Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052890.t1 | XP_013466771.1 | 82.3 | 300 | 19 | 2 | 1 | 267 | 277 | 575 | 2.00E-132 | 481.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052890.t1 | A0A072VGA5 | 82.3 | 300 | 19 | 2 | 1 | 267 | 277 | 575 | 1.4e-132 | 481.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052855 | MS.gene052890 | 0.902665 | 7.69E-79 | -1.69E-46 |
| MS.gene052888 | MS.gene052890 | 0.907537 | 4.55E-81 | -1.69E-46 |
| MS.gene052889 | MS.gene052890 | 0.908606 | 1.42E-81 | -1.69E-46 |
| MS.gene052890 | MS.gene62676 | 0.802903 | 4.50E-49 | -1.69E-46 |
| MS.gene052890 | MS.gene62677 | 0.803022 | 4.25E-49 | -1.69E-46 |
| MS.gene052890 | MS.gene70154 | 0.803178 | 3.95E-49 | -1.69E-46 |
| MS.gene052890 | MS.gene71945 | 0.805337 | 1.40E-49 | -1.69E-46 |
| MS.gene052890 | MS.gene73678 | 0.810857 | 9.36E-51 | -1.69E-46 |
| MS.gene052890 | MS.gene94674 | 0.809981 | 1.45E-50 | -1.69E-46 |
| MS.gene052890 | MS.gene99894 | 0.817682 | 2.91E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTACCACTTCAAAAT+TGG | 0.141892 | 1.4:+20120532 | None:intergenic |
| TGCAGGTACAGTGTTGATTT+TGG | 0.235808 | 1.4:-20120419 | MS.gene052890:intron |
| ATGAAAGAAATGTGGTAAAA+TGG | 0.248386 | 1.4:-20120394 | MS.gene052890:CDS |
| GTAATAGTGGCAAGAGAATA+AGG | 0.303287 | 1.4:+20121719 | None:intergenic |
| TCAGCAAAAGTGAAGAATTT+AGG | 0.316081 | 1.4:-20122795 | MS.gene052890:CDS |
| TCTGATTTCCAGTATTTGAT+TGG | 0.336556 | 1.4:-20121749 | MS.gene052890:CDS |
| AAGGGCTTGACTAAGGAATA+AGG | 0.386116 | 1.4:+20121665 | None:intergenic |
| ATGAATCCTTTGATTCACTT+TGG | 0.386588 | 1.4:-20120699 | MS.gene052890:CDS |
| AGTCTTATGCTTCTGAAGAT+AGG | 0.396481 | 1.4:-20122840 | MS.gene052890:CDS |
| GATTCACTTTGGACTTGTAA+TGG | 0.405936 | 1.4:-20120688 | MS.gene052890:CDS |
| GAGGATACCATTTGTAATAG+TGG | 0.409546 | 1.4:+20121706 | None:intergenic |
| CTTCTGTCATTTGTGCCAAA+GGG | 0.419712 | 1.4:+20121647 | None:intergenic |
| TGCAACTAGAGAGTTCTTAG+AGG | 0.440255 | 1.4:-20120602 | MS.gene052890:CDS |
| GTGCAGCTGCAGTCTGTGAT+AGG | 0.443467 | 1.4:-20122891 | MS.gene052890:CDS |
| GTCAAGAAGGTGTAATCAAT+AGG | 0.445472 | 1.4:-20121781 | MS.gene052890:CDS |
| TCAAAATTGGAGTGAGATGA+AGG | 0.447979 | 1.4:+20120545 | None:intergenic |
| CCATGGTTATGTTCATCATA+AGG | 0.457442 | 1.4:-20124818 | MS.gene052890:intron |
| TATTCCTTAGTCAAGCCCTT+TGG | 0.459648 | 1.4:-20121662 | MS.gene052890:CDS |
| TTGACACATCTCTTAGCTGA+TGG | 0.460150 | 1.4:-20120334 | None:intergenic |
| AGAAGCATAAGACTCAAGTA+TGG | 0.463463 | 1.4:+20122849 | None:intergenic |
| CCTTCTGTCATTTGTGCCAA+AGG | 0.463764 | 1.4:+20121646 | None:intergenic |
| TCTCTTGCCACTATTACAAA+TGG | 0.468074 | 1.4:-20121713 | MS.gene052890:CDS |
| GATTTCCAGTATTTGATTGG+AGG | 0.471100 | 1.4:-20121746 | MS.gene052890:CDS |
| TGTGCCAAAGGGCTTGACTA+AGG | 0.473650 | 1.4:+20121658 | None:intergenic |
| GATGTCCTCCAATCAAATAC+TGG | 0.481014 | 1.4:+20121741 | None:intergenic |
| AATGCTTAGGCTGTTGAGGT+TGG | 0.495478 | 1.4:-20123146 | MS.gene052890:intron |
| GTGATCTTCGATTGCTTCTG+AGG | 0.509976 | 1.4:+20121687 | None:intergenic |
| AGAGAGTTCTTAGAGGATGA+TGG | 0.517425 | 1.4:-20120595 | MS.gene052890:CDS |
| CAGCTAAGAGATGTGTCAAA+AGG | 0.523191 | 1.4:+20120338 | None:intergenic |
| AACAAATGCTTAGGCTGTTG+AGG | 0.523405 | 1.4:-20123150 | MS.gene052890:intron |
| AACTCTTCAGCAACTCTACA+AGG | 0.523810 | 1.4:+20120631 | None:intergenic |
| CAGCTTCTTGTGAGAAACCA+TGG | 0.530025 | 1.4:-20124835 | MS.gene052890:CDS |
| TACTTGGATGCAAATAAAGC+TGG | 0.530965 | 1.4:-20120362 | MS.gene052890:CDS |
| TAGGAGACATGTTGATTATG+TGG | 0.538664 | 1.4:-20122821 | MS.gene052890:CDS |
