Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052452.t1 | KEH27104.1 | 92.9 | 411 | 25 | 1 | 1 | 411 | 1 | 407 | 1.00E-225 | 792.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052452.t1 | P14749 | 76.4 | 368 | 87 | 0 | 42 | 409 | 43 | 410 | 1.7e-171 | 603.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052452.t1 | A0A072UBB6 | 92.9 | 411 | 25 | 1 | 1 | 411 | 1 | 407 | 7.5e-226 | 792.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049391 | MS.gene052452 | PPI |
| MS.gene27501 | MS.gene052452 | PPI |
| MS.gene87684 | MS.gene052452 | PPI |
| MS.gene92763 | MS.gene052452 | PPI |
| MS.gene013419 | MS.gene052452 | PPI |
| MS.gene06516 | MS.gene052452 | PPI |
| MS.gene059347 | MS.gene052452 | PPI |
| MS.gene87685 | MS.gene052452 | PPI |
| MS.gene036941 | MS.gene052452 | PPI |
| MS.gene036942 | MS.gene052452 | PPI |
| MS.gene27500 | MS.gene052452 | PPI |
| MS.gene92764 | MS.gene052452 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052452.t1 | MTR_6g086625 | 93.431 | 411 | 24 | 1 | 1 | 411 | 1 | 408 | 0.0 | 786 |
| MS.gene052452.t1 | MTR_6g086575 | 92.944 | 411 | 25 | 1 | 1 | 411 | 1 | 407 | 0.0 | 785 |
| MS.gene052452.t1 | MTR_1g077480 | 88.406 | 414 | 45 | 1 | 1 | 411 | 1 | 414 | 0.0 | 752 |
| MS.gene052452.t1 | MTR_1g077520 | 78.133 | 407 | 87 | 2 | 2 | 408 | 3 | 407 | 0.0 | 670 |
| MS.gene052452.t1 | MTR_6g069140 | 75.711 | 387 | 92 | 1 | 24 | 408 | 33 | 419 | 0.0 | 623 |
| MS.gene052452.t1 | MTR_1g077520 | 77.545 | 334 | 73 | 2 | 2 | 335 | 3 | 334 | 0.0 | 549 |
| MS.gene052452.t1 | MTR_7g073640 | 59.852 | 406 | 154 | 3 | 5 | 408 | 9 | 407 | 1.36e-180 | 509 |
| MS.gene052452.t1 | MTR_7g073650 | 63.957 | 369 | 131 | 2 | 42 | 408 | 38 | 406 | 1.62e-180 | 508 |
| MS.gene052452.t1 | MTR_3g094160 | 61.995 | 371 | 136 | 3 | 45 | 411 | 59 | 428 | 3.63e-175 | 496 |
| MS.gene052452.t1 | MTR_1g078410 | 59.130 | 230 | 39 | 3 | 1 | 227 | 1 | 178 | 1.23e-80 | 246 |
| MS.gene052452.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 288 | 408 | 101 | 223 | 1.28e-37 | 136 |
| MS.gene052452.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 288 | 408 | 185 | 307 | 1.47e-36 | 135 |
| MS.gene052452.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 288 | 408 | 250 | 372 | 6.21e-36 | 135 |
| MS.gene052452.t1 | MTR_8g089725 | 25.097 | 518 | 257 | 19 | 7 | 409 | 4 | 505 | 2.76e-27 | 114 |
| MS.gene052452.t1 | MTR_8g089735 | 24.903 | 518 | 258 | 19 | 7 | 409 | 4 | 505 | 1.73e-26 | 111 |
| MS.gene052452.t1 | MTR_2g096530 | 26.934 | 349 | 165 | 11 | 55 | 316 | 40 | 385 | 1.61e-21 | 97.4 |
| MS.gene052452.t1 | MTR_3g086580 | 25.313 | 399 | 194 | 14 | 9 | 316 | 4 | 389 | 2.16e-21 | 97.1 |
| MS.gene052452.t1 | MTR_8g089745 | 25.505 | 396 | 194 | 14 | 7 | 317 | 4 | 383 | 4.25e-21 | 95.5 |
| MS.gene052452.t1 | MTR_8g089745 | 25.505 | 396 | 194 | 14 | 7 | 317 | 4 | 383 | 1.07e-20 | 94.7 |
| MS.gene052452.t1 | MTR_8g089740 | 25.316 | 395 | 193 | 15 | 9 | 317 | 1 | 379 | 1.58e-19 | 91.3 |
| MS.gene052452.t1 | MTR_3g086580 | 29.609 | 179 | 97 | 6 | 165 | 316 | 26 | 202 | 1.70e-13 | 72.4 |
| MS.gene052452.t1 | MTR_3g094180 | 47.945 | 73 | 32 | 2 | 321 | 387 | 7 | 79 | 3.53e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052452.t1 | AT5G08370 | 71.164 | 378 | 108 | 1 | 35 | 411 | 19 | 396 | 0.0 | 587 |
| MS.gene052452.t1 | AT5G08370 | 72.404 | 366 | 101 | 0 | 46 | 411 | 5 | 370 | 0.0 | 584 |
| MS.gene052452.t1 | AT5G08380 | 59.951 | 407 | 160 | 2 | 3 | 408 | 4 | 408 | 0.0 | 514 |
| MS.gene052452.t1 | AT3G56310 | 58.531 | 422 | 159 | 6 | 2 | 409 | 11 | 430 | 1.04e-178 | 505 |
| MS.gene052452.t1 | AT3G56310 | 54.976 | 422 | 150 | 7 | 2 | 409 | 11 | 406 | 5.48e-160 | 457 |
| MS.gene052452.t1 | AT5G08380 | 61.587 | 315 | 119 | 1 | 3 | 317 | 4 | 316 | 1.16e-144 | 414 |
