AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052453


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052453.t1 MTR_6g086625 96.814 408 12 1 1 407 1 408 0.0 816
MS.gene052453.t1 MTR_6g086575 93.120 407 28 0 1 407 1 407 0.0 788
MS.gene052453.t1 MTR_1g077480 90.097 414 34 1 1 407 1 414 0.0 772
MS.gene052453.t1 MTR_1g077520 80.988 405 73 2 3 404 4 407 0.0 696
MS.gene052453.t1 MTR_6g069140 77.778 387 80 1 24 404 33 419 0.0 636
MS.gene052453.t1 MTR_1g077520 81.325 332 58 2 3 331 4 334 0.0 575
MS.gene052453.t1 MTR_7g073640 60.599 401 153 4 7 404 9 407 0.0 509
MS.gene052453.t1 MTR_7g073650 62.992 381 138 3 27 404 26 406 0.0 509
MS.gene052453.t1 MTR_3g094160 63.342 371 131 3 41 407 59 428 2.69e-178 504
MS.gene052453.t1 MTR_1g078410 62.911 213 20 3 1 206 1 161 1.53e-81 248
MS.gene052453.t1 MTR_0279s0030 51.220 123 58 2 284 404 101 223 3.27e-36 132
MS.gene052453.t1 MTR_0279s0030 51.220 123 58 2 284 404 185 307 4.31e-35 132
MS.gene052453.t1 MTR_0279s0030 51.220 123 58 2 284 404 250 372 1.61e-34 132
MS.gene052453.t1 MTR_8g089725 25.243 515 256 21 7 405 4 505 1.19e-24 105
MS.gene052453.t1 MTR_8g089735 25.049 515 257 21 7 405 4 505 7.12e-24 103
MS.gene052453.t1 MTR_3g086580 25.505 396 195 13 8 312 3 389 3.57e-22 99.4
MS.gene052453.t1 MTR_8g089745 25.063 395 199 14 4 313 1 383 8.47e-22 97.4
MS.gene052453.t1 MTR_8g089745 25.063 395 199 14 4 313 1 383 2.05e-21 97.1
MS.gene052453.t1 MTR_2g096530 27.221 349 164 12 51 312 40 385 3.94e-21 95.9
MS.gene052453.t1 MTR_8g089740 25.897 390 191 15 10 313 2 379 4.91e-21 95.9
MS.gene052453.t1 MTR_3g094180 50.000 72 33 1 317 385 7 78 3.20e-14 68.6
MS.gene052453.t1 MTR_3g086580 29.609 179 97 6 161 312 26 202 6.02e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052453.t1 AT5G08370 68.564 404 112 2 4 407 8 396 0.0 587
MS.gene052453.t1 AT5G08370 72.162 370 103 0 38 407 1 370 0.0 584
MS.gene052453.t1 AT5G08380 59.360 406 160 3 3 404 4 408 0.0 510
MS.gene052453.t1 AT3G56310 63.686 369 129 4 41 405 63 430 3.79e-176 498
MS.gene052453.t1 AT3G56310 59.621 369 120 5 41 405 63 406 1.16e-157 451
MS.gene052453.t1 AT5G08380 61.342 313 119 1 3 313 4 316 5.21e-145 415
MS.gene052453.t1 AT3G26380 25.788 349 169 12 51 312 42 387 2.83e-21 95.9
MS.gene052453.t1 AT3G26380 25.788 349 169 12 51 312 42 387 6.20e-21 95.5

Find 103 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACATAAAACTCTTAATTT+TGG 0.177963 6.1:+75426793 None:intergenic
TCTTCAGCTGCTCGATTATT+AGG 0.239998 6.1:-75426830 MS.gene052453:CDS
TAGTTGATGCAAGAGATTTA+TGG 0.248040 6.1:-75424098 MS.gene052453:CDS
TTAAATATGTTAGGGAAATA+TGG 0.249332 6.1:-75425944 MS.gene052453:intron
CAGGAGATATTGAAGATAAT+TGG 0.256846 6.1:-75425195 MS.gene052453:CDS
ATGCCAAAACATTTGCTTCT+TGG 0.258381 6.1:-75425691 MS.gene052453:CDS
TGGAATAGTTGGAACCATTT+TGG 0.262795 6.1:-75426573 MS.gene052453:CDS
ACAAAGTAGCAGTGGTCTTA+TGG 0.274504 6.1:-75424188 MS.gene052453:CDS
ATCGTGCCCATTTCAGCATT+TGG 0.278804 6.1:-75424802 MS.gene052453:CDS
TGCCAAAACATTTGCTTCTT+GGG 0.290074 6.1:-75425690 MS.gene052453:intron
CCAACTATTTCCAACACTTT+TGG 0.291358 6.1:+75425225 None:intergenic
CATTTATATCACAACCAAAA+TGG 0.295557 6.1:+75426559 None:intergenic
GGGTACAAGTATATCAATTT+AGG 0.295779 6.1:-75426374 MS.gene052453:intron
TTTCCAACTTCGAGCATATC+AGG 0.305679 6.1:+75424848 None:intergenic
TGCAGATAAACTTGGAGTTC+AGG 0.311238 6.1:-75424505 MS.gene052453:intron
AGTTGATGCAAGAGATTTAT+GGG 0.323036 6.1:-75424097 MS.gene052453:CDS
ATATTACAACCAACTAATAA+AGG 0.326535 6.1:+75424674 None:intergenic
TGTATATTCTCACACCTAAA+AGG 0.330875 6.1:-75423922 MS.gene052453:CDS
CTAATGCCCAAATGCTGAAA+TGG 0.353093 6.1:+75424795 None:intergenic