| ACAAGTCCAAAGTGAATCAA+AGG | 0.548188 | 1.4:+20120693 | None:intergenic |
| CTTAAACTTGTACAATGCCA+TGG | 0.555357 | 1.4:-20121831 | MS.gene052890:CDS |
| ATCCTACTCTTATCATAGCA+TGG | 0.563711 | 1.4:+20121804 | None:intergenic |
| GATGAAGGGTCCTCTTCTCT+AGG | 0.574774 | 1.4:+20120560 | None:intergenic |
| TTTCTTACCCGAAAACAGGA+TGG | 0.586581 | 1.4:+20123096 | None:intergenic |
| CAAATACTGGAAATCAGAGA+AGG | 0.589193 | 1.4:+20121754 | None:intergenic |
| AAAATGGATAATGAATTACT+TGG | 0.594459 | 1.4:-20120378 | MS.gene052890:CDS |
| GCAAAAGTGAAGAATTTAGG+AGG | 0.612288 | 1.4:-20122792 | MS.gene052890:intron |
| CATGACGCAGGATCTGCAGC+GGG | 0.615533 | 1.4:-20121897 | MS.gene052890:CDS |
| CCTTATGATGAACATAACCA+TGG | 0.624909 | 1.4:+20124818 | None:intergenic |
| ATAAGAGTAGGATGTCAAGA+AGG | 0.626225 | 1.4:-20121794 | MS.gene052890:CDS |
| ATCCATGCTATGATAAGAGT+AGG | 0.628623 | 1.4:-20121806 | MS.gene052890:CDS |
| TTGAAGTTGACCTAGAGAAG+AGG | 0.632403 | 1.4:-20120570 | MS.gene052890:CDS |
| CAAAATTGGAGTGAGATGAA+GGG | 0.633095 | 1.4:+20120546 | None:intergenic |
| CCTTTGGCACAAATGACAGA+AGG | 0.637419 | 1.4:-20121646 | MS.gene052890:CDS |
| CACAAATGACAGAAGGCTAG+AGG | 0.644355 | 1.4:-20121639 | MS.gene052890:CDS |
| TATCATAGCATGGATGACCA+TGG | 0.646877 | 1.4:+20121814 | None:intergenic |
| CTAAATCAAGCCCAAAAGTG+AGG | 0.651929 | 1.4:-20120663 | MS.gene052890:CDS |
| CAGGTATGTAAACATGACGC+AGG | 0.659327 | 1.4:-20121909 | MS.gene052890:CDS |
| ACATGACGCAGGATCTGCAG+CGG | 0.677376 | 1.4:-20121898 | MS.gene052890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTTTTTTTTTTTT+TGG | - | chr1.4:20120452-20120471 | MS.gene052890:intron | 0.0% |
| !! | CTAATTCTATAAAAAATTAT+AGG | - | chr1.4:20120685-20120704 | MS.gene052890:CDS | 10.0% |
| !! | TATTCAAATTGAATAAATAT+AGG | + | chr1.4:20121560-20121579 | None:intergenic | 10.0% |
| !!! | TACATTTTTAAAAAGTAAAA+GGG | + | chr1.4:20123679-20123698 | None:intergenic | 10.0% |
| !!! | TTACATTTTTAAAAAGTAAA+AGG | + | chr1.4:20123680-20123699 | None:intergenic | 10.0% |
| !!! | TTTTCTTGAAAAAAAAAAAT+AGG | - | chr1.4:20121135-20121154 | MS.gene052890:intron | 10.0% |
| !! | CTATTACTTAAAAAACATAT+TGG | + | chr1.4:20122138-20122157 | None:intergenic | 15.0% |
| !! | TAAAAGAAATATTTAATGGA+CGG | - | chr1.4:20120630-20120649 | MS.gene052890:CDS | 15.0% |
| !! | TAGTAATTTATATTATTTGC+AGG | - | chr1.4:20124746-20124765 | MS.gene052890:intron | 15.0% |
| !!! | AAAATAATATTTGACTGTTT+TGG | - | chr1.4:20120556-20120575 | MS.gene052890:CDS | 15.0% |
| !!! | AACACTAGTTTAATTTTATT+TGG | + | chr1.4:20123986-20124005 | None:intergenic | 15.0% |
| !!! | AATGTAATAATTTTTTTCCT+TGG | - | chr1.4:20123693-20123712 | MS.gene052890:intron | 15.0% |
| !!! | ATTTTCTTTAAAAAGAATAG+AGG | + | chr1.4:20123062-20123081 | None:intergenic | 15.0% |
| !!! | TGTGTTTCAATATTAAATTT+TGG | - | chr1.4:20123574-20123593 | MS.gene052890:intron | 15.0% |
| !!! | TTTGTTGTTTTTGTTTTTTT+TGG | - | chr1.4:20120426-20120445 | MS.gene052890:intron | 15.0% |
| !!! | TTTTTTTTCAAGAAAAGAAA+AGG | + | chr1.4:20121131-20121150 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTGGTACAA+TGG | - | chr1.4:20120460-20120479 | MS.gene052890:intron | 15.0% |
| !! | AAAAAATATAAGTTGCAAAC+TGG | + | chr1.4:20122941-20122960 | None:intergenic | 20.0% |
| !! | AAAATGGATAATGAATTACT+TGG | - | chr1.4:20124804-20124823 | MS.gene052890:intron | 20.0% |
| !! | AATGAAAAAACATGTTTGAA+GGG | - | chr1.4:20123818-20123837 | MS.gene052890:intron | 20.0% |
| !! | ATAGTAATGAAAAAGTTCAA+AGG | - | chr1.4:20120579-20120598 | MS.gene052890:CDS | 20.0% |