| MS.gene052452.t1 | AT3G26380 | 25.788 | 349 | 169 | 12 | 55 | 316 | 42 | 387 | 9.31e-21 | 94.4 |
| MS.gene052452.t1 | AT3G26380 | 25.788 | 349 | 169 | 12 | 55 | 316 | 42 | 387 | 2.49e-20 | 93.6 |
Find 96 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATCTTAGTGGACATTT+TGG | 0.164320 | 6.1:+75411328 | None:intergenic |
| TAGTTGATGCAAGAGATTTA+TGG | 0.246206 | 6.1:-75408589 | MS.gene052452:CDS |
| ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 6.1:-75410199 | MS.gene052452:CDS |
| TCAACACTATCATTGGTTTC+GGG | 0.266635 | 6.1:-75408472 | MS.gene052452:CDS |
| ACAAAGTAGCAGTGGTCTTA+TGG | 0.274504 | 6.1:-75408679 | MS.gene052452:CDS |
| ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 6.1:-75409295 | MS.gene052452:CDS |
| GGGTACAAGTATATCAATTT+AGG | 0.295779 | 6.1:-75410883 | MS.gene052452:intron |
| TGCCAAAACATTTGCTTCTT+GGG | 0.296895 | 6.1:-75410198 | MS.gene052452:intron |
| TTAAAGATGTTAGGGAAATA+TGG | 0.303082 | 6.1:-75410451 | MS.gene052452:intron |
| TTTCCAACTTCGAGCATATC+AGG | 0.305679 | 6.1:+75409341 | None:intergenic |
| CTCAACACTATCATTGGTTT+CGG | 0.310793 | 6.1:-75408473 | MS.gene052452:CDS |
| AAGAGTTATATGTTGCAAAA+TGG | 0.314815 | 6.1:-75411308 | MS.gene052452:CDS |
| ATATTACAACCAACTAATAA+AGG | 0.326535 | 6.1:+75409166 | None:intergenic |
| TTTAATAAGGCTTCACTCAT+TGG | 0.330793 | 6.1:+75409894 | None:intergenic |
| TAGAGTAATGGTTAGATATA+TGG | 0.345694 | 6.1:-75411441 | None:intergenic |
| CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 6.1:+75409288 | None:intergenic |
| AGTTGATGCAAGAGATTTAT+GGG | 0.361924 | 6.1:-75408588 | MS.gene052452:CDS |
| TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 6.1:-75409294 | MS.gene052452:CDS |
| TACCCAAGAAGCAAATGTTT+TGG | 0.367399 | 6.1:+75410196 | None:intergenic |
| TAATAGATGTAAACGACAAA+TGG | 0.370517 | 6.1:-75409509 | MS.gene052452:CDS |
| TATGATAACTGTCACAATAA+TGG | 0.370763 | 6.1:-75410047 | MS.gene052452:CDS |
| TGGAATAGTTGGAACCATTT+CGG | 0.374598 | 6.1:-75411082 | MS.gene052452:CDS |
| CAAAAGCTACAATGATTTAG+AGG | 0.376061 | 6.1:-75408964 | MS.gene052452:intron |
| TATTACAACCAACTAATAAA+GGG | 0.382437 | 6.1:+75409167 | None:intergenic |
| TGATGTTCAGATGGAATAGT+TGG | 0.389098 | 6.1:-75411093 | MS.gene052452:intron |
| GTAGATAAACTTGGAGTTCA+AGG | 0.392836 | 6.1:-75408996 | MS.gene052452:intron |
| CAGGAGATATTAAAGATAAC+TGG | 0.394203 | 6.1:-75409695 | MS.gene052452:CDS |
| AGTGAAGCCTTATTAAAATC+TGG | 0.394521 | 6.1:-75409888 | MS.gene052452:CDS |
| CATATAACTCTTAATCTTAG+TGG | 0.397865 | 6.1:+75411319 | None:intergenic |
| TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 6.1:+75410425 | None:intergenic |
| AAATAGGCCCCTTTATTAGT+TGG | 0.402531 | 6.1:-75409175 | MS.gene052452:intron |
| CATTGATATTGCAACCGAAA+TGG | 0.410209 | 6.1:+75411068 | None:intergenic |
| TAAATGTATGCCTGGATCAC+TGG | 0.412495 | 6.1:-75410237 | MS.gene052452:CDS |
| GCAGCACTCAACACTATCAT+TGG | 0.412913 | 6.1:-75408479 | MS.gene052452:intron |
| TCAACTGGCCTTGCTGCCCT+AGG | 0.416149 | 6.1:-75410904 | MS.gene052452:CDS |
| CACATGAAAGGCTTGAAGTT+GGG | 0.419189 | 6.1:-75410375 | MS.gene052452:CDS |
| GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 6.1:-75411046 | MS.gene052452:intron |
| ATTTCATGTCCCAGTGATCC+AGG | 0.452806 | 6.1:+75410227 | None:intergenic |
| GGAAATAGTTGGAGAACAAC+AGG | 0.462081 | 6.1:-75409714 | MS.gene052452:CDS |
| TTGGGAATCTATTCAGATGC+TGG | 0.462560 | 6.1:-75410357 | MS.gene052452:CDS |
| GACAAATGGGCATCTTATGC+TGG | 0.464580 | 6.1:-75409495 | MS.gene052452:CDS |
| GCTGATGCGATGGTGTCAAC+TGG | 0.466489 | 6.1:-75410919 | MS.gene052452:CDS |
| GATATGCTCGAAGTTGGAAA+TGG | 0.467367 | 6.1:-75409338 | MS.gene052452:CDS |
| TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 6.1:+75409289 | None:intergenic |
| AATAGATGTAAACGACAAAT+GGG | 0.481120 | 6.1:-75409508 | MS.gene052452:CDS |
