Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052888.t1 | XP_013466771.1 | 98.3 | 294 | 5 | 0 | 2 | 295 | 293 | 586 | 7.10E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052888.t1 | A0A072VGA5 | 98.3 | 294 | 5 | 0 | 2 | 295 | 293 | 586 | 5.1e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052855 | MS.gene052888 | 0.882724 | 8.19E-71 | -1.69E-46 |
| MS.gene052888 | MS.gene052889 | 0.970563 | 8.28E-132 | -1.69E-46 |
| MS.gene052888 | MS.gene052890 | 0.907537 | 4.55E-81 | -1.69E-46 |
| MS.gene052888 | MS.gene055513 | 0.803946 | 2.73E-49 | -1.69E-46 |
| MS.gene052888 | MS.gene057102 | 0.800418 | 1.45E-48 | -1.69E-46 |
| MS.gene052888 | MS.gene33651 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene052888 | MS.gene41678 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene052888 | MS.gene48037 | 0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene052888 | MS.gene62676 | 0.809461 | 1.87E-50 | -1.69E-46 |
| MS.gene052888 | MS.gene62677 | 0.812265 | 4.63E-51 | -1.69E-46 |
| MS.gene052888 | MS.gene70154 | 0.815074 | 1.11E-51 | -1.69E-46 |
| MS.gene052888 | MS.gene70656 | 0.803014 | 4.27E-49 | -1.69E-46 |
| MS.gene052888 | MS.gene71945 | 0.805901 | 1.07E-49 | -1.69E-46 |
| MS.gene052888 | MS.gene72376 | 0.810969 | 8.85E-51 | -1.69E-46 |
| MS.gene052888 | MS.gene76244 | 0.802654 | 5.06E-49 | -1.69E-46 |
| MS.gene052888 | MS.gene87673 | 0.814541 | 1.46E-51 | -1.69E-46 |
| MS.gene052888 | MS.gene94674 | 0.811496 | 6.80E-51 | -1.69E-46 |
| MS.gene052888 | MS.gene99894 | 0.829173 | 5.97E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052888.t1 | MTR_1g035690 | 98.299 | 294 | 5 | 0 | 2 | 295 | 293 | 586 | 0.0 | 610 |
| MS.gene052888.t1 | MTR_8g033290 | 75.170 | 294 | 72 | 1 | 2 | 294 | 315 | 608 | 3.01e-165 | 473 |
| MS.gene052888.t1 | MTR_3g073590 | 47.440 | 293 | 151 | 3 | 2 | 291 | 493 | 785 | 3.57e-87 | 277 |
| MS.gene052888.t1 | MTR_5g061340 | 46.758 | 293 | 153 | 3 | 2 | 291 | 666 | 958 | 7.84e-84 | 271 |
| MS.gene052888.t1 | MTR_5g018820 | 34.437 | 151 | 91 | 2 | 95 | 237 | 395 | 545 | 2.00e-19 | 88.6 |
| MS.gene052888.t1 | MTR_8g078760 | 34.706 | 170 | 99 | 4 | 105 | 265 | 408 | 574 | 3.81e-19 | 87.8 |
| MS.gene052888.t1 | MTR_5g012790 | 26.613 | 248 | 158 | 10 | 47 | 279 | 309 | 547 | 6.19e-17 | 81.3 |
| MS.gene052888.t1 | MTR_4g068920 | 31.818 | 154 | 97 | 3 | 95 | 240 | 405 | 558 | 6.35e-17 | 81.3 |
| MS.gene052888.t1 | MTR_8g078760 | 32.824 | 131 | 80 | 2 | 95 | 217 | 398 | 528 | 7.74e-13 | 68.9 |
| MS.gene052888.t1 | MTR_4g058015 | 26.768 | 198 | 122 | 6 | 95 | 278 | 461 | 649 | 2.95e-12 | 67.4 |
| MS.gene052888.t1 | MTR_3g101340 | 27.660 | 188 | 110 | 7 | 101 | 274 | 347 | 522 | 4.60e-12 | 66.6 |
| MS.gene052888.t1 | MTR_3g101340 | 27.660 | 188 | 110 | 7 | 101 | 274 | 321 | 496 | 4.92e-12 | 66.6 |
| MS.gene052888.t1 | MTR_8g079840 | 28.962 | 183 | 106 | 8 | 105 | 274 | 383 | 554 | 3.09e-11 | 64.3 |
| MS.gene052888.t1 | MTR_3g101340 | 26.531 | 196 | 110 | 7 | 101 | 274 | 346 | 529 | 4.70e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052888.t1 | AT3G11920 | 63.051 | 295 | 107 | 2 | 2 | 294 | 320 | 614 | 9.55e-135 | 395 |
| MS.gene052888.t1 | AT4G08550 | 42.857 | 294 | 165 | 3 | 2 | 292 | 382 | 675 | 3.45e-75 | 243 |
| MS.gene052888.t1 | AT4G08550 | 42.917 | 240 | 135 | 2 | 55 | 292 | 382 | 621 | 2.46e-60 | 202 |
| MS.gene052888.t1 | AT1G16750 | 31.707 | 205 | 125 | 6 | 92 | 286 | 295 | 494 | 4.60e-21 | 93.2 |
| MS.gene052888.t1 | AT3G13000 | 30.085 | 236 | 130 | 7 | 75 | 292 | 303 | 521 | 1.76e-20 | 91.7 |
| MS.gene052888.t1 | AT3G13000 | 30.085 | 236 | 130 | 7 | 75 | 292 | 332 | 550 | 1.77e-20 | 91.7 |
| MS.gene052888.t1 | AT3G13000 | 30.085 | 236 | 130 | 7 | 75 | 292 | 332 | 550 | 1.77e-20 | 91.7 |
| MS.gene052888.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 95 | 265 | 365 | 539 | 9.01e-19 | 86.7 |
| MS.gene052888.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 95 | 265 | 331 | 505 | 1.04e-18 | 86.7 |
| MS.gene052888.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 95 | 265 | 385 | 559 | 1.15e-18 | 86.7 |