| !! | ATGAATATACGAAAAACAAA+AGG | + | chr1.4:20124291-20124310 | None:intergenic | 20.0% |
| !! | ATTATATAATACATGTCGAA+AGG | + | chr1.4:20123148-20123167 | None:intergenic | 20.0% |
| !! | CATTCAATAAATAATGTATG+TGG | + | chr1.4:20120856-20120875 | None:intergenic | 20.0% |
| !! | CTTAAAAATTCAATGCAAAT+TGG | + | chr1.4:20121315-20121334 | None:intergenic | 20.0% |
| !! | TAACTAAAATTCTAGATTCT+AGG | + | chr1.4:20123723-20123742 | None:intergenic | 20.0% |
| !! | TAATGAAAAAACATGTTTGA+AGG | - | chr1.4:20123817-20123836 | MS.gene052890:intron | 20.0% |
| !! | TACAAGAAGAAAATTAATCA+AGG | + | chr1.4:20122162-20122181 | None:intergenic | 20.0% |
| !! | TCAATCAAACATATATCAAT+TGG | + | chr1.4:20120996-20121015 | None:intergenic | 20.0% |
| !! | TGAATATACGAAAAACAAAA+GGG | + | chr1.4:20124290-20124309 | None:intergenic | 20.0% |
| !! | TTATATAATACATGTCGAAA+GGG | + | chr1.4:20123147-20123166 | None:intergenic | 20.0% |
| !!! | AAAAGAAAAGGCTAAAATTT+TGG | + | chr1.4:20121119-20121138 | None:intergenic | 20.0% |
| !!! | ATAAATGTTTTCCATTTTCA+AGG | + | chr1.4:20121197-20121216 | None:intergenic | 20.0% |
| !!! | GAGTATTTTTTAACAATCTT+AGG | - | chr1.4:20120917-20120936 | MS.gene052890:intron | 20.0% |
| !!! | TGATTAATTTTCTTCTTGTA+GGG | - | chr1.4:20122162-20122181 | MS.gene052890:intron | 20.0% |
| !!! | TTGAAACATTTTGAGATAAA+CGG | + | chr1.4:20122237-20122256 | None:intergenic | 20.0% |
| !!! | TTGATTAATTTTCTTCTTGT+AGG | - | chr1.4:20122161-20122180 | MS.gene052890:intron | 20.0% |
| !!! | TTTTAGTTGACATTTTGATT+TGG | - | chr1.4:20120506-20120525 | MS.gene052890:intron | 20.0% |
| !!! | TTTTTTGGTAATCAAGTTAT+TGG | + | chr1.4:20123915-20123934 | None:intergenic | 20.0% |
| ! | AAAGAAAATTTGATTGAGTG+AGG | - | chr1.4:20121023-20121042 | MS.gene052890:intron | 25.0% |
| ! | AAATAGTTATCGCACTTTAT+GGG | + | chr1.4:20124372-20124391 | None:intergenic | 25.0% |
| ! | AAATCACAAAAACTTTGCAT+TGG | - | chr1.4:20121696-20121715 | MS.gene052890:CDS | 25.0% |
| ! | AATCTTTCTCAAAATCCTTA+GGG | + | chr1.4:20123625-20123644 | None:intergenic | 25.0% |
| ! | ACATGTTAAGATACATGTTA+AGG | + | chr1.4:20121093-20121112 | None:intergenic | 25.0% |
| ! | ATGAAAAAACATGTTTGAAG+GGG | - | chr1.4:20123819-20123838 | MS.gene052890:intron | 25.0% |
| ! | ATGAAAGAAATGTGGTAAAA+TGG | - | chr1.4:20124788-20124807 | MS.gene052890:intron | 25.0% |
| ! | CAAGTTAGAACTAACATATA+AGG | + | chr1.4:20122613-20122632 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr1.4:20120817-20120836 | MS.gene052890:intron | 25.0% |
| ! | CTTAATTACCACTTCAAAAT+TGG | + | chr1.4:20124653-20124672 | None:intergenic | 25.0% |
| ! | GGTCAATTATAGTAATTCAA+GGG | + | chr1.4:20123965-20123984 | None:intergenic | 25.0% |
| ! | GTAAATCTTATTGTCTATCA+CGG | - | chr1.4:20122420-20122439 | MS.gene052890:intron | 25.0% |
| ! | GTATATTCATTCTATTGAAC+CGG | - | chr1.4:20124301-20124320 | MS.gene052890:intron | 25.0% |
| ! | TAACTTGATTACCAAAAAAC+AGG | - | chr1.4:20123916-20123935 | MS.gene052890:intron | 25.0% |
| ! | TAATTGCATGAAGCTAAATT+TGG | + | chr1.4:20122834-20122853 | None:intergenic | 25.0% |
| ! | TCGTTAGAGAAACATAATTT+AGG | + | chr1.4:20121981-20122000 | None:intergenic | 25.0% |
| ! | TCTCAAAATGTTTCAATTTC+CGG | - | chr1.4:20122241-20122260 | MS.gene052890:intron | 25.0% |
| ! | TGGTCAATTATAGTAATTCA+AGG | + | chr1.4:20123966-20123985 | None:intergenic | 25.0% |
| ! | TTGTTAAAAAATACTCTCTC+CGG | + | chr1.4:20120913-20120932 | None:intergenic | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | - | chr1.4:20120891-20120910 | MS.gene052890:intron | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | + | chr1.4:20120910-20120891 | None:intergenic | 25.0% |
