Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052453.t1 | KEH27106.1 | 96.8 | 408 | 12 | 1 | 1 | 407 | 1 | 408 | 4.90E-228 | 800 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052453.t1 | P14749 | 79.9 | 368 | 74 | 0 | 38 | 405 | 43 | 410 | 6.4e-176 | 618.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052453.t1 | A0A072UCB8 | 96.8 | 408 | 12 | 1 | 1 | 407 | 1 | 408 | 3.6e-228 | 800.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene27500 | MS.gene052453 | PPI |
MS.gene036942 | MS.gene052453 | PPI |
MS.gene049391 | MS.gene052453 | PPI |
MS.gene27501 | MS.gene052453 | PPI |
MS.gene052453 | MS.gene92764 | PPI |
MS.gene87684 | MS.gene052453 | PPI |
MS.gene059347 | MS.gene052453 | PPI |
MS.gene87685 | MS.gene052453 | PPI |
MS.gene92763 | MS.gene052453 | PPI |
MS.gene013419 | MS.gene052453 | PPI |
MS.gene06516 | MS.gene052453 | PPI |
MS.gene036941 | MS.gene052453 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052453.t1 | MTR_6g086625 | 96.814 | 408 | 12 | 1 | 1 | 407 | 1 | 408 | 0.0 | 816 |
MS.gene052453.t1 | MTR_6g086575 | 93.120 | 407 | 28 | 0 | 1 | 407 | 1 | 407 | 0.0 | 788 |
MS.gene052453.t1 | MTR_1g077480 | 90.097 | 414 | 34 | 1 | 1 | 407 | 1 | 414 | 0.0 | 772 |
MS.gene052453.t1 | MTR_1g077520 | 80.988 | 405 | 73 | 2 | 3 | 404 | 4 | 407 | 0.0 | 696 |
MS.gene052453.t1 | MTR_6g069140 | 77.778 | 387 | 80 | 1 | 24 | 404 | 33 | 419 | 0.0 | 636 |
MS.gene052453.t1 | MTR_1g077520 | 81.325 | 332 | 58 | 2 | 3 | 331 | 4 | 334 | 0.0 | 575 |
MS.gene052453.t1 | MTR_7g073640 | 60.599 | 401 | 153 | 4 | 7 | 404 | 9 | 407 | 0.0 | 509 |
MS.gene052453.t1 | MTR_7g073650 | 62.992 | 381 | 138 | 3 | 27 | 404 | 26 | 406 | 0.0 | 509 |
MS.gene052453.t1 | MTR_3g094160 | 63.342 | 371 | 131 | 3 | 41 | 407 | 59 | 428 | 2.69e-178 | 504 |
MS.gene052453.t1 | MTR_1g078410 | 62.911 | 213 | 20 | 3 | 1 | 206 | 1 | 161 | 1.53e-81 | 248 |
MS.gene052453.t1 | MTR_0279s0030 | 51.220 | 123 | 58 | 2 | 284 | 404 | 101 | 223 | 3.27e-36 | 132 |
MS.gene052453.t1 | MTR_0279s0030 | 51.220 | 123 | 58 | 2 | 284 | 404 | 185 | 307 | 4.31e-35 | 132 |
MS.gene052453.t1 | MTR_0279s0030 | 51.220 | 123 | 58 | 2 | 284 | 404 | 250 | 372 | 1.61e-34 | 132 |
MS.gene052453.t1 | MTR_8g089725 | 25.243 | 515 | 256 | 21 | 7 | 405 | 4 | 505 | 1.19e-24 | 105 |
MS.gene052453.t1 | MTR_8g089735 | 25.049 | 515 | 257 | 21 | 7 | 405 | 4 | 505 | 7.12e-24 | 103 |
MS.gene052453.t1 | MTR_3g086580 | 25.505 | 396 | 195 | 13 | 8 | 312 | 3 | 389 | 3.57e-22 | 99.4 |
MS.gene052453.t1 | MTR_8g089745 | 25.063 | 395 | 199 | 14 | 4 | 313 | 1 | 383 | 8.47e-22 | 97.4 |
MS.gene052453.t1 | MTR_8g089745 | 25.063 | 395 | 199 | 14 | 4 | 313 | 1 | 383 | 2.05e-21 | 97.1 |
MS.gene052453.t1 | MTR_2g096530 | 27.221 | 349 | 164 | 12 | 51 | 312 | 40 | 385 | 3.94e-21 | 95.9 |
MS.gene052453.t1 | MTR_8g089740 | 25.897 | 390 | 191 | 15 | 10 | 313 | 2 | 379 | 4.91e-21 | 95.9 |
MS.gene052453.t1 | MTR_3g094180 | 50.000 | 72 | 33 | 1 | 317 | 385 | 7 | 78 | 3.20e-14 | 68.6 |
MS.gene052453.t1 | MTR_3g086580 | 29.609 | 179 | 97 | 6 | 161 | 312 | 26 | 202 | 6.02e-13 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052453.t1 | AT5G08370 | 68.564 | 404 | 112 | 2 | 4 | 407 | 8 | 396 | 0.0 | 587 |
MS.gene052453.t1 | AT5G08370 | 72.162 | 370 | 103 | 0 | 38 | 407 | 1 | 370 | 0.0 | 584 |
MS.gene052453.t1 | AT5G08380 | 59.360 | 406 | 160 | 3 | 3 | 404 | 4 | 408 | 0.0 | 510 |
MS.gene052453.t1 | AT3G56310 | 63.686 | 369 | 129 | 4 | 41 | 405 | 63 | 430 | 3.79e-176 | 498 |
MS.gene052453.t1 | AT3G56310 | 59.621 | 369 | 120 | 5 | 41 | 405 | 63 | 406 | 1.16e-157 | 451 |
MS.gene052453.t1 | AT5G08380 | 61.342 | 313 | 119 | 1 | 3 | 313 | 4 | 316 | 5.21e-145 | 415 |
MS.gene052453.t1 | AT3G26380 | 25.788 | 349 | 169 | 12 | 51 | 312 | 42 | 387 | 2.83e-21 | 95.9 |