| CAGCATTTGGGCATTAGCTA+AGG | 0.486215 | 6.1:-75409282 | MS.gene052452:intron |
| TCACATGAAAGGCTTGAAGT+TGG | 0.489584 | 6.1:-75410376 | MS.gene052452:CDS |
| TGTGGTATTGTAGATAAACT+TGG | 0.489705 | 6.1:-75409005 | MS.gene052452:intron |
| AATTGATATACTTGTACCCT+AGG | 0.490789 | 6.1:+75410887 | None:intergenic |
| TCTTCTTCTCTATGTGTGAA+TGG | 0.495440 | 6.1:-75409857 | MS.gene052452:intron |
| AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 6.1:-75410423 | MS.gene052452:CDS |
| GATCCTGATATGCTCGAAGT+TGG | 0.500070 | 6.1:-75409344 | MS.gene052452:CDS |
| ACTTGTAGTAAATGTATGCC+TGG | 0.504914 | 6.1:-75410245 | MS.gene052452:CDS |
| GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 6.1:+75410426 | None:intergenic |
| ATGGTATAAGTGTTAGAGAA+AGG | 0.512588 | 6.1:-75410028 | MS.gene052452:intron |
| ATGCAACAGTAACTGCATCT+TGG | 0.514796 | 6.1:-75408640 | MS.gene052452:CDS |
| AATAAGGCTTCACTCATTGG+TGG | 0.521866 | 6.1:+75409897 | None:intergenic |
| TAATTACCATTCCATCCTCC+AGG | 0.523855 | 6.1:+75409471 | None:intergenic |
| AAGCGAGCAGCTGAAGATGA+TGG | 0.525330 | 6.1:+75411371 | None:intergenic |
| TATATGTTGCAAAATGGACT+TGG | 0.531723 | 6.1:-75411302 | MS.gene052452:CDS |
| CAACTGGCCTTGCTGCCCTA+GGG | 0.535222 | 6.1:-75410903 | MS.gene052452:CDS |
| GAAAGGAAGATCCAGCAACA+TGG | 0.542444 | 6.1:-75409749 | MS.gene052452:CDS |
| CTTATGCTGGACCTGGAGGA+TGG | 0.545149 | 6.1:-75409482 | MS.gene052452:CDS |
| TGGGCATCTTATGCTGGACC+TGG | 0.550800 | 6.1:-75409489 | MS.gene052452:CDS |
| GCTACTTTGTTATTAGTGAG+AGG | 0.550815 | 6.1:+75408692 | None:intergenic |
| GCTCATTATATTCACATGAA+AGG | 0.552415 | 6.1:-75410387 | MS.gene052452:CDS |
| CTATGGAGATAGGTGTGGGC+AGG | 0.555854 | 6.1:-75408716 | MS.gene052452:intron |
| TGGTTGTAATATTCAAGCAA+TGG | 0.558395 | 6.1:-75409155 | MS.gene052452:CDS |
| AAATGTATGCCTGGATCACT+GGG | 0.558577 | 6.1:-75410236 | MS.gene052452:CDS |
| AAACATAGATACCTGTATCT+CGG | 0.568820 | 6.1:+75411035 | None:intergenic |
| TGGGAATCTATTCAGATGCT+GGG | 0.568871 | 6.1:-75410356 | MS.gene052452:intron |
| TATCATTTCAGCTGATGCGA+TGG | 0.569529 | 6.1:-75410929 | MS.gene052452:intron |
| ACTGCATCTTGGTCAGACAT+AGG | 0.575528 | 6.1:-75408629 | MS.gene052452:CDS |
| CAACACTATCATTGGTTTCG+GGG | 0.576577 | 6.1:-75408471 | MS.gene052452:CDS |
| GGAACTTAATCGAGACTCAC+AGG | 0.580260 | 6.1:-75410630 | MS.gene052452:intron |
| TTAGGGAAATATGGTTCCCA+AGG | 0.580295 | 6.1:-75410442 | MS.gene052452:intron |
| CACTAATAACAAAGTAGCAG+TGG | 0.589537 | 6.1:-75408687 | MS.gene052452:CDS |
| AAAGGAAGATCCAGCAACAT+GGG | 0.591497 | 6.1:-75409748 | MS.gene052452:CDS |
| GCTAGAAGCTTGATTCCTGA+AGG | 0.597203 | 6.1:+75410408 | None:intergenic |
| AACACTATCATTGGTTTCGG+GGG | 0.597511 | 6.1:-75408470 | MS.gene052452:CDS |
| GCTGGACCTGGAGGATGGAA+TGG | 0.600529 | 6.1:-75409477 | MS.gene052452:intron |
| ATGCTCGAAGTTGGAAATGG+AGG | 0.603679 | 6.1:-75409335 | MS.gene052452:CDS |
| AAGCCTTATTAAAATCTGGA+AGG | 0.610362 | 6.1:-75409884 | MS.gene052452:CDS |
| ATTACAACCAACTAATAAAG+GGG | 0.610550 | 6.1:+75409168 | None:intergenic |
| GATGGTATAGCATACCCCAT+GGG | 0.612388 | 6.1:+75411269 | None:intergenic |
| ATATTAAAGATAACTGGCAT+CGG | 0.619640 | 6.1:-75409689 | MS.gene052452:intron |
| ACTTGTACCCTAGGGCAGCA+AGG | 0.626170 | 6.1:+75410896 | None:intergenic |
| GAAGTTATTGCAGTAAACCA+AGG | 0.635887 | 6.1:-75409100 | MS.gene052452:intron |
| ATTGATATACTTGTACCCTA+GGG | 0.641607 | 6.1:+75410888 | None:intergenic |
| ATGGTATAGCATACCCCATG+GGG | 0.644504 | 6.1:+75411270 | None:intergenic |
| GCATCTTATGCTGGACCTGG+AGG | 0.645529 | 6.1:-75409486 | MS.gene052452:CDS |
| CAATAATATTCAGCAACACG+AGG | 0.675415 | 6.1:+75411402 | None:intergenic |
| AAATGGAGGCATGACAACAG+AGG | 0.691145 | 6.1:-75409321 | MS.gene052452:CDS |
| TGGTATAGCATACCCCATGG+GGG | 0.692128 | 6.1:+75411271 | None:intergenic |
| TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 6.1:-75408585 | MS.gene052452:intron |
| GGTATAGCATACCCCATGGG+GGG | 0.727686 | 6.1:+75411272 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAACATACAAATTAA+TGG | + | chr6.1:75409266-75409285 | None:intergenic | 10.0% |
| !! | AACAACATAAGATTATAAAT+AGG | + | chr6.1:75409725-75409744 | None:intergenic | 15.0% |
| !! | AGAAAAATTTGAATCAATAT+TGG | + | chr6.1:75409750-75409769 | None:intergenic | 15.0% |
| !! | AGAAAATGAAATATCAATTA+TGG | + | chr6.1:75410037-75410056 | None:intergenic | 15.0% |
| !! | CATCATAAATATAATTGATT+AGG | + | chr6.1:75408731-75408750 | None:intergenic | 15.0% |
| !! | GTATTAATTTCTTCAATAAA+GGG | - | chr6.1:75410788-75410807 | MS.gene052452:intron | 15.0% |
| !! | TATACTTTCATGAATTTAAT+TGG | + | chr6.1:75408702-75408721 | None:intergenic | 15.0% |
| !! | TGAAAAACAATAAATTCATA+TGG | - | chr6.1:75411313-75411332 | MS.gene052452:CDS | 15.0% |
| !! | TGTATTAATTTCTTCAATAA+AGG | - | chr6.1:75410787-75410806 | MS.gene052452:intron | 15.0% |
| !!! | ATTGATTCAAATTTTTCTTT+AGG | - | chr6.1:75409752-75409771 | MS.gene052452:CDS | 15.0% |
| !!! | GTTTTTTTAAACTATTTTAC+TGG | - | chr6.1:75410637-75410656 | MS.gene052452:CDS | 15.0% |
| !!! | TTGATTCAAATTTTTCTTTA+GGG | - | chr6.1:75409753-75409772 | MS.gene052452:CDS | 15.0% |
| !! | AAATTAGTTGGTCATAATAT+AGG | + | chr6.1:75410285-75410304 | None:intergenic | 20.0% |
| !! | AACTGTAAAAATAATAGCTT+AGG | + | chr6.1:75408851-75408870 | None:intergenic | 20.0% |
| !! | ACTGTAAAAATAATAGCTTA+GGG | + | chr6.1:75408850-75408869 | None:intergenic | 20.0% |
| !! | ACTTAAACACCATAAAATAA+AGG | + | chr6.1:75410918-75410937 | None:intergenic | 20.0% |
| !! | ACTTCTTACTAAAAATTCTA+TGG | - | chr6.1:75411106-75411125 | MS.gene052452:intron | 20.0% |
| !! | ATATTACAACCAACTAATAA+AGG | + | chr6.1:75410676-75410695 | None:intergenic | 20.0% |
| !! | ATCTAATATCCAAACATTAA+TGG | + | chr6.1:75410478-75410497 | None:intergenic | 20.0% |
| !! | ATGACAAATATAGATAAAGA+TGG | + | chr6.1:75408591-75408610 | None:intergenic | 20.0% |
| !! | CACATATGAGAAATAAATAT+TGG | + | chr6.1:75410455-75410474 | None:intergenic | 20.0% |
| !! | CTTAAACACCATAAAATAAA+GGG | + | chr6.1:75410917-75410936 | None:intergenic | 20.0% |
| !! | GAATCATAAAAGGAAAAAAA+TGG | + | chr6.1:75408652-75408671 | None:intergenic | 20.0% |
| !! | TATTACAACCAACTAATAAA+GGG | + | chr6.1:75410675-75410694 | None:intergenic | 20.0% |
| !! | TTATATTTATGATGTTCAGA+TGG | - | chr6.1:75408737-75408756 | MS.gene052452:intron | 20.0% |
| !!! | AATTGCTTTTTTGAAACATA+GGG | - | chr6.1:75410067-75410086 | MS.gene052452:CDS | 20.0% |
| !!! | ATAAATTCATATGGTTTTGA+TGG | - | chr6.1:75411322-75411341 | MS.gene052452:CDS | 20.0% |
| !!! | CTATTTTACTGGATTTAAAT+AGG | - | chr6.1:75410648-75410667 | MS.gene052452:intron | 20.0% |
| !!! | TAATTGCTTTTTTGAAACAT+AGG | - | chr6.1:75410066-75410085 | MS.gene052452:CDS | 20.0% |
| !!! | TTTTCTTTCCCTTTATTTTA+TGG | - | chr6.1:75410906-75410925 | MS.gene052452:CDS | 20.0% |
| !!! | TTTTTTTTCAGATGATTGTT+GGG | - | chr6.1:75409185-75409204 | MS.gene052452:intron | 20.0% |
| ! | AAGAGTTATATGTTGCAAAA+TGG | - | chr6.1:75408531-75408550 | MS.gene052452:intron | 25.0% |
| ! | AATAGATGTAAACGACAAAT+GGG | - | chr6.1:75410331-75410350 | MS.gene052452:intron | 25.0% |
| ! | ACAAGTATATCAATTTAGGT+AGG | - | chr6.1:75408960-75408979 | MS.gene052452:intron | 25.0% |
| ! | ACTAAAAATTCTATGGAGAT+AGG | - | chr6.1:75411113-75411132 | MS.gene052452:intron | 25.0% |
| ! | ATATTAAAGATAACTGGCAT+CGG | - | chr6.1:75410150-75410169 | MS.gene052452:intron | 25.0% |
| ! | ATTACAACCAACTAATAAAG+GGG | + | chr6.1:75410674-75410693 | None:intergenic | 25.0% |
| ! | CATATAACTCTTAATCTTAG+TGG | + | chr6.1:75408523-75408542 | None:intergenic | 25.0% |