| !! | ACATTCTGCTATTGATAATA+TGG | - | chr1.4:20124403-20124422 | MS.gene052890:intron | 25.0% |
| !! | ATTTCATTCAAGTTTAGCTT+AGG | + | chr1.4:20123192-20123211 | None:intergenic | 25.0% |
| !! | GTGAGTCAACTAAAATTTTA+GGG | + | chr1.4:20123943-20123962 | None:intergenic | 25.0% |
| !! | TTTTTGCTAATGTGTAAAGT+AGG | + | chr1.4:20120657-20120676 | None:intergenic | 25.0% |
| !!! | AAAGTGATTTTTCAAAATGC+AGG | - | chr1.4:20123254-20123273 | MS.gene052890:intron | 25.0% |
| !!! | AATGTTTTTAAGTGTGTGAT+TGG | + | chr1.4:20121762-20121781 | None:intergenic | 25.0% |
| !!! | ATTTTGTTACTTCTGATATG+AGG | - | chr1.4:20123216-20123235 | MS.gene052890:intron | 25.0% |
| !!! | GTAATAATTTTTTTCCTTGG+TGG | - | chr1.4:20123696-20123715 | MS.gene052890:intron | 25.0% |
| !!! | TTTTGGAAATGAAAGAAATG+TGG | - | chr1.4:20124780-20124799 | MS.gene052890:intron | 25.0% |
| AAAGAAATGCAGAGAATAAC+AGG | - | chr1.4:20122683-20122702 | MS.gene052890:intron | 30.0% | |
| AAATCTCAGACCTTACTTAA+GGG | + | chr1.4:20123787-20123806 | None:intergenic | 30.0% | |
| AAGAAAATACCTGAATTTGC+CGG | - | chr1.4:20123074-20123093 | MS.gene052890:intron | 30.0% | |
| AATGTGGATGAATGAAATGA+AGG | - | chr1.4:20122564-20122583 | MS.gene052890:intron | 30.0% | |
| AGGTTTCAAAAGTAGGTTAT+AGG | + | chr1.4:20123123-20123142 | None:intergenic | 30.0% | |
| ATCTCCATCAAAAAATTGTG+AGG | + | chr1.4:20121066-20121085 | None:intergenic | 30.0% | |
| ATGAATCCTTTGATTCACTT+TGG | - | chr1.4:20124483-20124502 | MS.gene052890:intron | 30.0% | |
| ATGTGGATGAATGAAATGAA+GGG | - | chr1.4:20122565-20122584 | MS.gene052890:intron | 30.0% | |
| CAATCTTTCTCAAAATCCTT+AGG | + | chr1.4:20123626-20123645 | None:intergenic | 30.0% | |
| CACATGACATATGTTACATT+TGG | + | chr1.4:20120956-20120975 | None:intergenic | 30.0% | |
| CTCAAAATGTTTCAATTTCC+GGG | - | chr1.4:20122242-20122261 | MS.gene052890:intron | 30.0% | |
| GAAATAGTTATCGCACTTTA+TGG | + | chr1.4:20124373-20124392 | None:intergenic | 30.0% | |
| GTCACAGAATTTAATGTGTT+CGG | - | chr1.4:20121800-20121819 | MS.gene052890:CDS | 30.0% | |
| GTTGTCACATTCATTATTGA+CGG | - | chr1.4:20121833-20121852 | MS.gene052890:CDS | 30.0% | |
| TCAACTCACAGAAAATTTGA+AGG | + | chr1.4:20124012-20124031 | None:intergenic | 30.0% | |
| TCAGCAAAAGTGAAGAATTT+AGG | - | chr1.4:20122387-20122406 | MS.gene052890:intron | 30.0% | |
| TCATTCCAAAACAAATGCTT+AGG | - | chr1.4:20122023-20122042 | MS.gene052890:intron | 30.0% | |
| TCTGATTTCCAGTATTTGAT+TGG | - | chr1.4:20123433-20123452 | MS.gene052890:intron | 30.0% | |
| TTCAAGGGAATGTTATAATC+TGG | - | chr1.4:20124132-20124151 | MS.gene052890:intron | 30.0% | |
| TTGTCACATTCATTATTGAC+GGG | - | chr1.4:20121834-20121853 | MS.gene052890:CDS | 30.0% | |
| TTTCATTCATCCACATTTCT+CGG | + | chr1.4:20122561-20122580 | None:intergenic | 30.0% | |
| ! | AAACTTTGCATTGGTAATCT+CGG | - | chr1.4:20121705-20121724 | MS.gene052890:CDS | 30.0% |
| ! | AACATATTGGTAGCTTTCTT+TGG | + | chr1.4:20122125-20122144 | None:intergenic | 30.0% |
| ! | GGTGAGTCAACTAAAATTTT+AGG | + | chr1.4:20123944-20123963 | None:intergenic | 30.0% |
| ! | TTATTTTCTTACCCGAAAAC+AGG | + | chr1.4:20122093-20122112 | None:intergenic | 30.0% |
| ! | TTTTCTTCTTGTAGGGAAAA+TGG | - | chr1.4:20122169-20122188 | MS.gene052890:intron | 30.0% |
| !! | AAATTCTTCACTTTTGCTGA+TGG | + | chr1.4:20122387-20122406 | None:intergenic | 30.0% |
| !! | GTGAAAAAAACCTCACTTTT+GGG | + | chr1.4:20124532-20124551 | None:intergenic | 30.0% |
| !! | TTTTAGTTACCAACGTTACA+TGG | - | chr1.4:20123734-20123753 | MS.gene052890:intron | 30.0% |
| !!! | AATTTTAGGGTCCTGTTTTT+TGG | + | chr1.4:20123930-20123949 | None:intergenic | 30.0% |
