.3:10301455-10301474 | MS.gene061796:CDS | 40.0% | |
| GCTCTTGAGAAACAATGTGT+GGG | + | chr4.3:10303023-10303042 | MS.gene061796:CDS | 40.0% | |
| GCTTATTTCCATACACACCT+CGG | - | chr4.3:10301154-10301173 | None:intergenic | 40.0% | |
| GGAAAAATGTGGGTATCTAC+TGG | + | chr4.3:10301476-10301495 | MS.gene061796:CDS | 40.0% | |
| GGAAGTTCAACCTTGTCAAA+GGG | - | chr4.3:10303098-10303117 | None:intergenic | 40.0% | |
| GGATGTTTATGTTGCTACCT+GGG | + | chr4.3:10302419-10302438 | MS.gene061796:intron | 40.0% | |
| TACGTAGTTGTGAGATGGTT+CGG | - | chr4.3:10301223-10301242 | None:intergenic | 40.0% | |
| TAGCAAGAAACTGAAGGCAA+TGG | + | chr4.3:10303357-10303376 | MS.gene061796:CDS | 40.0% | |
| TCTACTGGAATAGTTCGTAG+TGG | + | chr4.3:10301491-10301510 | MS.gene061796:CDS | 40.0% | |
| TGATAACCTGCGCTACAAAT+GGG | + | chr4.3:10303257-10303276 | MS.gene061796:CDS | 40.0% | |
| TGGATGTTTATGTTGCTACC+TGG | + | chr4.3:10302418-10302437 | MS.gene061796:intron | 40.0% | |
| TTCAATCGAGGAGACATTGT+AGG | + | chr4.3:10301526-10301545 | MS.gene061796:intron | 40.0% | |
| TTTCCACTCTGAGCTAAAGA+GGG | + | chr4.3:10303152-10303171 | MS.gene061796:intron | 40.0% | |
| ! | AGAAACCTTTATGCACTGGT+AGG | + | chr4.3:10302372-10302391 | MS.gene061796:intron | 40.0% |
| ! | ATTTTCTGCTGTGCTTGTCT+AGG | + | chr4.3:10302190-10302209 | MS.gene061796:CDS | 40.0% |
| ! | GAAACCTTTATGCACTGGTA+GGG | + | chr4.3:10302373-10302392 | MS.gene061796:intron | 40.0% |
| ! | GATTTTCTGAACCTACTGTC+TGG | - | chr4.3:10302153-10302172 | None:intergenic | 40.0% |
| !! | AATTTGCAGCTGTGTCGTTT+GGG | + | chr4.3:10302492-10302511 | MS.gene061796:intron | 40.0% |
| AAGCTATTCCGAGGTGTGTA+TGG | + | chr4.3:10301143-10301162 | MS.gene061796:intron | 45.0% | |
| ACAACATCACAATCACCTGC+AGG | - | chr4.3:10303331-10303350 | None:intergenic | 45.0% | |
| ACGTAGTTGTGAGATGGTTC+GGG | - | chr4.3:10301222-10301241 | None:intergenic | 45.0% | |
| ACGTCAAATCCAAAGCCAGA+TGG | + | chr4.3:10301414-10301433 | MS.gene061796:CDS | 45.0% | |
| AGCCAGATGGAATGAAGAGA+TGG | + | chr4.3:10301427-10301446 | MS.gene061796:CDS | 45.0% | |
| ATGTCCCTACCAGTGCATAA+AGG | - | chr4.3:10302380-10302399 | None:intergenic | 45.0% | |
| CAAAGTGATCACAAACCTGC+AGG | + | chr4.3:10303313-10303332 | MS.gene061796:CDS | 45.0% | |
| CAACCGAGAACATGACTCAT+AGG | + | chr4.3:10302304-10302323 | MS.gene061796:intron | 45.0% | |
| CTTTGCCCAAATCGCAATTC+AGG | + | chr4.3:10300642-10300661 | MS.gene061796:CDS | 45.0% | |
| GAGTGCAAGAATGTAAGTCG+TGG | - | chr4.3:10302342-10302361 | None:intergenic | 45.0% | |
| GCCAGATGGAATGAAGAGAT+GGG | + | chr4.3:10301428-10301447 | MS.gene061796:CDS | 45.0% | |
| GGAAAGGAAACTTGGAGTTG+AGG | - | chr4.3:10302907-10302926 | None:intergenic | 45.0% | |
| GGCAGGTATCTTATGGAACT+AGG | + | chr4.3:10301805-10301824 | MS.gene061796:intron | 45.0% | |