| MS.gene052888.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 95 | 265 | 385 | 559 | 1.15e-18 | 86.7 |
| MS.gene052888.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 95 | 265 | 385 | 559 | 1.15e-18 | 86.7 |
| MS.gene052888.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 95 | 265 | 385 | 559 | 1.15e-18 | 86.7 |
| MS.gene052888.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 95 | 265 | 385 | 559 | 1.15e-18 | 86.7 |
| MS.gene052888.t1 | AT2G23700 | 32.778 | 180 | 106 | 5 | 96 | 265 | 479 | 653 | 1.07e-17 | 83.6 |
| MS.gene052888.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 95 | 274 | 290 | 469 | 1.47e-16 | 80.1 |
| MS.gene052888.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 95 | 274 | 265 | 444 | 1.59e-16 | 79.7 |
| MS.gene052888.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 95 | 274 | 316 | 495 | 2.02e-16 | 79.7 |
| MS.gene052888.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 95 | 274 | 317 | 496 | 2.04e-16 | 79.7 |
| MS.gene052888.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 95 | 274 | 317 | 496 | 2.04e-16 | 79.7 |
| MS.gene052888.t1 | AT1G43020 | 29.775 | 178 | 115 | 2 | 85 | 255 | 202 | 376 | 3.51e-14 | 72.8 |
| MS.gene052888.t1 | AT5G47380 | 25.820 | 244 | 163 | 8 | 63 | 295 | 328 | 564 | 3.80e-14 | 73.2 |
| MS.gene052888.t1 | AT5G47380 | 25.820 | 244 | 163 | 8 | 63 | 295 | 328 | 564 | 3.89e-14 | 72.8 |
| MS.gene052888.t1 | AT5G47380 | 25.820 | 244 | 163 | 8 | 63 | 295 | 272 | 508 | 3.95e-14 | 72.8 |
| MS.gene052888.t1 | AT3G18900 | 30.625 | 160 | 99 | 4 | 95 | 245 | 228 | 384 | 8.95e-14 | 71.6 |
| MS.gene052888.t1 | AT3G18900 | 30.625 | 160 | 99 | 4 | 95 | 245 | 228 | 384 | 8.95e-14 | 71.6 |
| MS.gene052888.t1 | AT3G18900 | 30.625 | 160 | 99 | 4 | 95 | 245 | 309 | 465 | 1.17e-13 | 71.2 |
| MS.gene052888.t1 | AT3G18900 | 30.625 | 160 | 99 | 4 | 95 | 245 | 304 | 460 | 1.23e-13 | 71.2 |
| MS.gene052888.t1 | AT4G37080 | 30.508 | 177 | 111 | 6 | 105 | 274 | 396 | 567 | 4.58e-13 | 69.7 |
| MS.gene052888.t1 | AT4G37080 | 30.508 | 177 | 111 | 6 | 105 | 274 | 396 | 567 | 4.58e-13 | 69.7 |
| MS.gene052888.t1 | AT4G37080 | 30.508 | 177 | 111 | 6 | 105 | 274 | 383 | 554 | 4.84e-13 | 69.7 |
| MS.gene052888.t1 | AT5G60720 | 30.303 | 198 | 109 | 7 | 101 | 278 | 460 | 648 | 1.40e-12 | 68.2 |
| MS.gene052888.t1 | AT1G16750 | 46.154 | 78 | 37 | 2 | 92 | 166 | 295 | 370 | 2.02e-12 | 67.4 |
| MS.gene052888.t1 | AT1G76620 | 28.571 | 182 | 114 | 6 | 95 | 265 | 293 | 469 | 2.11e-12 | 67.8 |
| MS.gene052888.t1 | AT5G66600 | 31.538 | 130 | 82 | 2 | 95 | 217 | 385 | 514 | 2.17e-12 | 67.8 |
| MS.gene052888.t1 | AT5G66600 | 31.538 | 130 | 82 | 2 | 95 | 217 | 385 | 514 | 2.17e-12 | 67.8 |
| MS.gene052888.t1 | AT5G66600 | 31.538 | 130 | 82 | 2 | 95 | 217 | 385 | 514 | 2.17e-12 | 67.8 |
| MS.gene052888.t1 | AT5G66600 | 31.538 | 130 | 82 | 2 | 95 | 217 | 385 | 514 | 2.17e-12 | 67.8 |
Find 56 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTACCACTTCAAAAT+TGG | 0.141892 | 1.1:-20133612 | None:intergenic |
| TCTCAAAATGTTTCAATTTC+CGG | 0.172190 | 1.1:+20131200 | MS.gene052888:CDS |
| TGCAGGTACAGTGTTGATTT+TGG | 0.235808 | 1.1:+20133725 | MS.gene052888:intron |
| ATGAAAGAAATGTGGTAAAA+TGG | 0.248386 | 1.1:+20133750 | MS.gene052888:CDS |
| CTCAAAATGTTTCAATTTCC+GGG | 0.252022 | 1.1:+20131201 | MS.gene052888:CDS |
| GTAATAGTGGCAAGAGAATA+AGG | 0.303287 | 1.1:-20132423 | None:intergenic |
| TCAGCAAAAGTGAAGAATTT+AGG | 0.316081 | 1.1:+20131347 | MS.gene052888:CDS |
| TCTGATTTCCAGTATTTGAT+TGG | 0.336556 | 1.1:+20132393 | MS.gene052888:CDS |
| AAGGGCTTGACTAAGGAATA+AGG | 0.386116 | 1.1:-20132477 | None:intergenic |
| ATGAATCCTTTGATTCACTT+TGG | 0.386588 | 1.1:+20133444 | MS.gene052888:CDS |
| AGTCTTATGCTTCTGAAGAT+AGG | 0.396481 | 1.1:+20131302 | MS.gene052888:CDS |
| AGATAAACGGTTCATGTTCA+AGG | 0.408067 | 1.1:-20131180 | None:intergenic |
| GAGGATACCATTTGTAATAG+TGG | 0.409546 | 1.1:-20132436 | None:intergenic |
| CTTCTGTCATTTGTGCCAAA+GGG | 0.419712 | 1.1:-20132495 | None:intergenic |
| ATTCACTTTGGACTTTGTAA+TGG | 0.433942 | 1.1:+20133456 | MS.gene052888:CDS |
| TGCAACTAGAGAGTTCTTAG+AGG | 0.440255 | 1.1:+20133542 | MS.gene052888:CDS |