MS.gene052453.t1 | AT3G26380 | 25.788 | 349 | 169 | 12 | 51 | 312 | 42 | 387 | 6.20e-21 | 95.5 |
Find 103 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACATAAAACTCTTAATTT+TGG | 0.177963 | 6.1:+75426793 | None:intergenic |
TCTTCAGCTGCTCGATTATT+AGG | 0.239998 | 6.1:-75426830 | MS.gene052453:CDS |
TAGTTGATGCAAGAGATTTA+TGG | 0.248040 | 6.1:-75424098 | MS.gene052453:CDS |
TTAAATATGTTAGGGAAATA+TGG | 0.249332 | 6.1:-75425944 | MS.gene052453:intron |
CAGGAGATATTGAAGATAAT+TGG | 0.256846 | 6.1:-75425195 | MS.gene052453:CDS |
ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 6.1:-75425691 | MS.gene052453:CDS |
TGGAATAGTTGGAACCATTT+TGG | 0.262795 | 6.1:-75426573 | MS.gene052453:CDS |
ACAAAGTAGCAGTGGTCTTA+TGG | 0.274504 | 6.1:-75424188 | MS.gene052453:CDS |
ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 6.1:-75424802 | MS.gene052453:CDS |
TGCCAAAACATTTGCTTCTT+GGG | 0.290074 | 6.1:-75425690 | MS.gene052453:intron |
CCAACTATTTCCAACACTTT+TGG | 0.291358 | 6.1:+75425225 | None:intergenic |
CATTTATATCACAACCAAAA+TGG | 0.295557 | 6.1:+75426559 | None:intergenic |
GGGTACAAGTATATCAATTT+AGG | 0.295779 | 6.1:-75426374 | MS.gene052453:intron |
TTTCCAACTTCGAGCATATC+AGG | 0.305679 | 6.1:+75424848 | None:intergenic |
TGCAGATAAACTTGGAGTTC+AGG | 0.311238 | 6.1:-75424505 | MS.gene052453:intron |
AGTTGATGCAAGAGATTTAT+GGG | 0.323036 | 6.1:-75424097 | MS.gene052453:CDS |
ATATTACAACCAACTAATAA+AGG | 0.326535 | 6.1:+75424674 | None:intergenic |
TGTATATTCTCACACCTAAA+AGG | 0.330875 | 6.1:-75423922 | MS.gene052453:CDS |
CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 6.1:+75424795 | None:intergenic |
GAGTGAAGCCCTATTAAAAT+CGG | 0.355906 | 6.1:-75425389 | MS.gene052453:CDS |
CAAAAGCAACAATGATTTAG+AGG | 0.357578 | 6.1:-75424472 | MS.gene052453:intron |
TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 6.1:-75424801 | MS.gene052453:CDS |
TACCCAAGAAGCAAATGTTT+TGG | 0.362595 | 6.1:+75425688 | None:intergenic |
TATGATAATTGTGAAAATAA+TGG | 0.367657 | 6.1:-75425541 | MS.gene052453:CDS |
TAATAGATGTAAACGACAAA+TGG | 0.370517 | 6.1:-75425018 | MS.gene052453:CDS |
TATTACAACCAACTAATAAA+GGG | 0.382437 | 6.1:+75424675 | None:intergenic |
TTTAATAGGGCTTCACTCAT+TGG | 0.397610 | 6.1:+75425394 | None:intergenic |
TGTGAGAATATACATCTTGC+AGG | 0.399454 | 6.1:+75423931 | None:intergenic |
GCAGCACTCAACACAATCAT+TGG | 0.401559 | 6.1:-75423990 | MS.gene052453:intron |
TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 6.1:+75425918 | None:intergenic |
GCAGATAAACTTGGAGTTCA+GGG | 0.405966 | 6.1:-75424504 | MS.gene052453:intron |
AACGTTTCCTTCAGGAATCA+AGG | 0.411562 | 6.1:-75425908 | MS.gene052453:CDS |
ACTGCATCCTGGTCAGATAT+AGG | 0.412586 | 6.1:-75424138 | MS.gene052453:CDS |
AAATAGGCCCCTTTATTAGT+TGG | 0.414998 | 6.1:-75424683 | MS.gene052453:intron |
TGATGTTCAGATGGAATAGT+TGG | 0.418115 | 6.1:-75426584 | MS.gene052453:intron |
CACAGGAAAGGCTTGAAGTT+GGG | 0.422305 | 6.1:-75425868 | MS.gene052453:CDS |
GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 6.1:-75426537 | MS.gene052453:intron |
GGAAATAGTTGGAGAACAAC+AGG | 0.431528 | 6.1:-75425214 | MS.gene052453:CDS |
GCTGATGCGATGGTGTCAAC+TGG | 0.433263 | 6.1:-75426410 | MS.gene052453:CDS |
TCAACTGGACTTGCTGCCCT+AGG | 0.444646 | 6.1:-75426395 | MS.gene052453:CDS |
ACCATTCCACCCTCCAGGTC+CGG | 0.451609 | 6.1:+75424985 | None:intergenic |
TAGAGCAATGGCTAGATTGA+TGG | 0.453710 | 6.1:-75426906 | None:intergenic |
GATATGCTCGAAGTTGGAAA+TGG | 0.467367 | 6.1:-75424845 | MS.gene052453:CDS |
ATTTCATGTCCTAGTGATCC+AGG | 0.469966 | 6.1:+75425719 | None:intergenic |
TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 6.1:+75424796 | None:intergenic |
CATCTTATGCCGGACCTGGA+GGG | 0.477735 | 6.1:-75424994 | MS.gene052453:CDS |
TGTGGTATTGCAGATAAACT+TGG | 0.480571 | 6.1:-75424513 | MS.gene052453:intron |