GAGTGAAGCCCTATTAAAAT+CGG 0.355906 6.1:-75425389 MS.gene052453:CDS
CAAAAGCAACAATGATTTAG+AGG 0.357578 6.1:-75424472 MS.gene052453:intron
TCGTGCCCATTTCAGCATTT+GGG 0.362441 6.1:-75424801 MS.gene052453:CDS
TACCCAAGAAGCAAATGTTT+TGG 0.362595 6.1:+75425688 None:intergenic
TATGATAATTGTGAAAATAA+TGG 0.367657 6.1:-75425541 MS.gene052453:CDS
TAATAGATGTAAACGACAAA+TGG 0.370517 6.1:-75425018 MS.gene052453:CDS
TATTACAACCAACTAATAAA+GGG 0.382437 6.1:+75424675 None:intergenic
TTTAATAGGGCTTCACTCAT+TGG 0.397610 6.1:+75425394 None:intergenic
TGTGAGAATATACATCTTGC+AGG 0.399454 6.1:+75423931 None:intergenic
GCAGCACTCAACACAATCAT+TGG 0.401559 6.1:-75423990 MS.gene052453:intron
TGAAGGAAACGTTGAAGCCT+TGG 0.402252 6.1:+75425918 None:intergenic
GCAGATAAACTTGGAGTTCA+GGG 0.405966 6.1:-75424504 MS.gene052453:intron
AACGTTTCCTTCAGGAATCA+AGG 0.411562 6.1:-75425908 MS.gene052453:CDS
ACTGCATCCTGGTCAGATAT+AGG 0.412586 6.1:-75424138 MS.gene052453:CDS
AAATAGGCCCCTTTATTAGT+TGG 0.414998 6.1:-75424683 MS.gene052453:intron
TGATGTTCAGATGGAATAGT+TGG 0.418115 6.1:-75426584 MS.gene052453:intron
CACAGGAAAGGCTTGAAGTT+GGG 0.422305 6.1:-75425868 MS.gene052453:CDS
GAAAGTTTAATCCGAGATAC+AGG 0.426792 6.1:-75426537 MS.gene052453:intron
GGAAATAGTTGGAGAACAAC+AGG 0.431528 6.1:-75425214 MS.gene052453:CDS
GCTGATGCGATGGTGTCAAC+TGG 0.433263 6.1:-75426410 MS.gene052453:CDS
TCAACTGGACTTGCTGCCCT+AGG 0.444646 6.1:-75426395 MS.gene052453:CDS
ACCATTCCACCCTCCAGGTC+CGG 0.451609 6.1:+75424985 None:intergenic
TAGAGCAATGGCTAGATTGA+TGG 0.453710 6.1:-75426906 None:intergenic
GATATGCTCGAAGTTGGAAA+TGG 0.467367 6.1:-75424845 MS.gene052453:CDS
ATTTCATGTCCTAGTGATCC+AGG 0.469966 6.1:+75425719 None:intergenic
TAATGCCCAAATGCTGAAAT+GGG 0.470549 6.1:+75424796 None:intergenic
CATCTTATGCCGGACCTGGA+GGG 0.477735 6.1:-75424994 MS.gene052453:CDS
TGTGGTATTGCAGATAAACT+TGG 0.480571 6.1:-75424513 MS.gene052453:intron
AATAGATGTAAACGACAAAT+GGG 0.481120 6.1:-75425017 MS.gene052453:CDS
TTGGGAATTTATTCAGATGC+CGG 0.482913 6.1:-75425850 MS.gene052453:CDS
CAGCATTTGGGCATTAGCTA+AGG 0.486215 6.1:-75424789 MS.gene052453:intron
CCAAAAGTGTTGGAAATAGT+TGG 0.487306 6.1:-75425225 MS.gene052453:CDS
TGGGCATCTTATGCCGGACC+TGG 0.489124 6.1:-75424998 MS.gene052453:CDS
AATTGATATACTTGTACCCT+AGG 0.490789 6.1:+75426378 None:intergenic
TCTTCTTCTCTATGTGTGAA+TGG 0.493915 6.1:-75425357 MS.gene052453:intron
GACAAATGGGCATCTTATGC+CGG 0.494595 6.1:-75425004 MS.gene052453:CDS
AAGGCTTCAACGTTTCCTTC+AGG 0.495513 6.1:-75425916 MS.gene052453:CDS
ACTTGTAGTAAACGTATGCC+TGG 0.499229 6.1:-75425737 MS.gene052453:CDS
GATCCTGATATGCTCGAAGT+TGG 0.500070 6.1:-75424851 MS.gene052453:CDS
CTCTAGCTCATTATATTCAC+AGG 0.500877 6.1:-75425885 MS.gene052453:CDS
TCACAGGAAAGGCTTGAAGT+TGG 0.502672 6.1:-75425869 MS.gene052453:CDS
TTTATGTTGCAAAATGGACT+TGG 0.502706 6.1:-75426779 MS.gene052453:CDS
GAAGGAAACGTTGAAGCCTT+GGG 0.511297 6.1:+75425919 None:intergenic
ATATTGAAGATAATTGGAAT+AGG 0.514399 6.1:-75425189 MS.gene052453:intron
TCAGATATAGGTCTGAAATC+AGG 0.516980 6.1:-75424126 MS.gene052453:CDS
TAATTACCATTCCACCCTCC+AGG 0.519173 6.1:+75424980 None:intergenic
ATGGTATAAGCGTTAGAGAA+AGG 0.522615 6.1:-75425522 MS.gene052453:intron
GCTACTTTGTTATTATTGAG+AGG 0.523143 6.1:+75424201 None:intergenic
CAACTGGACTTGCTGCCCTA+GGG 0.527150 6.1:-75426394 MS.gene052453:CDS
AATAGGGCTTCACTCATTGG+TGG 0.529350 6.1:+75425397 None:intergenic
TGGGAATTTATTCAGATGCC+GGG 0.530152 6.1:-75425849 MS.gene052453:intron
AGTGAAGCCCTATTAAAATC+GGG 0.533552 6.1:-75425388 MS.gene052453:CDS
GCCGGACCTGGAGGGTGGAA+TGG 0.535764 6.1:-75424986 MS.gene052453:intron
GCAACATGGGCCAAAAGTGT+TGG 0.545524 6.1:-75425235 MS.gene052453:CDS
