AlfalfaGEDB | MS.gene72748

M. sativa cultivar XinJiangDaYe / MS.gene72748

KEGG: K02183
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72748.t1	XP_003612498.1	96.5	200	7	0	1	200	1	200	6.40E-88	333.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72748.t1	Q93Z27	40.1	197	103	6	14	200	13	204	5.1e-25	115.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72748.t1	G7K424	96.5	200	7	0	1	200	1	200	4.6e-88	333.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene72748	0.801882	7.30E-49	-1.69E-46
MS.gene04919	MS.gene72748	0.814993	1.16E-51	-1.69E-46
MS.gene04920	MS.gene72748	0.831224	1.88E-55	-1.69E-46
MS.gene049254	MS.gene72748	0.804987	1.66E-49	-1.69E-46
MS.gene049283	MS.gene72748	0.886707	2.71E-72	-1.69E-46
MS.gene049419	MS.gene72748	-0.813741	2.20E-51	-1.69E-46
MS.gene049499	MS.gene72748	0.836315	1.01E-56	-1.69E-46
MS.gene049861	MS.gene72748	0.80392	2.77E-49	-1.69E-46
MS.gene04998	MS.gene72748	0.853714	1.99E-61	-1.69E-46
MS.gene049983	MS.gene72748	0.859343	4.42E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72748.t1	MTR_5g025690	96.500	200	7	0	1	200	1	200	3.05e-137	382
MS.gene72748.t1	MTR_7g011010	79.126	206	33	2	1	200	1	202	1.15e-100	290
MS.gene72748.t1	MTR_4g127560	67.582	182	51	2	27	200	17	198	5.48e-75	224
MS.gene72748.t1	MTR_2g023310	82.353	51	9	0	83	133	47	97	1.40e-21	85.1
MS.gene72748.t1	MTR_4g082050	42.063	126	70	2	71	196	17	139	1.95e-21	86.3
MS.gene72748.t1	MTR_7g074240	55.385	65	29	0	131	195	106	170	2.68e-16	73.6
MS.gene72748.t1	MTR_2g098890	27.979	193	114	5	29	196	11	203	1.12e-13	67.4
MS.gene72748.t1	MTR_4g115170	44.595	74	41	0	124	197	145	218	3.22e-13	66.2
MS.gene72748.t1	MTR_4g067270	34.921	126	68	4	85	197	19	143	1.85e-12	62.8
MS.gene72748.t1	MTR_7g089760	47.541	61	32	0	136	196	82	142	2.50e-12	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72748.t1	AT5G39670	46.193	197	91	6	14	200	13	204	1.61e-44	147
MS.gene72748.t1	AT3G29000	60.550	109	41	1	89	197	85	191	6.00e-38	130
MS.gene72748.t1	AT4G20780	56.338	71	28	1	125	195	116	183	2.00e-16	74.3
MS.gene72748.t1	AT3G47480	56.061	66	28	1	131	196	115	179	3.27e-16	73.6
MS.gene72748.t1	AT5G44460	49.425	87	41	1	110	196	92	175	4.97e-16	72.8
MS.gene72748.t1	AT2G43290	41.573	89	51	1	108	196	120	207	9.83e-15	70.1
MS.gene72748.t1	AT3G59440	28.947	190	106	5	29	197	7	188	1.01e-14	69.7
MS.gene72748.t1	AT1G05990	47.692	65	34	0	133	197	80	144	6.29e-14	66.6
MS.gene72748.t1	AT3G07490	45.161	62	34	0	136	197	82	143	8.63e-13	63.5
MS.gene72748.t1	AT4G03290	46.875	64	34	0	133	196	82	145	1.45e-12	63.2