AATAGATGTAAACGACAAAT+GGG | 0.481120 | 6.1:-75425017 | MS.gene052453:CDS |
TTGGGAATTTATTCAGATGC+CGG | 0.482913 | 6.1:-75425850 | MS.gene052453:CDS |
CAGCATTTGGGCATTAGCTA+AGG | 0.486215 | 6.1:-75424789 | MS.gene052453:intron |
CCAAAAGTGTTGGAAATAGT+TGG | 0.487306 | 6.1:-75425225 | MS.gene052453:CDS |
TGGGCATCTTATGCCGGACC+TGG | 0.489124 | 6.1:-75424998 | MS.gene052453:CDS |
AATTGATATACTTGTACCCT+AGG | 0.490789 | 6.1:+75426378 | None:intergenic |
TCTTCTTCTCTATGTGTGAA+TGG | 0.493915 | 6.1:-75425357 | MS.gene052453:intron |
GACAAATGGGCATCTTATGC+CGG | 0.494595 | 6.1:-75425004 | MS.gene052453:CDS |
AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 6.1:-75425916 | MS.gene052453:CDS |
ACTTGTAGTAAACGTATGCC+TGG | 0.499229 | 6.1:-75425737 | MS.gene052453:CDS |
GATCCTGATATGCTCGAAGT+TGG | 0.500070 | 6.1:-75424851 | MS.gene052453:CDS |
CTCTAGCTCATTATATTCAC+AGG | 0.500877 | 6.1:-75425885 | MS.gene052453:CDS |
TCACAGGAAAGGCTTGAAGT+TGG | 0.502672 | 6.1:-75425869 | MS.gene052453:CDS |
TTTATGTTGCAAAATGGACT+TGG | 0.502706 | 6.1:-75426779 | MS.gene052453:CDS |
GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 6.1:+75425919 | None:intergenic |
ATATTGAAGATAATTGGAAT+AGG | 0.514399 | 6.1:-75425189 | MS.gene052453:intron |
TCAGATATAGGTCTGAAATC+AGG | 0.516980 | 6.1:-75424126 | MS.gene052453:CDS |
TAATTACCATTCCACCCTCC+AGG | 0.519173 | 6.1:+75424980 | None:intergenic |
ATGGTATAAGCGTTAGAGAA+AGG | 0.522615 | 6.1:-75425522 | MS.gene052453:intron |
GCTACTTTGTTATTATTGAG+AGG | 0.523143 | 6.1:+75424201 | None:intergenic |
CAACTGGACTTGCTGCCCTA+GGG | 0.527150 | 6.1:-75426394 | MS.gene052453:CDS |
AATAGGGCTTCACTCATTGG+TGG | 0.529350 | 6.1:+75425397 | None:intergenic |
TGGGAATTTATTCAGATGCC+GGG | 0.530152 | 6.1:-75425849 | MS.gene052453:intron |
AGTGAAGCCCTATTAAAATC+GGG | 0.533552 | 6.1:-75425388 | MS.gene052453:CDS |
GCCGGACCTGGAGGGTGGAA+TGG | 0.535764 | 6.1:-75424986 | MS.gene052453:intron |
GCAACATGGGCCAAAAGTGT+TGG | 0.545524 | 6.1:-75425235 | MS.gene052453:CDS |
CTATGGATATAGGTTTGGGC+AGG | 0.545776 | 6.1:-75424225 | MS.gene052453:intron |
ATGGGAAGATCCAGCAACAT+GGG | 0.549059 | 6.1:-75425248 | MS.gene052453:CDS |
TGGTTGTAATATTCAAGCAA+TGG | 0.558395 | 6.1:-75424663 | MS.gene052453:CDS |
ATGCAACAGTAACTGCATCC+TGG | 0.558672 | 6.1:-75424149 | MS.gene052453:CDS |
AAACGTATGCCTGGATCACT+AGG | 0.565228 | 6.1:-75425728 | MS.gene052453:CDS |
GCTCATTATATTCACAGGAA+AGG | 0.565444 | 6.1:-75425880 | MS.gene052453:CDS |
AAACATATATACCTGTATCT+CGG | 0.565473 | 6.1:+75426526 | None:intergenic |
TATCATTTCAGCTGATGCGA+TGG | 0.569529 | 6.1:-75426420 | MS.gene052453:intron |
GATGGGAAGATCCAGCAACA+TGG | 0.570848 | 6.1:-75425249 | MS.gene052453:CDS |
TTAGGGAAATATGGTTCCCA+AGG | 0.571959 | 6.1:-75425935 | MS.gene052453:intron |
AGAACTTAATCGAGACTCAC+AGG | 0.572244 | 6.1:-75426118 | MS.gene052453:intron |
ACTTGGTCAGACACCTCCCA+TGG | 0.576039 | 6.1:-75426762 | MS.gene052453:CDS |
GCATCTTATGCCGGACCTGG+AGG | 0.581193 | 6.1:-75424995 | MS.gene052453:CDS |
CTTGGTCAGACACCTCCCAT+GGG | 0.589037 | 6.1:-75426761 | MS.gene052453:CDS |
ATGCTCGAAGTTGGAAATGG+AGG | 0.603679 | 6.1:-75424842 | MS.gene052453:CDS |
CAATAATAACAAAGTAGCAG+TGG | 0.606485 | 6.1:-75424196 | MS.gene052453:CDS |
ATTACAACCAACTAATAAAG+GGG | 0.610550 | 6.1:+75424676 | None:intergenic |
CTTATGCCGGACCTGGAGGG+TGG | 0.613128 | 6.1:-75424991 | MS.gene052453:CDS |
AATCGAGCAGCTGAAGATGA+CGG | 0.617892 | 6.1:+75426836 | None:intergenic |
GCTAGAGCCTTGATTCCTGA+AGG | 0.622037 | 6.1:+75425901 | None:intergenic |
TTTCAGACCTATATCTGACC+AGG | 0.624392 | 6.1:+75424131 | None:intergenic |
CAATAATATTCAACAACACG+AGG | 0.627185 | 6.1:+75426867 | None:intergenic |
GAAGTTATTGCAGTAAACCA+AGG | 0.635887 | 6.1:-75424608 | MS.gene052453:intron |
ATTGATATACTTGTACCCTA+GGG | 0.641607 | 6.1:+75426379 | None:intergenic |
GAGGGTATAGCATACCCCAT+GGG | 0.653031 | 6.1:+75426746 | None:intergenic |