| GTTTATGTTGCTACCTGGGT+GGG | + | chr4.3:10302423-10302442 | MS.gene061796:intron | 45.0% | |
| TACTTAGGGTAAGAAGGGTG+GGG | + | chr4.3:10302752-10302771 | MS.gene061796:intron | 45.0% | |
| TCCCATCTCTTCATTCCATC+TGG | - | chr4.3:10301432-10301451 | None:intergenic | 45.0% | |
| TGACGTACGTAGTTGTGAGA+TGG | - | chr4.3:10301228-10301247 | None:intergenic | 45.0% | |
| TGTTTATGTTGCTACCTGGG+TGG | + | chr4.3:10302422-10302441 | MS.gene061796:intron | 45.0% | |
| TTATGTAGCCGAGAGACTTG+AGG | - | chr4.3:10301945-10301964 | None:intergenic | 45.0% | |
| TTCGCTGTCTACGAGATGTA+AGG | - | chr4.3:10301833-10301852 | None:intergenic | 45.0% | |
| TTTATGTTGCTACCTGGGTG+GGG | + | chr4.3:10302424-10302443 | MS.gene061796:intron | 45.0% | |
| ! | AGATGGTTCGGGAGAGTTTA+TGG | - | chr4.3:10301211-10301230 | None:intergenic | 45.0% |
| ! | CTCTTCATTCCATCTGGCTT+TGG | - | chr4.3:10301426-10301445 | None:intergenic | 45.0% |
| ! | GAATTTGCAGCTGTGTCGTT+TGG | + | chr4.3:10302491-10302510 | MS.gene061796:intron | 45.0% |
| ! | TTTCCCTCTTTAGCTCAGAG+TGG | - | chr4.3:10303158-10303177 | None:intergenic | 45.0% |
| !! | TGTACGAAAAGGTTTCTGGC+AGG | + | chr4.3:10301878-10301897 | MS.gene061796:CDS | 45.0% |
| !!! | AATAAAATATATATTTTCTA+TGG | - | chr4.3:10300903-10300922 | None:intergenic | 5.0% |
| AAAGTCTGCCTGGTCACAGA+AGG | + | chr4.3:10303056-10303075 | MS.gene061796:CDS | 50.0% | |
| AACACTAAAGCAGGGGAAGC+AGG | - | chr4.3:10301355-10301374 | None:intergenic | 50.0% | |
| ACACTAAAGCAGGGGAAGCA+GGG | - | chr4.3:10301354-10301373 | None:intergenic | 50.0% | |
| ATGTTGTTGGGAGCTGTTCG+AGG | + | chr4.3:10301909-10301928 | MS.gene061796:CDS | 50.0% | |
| CAGGAAGACCGGATGTTGTT+GGG | + | chr4.3:10301897-10301916 | MS.gene061796:CDS | 50.0% | |
| CTCTCGGCTACATAATTGGG+CGG | + | chr4.3:10301950-10301969 | MS.gene061796:CDS | 50.0% | |
| GAACAGCTCCCAACAACATC+CGG | - | chr4.3:10301908-10301927 | None:intergenic | 50.0% | |
| GATTCCGTTGAAAGTCTGCC+TGG | + | chr4.3:10303046-10303065 | MS.gene061796:CDS | 50.0% | |
| GGTTGCAACTTGCAAGGTGT+AGG | + | chr4.3:10302453-10302472 | MS.gene061796:intron | 50.0% | |
| GTGACCAGGCAGACTTTCAA+CGG | - | chr4.3:10303053-10303072 | None:intergenic | 50.0% | |
| TACAGGCACCTCAAGTCTCT+CGG | + | chr4.3:10301934-10301953 | MS.gene061796:CDS | 50.0% | |
| TCAACTGTTCAGGGTAGAGC+AGG | - | chr4.3:10303119-10303138 | None:intergenic | 50.0% | |
| TGAAGAGATGGGAATGGCAG+AGG | + | chr4.3:10301439-10301458 | MS.gene061796:CDS | 50.0% | |
| TGCAACTTGCAAGGTGTAGG+CGG | + | chr4.3:10302456-10302475 | MS.gene061796:intron | 50.0% | |
| TGGGCTCAGTGATCACAAAC+TGG | + | chr4.3:10303276-10303295 | MS.gene061796:CDS | 50.0% | |
| TTATGTTGCTACCTGGGTGG+GGG | + | chr4.3:10302425-10302444 | MS.gene061796:intron | 50.0% | |
| TTGGGCGGCATAATGTTGCT+TGG | + | chr4.3:10301965-10301984 | MS.gene061796:CDS | 50.0% | |
| !! | AAGGTTTCTGGCAGGAAGAC+CGG | + | chr4.3:10301886-10301905 | MS.gene061796:CDS | 50.0% |