| ! | CTTTATGTGTGAATCATAAA+AGG | + | chr6.1:75408662-75408681 | None:intergenic | 25.0% |
| ! | TAATAGATGTAAACGACAAA+TGG | - | chr6.1:75410330-75410349 | MS.gene052452:intron | 25.0% |
| ! | TATGATAACTGTCACAATAA+TGG | - | chr6.1:75409792-75409811 | MS.gene052452:intron | 25.0% |
| ! | TATGTTCTTCAAATGCAAAT+AGG | - | chr6.1:75409843-75409862 | MS.gene052452:intron | 25.0% |
| ! | TATTACTTTGTCTCAACAAT+AGG | + | chr6.1:75410605-75410624 | None:intergenic | 25.0% |
| ! | TTAAAGATGTTAGGGAAATA+TGG | - | chr6.1:75409388-75409407 | MS.gene052452:intron | 25.0% |
| ! | TTAACTTTCAACTCAAAACA+TGG | - | chr6.1:75410974-75410993 | MS.gene052452:intron | 25.0% |
| !!! | ATTGCTTTTTTGAAACATAG+GGG | - | chr6.1:75410068-75410087 | MS.gene052452:CDS | 25.0% |
| !!! | GTTTTTTTTCAGATGATTGT+TGG | - | chr6.1:75409184-75409203 | MS.gene052452:intron | 25.0% |
| AAAAGAGACATCGTATAATG+TGG | + | chr6.1:75410202-75410221 | None:intergenic | 30.0% | |
| AAACATAGATACCTGTATCT+CGG | + | chr6.1:75408807-75408826 | None:intergenic | 30.0% | |
| AAAGAGACATCGTATAATGT+GGG | + | chr6.1:75410201-75410220 | None:intergenic | 30.0% | |
| AATTGATATACTTGTACCCT+AGG | + | chr6.1:75408955-75408974 | None:intergenic | 30.0% | |
| AGTATATCAATTTAGGTAGG+TGG | - | chr6.1:75408963-75408982 | MS.gene052452:intron | 30.0% | |
| ATCTATTATAGAAGTCATGC+TGG | + | chr6.1:75410318-75410337 | None:intergenic | 30.0% | |
| ATGGTATAAGTGTTAGAGAA+AGG | - | chr6.1:75409811-75409830 | MS.gene052452:intron | 30.0% | |
| ATTGATATACTTGTACCCTA+GGG | + | chr6.1:75408954-75408973 | None:intergenic | 30.0% | |
| CAAAAGCTACAATGATTTAG+AGG | - | chr6.1:75410875-75410894 | MS.gene052452:intron | 30.0% | |
| CAGGAGATATTAAAGATAAC+TGG | - | chr6.1:75410144-75410163 | MS.gene052452:intron | 30.0% | |
| CTGACAAGTTAAAGATGTTA+GGG | - | chr6.1:75409380-75409399 | MS.gene052452:intron | 30.0% | |
| GCTCATTATATTCACATGAA+AGG | - | chr6.1:75409452-75409471 | MS.gene052452:intron | 30.0% | |
| GGGGATGAAATAAAATTAGT+TGG | + | chr6.1:75410297-75410316 | None:intergenic | 30.0% | |
| GGGTACAAGTATATCAATTT+AGG | - | chr6.1:75408956-75408975 | MS.gene052452:intron | 30.0% | |
| TCTATTATAGAAGTCATGCT+GGG | + | chr6.1:75410317-75410336 | None:intergenic | 30.0% | |
| TGGTTGTAATATTCAAGCAA+TGG | - | chr6.1:75410684-75410703 | MS.gene052452:intron | 30.0% | |
| TGTGGTATTGTAGATAAACT+TGG | - | chr6.1:75410834-75410853 | MS.gene052452:intron | 30.0% | |
| TTTAATAAGGCTTCACTCAT+TGG | + | chr6.1:75409948-75409967 | None:intergenic | 30.0% | |
| TTTCATACGTTGTGTAAATC+AGG | - | chr6.1:75409916-75409935 | MS.gene052452:intron | 30.0% | |
| ! | AGTTGATGCAAGAGATTTAT+GGG | - | chr6.1:75411251-75411270 | MS.gene052452:intron | 30.0% |
| ! | TAGTTGATGCAAGAGATTTA+TGG | - | chr6.1:75411250-75411269 | MS.gene052452:intron | 30.0% |
| ! | TATATGTTGCAAAATGGACT+TGG | - | chr6.1:75408537-75408556 | MS.gene052452:intron | 30.0% |
| ! | TCATATGTGCCATTAATGTT+TGG | - | chr6.1:75410466-75410485 | MS.gene052452:intron | 30.0% |
| !! | AAGCCTTATTAAAATCTGGA+AGG | - | chr6.1:75409955-75409974 | MS.gene052452:intron | 30.0% |
| !! | AGTGAAGCCTTATTAAAATC+TGG | - | chr6.1:75409951-75409970 | MS.gene052452:intron | 30.0% |
| !! | CATTAGTTTGCATTTATCGT+AGG | + | chr6.1:75411011-75411030 | None:intergenic | 30.0% |
| !! | CTAACATCTTTAACTTGTCA+GGG | + | chr6.1:75409381-75409400 | None:intergenic | 30.0% |
| !! | CTTAATCTTAGTGGACATTT+TGG | + | chr6.1:75408514-75408533 | None:intergenic | 30.0% |
| !! | TAACATCTTTAACTTGTCAG+GGG | + | chr6.1:75409380-75409399 | None:intergenic | 30.0% |
| !! | TGACCTTCCAGATTTTAATA+AGG | + | chr6.1:75409961-75409980 | None:intergenic | 30.0% |
| !!! | TTTTTTGAAACATAGGGGAA+AGG | - | chr6.1:75410073-75410092 | MS.gene052452:intron | 30.0% |
| AAATAGGCCCCTTTATTAGT+TGG | - | chr6.1:75410664-75410683 | MS.gene052452:intron | 35.0% | |