AAGCCCTATTAAAATCGGGA+AGG | 0.657228 | 6.1:-75425384 | MS.gene052453:CDS |
AAATGGAGGCATGACAACAG+AGG | 0.691145 | 6.1:-75424828 | MS.gene052453:CDS |
GGTATAGCATACCCCATGGG+AGG | 0.697835 | 6.1:+75426749 | None:intergenic |
TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 6.1:-75424094 | MS.gene052453:intron |
TTGGTCAGACACCTCCCATG+GGG | 0.730500 | 6.1:-75426760 | MS.gene052453:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAACAATTTAAATTCATA+TGG | - | chr6.1:75426778-75426797 | MS.gene052453:CDS | 10.0% |
!!! | GTCTATTTTTAAAAAAATAT+AGG | - | chr6.1:75424792-75424811 | MS.gene052453:CDS | 10.0% |
!! | AAAATAAACATACAAATCAA+TGG | + | chr6.1:75424754-75424773 | None:intergenic | 15.0% |
!! | GATTATCATAAAAGAAAAAA+TGG | + | chr6.1:75424140-75424159 | None:intergenic | 15.0% |
!! | TATACTTTCATGTATTTAAT+TGG | + | chr6.1:75424187-75424206 | None:intergenic | 15.0% |
!! | TATGATAATTGTGAAAATAA+TGG | - | chr6.1:75425274-75425293 | MS.gene052453:intron | 15.0% |
!! | TCAAATAATGTATGTATATA+TGG | + | chr6.1:75425155-75425174 | None:intergenic | 15.0% |
!! | TTATTATATTTCCCTTTATA+TGG | - | chr6.1:75426371-75426390 | MS.gene052453:intron | 15.0% |
!!! | AATTTCTTTTTTGAAACATA+GGG | - | chr6.1:75425543-75425562 | MS.gene052453:CDS | 15.0% |
!!! | TAATTTCTTTTTTGAAACAT+AGG | - | chr6.1:75425542-75425561 | MS.gene052453:CDS | 15.0% |
!! | AAACTTAAACACCATATAAA+GGG | + | chr6.1:75426385-75426404 | None:intergenic | 20.0% |
!! | AAAGTAATATGTCTTGAATT+CGG | - | chr6.1:75426085-75426104 | MS.gene052453:intron | 20.0% |
!! | AACTGTAAAAATAATAGCTT+AGG | + | chr6.1:75424336-75424355 | None:intergenic | 20.0% |
!! | ACACAAATGATTTGATTATA+AGG | + | chr6.1:75426502-75426521 | None:intergenic | 20.0% |
!! | ACTAAAAATTCTATGGATAT+AGG | - | chr6.1:75426580-75426599 | MS.gene052453:intron | 20.0% |
!! | ACTGTAAAAATAATAGCTTA+GGG | + | chr6.1:75424335-75424354 | None:intergenic | 20.0% |
!! | ACTTCTTACTAAAAATTCTA+TGG | - | chr6.1:75426573-75426592 | MS.gene052453:CDS | 20.0% |
!! | ATATTACAACCAACTAATAA+AGG | + | chr6.1:75426144-75426163 | None:intergenic | 20.0% |
!! | ATATTGAAGATAATTGGAAT+AGG | - | chr6.1:75425626-75425645 | MS.gene052453:intron | 20.0% |
!! | ATTTGAATTTGAATGAACAA+TGG | + | chr6.1:75424113-75424132 | None:intergenic | 20.0% |
!! | TATTACAACCAACTAATAAA+GGG | + | chr6.1:75426143-75426162 | None:intergenic | 20.0% |
!! | TTAAATATGTTAGGGAAATA+TGG | - | chr6.1:75424871-75424890 | MS.gene052453:intron | 20.0% |
!!! | ATTGGTTCAAATTTTTCTTT+AGG | - | chr6.1:75425234-75425253 | MS.gene052453:CDS | 20.0% |
!!! | ATTTCTTTTTTGAAACATAG+GGG | - | chr6.1:75425544-75425563 | MS.gene052453:CDS | 20.0% |
!!! | CAACATAAAACTCTTAATTT+TGG | + | chr6.1:75424025-75424044 | None:intergenic | 20.0% |
!!! | GGTTTTTTAACTATTTTACT+CGG | - | chr6.1:75426106-75426125 | MS.gene052453:intron | 20.0% |
!!! | TATTTTCTTCAAATGCAAAT+AGG | - | chr6.1:75425325-75425344 | MS.gene052453:intron | 20.0% |
!!! | TTAAATTCATATGGTTTTGA+TGG | - | chr6.1:75426787-75426806 | MS.gene052453:CDS | 20.0% |
!!! | TTGGTTCAAATTTTTCTTTA+GGG | - | chr6.1:75425235-75425254 | MS.gene052453:CDS | 20.0% |
! | AAACATATATACCTGTATCT+CGG | + | chr6.1:75424292-75424311 | None:intergenic | 25.0% |
! | AAATTCTATGGATATAGGTT+TGG | - | chr6.1:75426585-75426604 | MS.gene052453:intron | 25.0% |
! | AAATTTAATATGTCGATACC+CGG | + | chr6.1:75424987-75425006 | None:intergenic | 25.0% |
! | AATAGATGTAAACGACAAAT+GGG | - | chr6.1:75425798-75425817 | MS.gene052453:intron | 25.0% |
! | AATTCTATGGATATAGGTTT+GGG | - | chr6.1:75426586-75426605 | MS.gene052453:intron | 25.0% |
! | ACAAGTATATCAATTTAGGT+AGG | - | chr6.1:75424445-75424464 | MS.gene052453:intron | 25.0% |
! | AGAAAAATTTGAACCAATAC+TGG | + | chr6.1:75425232-75425251 | None:intergenic | 25.0% |