| !! | GGCTTTGGATTTGACGTTCC+TGG | - | chr4.3:10301411-10301430 | None:intergenic | 50.0% |
| ACTGAGCCCATTTGTAGCGC+AGG | - | chr4.3:10303266-10303285 | None:intergenic | 55.0% | |
| CTGCCTGGTCACAGAAGGAA+GGG | + | chr4.3:10303061-10303080 | MS.gene061796:CDS | 55.0% | |
| GCAACTTGCAAGGTGTAGGC+GGG | + | chr4.3:10302457-10302476 | MS.gene061796:intron | 55.0% | |
| GCAGGAAGACCGGATGTTGT+TGG | + | chr4.3:10301896-10301915 | MS.gene061796:CDS | 55.0% | |
| GGAGGAGGTTGCAACTTGCA+AGG | + | chr4.3:10302447-10302466 | MS.gene061796:intron | 55.0% | |
| TATGTTGCTACCTGGGTGGG+GGG | + | chr4.3:10302426-10302445 | MS.gene061796:intron | 55.0% | |
| TCTGCCTGGTCACAGAAGGA+AGG | + | chr4.3:10303060-10303079 | MS.gene061796:CDS | 55.0% | |
| TGACCCTTCCTTCTGTGACC+AGG | - | chr4.3:10303067-10303086 | None:intergenic | 55.0% | |
| ! | GAGAGACTTGAGGTGCCTGT+AGG | - | chr4.3:10301935-10301954 | None:intergenic | 55.0% |
| !! | GTGTCGTTTGGGAGGGAATG+CGG | + | chr4.3:10302503-10302522 | MS.gene061796:intron | 55.0% |
| !! | TGCAGCTGTGTCGTTTGGGA+GGG | + | chr4.3:10302496-10302515 | MS.gene061796:intron | 55.0% |
| !! | TTGCAGCTGTGTCGTTTGGG+AGG | + | chr4.3:10302495-10302514 | MS.gene061796:intron | 55.0% |
| GGGAGCTGTTCGAGGCCTAC+AGG | + | chr4.3:10301917-10301936 | MS.gene061796:CDS | 65.0% | |
| GTTGCTACCTGGGTGGGGGG+AGG | + | chr4.3:10302429-10302448 | MS.gene061796:intron | 70.0% | |
| GCAACCTCCTCCCCCCACCC+AGG | - | chr4.3:10302439-10302458 | None:intergenic | 75.0% | |
| GCTACCTGGGTGGGGGGAGG+AGG | + | chr4.3:10302432-10302451 | MS.gene061796:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 10300515 | 10303384 | 10300515 | ID=MS.gene061796 |
| chr4.3 | mRNA | 10300515 | 10303384 | 10300515 | ID=MS.gene061796.t1;Parent=MS.gene061796 |
| chr4.3 | exon | 10300515 | 10300663 | 10300515 | ID=MS.gene061796.t1.exon1;Parent=MS.gene061796.t1 |
| chr4.3 | CDS | 10300515 | 10300663 | 10300515 | ID=cds.MS.gene061796.t1;Parent=MS.gene061796.t1 |
| chr4.3 | exon | 10301412 | 10301543 | 10301412 | ID=MS.gene061796.t1.exon2;Parent=MS.gene061796.t1 |
| chr4.3 | CDS | 10301412 | 10301543 | 10301412 | ID=cds.MS.gene061796.t1;Parent=MS.gene061796.t1 |
| chr4.3 | exon | 10301810 | 10302211 | 10301810 | ID=MS.gene061796.t1.exon3;Parent=MS.gene061796.t1 |
| chr4.3 | CDS | 10301810 | 10302211 | 10301810 | ID=cds.MS.gene061796.t1;Parent=MS.gene061796.t1 |
| chr4.3 | exon | 10302992 | 10303082 | 10302992 | ID=MS.gene061796.t1.exon4;Parent=MS.gene061796.t1 |
| chr4.3 | CDS | 10302992 | 10303082 | 10302992 | ID=cds.MS.gene061796.t1;Parent=MS.gene061796.t1 |
| chr4.3 | exon | 10303235 | 10303384 | 10303235 | ID=MS.gene061796.t1.exon5;Parent=MS.gene061796.t1 |
| chr4.3 | CDS | 10303235 | 10303384 | 10303235 | ID=cds.MS.gene061796.t1;Parent=MS.gene061796.t1 |
| Gene Sequence |
| Protein sequence |