| GTGCAGCTGCAGTCTGTGAT+AGG | 0.443467 | 1.1:+20131251 | MS.gene052888:CDS |
| GTCAAGAAGGTGTAATCAAT+AGG | 0.445472 | 1.1:+20132361 | MS.gene052888:CDS |
| TCAAAATTGGAGTGAGATGA+AGG | 0.447979 | 1.1:-20133599 | None:intergenic |
| TATTCCTTAGTCAAGCCCTT+TGG | 0.459648 | 1.1:+20132480 | MS.gene052888:CDS |
| AGAAGCATAAGACTCAAGTA+TGG | 0.463463 | 1.1:-20131293 | None:intergenic |
| CCTTCTGTCATTTGTGCCAA+AGG | 0.463764 | 1.1:-20132496 | None:intergenic |
| TCTCTTGCCACTATTACAAA+TGG | 0.468074 | 1.1:+20132429 | MS.gene052888:CDS |
| TTGACACATCTCTTAGCTGA+TGG | 0.468309 | 1.1:+20133809 | MS.gene052888:CDS |
| GATTTCCAGTATTTGATTGG+AGG | 0.471100 | 1.1:+20132396 | MS.gene052888:CDS |
| TGTGCCAAAGGGCTTGACTA+AGG | 0.473650 | 1.1:-20132484 | None:intergenic |
| GATGTCCTCCAATCAAATAC+TGG | 0.481014 | 1.1:-20132401 | None:intergenic |
| AATGCTTAGGCTGTTGAGGT+TGG | 0.495478 | 1.1:+20130994 | MS.gene052888:intron |
| GTGATCTTCGATTGCTTCTG+AGG | 0.509976 | 1.1:-20132455 | None:intergenic |
| TACTTGGATGCAAATAAAGC+TGG | 0.516390 | 1.1:+20133782 | MS.gene052888:CDS |
| AGAGAGTTCTTAGAGGATGA+TGG | 0.517425 | 1.1:+20133549 | MS.gene052888:CDS |
| AACAAATGCTTAGGCTGTTG+AGG | 0.523405 | 1.1:+20130990 | MS.gene052888:intron |
| AACTCTTCAGCAACTCTACA+AGG | 0.523810 | 1.1:-20133513 | None:intergenic |
| CAAAGTCCAAAGTGAATCAA+AGG | 0.526806 | 1.1:-20133450 | None:intergenic |
| TAGGAGACATGTTGATTATG+TGG | 0.538664 | 1.1:+20131321 | MS.gene052888:CDS |
| CTTAAACTTGTACAATGCCA+TGG | 0.555357 | 1.1:+20132311 | MS.gene052888:CDS |
| ACACATCTCTTAGCTGATGG+TGG | 0.563336 | 1.1:+20133812 | MS.gene052888:CDS |
| ATCCTACTCTTATCATAGCA+TGG | 0.563711 | 1.1:-20132338 | None:intergenic |
| GATGAAGGGTCCTCTTCTCT+AGG | 0.574774 | 1.1:-20133584 | None:intergenic |
| TTTCTTACCCGAAAACAGGA+TGG | 0.586581 | 1.1:-20131044 | None:intergenic |
| CAAATACTGGAAATCAGAGA+AGG | 0.589193 | 1.1:-20132388 | None:intergenic |
| CACTATCATTTGTAGCACCC+CGG | 0.589714 | 1.1:-20131219 | None:intergenic |
| AAAATGGATAATGAATTACT+TGG | 0.594459 | 1.1:+20133766 | MS.gene052888:CDS |
| GCAAAAGTGAAGAATTTAGG+AGG | 0.612288 | 1.1:+20131350 | MS.gene052888:CDS |
| CATGACGCAGGATCTGCAGC+GGG | 0.615533 | 1.1:+20132245 | MS.gene052888:CDS |
| TCAAAATGTTTCAATTTCCG+GGG | 0.620972 | 1.1:+20131202 | MS.gene052888:CDS |
| ATAAGAGTAGGATGTCAAGA+AGG | 0.626225 | 1.1:+20132348 | MS.gene052888:CDS |
| ATCCATGCTATGATAAGAGT+AGG | 0.628623 | 1.1:+20132336 | MS.gene052888:CDS |
| TTGAAGTTGACCTAGAGAAG+AGG | 0.632403 | 1.1:+20133574 | MS.gene052888:CDS |
| CAAAATTGGAGTGAGATGAA+GGG | 0.633095 | 1.1:-20133598 | None:intergenic |
| CCTTTGGCACAAATGACAGA+AGG | 0.637419 | 1.1:+20132496 | MS.gene052888:CDS |
| CACAAATGACAGAAGGCTAG+AGG | 0.644355 | 1.1:+20132503 | MS.gene052888:CDS |
| TATCATAGCATGGATGACCA+TGG | 0.646877 | 1.1:-20132328 | None:intergenic |
| CTAAATCAAGCCCAAAAGTG+AGG | 0.651929 | 1.1:+20133481 | MS.gene052888:CDS |
| CAGGTATGTAAACATGACGC+AGG | 0.659327 | 1.1:+20132233 | MS.gene052888:intron |
| ACATGACGCAGGATCTGCAG+CGG | 0.677376 | 1.1:+20132244 | MS.gene052888:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTCTATAAAAAATTAT+AGG | + | chr1.1:20129638-20129657 | MS.gene052888:intron | 10.0% |
| !! | TATTCAAATTGAATAAATAT+AGG | - | chr1.1:20130515-20130534 | None:intergenic | 10.0% |
| !!! | TACATTTTTAAAAAGTAAAA+GGG | - | chr1.1:20132639-20132658 | None:intergenic | 10.0% |
| !!! | TTACATTTTTAAAAAGTAAA+AGG | - | chr1.1:20132640-20132659 | None:intergenic | 10.0% |
| !!! | TTTTCTTGAAAAAAAAAAAT+AGG | + | chr1.1:20130089-20130108 | MS.gene052888:intron | 10.0% |
| !! | ATATAATGAAAAAACATGTT+TGG | + | chr1.1:20132774-20132793 | MS.gene052888:intron | 15.0% |
| !! | CTATTACTTAAAAAACATAT+TGG | - | chr1.1:20131096-20131115 | None:intergenic | 15.0% |
| !! | TAAAAGAAATATTTAATGGA+CGG | + | chr1.1:20129583-20129602 | MS.gene052888:intron | 15.0% |
| !! | TAGTAATTTATATTATTTGC+AGG | + | chr1.1:20133708-20133727 | MS.gene052888:intron | 15.0% |
| !!! | AAAATAATATTTGACTGTTT+TGG | + | chr1.1:20129509-20129528 | MS.gene052888:intron | 15.0% |
| !!! | AACACTAGTTTAATTTTATT+TGG | - | chr1.1:20132947-20132966 | None:intergenic | 15.0% |