! | ATGAGAATGACAAATAAAGA+GGG | + | chr6.1:75424090-75424109 | None:intergenic | 25.0% |
! | ATTACAACCAACTAATAAAG+GGG | + | chr6.1:75426142-75426161 | None:intergenic | 25.0% |
! | CAAACTTAAACACCATATAA+AGG | + | chr6.1:75426386-75426405 | None:intergenic | 25.0% |
! | CATACGAGGAATTAATATAT+TGG | + | chr6.1:75425922-75425941 | None:intergenic | 25.0% |
! | CATTTATATCACAACCAAAA+TGG | + | chr6.1:75424259-75424278 | None:intergenic | 25.0% |
! | CTGACAAGTTAAATATGTTA+GGG | - | chr6.1:75424863-75424882 | MS.gene052453:intron | 25.0% |
! | GATTCATAAAATTACTAGTG+AGG | + | chr6.1:75425866-75425885 | None:intergenic | 25.0% |
! | TAATAGATGTAAACGACAAA+TGG | - | chr6.1:75425797-75425816 | MS.gene052453:intron | 25.0% |
! | TAGTATCATTATAAGTTGTG+AGG | + | chr6.1:75426412-75426431 | None:intergenic | 25.0% |
! | TATTACTTTGTCTCAACAAT+AGG | + | chr6.1:75426074-75426093 | None:intergenic | 25.0% |
! | TCTGACAAGTTAAATATGTT+AGG | - | chr6.1:75424862-75424881 | MS.gene052453:intron | 25.0% |
! | TTAACTCTCAAATCAATACA+TGG | - | chr6.1:75426439-75426458 | MS.gene052453:intron | 25.0% |
! | TTATATTCATGATGTTCAGA+TGG | - | chr6.1:75424222-75424241 | MS.gene052453:intron | 25.0% |
!! | CTATTTTACTCGGTTTAAAT+AGG | - | chr6.1:75426116-75426135 | MS.gene052453:intron | 25.0% |
!!! | AAGAGTTTTATGTTGCAAAA+TGG | - | chr6.1:75424030-75424049 | MS.gene052453:intron | 25.0% |
!!! | TAACATATTTAACTTGTCAG+AGG | + | chr6.1:75424863-75424882 | None:intergenic | 25.0% |
!!! | TTTTTTTCCAGATGATTGTT+GGG | - | chr6.1:75424673-75424692 | MS.gene052453:CDS | 25.0% |
!!! | TTTTTTTTCCAGATGATTGT+TGG | - | chr6.1:75424672-75424691 | MS.gene052453:CDS | 25.0% |
AAACATTAATGACACATACG+AGG | + | chr6.1:75425936-75425955 | None:intergenic | 30.0% | |
AATTGATATACTTGTACCCT+AGG | + | chr6.1:75424440-75424459 | None:intergenic | 30.0% | |
AGTATATCAATTTAGGTAGG+TGG | - | chr6.1:75424448-75424467 | MS.gene052453:intron | 30.0% | |
ATTGATATACTTGTACCCTA+GGG | + | chr6.1:75424439-75424458 | None:intergenic | 30.0% | |
CAAAAGCAACAATGATTTAG+AGG | - | chr6.1:75426343-75426362 | MS.gene052453:intron | 30.0% | |
CAATAATAACAAAGTAGCAG+TGG | - | chr6.1:75426619-75426638 | MS.gene052453:intron | 30.0% | |
CAATAATATTCAACAACACG+AGG | + | chr6.1:75423951-75423970 | None:intergenic | 30.0% | |
CAGGAGATATTGAAGATAAT+TGG | - | chr6.1:75425620-75425639 | MS.gene052453:intron | 30.0% | |
CTTATGTTGTTAACCAGTAT+TGG | - | chr6.1:75425216-75425235 | MS.gene052453:CDS | 30.0% | |
GATGAGAATGACAAATAAAG+AGG | + | chr6.1:75424091-75424110 | None:intergenic | 30.0% | |
GGGTACAAGTATATCAATTT+AGG | - | chr6.1:75424441-75424460 | MS.gene052453:intron | 30.0% | |
TGGTTGTAATATTCAAGCAA+TGG | - | chr6.1:75426152-75426171 | MS.gene052453:intron | 30.0% | |
TGTATATTCTCACACCTAAA+AGG | - | chr6.1:75426893-75426912 | MS.gene052453:CDS | 30.0% | |
TTTCATACGTTGTGTAAATC+AGG | - | chr6.1:75425392-75425411 | MS.gene052453:CDS | 30.0% | |
! | AGTGATGGAATAAAGTTAGT+TGG | + | chr6.1:75425764-75425783 | None:intergenic | 30.0% |
! | AGTTGATGCAAGAGATTTAT+GGG | - | chr6.1:75426718-75426737 | MS.gene052453:intron | 30.0% |
! | TAGTTGATGCAAGAGATTTA+TGG | - | chr6.1:75426717-75426736 | MS.gene052453:intron | 30.0% |
! | TTTATGTTGCAAAATGGACT+TGG | - | chr6.1:75424036-75424055 | MS.gene052453:intron | 30.0% |
! | TTTGCGTAATAATTTAGCTC+AGG | - | chr6.1:75425696-75425715 | MS.gene052453:CDS | 30.0% |
!! | GCTACTTTGTTATTATTGAG+AGG | + | chr6.1:75426617-75426636 | None:intergenic | 30.0% |
!!! | TTTTTTGAAACATAGGGGAT+GGG | - | chr6.1:75425549-75425568 | MS.gene052453:CDS | 30.0% |
AAATAGGCCCCTTTATTAGT+TGG | - | chr6.1:75426132-75426151 | MS.gene052453:CDS | 35.0% | |
AGTATAGTAGCAGCAATGAT+CGG | + | chr6.1:75424489-75424508 | None:intergenic | 35.0% | |
AGTGAAGCCCTATTAAAATC+GGG | - | chr6.1:75425427-75425446 | MS.gene052453:intron | 35.0% | |