CTATGGATATAGGTTTGGGC+AGG 0.545776 6.1:-75424225 MS.gene052453:intron
ATGGGAAGATCCAGCAACAT+GGG 0.549059 6.1:-75425248 MS.gene052453:CDS
TGGTTGTAATATTCAAGCAA+TGG 0.558395 6.1:-75424663 MS.gene052453:CDS
ATGCAACAGTAACTGCATCC+TGG 0.558672 6.1:-75424149 MS.gene052453:CDS
AAACGTATGCCTGGATCACT+AGG 0.565228 6.1:-75425728 MS.gene052453:CDS
GCTCATTATATTCACAGGAA+AGG 0.565444 6.1:-75425880 MS.gene052453:CDS
AAACATATATACCTGTATCT+CGG 0.565473 6.1:+75426526 None:intergenic
TATCATTTCAGCTGATGCGA+TGG 0.569529 6.1:-75426420 MS.gene052453:intron
GATGGGAAGATCCAGCAACA+TGG 0.570848 6.1:-75425249 MS.gene052453:CDS
TTAGGGAAATATGGTTCCCA+AGG 0.571959 6.1:-75425935 MS.gene052453:intron
AGAACTTAATCGAGACTCAC+AGG 0.572244 6.1:-75426118 MS.gene052453:intron
ACTTGGTCAGACACCTCCCA+TGG 0.576039 6.1:-75426762 MS.gene052453:CDS
GCATCTTATGCCGGACCTGG+AGG 0.581193 6.1:-75424995 MS.gene052453:CDS
CTTGGTCAGACACCTCCCAT+GGG 0.589037 6.1:-75426761 MS.gene052453:CDS
ATGCTCGAAGTTGGAAATGG+AGG 0.603679 6.1:-75424842 MS.gene052453:CDS
CAATAATAACAAAGTAGCAG+TGG 0.606485 6.1:-75424196 MS.gene052453:CDS
ATTACAACCAACTAATAAAG+GGG 0.610550 6.1:+75424676 None:intergenic
CTTATGCCGGACCTGGAGGG+TGG 0.613128 6.1:-75424991 MS.gene052453:CDS
AATCGAGCAGCTGAAGATGA+CGG 0.617892 6.1:+75426836 None:intergenic
GCTAGAGCCTTGATTCCTGA+AGG 0.622037 6.1:+75425901 None:intergenic
TTTCAGACCTATATCTGACC+AGG 0.624392 6.1:+75424131 None:intergenic
CAATAATATTCAACAACACG+AGG 0.627185 6.1:+75426867 None:intergenic
GAAGTTATTGCAGTAAACCA+AGG 0.635887 6.1:-75424608 MS.gene052453:intron
ATTGATATACTTGTACCCTA+GGG 0.641607 6.1:+75426379 None:intergenic
GAGGGTATAGCATACCCCAT+GGG 0.653031 6.1:+75426746 None:intergenic
AAGCCCTATTAAAATCGGGA+AGG 0.657228 6.1:-75425384 MS.gene052453:CDS
AAATGGAGGCATGACAACAG+AGG 0.691145 6.1:-75424828 MS.gene052453:CDS
GGTATAGCATACCCCATGGG+AGG 0.697835 6.1:+75426749 None:intergenic
TGATGCAAGAGATTTATGGG+AGG 0.716729 6.1:-75424094 MS.gene052453:intron
TTGGTCAGACACCTCCCATG+GGG 0.730500 6.1:-75426760 MS.gene052453:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAACAATTTAAATTCATA+TGG - chr6.1:75426778-75426797 MS.gene052453:CDS 10.0%
!!! GTCTATTTTTAAAAAAATAT+AGG - chr6.1:75424792-75424811 MS.gene052453:CDS 10.0%
!! AAAATAAACATACAAATCAA+TGG + chr6.1:75424754-75424773 None:intergenic 15.0%
!! GATTATCATAAAAGAAAAAA+TGG + chr6.1:75424140-75424159 None:intergenic 15.0%
!! TATACTTTCATGTATTTAAT+TGG + chr6.1:75424187-75424206 None:intergenic 15.0%
!! TATGATAATTGTGAAAATAA+TGG - chr6.1:75425274-75425293 MS.gene052453:intron 15.0%
!! TCAAATAATGTATGTATATA+TGG + chr6.1:75425155-75425174 None:intergenic 15.0%
!! TTATTATATTTCCCTTTATA+TGG - chr6.1:75426371-75426390 MS.gene052453:intron 15.0%
!!! AATTTCTTTTTTGAAACATA+GGG - chr6.1:75425543-75425562 MS.gene052453:CDS 15.0%
!!! TAATTTCTTTTTTGAAACAT+AGG - chr6.1:75425542-75425561 MS.gene052453:CDS 15.0%
!! AAACTTAAACACCATATAAA+GGG + chr6.1:75426385-75426404 None:intergenic 20.0%
!! AAAGTAATATGTCTTGAATT+CGG - chr6.1:75426085-75426104 MS.gene052453:intron 20.0%
!! AACTGTAAAAATAATAGCTT+AGG + chr6.1:75424336-75424355 None:intergenic 20.0%
!! ACACAAATGATTTGATTATA+AGG + chr6.1:75426502-75426521 None:intergenic 20.0%
!! ACTAAAAATTCTATGGATAT+AGG - chr6.1:75426580-75426599 MS.gene052453:intron 20.0%
!! ACTGTAAAAATAATAGCTTA+GGG + chr6.1:75424335-75424354 None:intergenic 20.0%
!! ACTTCTTACTAAAAATTCTA+TGG - chr6.1:75426573-75426592 MS.gene052453:CDS 20.0%
!! ATATTACAACCAACTAATAA+AGG + chr6.1:75426144-75426163 None:intergenic 20.0%
!! ATATTGAAGATAATTGGAAT+AGG - chr6.1:75425626-75425645 MS.gene052453:intron 20.0%