| !!! | AATGTAATAATTTTTTTCCT+TGG | + | chr1.1:20132653-20132672 | MS.gene052888:intron | 15.0% |
| !!! | ATTTTCTTTAAAAAGAATAG+AGG | - | chr1.1:20132022-20132041 | None:intergenic | 15.0% |
| !!! | TGTGTTTCAATATTAAATTT+TGG | + | chr1.1:20132534-20132553 | MS.gene052888:intron | 15.0% |
| !!! | TTTTTTTTCAAGAAAAGAAA+AGG | - | chr1.1:20130085-20130104 | None:intergenic | 15.0% |
| !! | AAAAAATATAAGTTGCAAAC+TGG | - | chr1.1:20131901-20131920 | None:intergenic | 20.0% |
| !! | AAAATGGATAATGAATTACT+TGG | + | chr1.1:20133766-20133785 | MS.gene052888:CDS | 20.0% |
| !! | ATAGTAATGAAAAAGTTCAA+AGG | + | chr1.1:20129532-20129551 | MS.gene052888:intron | 20.0% |
| !! | ATGAATATACGAAAAACAAA+AGG | - | chr1.1:20133252-20133271 | None:intergenic | 20.0% |
| !! | ATTATATAATACATGTCGAA+AGG | - | chr1.1:20132108-20132127 | None:intergenic | 20.0% |
| !! | CATTCAATAAATAATGTATG+TGG | - | chr1.1:20129810-20129829 | None:intergenic | 20.0% |
| !! | CTTAAAAATTCAATGCAAAT+TGG | - | chr1.1:20130269-20130288 | None:intergenic | 20.0% |
| !! | TAACTAAAATTCTAGATTCT+AGG | - | chr1.1:20132683-20132702 | None:intergenic | 20.0% |
| !! | TACAAGAAGAAAATTAATCA+AGG | - | chr1.1:20131120-20131139 | None:intergenic | 20.0% |
| !! | TCAATCAAACATATATCAAT+TGG | - | chr1.1:20129950-20129969 | None:intergenic | 20.0% |
| !! | TGAATATACGAAAAACAAAA+GGG | - | chr1.1:20133251-20133270 | None:intergenic | 20.0% |
| !! | TTATATAATACATGTCGAAA+GGG | - | chr1.1:20132107-20132126 | None:intergenic | 20.0% |
| !!! | AAAAGAAAAGGCTAAAATTT+TGG | - | chr1.1:20130073-20130092 | None:intergenic | 20.0% |
| !!! | ATAAATGTTTTCCATTTTCA+AGG | - | chr1.1:20130151-20130170 | None:intergenic | 20.0% |
| !!! | GAGTATTTTTTAACAATCTT+AGG | + | chr1.1:20129871-20129890 | MS.gene052888:intron | 20.0% |
| !!! | TGATTAATTTTCTTCTTGTA+GGG | + | chr1.1:20131120-20131139 | MS.gene052888:intron | 20.0% |
| !!! | TTGAAACATTTTGAGATAAA+CGG | - | chr1.1:20131196-20131215 | None:intergenic | 20.0% |
| !!! | TTGATTAATTTTCTTCTTGT+AGG | + | chr1.1:20131119-20131138 | MS.gene052888:intron | 20.0% |
| !!! | TTTTAGTTGACATTTTGATT+TGG | + | chr1.1:20129459-20129478 | MS.gene052888:intron | 20.0% |
| !!! | TTTTTTGGTAATCAAGTTAT+TGG | - | chr1.1:20132876-20132895 | None:intergenic | 20.0% |
| ! | AAAGAAAATTTGATTGAGTG+AGG | + | chr1.1:20129977-20129996 | MS.gene052888:intron | 25.0% |
| ! | AAATAGTTATCGCACTTTAT+GGG | - | chr1.1:20133333-20133352 | None:intergenic | 25.0% |
| ! | AAATCACAAAAACTTTGCAT+TGG | + | chr1.1:20130651-20130670 | MS.gene052888:intron | 25.0% |
| ! | AATCTTTCTCAAAATCCTTA+GGG | - | chr1.1:20132585-20132604 | None:intergenic | 25.0% |
| ! | AATGAAAAAACATGTTTGGA+AGG | + | chr1.1:20132778-20132797 | MS.gene052888:intron | 25.0% |
| ! | ACATGTTAAGATACATGTTA+AGG | - | chr1.1:20130047-20130066 | None:intergenic | 25.0% |
| ! | ATGAAAAAACATGTTTGGAA+GGG | + | chr1.1:20132779-20132798 | MS.gene052888:intron | 25.0% |
| ! | ATGAAAGAAATGTGGTAAAA+TGG | + | chr1.1:20133750-20133769 | MS.gene052888:CDS | 25.0% |
| ! | CAAGTTAGAACTAACATATA+AGG | - | chr1.1:20131573-20131592 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr1.1:20129771-20129790 | MS.gene052888:intron | 25.0% |
| ! | CTTAATTACCACTTCAAAAT+TGG | - | chr1.1:20133615-20133634 | None:intergenic | 25.0% |
| ! | GGTCAATTATAGTAATTCAA+GGG | - | chr1.1:20132926-20132945 | None:intergenic | 25.0% |
| ! | GTAAATCTTATTGTCTATCA+CGG | + | chr1.1:20131380-20131399 | MS.gene052888:intron | 25.0% |
| ! | GTATATTCATTCTATTGAAC+CGG | + | chr1.1:20133262-20133281 | MS.gene052888:intron | 25.0% |
| ! | TAACTTGATTACCAAAAAAC+AGG | + | chr1.1:20132877-20132896 | MS.gene052888:intron | 25.0% |
| ! | TAATTGCATGAAGCTAAATT+TGG | - | chr1.1:20131794-20131813 | None:intergenic | 25.0% |
| ! | TCGTTAGAGAAACATAATTT+AGG | - | chr1.1:20130939-20130958 | None:intergenic | 25.0% |
| ! | TCTCAAAATGTTTCAATTTC+CGG | + | chr1.1:20131200-20131219 | MS.gene052888:CDS | 25.0% |
| ! | TGGTCAATTATAGTAATTCA+AGG | - | chr1.1:20132927-20132946 | None:intergenic | 25.0% |
| ! | TTGTCACATTCATTATTTGA+CGG | + | chr1.1:20130789-20130808 | MS.gene052888:intron | 25.0% |