ATGCCAAAACATTTGCTTCT+TGG | - | chr6.1:75425124-75425143 | MS.gene052453:intron | 35.0% | |
ATGGTATAAGCGTTAGAGAA+AGG | - | chr6.1:75425293-75425312 | MS.gene052453:intron | 35.0% | |
GAAAGTTTAATCCGAGATAC+AGG | - | chr6.1:75424278-75424297 | MS.gene052453:intron | 35.0% | |
GAAGTTATTGCAGTAAACCA+AGG | - | chr6.1:75426207-75426226 | MS.gene052453:intron | 35.0% | |
GAGTGAAGCCCTATTAAAAT+CGG | - | chr6.1:75425426-75425445 | MS.gene052453:intron | 35.0% | |
GCTCATTATATTCACAGGAA+AGG | - | chr6.1:75424935-75424954 | MS.gene052453:intron | 35.0% | |
TAATGCCCAAATGCTGAAAT+GGG | + | chr6.1:75426022-75426041 | None:intergenic | 35.0% | |
TATAGAAGTCATGCTAGTGA+TGG | + | chr6.1:75425779-75425798 | None:intergenic | 35.0% | |
TCAAGAAAGTCTACTTACCT+TGG | + | chr6.1:75426227-75426246 | None:intergenic | 35.0% | |
TCTTCTTCTCTATGTGTGAA+TGG | - | chr6.1:75425458-75425477 | MS.gene052453:intron | 35.0% | |
TGACACTTACATGTTTCTTG+TGG | - | chr6.1:75426284-75426303 | MS.gene052453:intron | 35.0% | |
TGATGTTCAGATGGAATAGT+TGG | - | chr6.1:75424231-75424250 | MS.gene052453:intron | 35.0% | |
TGCCAAAACATTTGCTTCTT+GGG | - | chr6.1:75425125-75425144 | MS.gene052453:intron | 35.0% | |
TGTGAGAATATACATCTTGC+AGG | + | chr6.1:75426887-75426906 | None:intergenic | 35.0% | |
TGTGGTATTGCAGATAAACT+TGG | - | chr6.1:75426302-75426321 | MS.gene052453:intron | 35.0% | |
TTGGGAATTTATTCAGATGC+CGG | - | chr6.1:75424965-75424984 | MS.gene052453:intron | 35.0% | |
TTTAATAGGGCTTCACTCAT+TGG | + | chr6.1:75425424-75425443 | None:intergenic | 35.0% | |
! | CCAACTATTTCCAACACTTT+TGG | + | chr6.1:75425593-75425612 | None:intergenic | 35.0% |
! | CTCTAGCTCATTATATTCAC+AGG | - | chr6.1:75424930-75424949 | MS.gene052453:intron | 35.0% |
! | TACCCAAGAAGCAAATGTTT+TGG | + | chr6.1:75425130-75425149 | None:intergenic | 35.0% |
! | TCAGATATAGGTCTGAAATC+AGG | - | chr6.1:75426689-75426708 | MS.gene052453:intron | 35.0% |
! | TGGAATAGTTGGAACCATTT+TGG | - | chr6.1:75424242-75424261 | MS.gene052453:intron | 35.0% |
!! | CATTAGTTTGCATTTATCGC+AGG | + | chr6.1:75426476-75426495 | None:intergenic | 35.0% |
!! | CCAAAAGTGTTGGAAATAGT+TGG | - | chr6.1:75425590-75425609 | MS.gene052453:intron | 35.0% |
!!! | CTTTTTTGAAACATAGGGGA+TGG | - | chr6.1:75425548-75425567 | MS.gene052453:CDS | 35.0% |
AACGTTTCCTTCAGGAATCA+AGG | - | chr6.1:75424907-75424926 | MS.gene052453:intron | 40.0% | |
AAGCCCTATTAAAATCGGGA+AGG | - | chr6.1:75425431-75425450 | MS.gene052453:intron | 40.0% | |
ACTTGTAGTAAACGTATGCC+TGG | - | chr6.1:75425078-75425097 | MS.gene052453:intron | 40.0% | |
AGAACTTAATCGAGACTCAC+AGG | - | chr6.1:75424697-75424716 | MS.gene052453:intron | 40.0% | |
ATTTCATGTCCTAGTGATCC+AGG | + | chr6.1:75425099-75425118 | None:intergenic | 40.0% | |
CTAATGCCCAAATGCTGAAA+TGG | + | chr6.1:75426023-75426042 | None:intergenic | 40.0% | |
GATATGCTCGAAGTTGGAAA+TGG | - | chr6.1:75425970-75425989 | MS.gene052453:intron | 40.0% | |
GCAGATAAACTTGGAGTTCA+GGG | - | chr6.1:75426311-75426330 | MS.gene052453:intron | 40.0% | |
GGAAATAGTTGGAGAACAAC+AGG | - | chr6.1:75425601-75425620 | MS.gene052453:intron | 40.0% | |
TATCATTTCAGCTGATGCGA+TGG | - | chr6.1:75424395-75424414 | MS.gene052453:intron | 40.0% | |
TCTATGTGTGAATGGTAAGC+TGG | - | chr6.1:75425466-75425485 | MS.gene052453:intron | 40.0% | |
TCTTCAGCTGCTCGATTATT+AGG | - | chr6.1:75423985-75424004 | MS.gene052453:CDS | 40.0% | |
TGATGCAAGAGATTTATGGG+AGG | - | chr6.1:75426721-75426740 | MS.gene052453:intron | 40.0% | |
TGCAGATAAACTTGGAGTTC+AGG | - | chr6.1:75426310-75426329 | MS.gene052453:intron | 40.0% | |
TGGGAATTTATTCAGATGCC+GGG | - | chr6.1:75424966-75424985 | MS.gene052453:intron | 40.0% | |
TTAGGGAAATATGGTTCCCA+AGG | - | chr6.1:75424880-75424899 | MS.gene052453:intron | 40.0% | |
TTATGGGAGGTAAGAGAGTT+AGG | - | chr6.1:75426734-75426753 | MS.gene052453:intron | 40.0% | |