| AAATTCTATGGAGATAGGTG+TGG | - | chr6.1:75411118-75411137 | MS.gene052452:intron | 35.0% | |
| AATTCTATGGAGATAGGTGT+GGG | - | chr6.1:75411119-75411138 | MS.gene052452:intron | 35.0% | |
| ACTTGTAGTAAATGTATGCC+TGG | - | chr6.1:75409594-75409613 | MS.gene052452:intron | 35.0% | |
| ATGCCAAAACATTTGCTTCT+TGG | - | chr6.1:75409640-75409659 | MS.gene052452:intron | 35.0% | |
| CAATAATATTCAGCAACACG+AGG | + | chr6.1:75408440-75408459 | None:intergenic | 35.0% | |
| CACTAATAACAAAGTAGCAG+TGG | - | chr6.1:75411152-75411171 | MS.gene052452:intron | 35.0% | |
| CATGCATAACATTACTAGTG+AGG | + | chr6.1:75410399-75410418 | None:intergenic | 35.0% | |
| CATTGATATTGCAACCGAAA+TGG | + | chr6.1:75408774-75408793 | None:intergenic | 35.0% | |
| CCAAAAATGTGGGAAATAGT+TGG | - | chr6.1:75410114-75410133 | MS.gene052452:intron | 35.0% | |
| CCTGACAAGTTAAAGATGTT+AGG | - | chr6.1:75409379-75409398 | MS.gene052452:intron | 35.0% | |
| CTATTATAGAAGTCATGCTG+GGG | + | chr6.1:75410316-75410335 | None:intergenic | 35.0% | |
| GAAAGTTTAATCCGAGATAC+AGG | - | chr6.1:75408793-75408812 | MS.gene052452:intron | 35.0% | |
| GAAGTTATTGCAGTAAACCA+AGG | - | chr6.1:75410739-75410758 | MS.gene052452:intron | 35.0% | |
| GTAGATAAACTTGGAGTTCA+AGG | - | chr6.1:75410843-75410862 | MS.gene052452:intron | 35.0% | |
| TAATGCCCAAATGCTGAAAT+GGG | + | chr6.1:75410553-75410572 | None:intergenic | 35.0% | |
| TCAAGAAAGTCTACTTACCT+TGG | + | chr6.1:75410759-75410778 | None:intergenic | 35.0% | |
| TCTTCTTCTCTATGTGTGAA+TGG | - | chr6.1:75409982-75410001 | MS.gene052452:intron | 35.0% | |
| TGATGTTCAGATGGAATAGT+TGG | - | chr6.1:75408746-75408765 | MS.gene052452:intron | 35.0% | |
| TGCCAAAACATTTGCTTCTT+GGG | - | chr6.1:75409641-75409660 | MS.gene052452:intron | 35.0% | |
| TGGAATAGTTGGAACCATTT+CGG | - | chr6.1:75408757-75408776 | MS.gene052452:intron | 35.0% | |
| TTCAACTCAAAACATGGATC+TGG | - | chr6.1:75410980-75410999 | MS.gene052452:intron | 35.0% | |
| ! | CCAACTATTTCCCACATTTT+TGG | + | chr6.1:75410117-75410136 | None:intergenic | 35.0% |
| ! | TACCCAAGAAGCAAATGTTT+TGG | + | chr6.1:75409646-75409665 | None:intergenic | 35.0% |
| !! | CCTAACATCTTTAACTTGTC+AGG | + | chr6.1:75409382-75409401 | None:intergenic | 35.0% |
| !! | CTCAACACTATCATTGGTTT+CGG | - | chr6.1:75411366-75411385 | MS.gene052452:CDS | 35.0% |
| !! | GCTACTTTGTTATTAGTGAG+AGG | + | chr6.1:75411150-75411169 | None:intergenic | 35.0% |
| !! | TCAACACTATCATTGGTTTC+GGG | - | chr6.1:75411367-75411386 | MS.gene052452:CDS | 35.0% |
| !! | TTTTTCAGATGATTGTTGGG+CGG | - | chr6.1:75409188-75409207 | MS.gene052452:intron | 35.0% |
| AAAGGAAGATCCAGCAACAT+GGG | - | chr6.1:75410091-75410110 | MS.gene052452:intron | 40.0% | |
| AAATGTATGCCTGGATCACT+GGG | - | chr6.1:75409603-75409622 | MS.gene052452:intron | 40.0% | |
| AATAAGGCTTCACTCATTGG+TGG | + | chr6.1:75409945-75409964 | None:intergenic | 40.0% | |
| ATGCAACAGTAACTGCATCT+TGG | - | chr6.1:75411199-75411218 | MS.gene052452:intron | 40.0% | |
| CACATGAAAGGCTTGAAGTT+GGG | - | chr6.1:75409464-75409483 | MS.gene052452:intron | 40.0% | |
| CTAATGCCCAAATGCTGAAA+TGG | + | chr6.1:75410554-75410573 | None:intergenic | 40.0% | |
| GATATGCTCGAAGTTGGAAA+TGG | - | chr6.1:75410501-75410520 | MS.gene052452:intron | 40.0% | |
| GGAAATAGTTGGAGAACAAC+AGG | - | chr6.1:75410125-75410144 | MS.gene052452:intron | 40.0% | |
| TAAATGTATGCCTGGATCAC+TGG | - | chr6.1:75409602-75409621 | MS.gene052452:intron | 40.0% | |
| TAATTACCATTCCATCCTCC+AGG | + | chr6.1:75410371-75410390 | None:intergenic | 40.0% | |
| TATCATTTCAGCTGATGCGA+TGG | - | chr6.1:75408910-75408929 | MS.gene052452:intron | 40.0% | |
| TCACATGAAAGGCTTGAAGT+TGG | - | chr6.1:75409463-75409482 | MS.gene052452:intron | 40.0% | |
| TGATGCAAGAGATTTATGGG+AGG | - | chr6.1:75411254-75411273 | MS.gene052452:intron | 40.0% | |