| AAAGGGAAATACACGATGTT+TGG | + | chr1.4:20124273-20124292 | None:intergenic | 35.0% | |
| AAAGGGAAGGTTTCAAAAGT+AGG | + | chr1.4:20123130-20123149 | None:intergenic | 35.0% | |
| AAGAAATTAACTACTCCCTC+CGG | - | chr1.4:20120760-20120779 | MS.gene052890:intron | 35.0% | |
| AAGAACCTTATTGCTGATAC+CGG | + | chr1.4:20123096-20123115 | None:intergenic | 35.0% | |
| AATTGGACCAAATCCATTGT+TGG | + | chr1.4:20120979-20120998 | None:intergenic | 35.0% | |
| ACAAGTCCAAAGTGAATCAA+AGG | + | chr1.4:20124492-20124511 | None:intergenic | 35.0% | |
| AGATAAACGGTTCATGTTCA+AGG | + | chr1.4:20122224-20122243 | None:intergenic | 35.0% | |
| AGGGAATGTTATAATCTGGA+CGG | - | chr1.4:20124136-20124155 | MS.gene052890:intron | 35.0% | |
| AGTGAAGAATTTAGGAGGTA+TGG | - | chr1.4:20122395-20122414 | MS.gene052890:intron | 35.0% | |
| ATAAGAGTAGGATGTCAAGA+AGG | - | chr1.4:20123388-20123407 | MS.gene052890:intron | 35.0% | |
| ATAATACATGTCGAAAGGGA+AGG | + | chr1.4:20123143-20123162 | None:intergenic | 35.0% | |
| ATCCATGCTATGATAAGAGT+AGG | - | chr1.4:20123376-20123395 | MS.gene052890:intron | 35.0% | |
| ATCCTACTCTTATCATAGCA+TGG | + | chr1.4:20123381-20123400 | None:intergenic | 35.0% | |
| CAAAATTGGAGTGAGATGAA+GGG | + | chr1.4:20124639-20124658 | None:intergenic | 35.0% | |
| CAAACTACCTATATGAGCTA+TGG | + | chr1.4:20122747-20122766 | None:intergenic | 35.0% | |
| CAAATACTGGAAATCAGAGA+AGG | + | chr1.4:20123431-20123450 | None:intergenic | 35.0% | |
| CAAATCTCAGACCTTACTTA+AGG | + | chr1.4:20123788-20123807 | None:intergenic | 35.0% | |
| CCATGGTTATGTTCATCATA+AGG | - | chr1.4:20120364-20120383 | MS.gene052890:CDS | 35.0% | |
| CCTTATGATGAACATAACCA+TGG | + | chr1.4:20120367-20120386 | None:intergenic | 35.0% | |
| CGTGTAGTGAAAACTAAGAT+TGG | + | chr1.4:20122987-20123006 | None:intergenic | 35.0% | |
| CTAATCTCTGTCAGAAAACA+TGG | + | chr1.4:20123867-20123886 | None:intergenic | 35.0% | |
| CTTAAACTTGTACAATGCCA+TGG | - | chr1.4:20123351-20123370 | MS.gene052890:intron | 35.0% | |
| GAGGATACCATTTGTAATAG+TGG | + | chr1.4:20123479-20123498 | None:intergenic | 35.0% | |
| GATTCACTTTGGACTTGTAA+TGG | - | chr1.4:20124494-20124513 | MS.gene052890:intron | 35.0% | |
| GATTTCCAGTATTTGATTGG+AGG | - | chr1.4:20123436-20123455 | MS.gene052890:intron | 35.0% | |
| GCAAAAGTGAAGAATTTAGG+AGG | - | chr1.4:20122390-20122409 | MS.gene052890:intron | 35.0% | |
| GCTATGTATAGAACATGTCA+AGG | - | chr1.4:20122645-20122664 | MS.gene052890:intron | 35.0% | |
| GGACTTAAATCCCTTAAGTA+AGG | - | chr1.4:20123774-20123793 | MS.gene052890:intron | 35.0% | |
| GTAATAGTGGCAAGAGAATA+AGG | + | chr1.4:20123466-20123485 | None:intergenic | 35.0% | |
| TACTTGGATGCAAATAAAGC+TGG | - | chr1.4:20124820-20124839 | MS.gene052890:CDS | 35.0% | |
| TATGGACATTGAATACGAGA+CGG | + | chr1.4:20122516-20122535 | None:intergenic | 35.0% | |
| TCAAAATTGGAGTGAGATGA+AGG | + | chr1.4:20124640-20124659 | None:intergenic | 35.0% | |
| TCTCTTGCCACTATTACAAA+TGG | - | chr1.4:20123469-20123488 | MS.gene052890:intron | 35.0% | |
| TGTCACATTCATTATTGACG+GGG | - | chr1.4:20121835-20121854 | MS.gene052890:CDS | 35.0% | |
| TTACACGTTAGTGTCACATA+CGG | - | chr1.4:20122882-20122901 | MS.gene052890:CDS | 35.0% | |
| ! | AACAGCCTAAGCATTTGTTT+TGG | + | chr1.4:20122031-20122050 | None:intergenic | 35.0% |
| ! | ACATTTGTTGCCTTATGAGT+CGG | - | chr1.4:20123599-20123618 | MS.gene052890:intron | 35.0% |
| ! | AGAAGCATAAGACTCAAGTA+TGG | + | chr1.4:20122336-20122355 | None:intergenic | 35.0% |
| ! | AGATAGTGACTTGTGTTTCA+AGG | + | chr1.4:20122793-20122812 | None:intergenic | 35.0% |