!! ATTTGAATTTGAATGAACAA+TGG + chr6.1:75424113-75424132 None:intergenic 20.0%
!! TATTACAACCAACTAATAAA+GGG + chr6.1:75426143-75426162 None:intergenic 20.0%
!! TTAAATATGTTAGGGAAATA+TGG - chr6.1:75424871-75424890 MS.gene052453:intron 20.0%
!!! ATTGGTTCAAATTTTTCTTT+AGG - chr6.1:75425234-75425253 MS.gene052453:CDS 20.0%
!!! ATTTCTTTTTTGAAACATAG+GGG - chr6.1:75425544-75425563 MS.gene052453:CDS 20.0%
!!! CAACATAAAACTCTTAATTT+TGG + chr6.1:75424025-75424044 None:intergenic 20.0%
!!! GGTTTTTTAACTATTTTACT+CGG - chr6.1:75426106-75426125 MS.gene052453:intron 20.0%
!!! TATTTTCTTCAAATGCAAAT+AGG - chr6.1:75425325-75425344 MS.gene052453:intron 20.0%
!!! TTAAATTCATATGGTTTTGA+TGG - chr6.1:75426787-75426806 MS.gene052453:CDS 20.0%
!!! TTGGTTCAAATTTTTCTTTA+GGG - chr6.1:75425235-75425254 MS.gene052453:CDS 20.0%
! AAACATATATACCTGTATCT+CGG + chr6.1:75424292-75424311 None:intergenic 25.0%
! AAATTCTATGGATATAGGTT+TGG - chr6.1:75426585-75426604 MS.gene052453:intron 25.0%
! AAATTTAATATGTCGATACC+CGG + chr6.1:75424987-75425006 None:intergenic 25.0%
! AATAGATGTAAACGACAAAT+GGG - chr6.1:75425798-75425817 MS.gene052453:intron 25.0%
! AATTCTATGGATATAGGTTT+GGG - chr6.1:75426586-75426605 MS.gene052453:intron 25.0%
! ACAAGTATATCAATTTAGGT+AGG - chr6.1:75424445-75424464 MS.gene052453:intron 25.0%
! AGAAAAATTTGAACCAATAC+TGG + chr6.1:75425232-75425251 None:intergenic 25.0%
! ATGAGAATGACAAATAAAGA+GGG + chr6.1:75424090-75424109 None:intergenic 25.0%
! ATTACAACCAACTAATAAAG+GGG + chr6.1:75426142-75426161 None:intergenic 25.0%
! CAAACTTAAACACCATATAA+AGG + chr6.1:75426386-75426405 None:intergenic 25.0%
! CATACGAGGAATTAATATAT+TGG + chr6.1:75425922-75425941 None:intergenic 25.0%
! CATTTATATCACAACCAAAA+TGG + chr6.1:75424259-75424278 None:intergenic 25.0%
! CTGACAAGTTAAATATGTTA+GGG - chr6.1:75424863-75424882 MS.gene052453:intron 25.0%
! GATTCATAAAATTACTAGTG+AGG + chr6.1:75425866-75425885 None:intergenic 25.0%
! TAATAGATGTAAACGACAAA+TGG - chr6.1:75425797-75425816 MS.gene052453:intron 25.0%
! TAGTATCATTATAAGTTGTG+AGG + chr6.1:75426412-75426431 None:intergenic 25.0%
! TATTACTTTGTCTCAACAAT+AGG + chr6.1:75426074-75426093 None:intergenic 25.0%
! TCTGACAAGTTAAATATGTT+AGG - chr6.1:75424862-75424881 MS.gene052453:intron 25.0%
! TTAACTCTCAAATCAATACA+TGG - chr6.1:75426439-75426458 MS.gene052453:intron 25.0%
! TTATATTCATGATGTTCAGA+TGG - chr6.1:75424222-75424241 MS.gene052453:intron 25.0%
!! CTATTTTACTCGGTTTAAAT+AGG - chr6.1:75426116-75426135 MS.gene052453:intron 25.0%
!!! AAGAGTTTTATGTTGCAAAA+TGG - chr6.1:75424030-75424049 MS.gene052453:intron 25.0%
!!! TAACATATTTAACTTGTCAG+AGG + chr6.1:75424863-75424882 None:intergenic 25.0%
!!! TTTTTTTCCAGATGATTGTT+GGG - chr6.1:75424673-75424692 MS.gene052453:CDS 25.0%
!!! TTTTTTTTCCAGATGATTGT+TGG - chr6.1:75424672-75424691 MS.gene052453:CDS 25.0%
AAACATTAATGACACATACG+AGG + chr6.1:75425936-75425955 None:intergenic 30.0%
AATTGATATACTTGTACCCT+AGG + chr6.1:75424440-75424459 None:intergenic 30.0%
AGTATATCAATTTAGGTAGG+TGG - chr6.1:75424448-75424467 MS.gene052453:intron 30.0%
ATTGATATACTTGTACCCTA+GGG + chr6.1:75424439-75424458 None:intergenic 30.0%
CAAAAGCAACAATGATTTAG+AGG - chr6.1:75426343-75426362 MS.gene052453:intron 30.0%
CAATAATAACAAAGTAGCAG+TGG - chr6.1:75426619-75426638 MS.gene052453:intron 30.0%
CAATAATATTCAACAACACG+AGG + chr6.1:75423951-75423970 None:intergenic 30.0%
CAGGAGATATTGAAGATAAT+TGG - chr6.1:75425620-75425639 MS.gene052453:intron 30.0%
CTTATGTTGTTAACCAGTAT+TGG - chr6.1:75425216-75425235 MS.gene052453:CDS 30.0%
GATGAGAATGACAAATAAAG+AGG + chr6.1:75424091-75424110 None:intergenic 30.0%
GGGTACAAGTATATCAATTT+AGG - chr6.1:75424441-75424460 MS.gene052453:intron 30.0%