| TGGGAATCTATTCAGATGCT+GGG | - | chr6.1:75409483-75409502 | MS.gene052452:CDS | 40.0% | |
| TTAGGGAAATATGGTTCCCA+AGG | - | chr6.1:75409397-75409416 | MS.gene052452:intron | 40.0% | |
| TTGGGAATCTATTCAGATGC+TGG | - | chr6.1:75409482-75409501 | MS.gene052452:CDS | 40.0% | |
| TTTCCAACTTCGAGCATATC+AGG | + | chr6.1:75410501-75410520 | None:intergenic | 40.0% | |
| ! | ACAAAGTAGCAGTGGTCTTA+TGG | - | chr6.1:75411160-75411179 | MS.gene052452:intron | 40.0% |
| ! | GTGTGAATGGTGAGTTGAAT+TGG | - | chr6.1:75409995-75410014 | MS.gene052452:intron | 40.0% |
| !! | AACACTATCATTGGTTTCGG+GGG | - | chr6.1:75411369-75411388 | MS.gene052452:CDS | 40.0% |
| !! | CAACACTATCATTGGTTTCG+GGG | - | chr6.1:75411368-75411387 | MS.gene052452:CDS | 40.0% |
| AAGGCTTCAACGTTTCCTTC+AGG | - | chr6.1:75409416-75409435 | MS.gene052452:intron | 45.0% | |
| ACTGCATCTTGGTCAGACAT+AGG | - | chr6.1:75411210-75411229 | MS.gene052452:intron | 45.0% | |
| AGATGGTATAGCATACCCCA+TGG | + | chr6.1:75408574-75408593 | None:intergenic | 45.0% | |
| AGCAACATGGGCCAAAAATG+TGG | - | chr6.1:75410103-75410122 | MS.gene052452:intron | 45.0% | |
| ATCGTGCCCATTTCAGCATT+TGG | - | chr6.1:75410544-75410563 | MS.gene052452:intron | 45.0% | |
| ATGCTCGAAGTTGGAAATGG+AGG | - | chr6.1:75410504-75410523 | MS.gene052452:intron | 45.0% | |
| ATGGTATAGCATACCCCATG+GGG | + | chr6.1:75408572-75408591 | None:intergenic | 45.0% | |
| ATTTCATGTCCCAGTGATCC+AGG | + | chr6.1:75409615-75409634 | None:intergenic | 45.0% | |
| CAGCATTTGGGCATTAGCTA+AGG | - | chr6.1:75410557-75410576 | MS.gene052452:intron | 45.0% | |
| GAAAGGAAGATCCAGCAACA+TGG | - | chr6.1:75410090-75410109 | MS.gene052452:intron | 45.0% | |
| GAAGGAAACGTTGAAGCCTT+GGG | + | chr6.1:75409416-75409435 | None:intergenic | 45.0% | |
| GACAAATGGGCATCTTATGC+TGG | - | chr6.1:75410344-75410363 | MS.gene052452:intron | 45.0% | |
| GATCCTGATATGCTCGAAGT+TGG | - | chr6.1:75410495-75410514 | MS.gene052452:intron | 45.0% | |
| GATGGTATAGCATACCCCAT+GGG | + | chr6.1:75408573-75408592 | None:intergenic | 45.0% | |
| GCAACATGGGCCAAAAATGT+GGG | - | chr6.1:75410104-75410123 | MS.gene052452:intron | 45.0% | |
| GCAGCACTCAACACTATCAT+TGG | - | chr6.1:75411360-75411379 | MS.gene052452:CDS | 45.0% | |
| GCTAGAAGCTTGATTCCTGA+AGG | + | chr6.1:75409434-75409453 | None:intergenic | 45.0% | |
| GGAACTTAATCGAGACTCAC+AGG | - | chr6.1:75409209-75409228 | MS.gene052452:intron | 45.0% | |
| GGGAGGTAAGAGAGTTAGTT+AGG | - | chr6.1:75411271-75411290 | MS.gene052452:intron | 45.0% | |
| TCGTGCCCATTTCAGCATTT+GGG | - | chr6.1:75410545-75410564 | MS.gene052452:intron | 45.0% | |
| TGAAACTCACACGCTTCTTG+TGG | - | chr6.1:75410816-75410835 | MS.gene052452:intron | 45.0% | |
| TGAAGGAAACGTTGAAGCCT+TGG | + | chr6.1:75409417-75409436 | None:intergenic | 45.0% | |
| ! | AAATGGAGGCATGACAACAG+AGG | - | chr6.1:75410518-75410537 | MS.gene052452:intron | 45.0% |
| !!! | ACATTTTTGGCCCATGTTGC+TGG | + | chr6.1:75410104-75410123 | None:intergenic | 45.0% |
| AAGCGAGCAGCTGAAGATGA+TGG | + | chr6.1:75408471-75408490 | None:intergenic | 50.0% | |
| TGGTATAGCATACCCCATGG+GGG | + | chr6.1:75408571-75408590 | None:intergenic | 50.0% | |
| ACTTGTACCCTAGGGCAGCA+AGG | + | chr6.1:75408946-75408965 | None:intergenic | 55.0% | |
| CTATGGAGATAGGTGTGGGC+AGG | - | chr6.1:75411123-75411142 | MS.gene052452:intron | 55.0% | |
| CTTATGCTGGACCTGGAGGA+TGG | - | chr6.1:75410357-75410376 | MS.gene052452:CDS | 55.0% | |
| GCATCTTATGCTGGACCTGG+AGG | - | chr6.1:75410353-75410372 | MS.gene052452:intron | 55.0% | |
| GGTATAGCATACCCCATGGG+GGG | + | chr6.1:75408570-75408589 | None:intergenic | 55.0% | |
| TGGGCATCTTATGCTGGACC+TGG | - | chr6.1:75410350-75410369 | MS.gene052452:intron | 55.0% | |
| ! | GCTGATGCGATGGTGTCAAC+TGG | - | chr6.1:75408920-75408939 | MS.gene052452:intron | 55.0% |