| ! | AGTCTTATGCTTCTGAAGAT+AGG | - | chr1.4:20122342-20122361 | MS.gene052890:intron | 35.0% |
| ! | CGATGTTTGGTAACAAAGTT+TGG | + | chr1.4:20124260-20124279 | None:intergenic | 35.0% |
| ! | GGTGAAAAAAACCTCACTTT+TGG | + | chr1.4:20124533-20124552 | None:intergenic | 35.0% |
| ! | GTCAAGAAGGTGTAATCAAT+AGG | - | chr1.4:20123401-20123420 | MS.gene052890:intron | 35.0% |
| ! | TAGGAGACATGTTGATTATG+TGG | - | chr1.4:20122361-20122380 | MS.gene052890:intron | 35.0% |
| !! | ATCTCACTCCAATTTTGAAG+TGG | - | chr1.4:20124642-20124661 | MS.gene052890:intron | 35.0% |
| !! | GGGGAATGAATGTTTGATTT+TGG | - | chr1.4:20123010-20123029 | MS.gene052890:intron | 35.0% |
| !! | TTAGTTTTCACTACACGACT+GGG | - | chr1.4:20122990-20123009 | MS.gene052890:intron | 35.0% |
| !! | TTGTAGGGAAAATGGTTTTG+AGG | - | chr1.4:20122177-20122196 | MS.gene052890:intron | 35.0% |
| !!! | TGTGCCTCACAATTTTTTGA+TGG | - | chr1.4:20121059-20121078 | MS.gene052890:intron | 35.0% |
| AACAAATGCTTAGGCTGTTG+AGG | - | chr1.4:20122032-20122051 | MS.gene052890:intron | 40.0% | |
| AACTCTTCAGCAACTCTACA+AGG | + | chr1.4:20124554-20124573 | None:intergenic | 40.0% | |
| AAGGGCTTGACTAAGGAATA+AGG | + | chr1.4:20123520-20123539 | None:intergenic | 40.0% | |
| ACAAGCTGACACCTTGAAAA+TGG | - | chr1.4:20121183-20121202 | MS.gene052890:intron | 40.0% | |
| ACTGTCATAACTGCTAGTGA+TGG | - | chr1.4:20122713-20122732 | MS.gene052890:intron | 40.0% | |
| AGAGAGTTCTTAGAGGATGA+TGG | - | chr1.4:20124587-20124606 | MS.gene052890:intron | 40.0% | |
| AGTTACCAACGTTACATGGT+CGG | - | chr1.4:20123738-20123757 | MS.gene052890:intron | 40.0% | |
| ATTTGCCGGTATCAGCAATA+AGG | - | chr1.4:20123088-20123107 | MS.gene052890:intron | 40.0% | |
| CACTAGCAGTTATGACAGTT+AGG | + | chr1.4:20122712-20122731 | None:intergenic | 40.0% | |
| CAGCTAAGAGATGTGTCAAA+AGG | + | chr1.4:20124847-20124866 | None:intergenic | 40.0% | |
| CATATGTCATGTGCCAACAA+TGG | - | chr1.4:20120963-20120982 | MS.gene052890:intron | 40.0% | |
| CTAAATCAAGCCCAAAAGTG+AGG | - | chr1.4:20124519-20124538 | MS.gene052890:intron | 40.0% | |
| GATAAGGTAGAAGTTCCGTT+TGG | - | chr1.4:20121663-20121682 | MS.gene052890:CDS | 40.0% | |
| GATGTCCTCCAATCAAATAC+TGG | + | chr1.4:20123444-20123463 | None:intergenic | 40.0% | |
| GATTTCAAGAAGCGACCAAA+CGG | + | chr1.4:20121681-20121700 | None:intergenic | 40.0% | |
| GCATGAAGCTAAATTTGGCA+TGG | + | chr1.4:20122829-20122848 | None:intergenic | 40.0% | |
| GGTATCAGCAATAAGGTTCT+TGG | - | chr1.4:20123095-20123114 | MS.gene052890:intron | 40.0% | |
| GTCACAACTCAACAAACGTT+CGG | + | chr1.4:20124069-20124088 | None:intergenic | 40.0% | |
| TATCATAGCATGGATGACCA+TGG | + | chr1.4:20123371-20123390 | None:intergenic | 40.0% | |
| TATTCCTTAGTCAAGCCCTT+TGG | - | chr1.4:20123520-20123539 | MS.gene052890:intron | 40.0% | |
| TCACAACTCAACAAACGTTC+GGG | + | chr1.4:20124068-20124087 | None:intergenic | 40.0% | |
| TCACTATCATTTGTAGCACC+CGG | + | chr1.4:20122263-20122282 | None:intergenic | 40.0% | |
| TGAAGGGGAAATTCCACAAT+AGG | - | chr1.4:20123834-20123853 | MS.gene052890:intron | 40.0% | |
| TGCAACTAGAGAGTTCTTAG+AGG | - | chr1.4:20124580-20124599 | MS.gene052890:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr1.4:20120914-20120895 | None:intergenic | 40.0% | |
| TTCAATGTCCATATCTGTGC+TGG | - | chr1.4:20122523-20122542 | MS.gene052890:intron | 40.0% | |
| TTGAAGTTGACCTAGAGAAG+AGG | - | chr1.4:20124612-20124631 | MS.gene052890:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr1.4:20120913-20120894 | None:intergenic | 40.0% | |
| TTTCTTACCCGAAAACAGGA+TGG | + | chr1.4:20122089-20122108 | None:intergenic | 40.0% | |
| ! | ACGTTTGTTGAGTTGTGACT+TGG | - | chr1.4:20124070-20124089 | MS.gene052890:intron | 40.0% |