TTTCAGACCTATATCTGACC+AGG | + | chr6.1:75426687-75426706 | None:intergenic | 40.0% | |
TTTCCAACTTCGAGCATATC+AGG | + | chr6.1:75425970-75425989 | None:intergenic | 40.0% | |
! | ACAAAGTAGCAGTGGTCTTA+TGG | - | chr6.1:75426627-75426646 | MS.gene052453:intron | 40.0% |
!! | CGACCTTCCCGATTTTAATA+GGG | + | chr6.1:75425437-75425456 | None:intergenic | 40.0% |
!! | TCGACCTTCCCGATTTTAAT+AGG | + | chr6.1:75425438-75425457 | None:intergenic | 40.0% |
AAACGTATGCCTGGATCACT+AGG | - | chr6.1:75425087-75425106 | MS.gene052453:intron | 45.0% | |
AAGGCTTCAACGTTTCCTTC+AGG | - | chr6.1:75424899-75424918 | MS.gene052453:intron | 45.0% | |
AATAGGGCTTCACTCATTGG+TGG | + | chr6.1:75425421-75425440 | None:intergenic | 45.0% | |
AATCGAGCAGCTGAAGATGA+CGG | + | chr6.1:75423982-75424001 | None:intergenic | 45.0% | |
ACTGCATCCTGGTCAGATAT+AGG | - | chr6.1:75426677-75426696 | MS.gene052453:intron | 45.0% | |
AGTTCTGCCCAACAATCATC+TGG | + | chr6.1:75424683-75424702 | None:intergenic | 45.0% | |
ATCGTGCCCATTTCAGCATT+TGG | - | chr6.1:75426013-75426032 | MS.gene052453:intron | 45.0% | |
ATGCAACAGTAACTGCATCC+TGG | - | chr6.1:75426666-75426685 | MS.gene052453:intron | 45.0% | |
ATGCTCGAAGTTGGAAATGG+AGG | - | chr6.1:75425973-75425992 | MS.gene052453:intron | 45.0% | |
ATGGGAAGATCCAGCAACAT+GGG | - | chr6.1:75425567-75425586 | MS.gene052453:intron | 45.0% | |
CAATTTAGGTAGGTGGCAAG+TGG | - | chr6.1:75424455-75424474 | MS.gene052453:intron | 45.0% | |
CACAGGAAAGGCTTGAAGTT+GGG | - | chr6.1:75424947-75424966 | MS.gene052453:intron | 45.0% | |
CAGCATTTGGGCATTAGCTA+AGG | - | chr6.1:75426026-75426045 | MS.gene052453:intron | 45.0% | |
CTATGGATATAGGTTTGGGC+AGG | - | chr6.1:75426590-75426609 | MS.gene052453:intron | 45.0% | |
GAAGGAAACGTTGAAGCCTT+GGG | + | chr6.1:75424899-75424918 | None:intergenic | 45.0% | |
GACAAATGGGCATCTTATGC+CGG | - | chr6.1:75425811-75425830 | MS.gene052453:intron | 45.0% | |
GATCCTGATATGCTCGAAGT+TGG | - | chr6.1:75425964-75425983 | MS.gene052453:intron | 45.0% | |
GCAGCACTCAACACAATCAT+TGG | - | chr6.1:75426825-75426844 | MS.gene052453:CDS | 45.0% | |
GTGTGAATGGTAAGCTGGAT+TGG | - | chr6.1:75425471-75425490 | MS.gene052453:intron | 45.0% | |
TAATTACCATTCCACCCTCC+AGG | + | chr6.1:75425838-75425857 | None:intergenic | 45.0% | |
TCACAGGAAAGGCTTGAAGT+TGG | - | chr6.1:75424946-75424965 | MS.gene052453:intron | 45.0% | |
TCGTGCCCATTTCAGCATTT+GGG | - | chr6.1:75426014-75426033 | MS.gene052453:intron | 45.0% | |
TGAAGGAAACGTTGAAGCCT+TGG | + | chr6.1:75424900-75424919 | None:intergenic | 45.0% | |
! | AAATGGAGGCATGACAACAG+AGG | - | chr6.1:75425987-75426006 | MS.gene052453:intron | 45.0% |
GATGGGAAGATCCAGCAACA+TGG | - | chr6.1:75425566-75425585 | MS.gene052453:intron | 50.0% | |
GCTAGAGCCTTGATTCCTGA+AGG | + | chr6.1:75424917-75424936 | None:intergenic | 50.0% | |
! | ACACTTTTGGCCCATGTTGC+TGG | + | chr6.1:75425580-75425599 | None:intergenic | 50.0% |
! | AGAGGGTATAGCATACCCCA+TGG | + | chr6.1:75424073-75424092 | None:intergenic | 50.0% |
! | GAGGGTATAGCATACCCCAT+GGG | + | chr6.1:75424072-75424091 | None:intergenic | 50.0% |
! | GCAACATGGGCCAAAAGTGT+TGG | - | chr6.1:75425580-75425599 | MS.gene052453:intron | 50.0% |
ACTTGGTCAGACACCTCCCA+TGG | - | chr6.1:75424053-75424072 | MS.gene052453:intron | 55.0% | |
CATCTTATGCCGGACCTGGA+GGG | - | chr6.1:75425821-75425840 | MS.gene052453:intron | 55.0% | |
CTTGGTCAGACACCTCCCAT+GGG | - | chr6.1:75424054-75424073 | MS.gene052453:intron | 55.0% | |
GGTATAGCATACCCCATGGG+AGG | + | chr6.1:75424069-75424088 | None:intergenic | 55.0% | |
TTGGTCAGACACCTCCCATG+GGG | - | chr6.1:75424055-75424074 | MS.gene052453:intron | 55.0% | |
! | GCTGATGCGATGGTGTCAAC+TGG | - | chr6.1:75424405-75424424 | MS.gene052453:intron | 55.0% |
!! | CAACTGGACTTGCTGCCCTA+GGG | - | chr6.1:75424421-75424440 | MS.gene052453:intron | 55.0% |