| ACTTGGTCAGACACCCCCCA+TGG | - | chr6.1:75408554-75408573 | MS.gene052452:intron | 60.0% | |
| CTTGGTCAGACACCCCCCAT+GGG | - | chr6.1:75408555-75408574 | MS.gene052452:intron | 60.0% | |
| GCTGGACCTGGAGGATGGAA+TGG | - | chr6.1:75410362-75410381 | MS.gene052452:CDS | 60.0% | |
| TTGGTCAGACACCCCCCATG+GGG | - | chr6.1:75408556-75408575 | MS.gene052452:intron | 60.0% | |
| !! | CAACTGGCCTTGCTGCCCTA+GGG | - | chr6.1:75408936-75408955 | MS.gene052452:intron | 60.0% |
| !! | TCAACTGGCCTTGCTGCCCT+AGG | - | chr6.1:75408935-75408954 | MS.gene052452:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 75408405 | 75411456 | 75408405 | ID=MS.gene052452 |
| chr6.1 | mRNA | 75408405 | 75411456 | 75408405 | ID=MS.gene052452.t1;Parent=MS.gene052452 |
| chr6.1 | exon | 75411284 | 75411456 | 75411284 | ID=MS.gene052452.t1.exon1;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75411284 | 75411456 | 75411284 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75411047 | 75411105 | 75411047 | ID=MS.gene052452.t1.exon2;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75411047 | 75411105 | 75411047 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75410884 | 75410940 | 75410884 | ID=MS.gene052452.t1.exon3;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75410884 | 75410940 | 75410884 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75410631 | 75410665 | 75410631 | ID=MS.gene052452.t1.exon4;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75410631 | 75410665 | 75410631 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75410357 | 75410460 | 75410357 | ID=MS.gene052452.t1.exon5;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75410357 | 75410460 | 75410357 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75410199 | 75410274 | 75410199 | ID=MS.gene052452.t1.exon6;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75410199 | 75410274 | 75410199 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75410029 | 75410087 | 75410029 | ID=MS.gene052452.t1.exon7;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75410029 | 75410087 | 75410029 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75409858 | 75409923 | 75409858 | ID=MS.gene052452.t1.exon8;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75409858 | 75409923 | 75409858 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75409690 | 75409773 | 75409690 | ID=MS.gene052452.t1.exon9;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75409690 | 75409773 | 75409690 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75409478 | 75409542 | 75409478 | ID=MS.gene052452.t1.exon10;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75409478 | 75409542 | 75409478 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75409283 | 75409365 | 75409283 | ID=MS.gene052452.t1.exon11;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75409283 | 75409365 | 75409283 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75409101 | 75409191 | 75409101 | ID=MS.gene052452.t1.exon12;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75409101 | 75409191 | 75409101 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75408965 | 75409014 | 75408965 | ID=MS.gene052452.t1.exon13;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75408965 | 75409014 | 75408965 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75408586 | 75408726 | 75408586 | ID=MS.gene052452.t1.exon14;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75408586 | 75408726 | 75408586 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| chr6.1 | exon | 75408405 | 75408497 | 75408405 | ID=MS.gene052452.t1.exon15;Parent=MS.gene052452.t1 |
| chr6.1 | CDS | 75408405 | 75408497 | 75408405 | ID=cds.MS.gene052452.t1;Parent=MS.gene052452.t1 |
| Gene Sequence |
| Protein sequence |