TGGTTGTAATATTCAAGCAA+TGG - chr6.1:75426152-75426171 MS.gene052453:intron 30.0%
TGTATATTCTCACACCTAAA+AGG - chr6.1:75426893-75426912 MS.gene052453:CDS 30.0%
TTTCATACGTTGTGTAAATC+AGG - chr6.1:75425392-75425411 MS.gene052453:CDS 30.0%
! AGTGATGGAATAAAGTTAGT+TGG + chr6.1:75425764-75425783 None:intergenic 30.0%
! AGTTGATGCAAGAGATTTAT+GGG - chr6.1:75426718-75426737 MS.gene052453:intron 30.0%
! TAGTTGATGCAAGAGATTTA+TGG - chr6.1:75426717-75426736 MS.gene052453:intron 30.0%
! TTTATGTTGCAAAATGGACT+TGG - chr6.1:75424036-75424055 MS.gene052453:intron 30.0%
! TTTGCGTAATAATTTAGCTC+AGG - chr6.1:75425696-75425715 MS.gene052453:CDS 30.0%
!! GCTACTTTGTTATTATTGAG+AGG + chr6.1:75426617-75426636 None:intergenic 30.0%
!!! TTTTTTGAAACATAGGGGAT+GGG - chr6.1:75425549-75425568 MS.gene052453:CDS 30.0%
AAATAGGCCCCTTTATTAGT+TGG - chr6.1:75426132-75426151 MS.gene052453:CDS 35.0%
AGTATAGTAGCAGCAATGAT+CGG + chr6.1:75424489-75424508 None:intergenic 35.0%
AGTGAAGCCCTATTAAAATC+GGG - chr6.1:75425427-75425446 MS.gene052453:intron 35.0%
ATGCCAAAACATTTGCTTCT+TGG - chr6.1:75425124-75425143 MS.gene052453:intron 35.0%
ATGGTATAAGCGTTAGAGAA+AGG - chr6.1:75425293-75425312 MS.gene052453:intron 35.0%
GAAAGTTTAATCCGAGATAC+AGG - chr6.1:75424278-75424297 MS.gene052453:intron 35.0%
GAAGTTATTGCAGTAAACCA+AGG - chr6.1:75426207-75426226 MS.gene052453:intron 35.0%
GAGTGAAGCCCTATTAAAAT+CGG - chr6.1:75425426-75425445 MS.gene052453:intron 35.0%
GCTCATTATATTCACAGGAA+AGG - chr6.1:75424935-75424954 MS.gene052453:intron 35.0%
TAATGCCCAAATGCTGAAAT+GGG + chr6.1:75426022-75426041 None:intergenic 35.0%
TATAGAAGTCATGCTAGTGA+TGG + chr6.1:75425779-75425798 None:intergenic 35.0%
TCAAGAAAGTCTACTTACCT+TGG + chr6.1:75426227-75426246 None:intergenic 35.0%
TCTTCTTCTCTATGTGTGAA+TGG - chr6.1:75425458-75425477 MS.gene052453:intron 35.0%
TGACACTTACATGTTTCTTG+TGG - chr6.1:75426284-75426303 MS.gene052453:intron 35.0%
TGATGTTCAGATGGAATAGT+TGG - chr6.1:75424231-75424250 MS.gene052453:intron 35.0%
TGCCAAAACATTTGCTTCTT+GGG - chr6.1:75425125-75425144 MS.gene052453:intron 35.0%
TGTGAGAATATACATCTTGC+AGG + chr6.1:75426887-75426906 None:intergenic 35.0%
TGTGGTATTGCAGATAAACT+TGG - chr6.1:75426302-75426321 MS.gene052453:intron 35.0%
TTGGGAATTTATTCAGATGC+CGG - chr6.1:75424965-75424984 MS.gene052453:intron 35.0%
TTTAATAGGGCTTCACTCAT+TGG + chr6.1:75425424-75425443 None:intergenic 35.0%
! CCAACTATTTCCAACACTTT+TGG + chr6.1:75425593-75425612 None:intergenic 35.0%
! CTCTAGCTCATTATATTCAC+AGG - chr6.1:75424930-75424949 MS.gene052453:intron 35.0%
! TACCCAAGAAGCAAATGTTT+TGG + chr6.1:75425130-75425149 None:intergenic 35.0%
! TCAGATATAGGTCTGAAATC+AGG - chr6.1:75426689-75426708 MS.gene052453:intron 35.0%
! TGGAATAGTTGGAACCATTT+TGG - chr6.1:75424242-75424261 MS.gene052453:intron 35.0%
!! CATTAGTTTGCATTTATCGC+AGG + chr6.1:75426476-75426495 None:intergenic 35.0%
!! CCAAAAGTGTTGGAAATAGT+TGG - chr6.1:75425590-75425609 MS.gene052453:intron 35.0%
!!! CTTTTTTGAAACATAGGGGA+TGG - chr6.1:75425548-75425567 MS.gene052453:CDS 35.0%
AACGTTTCCTTCAGGAATCA+AGG - chr6.1:75424907-75424926 MS.gene052453:intron 40.0%
AAGCCCTATTAAAATCGGGA+AGG - chr6.1:75425431-75425450 MS.gene052453:intron 40.0%
ACTTGTAGTAAACGTATGCC+TGG - chr6.1:75425078-75425097 MS.gene052453:intron 40.0%
AGAACTTAATCGAGACTCAC+AGG - chr6.1:75424697-75424716 MS.gene052453:intron 40.0%
ATTTCATGTCCTAGTGATCC+AGG + chr6.1:75425099-75425118 None:intergenic 40.0%
CTAATGCCCAAATGCTGAAA+TGG + chr6.1:75426023-75426042 None:intergenic 40.0%
GATATGCTCGAAGTTGGAAA+TGG - chr6.1:75425970-75425989 MS.gene052453:intron 40.0%