!! | TCAACTGGACTTGCTGCCCT+AGG | - | chr6.1:75424420-75424439 | MS.gene052453:intron | 55.0% |
ACCATTCCACCCTCCAGGTC+CGG | + | chr6.1:75425833-75425852 | None:intergenic | 60.0% | |
GCATCTTATGCCGGACCTGG+AGG | - | chr6.1:75425820-75425839 | MS.gene052453:intron | 60.0% | |
TGGGCATCTTATGCCGGACC+TGG | - | chr6.1:75425817-75425836 | MS.gene052453:intron | 60.0% | |
CTTATGCCGGACCTGGAGGG+TGG | - | chr6.1:75425824-75425843 | MS.gene052453:intron | 65.0% | |
GCCGGACCTGGAGGGTGGAA+TGG | - | chr6.1:75425829-75425848 | MS.gene052453:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 75423916 | 75426921 | 75423916 | ID=MS.gene052453 |
chr6.1 | mRNA | 75423916 | 75426921 | 75423916 | ID=MS.gene052453.t1;Parent=MS.gene052453 |
chr6.1 | exon | 75426761 | 75426921 | 75426761 | ID=MS.gene052453.t1.exon1;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75426761 | 75426921 | 75426761 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75426538 | 75426596 | 75426538 | ID=MS.gene052453.t1.exon2;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75426538 | 75426596 | 75426538 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75426375 | 75426431 | 75426375 | ID=MS.gene052453.t1.exon3;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75426375 | 75426431 | 75426375 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75426119 | 75426153 | 75426119 | ID=MS.gene052453.t1.exon4;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75426119 | 75426153 | 75426119 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75425850 | 75425953 | 75425850 | ID=MS.gene052453.t1.exon5;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75425850 | 75425953 | 75425850 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75425691 | 75425766 | 75425691 | ID=MS.gene052453.t1.exon6;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75425691 | 75425766 | 75425691 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75425523 | 75425581 | 75425523 | ID=MS.gene052453.t1.exon7;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75425523 | 75425581 | 75425523 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75425358 | 75425423 | 75425358 | ID=MS.gene052453.t1.exon8;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75425358 | 75425423 | 75425358 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75425190 | 75425273 | 75425190 | ID=MS.gene052453.t1.exon9;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75425190 | 75425273 | 75425190 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75424987 | 75425051 | 75424987 | ID=MS.gene052453.t1.exon10;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75424987 | 75425051 | 75424987 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75424790 | 75424872 | 75424790 | ID=MS.gene052453.t1.exon11;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75424790 | 75424872 | 75424790 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75424609 | 75424699 | 75424609 | ID=MS.gene052453.t1.exon12;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75424609 | 75424699 | 75424609 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75424473 | 75424522 | 75424473 | ID=MS.gene052453.t1.exon13;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75424473 | 75424522 | 75424473 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75424095 | 75424235 | 75424095 | ID=MS.gene052453.t1.exon14;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75424095 | 75424235 | 75424095 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
chr6.1 | exon | 75423916 | 75424008 | 75423916 | ID=MS.gene052453.t1.exon15;Parent=MS.gene052453.t1 |
chr6.1 | CDS | 75423916 | 75424008 | 75423916 | ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1 |
Gene Sequence |
Protein sequence |