| ! | TTGTTAAAAAATACTCTCTC+CGG | - | chr1.1:20129867-20129886 | None:intergenic | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | + | chr1.1:20129845-20129864 | MS.gene052888:intron | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | - | chr1.1:20129864-20129845 | None:intergenic | 25.0% |
| !! | ACATTCTGCTATTGATAATA+TGG | + | chr1.1:20133364-20133383 | MS.gene052888:intron | 25.0% |
| !! | ATTTCATTCAAGTTTAGCTT+AGG | - | chr1.1:20132152-20132171 | None:intergenic | 25.0% |
| !! | GTGAGTCAACTAAAATTTTA+GGG | - | chr1.1:20132904-20132923 | None:intergenic | 25.0% |
| !! | TTTTTGCTAATGTGTAAAGT+AGG | - | chr1.1:20129610-20129629 | None:intergenic | 25.0% |
| !!! | AAAGTGATTTTTCAAAATGC+AGG | + | chr1.1:20132214-20132233 | MS.gene052888:intron | 25.0% |
| !!! | AATGTTTTTAAGTGTGTGAT+TGG | - | chr1.1:20130717-20130736 | None:intergenic | 25.0% |
| !!! | ATTTTGTTACTTCTGATATG+AGG | + | chr1.1:20132176-20132195 | MS.gene052888:intron | 25.0% |
| !!! | GTAATAATTTTTTTCCTTGG+TGG | + | chr1.1:20132656-20132675 | MS.gene052888:intron | 25.0% |
| !!! | TTTTGGAAATGAAAGAAATG+TGG | + | chr1.1:20133742-20133761 | MS.gene052888:CDS | 25.0% |
| AAAGAAATGCAGAGAATAAC+AGG | + | chr1.1:20131643-20131662 | MS.gene052888:intron | 30.0% | |
| AAATCTCAGACCTTACTTAA+GGG | - | chr1.1:20132747-20132766 | None:intergenic | 30.0% | |
| AAGAAAATACCTGAATTTGC+CGG | + | chr1.1:20132034-20132053 | MS.gene052888:intron | 30.0% | |
| AATGTGGATGAATGAAATGA+AGG | + | chr1.1:20131524-20131543 | MS.gene052888:intron | 30.0% | |
| AGGTTTCAAAAGTAGGTTAT+AGG | - | chr1.1:20132083-20132102 | None:intergenic | 30.0% | |
| ATCTCCATCAAAAAATTGTG+AGG | - | chr1.1:20130020-20130039 | None:intergenic | 30.0% | |
| ATGAATCCTTTGATTCACTT+TGG | + | chr1.1:20133444-20133463 | MS.gene052888:CDS | 30.0% | |
| ATGTGGATGAATGAAATGAA+GGG | + | chr1.1:20131525-20131544 | MS.gene052888:intron | 30.0% | |
| ATTCACTTTGGACTTTGTAA+TGG | + | chr1.1:20133456-20133475 | MS.gene052888:CDS | 30.0% | |
| CAATCTTTCTCAAAATCCTT+AGG | - | chr1.1:20132586-20132605 | None:intergenic | 30.0% | |
| CACATGACATATGTTACATT+TGG | - | chr1.1:20129910-20129929 | None:intergenic | 30.0% | |
| CTCAAAATGTTTCAATTTCC+GGG | + | chr1.1:20131201-20131220 | MS.gene052888:CDS | 30.0% | |
| GAAATAGTTATCGCACTTTA+TGG | - | chr1.1:20133334-20133353 | None:intergenic | 30.0% | |
| GTCACAGAATTTAATGTGTT+CGG | + | chr1.1:20130755-20130774 | MS.gene052888:intron | 30.0% | |
| TCAAAATGTTTCAATTTCCG+GGG | + | chr1.1:20131202-20131221 | MS.gene052888:CDS | 30.0% | |
| TCAACTCACAGAAAATTTGA+AGG | - | chr1.1:20132973-20132992 | None:intergenic | 30.0% | |
| TCAGCAAAAGTGAAGAATTT+AGG | + | chr1.1:20131347-20131366 | MS.gene052888:CDS | 30.0% | |
| TCATTCCAAAACAAATGCTT+AGG | + | chr1.1:20130981-20131000 | MS.gene052888:intron | 30.0% | |
| TCTGATTTCCAGTATTTGAT+TGG | + | chr1.1:20132393-20132412 | MS.gene052888:CDS | 30.0% | |
| TGAAAAAACATGTTTGGAAG+GGG | + | chr1.1:20132780-20132799 | MS.gene052888:intron | 30.0% | |
| TGTCACATTCATTATTTGAC+GGG | + | chr1.1:20130790-20130809 | MS.gene052888:intron | 30.0% | |
| TTCAAGGGAATGTTATAATC+TGG | + | chr1.1:20133093-20133112 | MS.gene052888:intron | 30.0% | |
| TTTCATTCATCCACATTTCT+CGG | - | chr1.1:20131521-20131540 | None:intergenic | 30.0% | |
| ! | AAACTTTGCATTGGTAATCT+CGG | + | chr1.1:20130660-20130679 | MS.gene052888:intron | 30.0% |
| ! | AACATATTGGTAGCTTTCTT+TGG | - | chr1.1:20131083-20131102 | None:intergenic | 30.0% |
| ! | GGTGAGTCAACTAAAATTTT+AGG | - | chr1.1:20132905-20132924 | None:intergenic | 30.0% |
| ! | TTATTTTCTTACCCGAAAAC+AGG | - | chr1.1:20131051-20131070 | None:intergenic | 30.0% |
| ! | TTTTCTTCTTGTAGGGAAAA+TGG | + | chr1.1:20131127-20131146 | MS.gene052888:intron | 30.0% |
| !! | AAATTCTTCACTTTTGCTGA+TGG | - | chr1.1:20131347-20131366 | None:intergenic | 30.0% |
| !! | GTGAAAAAAACCTCACTTTT+GGG | - | chr1.1:20133494-20133513 | None:intergenic | 30.0% |
| !! | TTTTAGTTACCAACGTTACA+TGG | + | chr1.1:20132694-20132713 | MS.gene052888:intron | 30.0% |
| !!! | AATTTTAGGGTCCTGTTTTT+TGG | - | chr1.1:20132891-20132910 | None:intergenic | 30.0% |