GCAGATAAACTTGGAGTTCA+GGG - chr6.1:75426311-75426330 MS.gene052453:intron 40.0%
GGAAATAGTTGGAGAACAAC+AGG - chr6.1:75425601-75425620 MS.gene052453:intron 40.0%
TATCATTTCAGCTGATGCGA+TGG - chr6.1:75424395-75424414 MS.gene052453:intron 40.0%
TCTATGTGTGAATGGTAAGC+TGG - chr6.1:75425466-75425485 MS.gene052453:intron 40.0%
TCTTCAGCTGCTCGATTATT+AGG - chr6.1:75423985-75424004 MS.gene052453:CDS 40.0%
TGATGCAAGAGATTTATGGG+AGG - chr6.1:75426721-75426740 MS.gene052453:intron 40.0%
TGCAGATAAACTTGGAGTTC+AGG - chr6.1:75426310-75426329 MS.gene052453:intron 40.0%
TGGGAATTTATTCAGATGCC+GGG - chr6.1:75424966-75424985 MS.gene052453:intron 40.0%
TTAGGGAAATATGGTTCCCA+AGG - chr6.1:75424880-75424899 MS.gene052453:intron 40.0%
TTATGGGAGGTAAGAGAGTT+AGG - chr6.1:75426734-75426753 MS.gene052453:intron 40.0%
TTTCAGACCTATATCTGACC+AGG + chr6.1:75426687-75426706 None:intergenic 40.0%
TTTCCAACTTCGAGCATATC+AGG + chr6.1:75425970-75425989 None:intergenic 40.0%
! ACAAAGTAGCAGTGGTCTTA+TGG - chr6.1:75426627-75426646 MS.gene052453:intron 40.0%
!! CGACCTTCCCGATTTTAATA+GGG + chr6.1:75425437-75425456 None:intergenic 40.0%
!! TCGACCTTCCCGATTTTAAT+AGG + chr6.1:75425438-75425457 None:intergenic 40.0%
AAACGTATGCCTGGATCACT+AGG - chr6.1:75425087-75425106 MS.gene052453:intron 45.0%
AAGGCTTCAACGTTTCCTTC+AGG - chr6.1:75424899-75424918 MS.gene052453:intron 45.0%
AATAGGGCTTCACTCATTGG+TGG + chr6.1:75425421-75425440 None:intergenic 45.0%
AATCGAGCAGCTGAAGATGA+CGG + chr6.1:75423982-75424001 None:intergenic 45.0%
ACTGCATCCTGGTCAGATAT+AGG - chr6.1:75426677-75426696 MS.gene052453:intron 45.0%
AGTTCTGCCCAACAATCATC+TGG + chr6.1:75424683-75424702 None:intergenic 45.0%
ATCGTGCCCATTTCAGCATT+TGG - chr6.1:75426013-75426032 MS.gene052453:intron 45.0%
ATGCAACAGTAACTGCATCC+TGG - chr6.1:75426666-75426685 MS.gene052453:intron 45.0%
ATGCTCGAAGTTGGAAATGG+AGG - chr6.1:75425973-75425992 MS.gene052453:intron 45.0%
ATGGGAAGATCCAGCAACAT+GGG - chr6.1:75425567-75425586 MS.gene052453:intron 45.0%
CAATTTAGGTAGGTGGCAAG+TGG - chr6.1:75424455-75424474 MS.gene052453:intron 45.0%
CACAGGAAAGGCTTGAAGTT+GGG - chr6.1:75424947-75424966 MS.gene052453:intron 45.0%
CAGCATTTGGGCATTAGCTA+AGG - chr6.1:75426026-75426045 MS.gene052453:intron 45.0%
CTATGGATATAGGTTTGGGC+AGG - chr6.1:75426590-75426609 MS.gene052453:intron 45.0%
GAAGGAAACGTTGAAGCCTT+GGG + chr6.1:75424899-75424918 None:intergenic 45.0%
GACAAATGGGCATCTTATGC+CGG - chr6.1:75425811-75425830 MS.gene052453:intron 45.0%
GATCCTGATATGCTCGAAGT+TGG - chr6.1:75425964-75425983 MS.gene052453:intron 45.0%
GCAGCACTCAACACAATCAT+TGG - chr6.1:75426825-75426844 MS.gene052453:CDS 45.0%
GTGTGAATGGTAAGCTGGAT+TGG - chr6.1:75425471-75425490 MS.gene052453:intron 45.0%
TAATTACCATTCCACCCTCC+AGG + chr6.1:75425838-75425857 None:intergenic 45.0%
TCACAGGAAAGGCTTGAAGT+TGG - chr6.1:75424946-75424965 MS.gene052453:intron 45.0%
TCGTGCCCATTTCAGCATTT+GGG - chr6.1:75426014-75426033 MS.gene052453:intron 45.0%
TGAAGGAAACGTTGAAGCCT+TGG + chr6.1:75424900-75424919 None:intergenic 45.0%
! AAATGGAGGCATGACAACAG+AGG - chr6.1:75425987-75426006 MS.gene052453:intron 45.0%
GATGGGAAGATCCAGCAACA+TGG - chr6.1:75425566-75425585 MS.gene052453:intron 50.0%
GCTAGAGCCTTGATTCCTGA+AGG + chr6.1:75424917-75424936 None:intergenic 50.0%
! ACACTTTTGGCCCATGTTGC+TGG + chr6.1:75425580-75425599 None:intergenic 50.0%
! AGAGGGTATAGCATACCCCA+TGG + chr6.1:75424073-75424092 None:intergenic 50.0%
! GAGGGTATAGCATACCCCAT+GGG + chr6.1:75424072-75424091 None:intergenic 50.0%
! GCAACATGGGCCAAAAGTGT+TGG - chr6.1:75425580-75425599 MS.gene052453:intron 50.0%
ACTTGGTCAGACACCTCCCA+TGG - chr6.1:75424053-75424072 MS.gene052453:intron 55.0%