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Find 23 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTTGGAGGAAGTGAAGA+TGG	0.496634	5.3:+15293531	MS.gene72748:CDS
ACTTCATGTTCAACTTTCTT+TGG	0.236848	5.3:+15293217	MS.gene72748:CDS
AGAAAGTGGAGAGATTAAGA+GGG	0.503717	5.3:+15293393	MS.gene72748:CDS
AGAAGTAAAGGGAGAGAAGC+AGG	0.460203	5.3:+15293342	MS.gene72748:CDS
AGATGGATTTATTGATGCAA+AGG	0.523959	5.3:+15293579	MS.gene72748:CDS
ATCTTCACTTCCTCCAAACT+TGG	0.413419	5.3:-15293529	None:intergenic
ATTTGTTTGTCTTATTGAAG+AGG	0.533554	5.3:+15293162	MS.gene72748:CDS
CGGAACGAAGTTGGCAGAGA+AGG	0.517501	5.3:-15293312	None:intergenic
CTAAGTCGCCGGAACGAAGT+TGG	0.464546	5.3:-15293321	None:intergenic
CTTCTCTGCCAACTTCGTTC+CGG	0.421099	5.3:+15293313	MS.gene72748:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCATGTTCAACTTTCTT+TGG	+	chr5.3:15293217-15293236	MS.gene72748:CDS	30.0%
TGAAATCAATTCTTCCATCA+TGG	-	chr5.3:15293693-15293712	None:intergenic	30.0%
AGAAAGTGGAGAGATTAAGA+GGG	+	chr5.3:15293393-15293412	MS.gene72748:CDS	35.0%
TAAGAGGGATGAAGTTGAAA+TGG	+	chr5.3:15293408-15293427	MS.gene72748:CDS	35.0%
TCAAATGTTAGCAGAGAAAG+TGG	+	chr5.3:15293379-15293398	MS.gene72748:CDS	35.0%
AAGTTTGGAGGAAGTGAAGA+TGG	+	chr5.3:15293531-15293550	MS.gene72748:CDS	40.0%
ATCTTCACTTCCTCCAAACT+TGG	-	chr5.3:15293532-15293551	None:intergenic	40.0%
GAGAAAGTGGAGAGATTAAG+AGG	+	chr5.3:15293392-15293411	MS.gene72748:CDS	40.0%
GGATGAAGTTGAAATGGTGA+TGG	+	chr5.3:15293414-15293433	MS.gene72748:CDS	40.0%
TGATGAGAATGAGCCAAGTT+TGG	+	chr5.3:15293516-15293535	MS.gene72748:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	15293148	15293750	15293148	ID=MS.gene72748
chr5.3	mRNA	15293148	15293750	15293148	ID=MS.gene72748.t1;Parent=MS.gene72748
chr5.3	exon	15293148	15293750	15293148	ID=MS.gene72748.t1.exon1;Parent=MS.gene72748.t1
chr5.3	CDS	15293148	15293750	15293148	ID=cds.MS.gene72748.t1;Parent=MS.gene72748.t1

Gene Sequence

>MS.gene72748

ATGGTTTTTAGTCAATTTGTTTGTCTTATTGAAGAGGAGAAGACATCACAGAATGATGATAGCAACTCAACTTCATGTTCAACTTTCTTTGGTTTGATAGATTTTTTCATATATTCAACAGTATTCATCAGAATACAAAAGTTTTTCTCAACTTTTTGGTTTTTCCTTCTCTGCCAACTTCGTTCCGGCGACTTAGAAGTAAAGGGAGAGAAGCAGGTATCAGAAACTGAATCAAATGTTAGCAGAGAAAGTGGAGAGATTAAGAGGGATGAAGTTGAAATGGTGATGGCGAAAATGGGAATTTTTTGCAGCTCAGAAAGTGATGAACTTGATGAAAAATATGGTTCAAATGAACTCTCTGAATTGTTTGATGAGAATGAGCCAAGTTTGGAGGAAGTGAAGATGGCTTTTGATGTTTTTGATGAGAACAAAGATGGATTTATTGATGCAAAGGAATTGCAAAGAGTTATGTGTATTTTGGGATTGAAGGAAGGTTTAGAAGTTAAGAATTGTCAGAAGATGATCAAGAATTTTGATGAAAACCATGATGGAAGAATTGATTTCACTGAATTTGTAAAAATTATGGAAAACAGATTGTGTTGA

Protein sequence

>MS.gene72748.t1

MVFSQFVCLIEEEKTSQNDDSNSTSCSTFFGLIDFFIYSTVFIRIQKFFSTFWFFLLCQLRSGDLEVKGEKQVSETESNVSRESGEIKRDEVEMVMAKMGIFCSSESDELDEKYGSNELSELFDENEPSLEEVKMAFDVFDENKDGFIDAKELQRVMCILGLKEGLEVKNCQKMIKNFDENHDGRIDFTEFVKIMENRLC