| AAAGGGAAATACACGATGTT+TGG | - | chr1.1:20133234-20133253 | None:intergenic | 35.0% | |
| AAAGGGAAGGTTTCAAAAGT+AGG | - | chr1.1:20132090-20132109 | None:intergenic | 35.0% | |
| AAGAAATTAACTACTCCCTC+CGG | + | chr1.1:20129714-20129733 | MS.gene052888:intron | 35.0% | |
| AAGAACCTTATTGCTGATAC+CGG | - | chr1.1:20132056-20132075 | None:intergenic | 35.0% | |
| AATTGGACCAAATCCATTGT+TGG | - | chr1.1:20129933-20129952 | None:intergenic | 35.0% | |
| AGATAAACGGTTCATGTTCA+AGG | - | chr1.1:20131183-20131202 | None:intergenic | 35.0% | |
| AGGGAATGTTATAATCTGGA+CGG | + | chr1.1:20133097-20133116 | MS.gene052888:intron | 35.0% | |
| AGTGAAGAATTTAGGAGGTA+TGG | + | chr1.1:20131355-20131374 | MS.gene052888:intron | 35.0% | |
| ATAAGAGTAGGATGTCAAGA+AGG | + | chr1.1:20132348-20132367 | MS.gene052888:CDS | 35.0% | |
| ATAATACATGTCGAAAGGGA+AGG | - | chr1.1:20132103-20132122 | None:intergenic | 35.0% | |
| ATCCATGCTATGATAAGAGT+AGG | + | chr1.1:20132336-20132355 | MS.gene052888:CDS | 35.0% | |
| ATCCTACTCTTATCATAGCA+TGG | - | chr1.1:20132341-20132360 | None:intergenic | 35.0% | |
| CAAAATTGGAGTGAGATGAA+GGG | - | chr1.1:20133601-20133620 | None:intergenic | 35.0% | |
| CAAACTACCTATATGAGCTA+TGG | - | chr1.1:20131707-20131726 | None:intergenic | 35.0% | |
| CAAAGTCCAAAGTGAATCAA+AGG | - | chr1.1:20133453-20133472 | None:intergenic | 35.0% | |
| CAAATACTGGAAATCAGAGA+AGG | - | chr1.1:20132391-20132410 | None:intergenic | 35.0% | |
| CAAATCTCAGACCTTACTTA+AGG | - | chr1.1:20132748-20132767 | None:intergenic | 35.0% | |
| CGTGTAGTGAAAACTAAGAT+TGG | - | chr1.1:20131947-20131966 | None:intergenic | 35.0% | |
| CTAATCTCTGTCAGAAAACA+TGG | - | chr1.1:20132828-20132847 | None:intergenic | 35.0% | |
| CTTAAACTTGTACAATGCCA+TGG | + | chr1.1:20132311-20132330 | MS.gene052888:CDS | 35.0% | |
| GAGGATACCATTTGTAATAG+TGG | - | chr1.1:20132439-20132458 | None:intergenic | 35.0% | |
| GATTTCCAGTATTTGATTGG+AGG | + | chr1.1:20132396-20132415 | MS.gene052888:CDS | 35.0% | |
| GCAAAAGTGAAGAATTTAGG+AGG | + | chr1.1:20131350-20131369 | MS.gene052888:CDS | 35.0% | |
| GCTATGTATAGAACATGTCA+AGG | + | chr1.1:20131605-20131624 | MS.gene052888:intron | 35.0% | |
| GGACTTAAATCCCTTAAGTA+AGG | + | chr1.1:20132734-20132753 | MS.gene052888:intron | 35.0% | |
| GTAATAGTGGCAAGAGAATA+AGG | - | chr1.1:20132426-20132445 | None:intergenic | 35.0% | |
| GTCACATTCATTATTTGACG+GGG | + | chr1.1:20130791-20130810 | MS.gene052888:intron | 35.0% | |
| TACTTGGATGCAAATAAAGC+TGG | + | chr1.1:20133782-20133801 | MS.gene052888:CDS | 35.0% | |
| TATGGACATTGAATACGAGA+CGG | - | chr1.1:20131476-20131495 | None:intergenic | 35.0% | |
| TCAAAATTGGAGTGAGATGA+AGG | - | chr1.1:20133602-20133621 | None:intergenic | 35.0% | |
| TCTCTTGCCACTATTACAAA+TGG | + | chr1.1:20132429-20132448 | MS.gene052888:CDS | 35.0% | |
| TTACACGTTAGTGTCACATA+CGG | + | chr1.1:20131842-20131861 | MS.gene052888:intron | 35.0% | |
| ! | AACAGCCTAAGCATTTGTTT+TGG | - | chr1.1:20130989-20131008 | None:intergenic | 35.0% |
| ! | ACATTTGTTGCCTTATGAGT+CGG | + | chr1.1:20132559-20132578 | MS.gene052888:intron | 35.0% |
| ! | AGAAGCATAAGACTCAAGTA+TGG | - | chr1.1:20131296-20131315 | None:intergenic | 35.0% |
| ! | AGATAGTGACTTGTGTTTCA+AGG | - | chr1.1:20131753-20131772 | None:intergenic | 35.0% |
| ! | AGTCTTATGCTTCTGAAGAT+AGG | + | chr1.1:20131302-20131321 | MS.gene052888:CDS | 35.0% |
| ! | CGATGTTTGGTAACAAAGTT+TGG | - | chr1.1:20133221-20133240 | None:intergenic | 35.0% |
| ! | GGTGAAAAAAACCTCACTTT+TGG | - | chr1.1:20133495-20133514 | None:intergenic | 35.0% |
| ! | GTCAAGAAGGTGTAATCAAT+AGG | + | chr1.1:20132361-20132380 | MS.gene052888:CDS | 35.0% |
| ! | TAGGAGACATGTTGATTATG+TGG | + | chr1.1:20131321-20131340 | MS.gene052888:CDS | 35.0% |
| !! | ATCTCACTCCAATTTTGAAG+TGG | + | chr1.1:20133604-20133623 | MS.gene052888:CDS | 35.0% |
| !! | GGGGAATGAATGTTTGATTT+TGG | + | chr1.1:20131970-20131989 | MS.gene052888:intron | 35.0% |
| !! | TTAGTTTTCACTACACGACT+GGG | + | chr1.1:20131950-20131969 | MS.gene052888:intron | 35.0% |
| !! | TTGTAGGGAAAATGGTTTTG+AGG | + | chr1.1:20131135-20131154 | MS.gene052888:intron | 35.0% |