CATCTTATGCCGGACCTGGA+GGG - chr6.1:75425821-75425840 MS.gene052453:intron 55.0%
CTTGGTCAGACACCTCCCAT+GGG - chr6.1:75424054-75424073 MS.gene052453:intron 55.0%
GGTATAGCATACCCCATGGG+AGG + chr6.1:75424069-75424088 None:intergenic 55.0%
TTGGTCAGACACCTCCCATG+GGG - chr6.1:75424055-75424074 MS.gene052453:intron 55.0%
! GCTGATGCGATGGTGTCAAC+TGG - chr6.1:75424405-75424424 MS.gene052453:intron 55.0%
!! CAACTGGACTTGCTGCCCTA+GGG - chr6.1:75424421-75424440 MS.gene052453:intron 55.0%
!! TCAACTGGACTTGCTGCCCT+AGG - chr6.1:75424420-75424439 MS.gene052453:intron 55.0%
ACCATTCCACCCTCCAGGTC+CGG + chr6.1:75425833-75425852 None:intergenic 60.0%
GCATCTTATGCCGGACCTGG+AGG - chr6.1:75425820-75425839 MS.gene052453:intron 60.0%
TGGGCATCTTATGCCGGACC+TGG - chr6.1:75425817-75425836 MS.gene052453:intron 60.0%
CTTATGCCGGACCTGGAGGG+TGG - chr6.1:75425824-75425843 MS.gene052453:intron 65.0%
GCCGGACCTGGAGGGTGGAA+TGG - chr6.1:75425829-75425848 MS.gene052453:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 75423916 75426921 75423916 ID=MS.gene052453
chr6.1 mRNA 75423916 75426921 75423916 ID=MS.gene052453.t1;Parent=MS.gene052453
chr6.1 exon 75426761 75426921 75426761 ID=MS.gene052453.t1.exon1;Parent=MS.gene052453.t1
chr6.1 CDS 75426761 75426921 75426761 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75426538 75426596 75426538 ID=MS.gene052453.t1.exon2;Parent=MS.gene052453.t1
chr6.1 CDS 75426538 75426596 75426538 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75426375 75426431 75426375 ID=MS.gene052453.t1.exon3;Parent=MS.gene052453.t1
chr6.1 CDS 75426375 75426431 75426375 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75426119 75426153 75426119 ID=MS.gene052453.t1.exon4;Parent=MS.gene052453.t1
chr6.1 CDS 75426119 75426153 75426119 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75425850 75425953 75425850 ID=MS.gene052453.t1.exon5;Parent=MS.gene052453.t1
chr6.1 CDS 75425850 75425953 75425850 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75425691 75425766 75425691 ID=MS.gene052453.t1.exon6;Parent=MS.gene052453.t1
chr6.1 CDS 75425691 75425766 75425691 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75425523 75425581 75425523 ID=MS.gene052453.t1.exon7;Parent=MS.gene052453.t1
chr6.1 CDS 75425523 75425581 75425523 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75425358 75425423 75425358 ID=MS.gene052453.t1.exon8;Parent=MS.gene052453.t1
chr6.1 CDS 75425358 75425423 75425358 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75425190 75425273 75425190 ID=MS.gene052453.t1.exon9;Parent=MS.gene052453.t1
chr6.1 CDS 75425190 75425273 75425190 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75424987 75425051 75424987 ID=MS.gene052453.t1.exon10;Parent=MS.gene052453.t1
chr6.1 CDS 75424987 75425051 75424987 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75424790 75424872 75424790 ID=MS.gene052453.t1.exon11;Parent=MS.gene052453.t1
chr6.1 CDS 75424790 75424872 75424790 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75424609 75424699 75424609 ID=MS.gene052453.t1.exon12;Parent=MS.gene052453.t1
chr6.1 CDS 75424609 75424699 75424609 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75424473 75424522 75424473 ID=MS.gene052453.t1.exon13;Parent=MS.gene052453.t1
chr6.1 CDS 75424473 75424522 75424473 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75424095 75424235 75424095 ID=MS.gene052453.t1.exon14;Parent=MS.gene052453.t1
chr6.1 CDS 75424095 75424235 75424095 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
chr6.1 exon 75423916 75424008 75423916 ID=MS.gene052453.t1.exon15;Parent=MS.gene052453.t1