| ! | ACTTCATCCATCCTGTTTTC+GGG | - | chr1.4:20122079-20122098 | MS.gene052890:intron | 40.0% |
| ! | CACTTCATCCATCCTGTTTT+CGG | - | chr1.4:20122078-20122097 | MS.gene052890:intron | 40.0% |
| ! | CGTTTGTTGAGTTGTGACTT+GGG | - | chr1.4:20124071-20124090 | MS.gene052890:intron | 40.0% |
| ! | CTTCTGTCATTTGTGCCAAA+GGG | + | chr1.4:20123538-20123557 | None:intergenic | 40.0% |
| ! | GTTTGTTGAGTTGTGACTTG+GGG | - | chr1.4:20124072-20124091 | MS.gene052890:intron | 40.0% |
| ! | TAGTTTTCACTACACGACTG+GGG | - | chr1.4:20122991-20123010 | MS.gene052890:intron | 40.0% |
| ! | TCATGTGCCAACAATGGATT+TGG | - | chr1.4:20120969-20120988 | MS.gene052890:intron | 40.0% |
| !! | CTTAGTTTTCACTACACGAC+TGG | - | chr1.4:20122989-20123008 | MS.gene052890:intron | 40.0% |
| !! | TGTGTGATTGGTTGCACTTT+TGG | + | chr1.4:20121750-20121769 | None:intergenic | 40.0% |
| !!! | TAGGGAAAATGGTTTTGAGG+AGG | - | chr1.4:20122180-20122199 | MS.gene052890:intron | 40.0% |
| !!! | TGCAGGTACAGTGTTGATTT+TGG | - | chr1.4:20124763-20124782 | MS.gene052890:intron | 40.0% |
| AACCCAGATGAACGGTTCAA+GGG | - | chr1.4:20124117-20124136 | MS.gene052890:intron | 45.0% | |
| AATGCTTAGGCTGTTGAGGT+TGG | - | chr1.4:20122036-20122055 | MS.gene052890:intron | 45.0% | |
| ACGGCGAGATTTCGTTGATA+AGG | - | chr1.4:20121647-20121666 | MS.gene052890:CDS | 45.0% | |
| AGGGGAAATTCCACAATAGG+TGG | - | chr1.4:20123837-20123856 | MS.gene052890:intron | 45.0% | |
| AGTAAAAGGGTCATGCATGC+AGG | + | chr1.4:20123666-20123685 | None:intergenic | 45.0% | |
| ATGGTCGGTCTTACTAGAAC+TGG | - | chr1.4:20123753-20123772 | MS.gene052890:intron | 45.0% | |
| ATGTCAAGGTGCACGATACA+AGG | - | chr1.4:20122659-20122678 | MS.gene052890:intron | 45.0% | |
| ATTCCCTTGAACCGTTCATC+TGG | + | chr1.4:20124123-20124142 | None:intergenic | 45.0% | |
| CACAAATGACAGAAGGCTAG+AGG | - | chr1.4:20123543-20123562 | MS.gene052890:intron | 45.0% | |
| CAGCTTCTTGTGAGAAACCA+TGG | - | chr1.4:20120347-20120366 | MS.gene052890:CDS | 45.0% | |
| CAGGTATGTAAACATGACGC+AGG | - | chr1.4:20123273-20123292 | MS.gene052890:intron | 45.0% | |
| CCTTTGGCACAAATGACAGA+AGG | - | chr1.4:20123536-20123555 | MS.gene052890:intron | 45.0% | |
| GTGATCTTCGATTGCTTCTG+AGG | + | chr1.4:20123498-20123517 | None:intergenic | 45.0% | |
| GTGGAAATGCGGAAATCTCA+CGG | + | chr1.4:20121621-20121640 | None:intergenic | 45.0% | |
| TAAGACCGACCATGTAACGT+TGG | + | chr1.4:20123746-20123765 | None:intergenic | 45.0% | |
| TCCGCATTTCCACAGAATCA+CGG | - | chr1.4:20121628-20121647 | MS.gene052890:intron | 45.0% | |
| TCTAGATTCTAGGTCCACCA+AGG | + | chr1.4:20123713-20123732 | None:intergenic | 45.0% | |
| TTCCCTTGAACCGTTCATCT+GGG | + | chr1.4:20124122-20124141 | None:intergenic | 45.0% | |
| TTGAACCGTTCATCTGGGTT+GGG | + | chr1.4:20124117-20124136 | None:intergenic | 45.0% | |
| TTGCTGATACCGGCAAATTC+AGG | + | chr1.4:20123086-20123105 | None:intergenic | 45.0% | |
| ! | CATAACTGCTAGTGATGGTG+TGG | - | chr1.4:20122718-20122737 | MS.gene052890:intron | 45.0% |
| ! | CCTTCTGTCATTTGTGCCAA+AGG | + | chr1.4:20123539-20123558 | None:intergenic | 45.0% |
| !! | CTTGGTTCTACCGAGAAATG+TGG | - | chr1.4:20122548-20122567 | MS.gene052890:intron | 45.0% |
| !! | GTGATTGGTTGCACTTTTGG+TGG | + | chr1.4:20121747-20121766 | None:intergenic | 45.0% |
| !! | AATTTAAAAGAAATATTTAA+TGG | - | chr1.4:20120626-20120645 | MS.gene052890:CDS | 5.0% |
| ACAAGCCCAACCCAGATGAA+CGG | - | chr1.4:20124109-20124128 | MS.gene052890:intron | 50.0% | |
| ACATGGCTGACCACCTATTG+TGG | + | chr1.4:20123850-20123869 | None:intergenic | 50.0% | |