| !!! | TGTGCCTCACAATTTTTTGA+TGG | + | chr1.1:20130013-20130032 | MS.gene052888:intron | 35.0% |
| AACAAATGCTTAGGCTGTTG+AGG | + | chr1.1:20130990-20131009 | MS.gene052888:intron | 40.0% | |
| AACTCTTCAGCAACTCTACA+AGG | - | chr1.1:20133516-20133535 | None:intergenic | 40.0% | |
| AAGGGCTTGACTAAGGAATA+AGG | - | chr1.1:20132480-20132499 | None:intergenic | 40.0% | |
| ACAAGCTGACACCTTGAAAA+TGG | + | chr1.1:20130137-20130156 | MS.gene052888:intron | 40.0% | |
| ACTGTCATAACTGCTAGTGA+TGG | + | chr1.1:20131673-20131692 | MS.gene052888:intron | 40.0% | |
| AGAGAGTTCTTAGAGGATGA+TGG | + | chr1.1:20133549-20133568 | MS.gene052888:CDS | 40.0% | |
| AGTTACCAACGTTACATGGT+CGG | + | chr1.1:20132698-20132717 | MS.gene052888:intron | 40.0% | |
| ATTTGCCGGTATCAGCAATA+AGG | + | chr1.1:20132048-20132067 | MS.gene052888:intron | 40.0% | |
| CACTAGCAGTTATGACAGTT+AGG | - | chr1.1:20131672-20131691 | None:intergenic | 40.0% | |
| CATATGTCATGTGCCAACAA+TGG | + | chr1.1:20129917-20129936 | MS.gene052888:intron | 40.0% | |
| CTAAATCAAGCCCAAAAGTG+AGG | + | chr1.1:20133481-20133500 | MS.gene052888:CDS | 40.0% | |
| GATAAGGTAGAAGTTCCGTT+TGG | + | chr1.1:20130618-20130637 | MS.gene052888:intron | 40.0% | |
| GATGTCCTCCAATCAAATAC+TGG | - | chr1.1:20132404-20132423 | None:intergenic | 40.0% | |
| GATTTCAAGAAGCGACCAAA+CGG | - | chr1.1:20130636-20130655 | None:intergenic | 40.0% | |
| GCATGAAGCTAAATTTGGCA+TGG | - | chr1.1:20131789-20131808 | None:intergenic | 40.0% | |
| GGTATCAGCAATAAGGTTCT+TGG | + | chr1.1:20132055-20132074 | MS.gene052888:intron | 40.0% | |
| GTCACAACTCAACAAACGTT+CGG | - | chr1.1:20133030-20133049 | None:intergenic | 40.0% | |
| TATCATAGCATGGATGACCA+TGG | - | chr1.1:20132331-20132350 | None:intergenic | 40.0% | |
| TATTCCTTAGTCAAGCCCTT+TGG | + | chr1.1:20132480-20132499 | MS.gene052888:CDS | 40.0% | |
| TCACAACTCAACAAACGTTC+GGG | - | chr1.1:20133029-20133048 | None:intergenic | 40.0% | |
| TGCAACTAGAGAGTTCTTAG+AGG | + | chr1.1:20133542-20133561 | MS.gene052888:CDS | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr1.1:20129868-20129849 | None:intergenic | 40.0% | |
| TTCAATGTCCATATCTGTGC+TGG | + | chr1.1:20131483-20131502 | MS.gene052888:intron | 40.0% | |
| TTGAAGTTGACCTAGAGAAG+AGG | + | chr1.1:20133574-20133593 | MS.gene052888:CDS | 40.0% | |
| TTGACACATCTCTTAGCTGA+TGG | + | chr1.1:20133809-20133828 | MS.gene052888:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr1.1:20129867-20129848 | None:intergenic | 40.0% | |
| TTTCTTACCCGAAAACAGGA+TGG | - | chr1.1:20131047-20131066 | None:intergenic | 40.0% | |
| ! | AACCGGAGTTGTTGTTCTAA+CGG | + | chr1.1:20133279-20133298 | MS.gene052888:intron | 40.0% |
| ! | ACGTTTGTTGAGTTGTGACT+TGG | + | chr1.1:20133031-20133050 | MS.gene052888:intron | 40.0% |
| ! | ACTTCATCCATCCTGTTTTC+GGG | + | chr1.1:20131037-20131056 | MS.gene052888:CDS | 40.0% |
| ! | CACTTCATCCATCCTGTTTT+CGG | + | chr1.1:20131036-20131055 | MS.gene052888:CDS | 40.0% |
| ! | CGTTTGTTGAGTTGTGACTT+GGG | + | chr1.1:20133032-20133051 | MS.gene052888:intron | 40.0% |
| ! | CTTCTGTCATTTGTGCCAAA+GGG | - | chr1.1:20132498-20132517 | None:intergenic | 40.0% |
| ! | GTTTGTTGAGTTGTGACTTG+GGG | + | chr1.1:20133033-20133052 | MS.gene052888:intron | 40.0% |
| ! | TAGTTTTCACTACACGACTG+GGG | + | chr1.1:20131951-20131970 | MS.gene052888:intron | 40.0% |
| ! | TCATGTGCCAACAATGGATT+TGG | + | chr1.1:20129923-20129942 | MS.gene052888:intron | 40.0% |
| !! | CTTAGTTTTCACTACACGAC+TGG | + | chr1.1:20131949-20131968 | MS.gene052888:intron | 40.0% |
| !! | GGATTCATTTTGACAACTGC+AGG | - | chr1.1:20133432-20133451 | None:intergenic | 40.0% |
| !! | TGTGTGATTGGTTGCACTTT+TGG | - | chr1.1:20130705-20130724 | None:intergenic | 40.0% |
| !!! | AGGGAAAATGGTTTTGAGGA+GGG | + | chr1.1:20131139-20131158 | MS.gene052888:intron | 40.0% |
| !!! | TAGGGAAAATGGTTTTGAGG+AGG | + | chr1.1:20131138-20131157 | MS.gene052888:intron | 40.0% |
| !!! | TGCAGGTACAGTGTTGATTT+TGG | + | chr1.1:20133725-20133744 | MS.gene052888:intron | 40.0% |
| AACCCAGATGAACGGTTCAA+GGG | + | chr1.1:20133078-20133097 | MS.gene052888:intron | 45.0% | |