chr6.1 CDS 75423916 75424008 75423916 ID=cds.MS.gene052453.t1;Parent=MS.gene052453.t1
Gene Sequence

>MS.gene052453

ATGGCTAGATTGATGGTGCTTGCATTTTGTATCCTCGTGTTGTTGAATATTATTGCAAGTGTTCCGTCATCTTCAGCTGCTCGATTATTAGGAAACAACAATGTAACCAAAATTAAGAGTTTTATGTTGCAAAATGGACTTGGTCAGACACCTCCCATGGGGTATGCTATACCCTCTTTATTTGTCATTCTCATCCATTGTTCATTCAAATTCAAATATATCCATTTTTTCTTTTATGATAATCACGTAAAAATACTCATAATTTTCTCCAATTAAATACATGAAAGTATATAGTTTCTTAATCAATTATATTCATGATGTTCAGATGGAATAGTTGGAACCATTTTGGTTGTGATATAAATGAAAGTTTAATCCGAGATACAGGTATATATGTTTATTATCATTATTATGATGTTCCCTAAGCTATTATTTTTACAGTTTAAATATATTTAATTCAATTGAAGTAAACAATATTGATTTATCATTTCAGCTGATGCGATGGTGTCAACTGGACTTGCTGCCCTAGGGTACAAGTATATCAATTTAGGTAGGTGGCAAGTGGCAACTACACCGATCATTGCTGCTACTATACTTACTCTTTATTTTGTTGATGAGTGAATATTTAGTTGATAATTTGTTAAAGTTTCTTGTAGAGATTTTTTTTAAATATTATTGTATTTTTTAATTATGTGTAAAATATTATATAGACATTTATTTATGTATGAAAATATATTTTAATAATATAAATTTGCATGTTTTTTTTTCCAGATGATTGTTGGGCAGAACTTAATCGAGACTCACAGGTATTTAATATATATCGTCTTTAAAAAAAATTCCATTGATTTGTATGTTTATTTTCTTCATGTACTTTTATGTGTCTATTTTTAAAAAAATATAGGTTAAGTGAATTTAAATTAATAGATTAATATATCATAGTGTTTATACCTCTGACAAGTTAAATATGTTAGGGAAATATGGTTCCCAAGGCTTCAACGTTTCCTTCAGGAATCAAGGCTCTAGCTCATTATATTCACAGGAAAGGCTTGAAGTTGGGAATTTATTCAGATGCCGGGTATCGACATATTAAATTTTATTTGATGATCATGAATATGATTGTTCAAGCATTATTTATGATCACTTACAATTGCTATGCAGAAATCAAACTTGTAGTAAACGTATGCCTGGATCACTAGGACATGAAATACAAGATGCCAAAACATTTGCTTCTTGGGTAAACCATATATACATACATTATTTGAAAATCATTTTTCACTTATCAACATTATATTCTATTTCTAATCTTATGTTGTTAACCAGTATTGGTTCAAATTTTTCTTTAGGGAGTCGACTATTTGAAGTATGATAATTGTGAAAATAATGGTATAAGCGTTAGAGAAAGGTATTTAATTTATTTTCTTCAAATGCAAATAGGTATATCAACATACTTAATATTTTGTAAAAGATAGTACTTACTAGTTTCATACGTTGTGTAAATCAGGTATCCACCAATGAGTGAAGCCCTATTAAAATCGGGAAGGTCGATCTTCTTCTCTATGTGTGAATGGTAAGCTGGATTGGTGATAATGTTTCTCATACATAATTGATATTTCATTTTCTATTTCATTCTAATTTCTTTTTTGAAACATAGGGGATGGGAAGATCCAGCAACATGGGCCAAAAGTGTTGGAAATAGTTGGAGAACAACAGGAGATATTGAAGATAATTGGAATAGGTAAAATTATTATGATAACTCACATTCTCACAGTTTACGTTGTTTCTTTTTGCGTAATAATTTAGCTCAGGAAAATAAATTTCAATTTTTTTCTTCATTTTCTTATATTATAACCAACTAACTTTATTCCATCACTAGCATGACTTCTATAATAGATGTAAACGACAAATGGGCATCTTATGCCGGACCTGGAGGGTGGAATGGTAATTAACTAACCTCACTAGTAATTTTATGAATCTTAAATTTAAGATCATTACAAGTATATCAAACTCCAATATATTAATTCCTCGTATGTGTCATTAATGTTTGAATATTAGATCCTGATATGCTCGAAGTTGGAAATGGAGGCATGACAACAGAGGAATATCGTGCCCATTTCAGCATTTGGGCATTAGCTAAGGTGCATGAAATAATTTTTATATACCTATTGTTGAGACAAAGTAATATGTCTTGAATTCGGTTTTTTAACTATTTTACTCGGTTTAAATAGGCCCCTTTATTAGTTGGTTGTAATATTCAAGCAATGGATAATATCACGTATGAATTGATAAGCAACTCTGAAGTTATTGCAGTAAACCAAGGTAAGTAGACTTTCTTGAAAGATAAATGTATTAATTTCTTCAATAAAGAATGCTTTGACACTTACATGTTTCTTGTGGTATTGCAGATAAACTTGGAGTTCAGGGAAAGAAAGTCAAAAGCAACAATGATTTAGAGGTGACATTATTATATTTCCCTTTATATGGTGTTTAAGTTTGATTCCTCACAACTTATAATGATACTAAATTTGTTTAACTCTCAAATCAATACATGGATCTAGAGCAGCCTGCGATAAATGCAAACTAATGCAACCTTATAATCAAATCATTTGTGTATTATATACGTACATATGCATGTGAATATTGTCTCATAGTTCTTACATACAACTTCTTACTAAAAATTCTATGGATATAGGTTTGGGCAGGTCCTCTCAATAATAACAAAGTAGCAGTGGTCTTATGGAATAGAAGTTCATCAAATGCAACAGTAACTGCATCCTGGTCAGATATAGGTCTGAAATCAGGAATTATAGTTGATGCAAGAGATTTATGGGAGGTAAGAGAGTTAGGCTCATTTTTCATTGTATTGTGTAAAACAATTTAAATTCATATGGTTTTGATGGTGTGTAATGATTTTTGCAGCACTCAACACAATCATTGGTTTCAGAAGAAATCTCTGCTGAGTTAGATTCACATGCCTGCAAGATGTATATTCTCACACCTAAAAGGAGTTAA

Protein sequence

>MS.gene052453.t1

MARLMVLAFCILVLLNIIASVPSSSAARLLGNNNVTKIKSFMLQNGLGQTPPMGWNSWNHFGCDINESLIRDTADAMVSTGLAALGYKYINLDDCWAELNRDSQGNMVPKASTFPSGIKALAHYIHRKGLKLGIYSDAGNQTCSKRMPGSLGHEIQDAKTFASWGVDYLKYDNCENNGISVRERYPPMSEALLKSGRSIFFSMCEWGWEDPATWAKSVGNSWRTTGDIEDNWNSMTSIIDVNDKWASYAGPGGWNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLVGCNIQAMDNITYELISNSEVIAVNQDKLGVQGKKVKSNNDLEVWAGPLNNNKVAVVLWNRSSSNATVTASWSDIGLKSGIIVDARDLWEHSTQSLVSEEISAELDSHACKMYILTPKRS