| ACCAAGCACCAGCACAGATA+TGG | + | chr1.4:20122534-20122553 | None:intergenic | 50.0% | |
| CAACCCAGATGAACGGTTCA+AGG | - | chr1.4:20124116-20124135 | MS.gene052890:intron | 50.0% | |
| CTTGAACCGTTCATCTGGGT+TGG | + | chr1.4:20124118-20124137 | None:intergenic | 50.0% | |
| GAAATCTCGCCGTGATTCTG+TGG | + | chr1.4:20121640-20121659 | None:intergenic | 50.0% | |
| GAGTCATAGTTACCGCCCTT+TGG | - | chr1.4:20124036-20124055 | MS.gene052890:intron | 50.0% | |
| GATGAAGGGTCCTCTTCTCT+AGG | + | chr1.4:20124625-20124644 | None:intergenic | 50.0% | |
| GCCGTGATTCTGTGGAAATG+CGG | + | chr1.4:20121632-20121651 | None:intergenic | 50.0% | |
| GTGGCAGCCATAGCTCATAT+AGG | - | chr1.4:20122737-20122756 | MS.gene052890:intron | 50.0% | |
| TGTGCCAAAGGGCTTGACTA+AGG | + | chr1.4:20123527-20123546 | None:intergenic | 50.0% | |
| ! | ATCCTTAGGGCCGACTCATA+AGG | + | chr1.4:20123612-20123631 | None:intergenic | 50.0% |
| ! | CAGACTGCAGCTGCACTTTT+CGG | + | chr1.4:20122287-20122306 | None:intergenic | 50.0% |
| ! | GAGTTGTGACTTGGGGATGA+GGG | - | chr1.4:20124079-20124098 | MS.gene052890:intron | 50.0% |
| ! | TCCATATCTGTGCTGGTGCT+TGG | - | chr1.4:20122530-20122549 | MS.gene052890:intron | 50.0% |
| ! | TGAGTTGTGACTTGGGGATG+AGG | - | chr1.4:20124078-20124097 | MS.gene052890:intron | 50.0% |
| ACATGACGCAGGATCTGCAG+CGG | - | chr1.4:20123284-20123303 | MS.gene052890:intron | 55.0% | |
| ACTCAACAAACGTTCGGGCC+TGG | + | chr1.4:20124063-20124082 | None:intergenic | 55.0% | |
| GTGCAGCTGCAGTCTGTGAT+AGG | - | chr1.4:20122291-20122310 | MS.gene052890:intron | 55.0% | |
| TAGTTACCGCCCTTTGGTCC+AGG | - | chr1.4:20124042-20124061 | MS.gene052890:intron | 55.0% | |
| TGCCTTATGAGTCGGCCCTA+AGG | - | chr1.4:20123607-20123626 | MS.gene052890:intron | 55.0% | |
| ! | TTGTGACTTGGGGATGAGGG+TGG | - | chr1.4:20124082-20124101 | MS.gene052890:intron | 55.0% |
| AACGTTCGGGCCTGGACCAA+AGG | + | chr1.4:20124055-20124074 | None:intergenic | 60.0% | |
| ACGTTCGGGCCTGGACCAAA+GGG | + | chr1.4:20124054-20124073 | None:intergenic | 60.0% | |
| CATGACGCAGGATCTGCAGC+GGG | - | chr1.4:20123285-20123304 | MS.gene052890:intron | 60.0% | |
| TTCGGGCCTGGACCAAAGGG+CGG | + | chr1.4:20124051-20124070 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20120337 | 20124867 | 20120337 | ID=MS.gene052890 |
| chr1.4 | mRNA | 20120337 | 20124867 | 20120337 | ID=MS.gene052890.t1;Parent=MS.gene052890 |
| chr1.4 | exon | 20124819 | 20124867 | 20124819 | ID=MS.gene052890.t1.exon1;Parent=MS.gene052890.t1 |
| chr1.4 | CDS | 20124819 | 20124867 | 20124819 | ID=cds.MS.gene052890.t1;Parent=MS.gene052890.t1 |
| chr1.4 | exon | 20123104 | 20123159 | 20123104 | ID=MS.gene052890.t1.exon2;Parent=MS.gene052890.t1 |
| chr1.4 | CDS | 20123104 | 20123159 | 20123104 | ID=cds.MS.gene052890.t1;Parent=MS.gene052890.t1 |
| chr1.4 | exon | 20122793 | 20122924 | 20122793 | ID=MS.gene052890.t1.exon3;Parent=MS.gene052890.t1 |
| chr1.4 | CDS | 20122793 | 20122924 | 20122793 | ID=cds.MS.gene052890.t1;Parent=MS.gene052890.t1 |
| chr1.4 | exon | 20121636 | 20121928 | 20121636 | ID=MS.gene052890.t1.exon4;Parent=MS.gene052890.t1 |
| chr1.4 | CDS | 20121636 | 20121928 | 20121636 | ID=cds.MS.gene052890.t1;Parent=MS.gene052890.t1 |
| chr1.4 | exon | 20120541 | 20120736 | 20120541 | ID=MS.gene052890.t1.exon5;Parent=MS.gene052890.t1 |
| chr1.4 | CDS | 20120541 | 20120736 | 20120541 | ID=cds.MS.gene052890.t1;Parent=MS.gene052890.t1 |
| chr1.4 | exon | 20120337 | 20120436 | 20120337 | ID=MS.gene052890.t1.exon6;Parent=MS.gene052890.t1 |
| chr1.4 | CDS | 20120337 | 20120436 | 20120337 | ID=cds.MS.gene052890.t1;Parent=MS.gene052890.t1 |
| Gene Sequence |
| Protein sequence |