| AATGCTTAGGCTGTTGAGGT+TGG | + | chr1.1:20130994-20131013 | MS.gene052888:intron | 45.0% | |
| ACACATCTCTTAGCTGATGG+TGG | + | chr1.1:20133812-20133831 | MS.gene052888:CDS | 45.0% | |
| ACGGCGAGATTTCGTTGATA+AGG | + | chr1.1:20130602-20130621 | MS.gene052888:intron | 45.0% | |
| AGGGGAAATTCCACAATAGG+TGG | + | chr1.1:20132798-20132817 | MS.gene052888:intron | 45.0% | |
| AGTAAAAGGGTCATGCATGC+AGG | - | chr1.1:20132626-20132645 | None:intergenic | 45.0% | |
| ATGGTCGGTCTTACTAGAAC+TGG | + | chr1.1:20132713-20132732 | MS.gene052888:intron | 45.0% | |
| ATGTCAAGGTGCACGATACA+AGG | + | chr1.1:20131619-20131638 | MS.gene052888:intron | 45.0% | |
| ATTCCCTTGAACCGTTCATC+TGG | - | chr1.1:20133084-20133103 | None:intergenic | 45.0% | |
| CACAAATGACAGAAGGCTAG+AGG | + | chr1.1:20132503-20132522 | MS.gene052888:CDS | 45.0% | |
| CACTATCATTTGTAGCACCC+CGG | - | chr1.1:20131222-20131241 | None:intergenic | 45.0% | |
| CAGGTATGTAAACATGACGC+AGG | + | chr1.1:20132233-20132252 | MS.gene052888:intron | 45.0% | |
| CCTTTGGCACAAATGACAGA+AGG | + | chr1.1:20132496-20132515 | MS.gene052888:CDS | 45.0% | |
| GGAAGGGGAAATTCCACAAT+AGG | + | chr1.1:20132795-20132814 | MS.gene052888:intron | 45.0% | |
| GTGATCTTCGATTGCTTCTG+AGG | - | chr1.1:20132458-20132477 | None:intergenic | 45.0% | |
| GTGGAAATGCGGAAATCTCA+CGG | - | chr1.1:20130576-20130595 | None:intergenic | 45.0% | |
| TAAGACCGACCATGTAACGT+TGG | - | chr1.1:20132706-20132725 | None:intergenic | 45.0% | |
| TCCGCATTTCCACAGAATCA+CGG | + | chr1.1:20130583-20130602 | MS.gene052888:intron | 45.0% | |
| TCTAGATTCTAGGTCCACCA+AGG | - | chr1.1:20132673-20132692 | None:intergenic | 45.0% | |
| TTCCCTTGAACCGTTCATCT+GGG | - | chr1.1:20133083-20133102 | None:intergenic | 45.0% | |
| TTGAACCGTTCATCTGGGTT+GGG | - | chr1.1:20133078-20133097 | None:intergenic | 45.0% | |
| TTGCTGATACCGGCAAATTC+AGG | - | chr1.1:20132046-20132065 | None:intergenic | 45.0% | |
| ! | CATAACTGCTAGTGATGGTG+TGG | + | chr1.1:20131678-20131697 | MS.gene052888:intron | 45.0% |
| ! | CCTTCTGTCATTTGTGCCAA+AGG | - | chr1.1:20132499-20132518 | None:intergenic | 45.0% |
| !! | CTTGGTTCTACCGAGAAATG+TGG | + | chr1.1:20131508-20131527 | MS.gene052888:intron | 45.0% |
| !! | GTGATTGGTTGCACTTTTGG+TGG | - | chr1.1:20130702-20130721 | None:intergenic | 45.0% |
| !! | AATTTAAAAGAAATATTTAA+TGG | + | chr1.1:20129579-20129598 | MS.gene052888:intron | 5.0% |
| ACAAGCCCAACCCAGATGAA+CGG | + | chr1.1:20133070-20133089 | MS.gene052888:intron | 50.0% | |
| ACATGGCTGACCACCTATTG+TGG | - | chr1.1:20132811-20132830 | None:intergenic | 50.0% | |
| ACCAAGCACCAGCACAGATA+TGG | - | chr1.1:20131494-20131513 | None:intergenic | 50.0% | |
| CAACCCAGATGAACGGTTCA+AGG | + | chr1.1:20133077-20133096 | MS.gene052888:intron | 50.0% | |
| CGCCGTTAGAACAACAACTC+CGG | - | chr1.1:20133284-20133303 | None:intergenic | 50.0% | |
| CTTGAACCGTTCATCTGGGT+TGG | - | chr1.1:20133079-20133098 | None:intergenic | 50.0% | |
| GAAATCTCGCCGTGATTCTG+TGG | - | chr1.1:20130595-20130614 | None:intergenic | 50.0% | |
| GAGTCATAGTTACCGCCCTT+TGG | + | chr1.1:20132997-20133016 | MS.gene052888:intron | 50.0% | |
| GATGAAGGGTCCTCTTCTCT+AGG | - | chr1.1:20133587-20133606 | None:intergenic | 50.0% | |
| GCCGTGATTCTGTGGAAATG+CGG | - | chr1.1:20130587-20130606 | None:intergenic | 50.0% | |
| GTGGCAGCCATAGCTCATAT+AGG | + | chr1.1:20131697-20131716 | MS.gene052888:intron | 50.0% | |
| TGTGCCAAAGGGCTTGACTA+AGG | - | chr1.1:20132487-20132506 | None:intergenic | 50.0% | |
| ! | ATCCTTAGGGCCGACTCATA+AGG | - | chr1.1:20132572-20132591 | None:intergenic | 50.0% |
| ! | CAGACTGCAGCTGCACTTTT+CGG | - | chr1.1:20131247-20131266 | None:intergenic | 50.0% |
| ! | GAGTTGTGACTTGGGGATGA+GGG | + | chr1.1:20133040-20133059 | MS.gene052888:intron | 50.0% |
| ! | TCCATATCTGTGCTGGTGCT+TGG | + | chr1.1:20131490-20131509 | MS.gene052888:intron | 50.0% |
| ! | TGAGTTGTGACTTGGGGATG+AGG | + | chr1.1:20133039-20133058 | MS.gene052888:intron | 50.0% |
| ACATGACGCAGGATCTGCAG+CGG | + | chr1.1:20132244-20132263 | MS.gene052888:CDS | 55.0% | |
| ACTCAACAAACGTTCGGGCC+TGG | - | chr1.1:20133024-20133043 | None:intergenic | 55.0% | |
| GTGCAGCTGCAGTCTGTGAT+AGG | + | chr1.1:20131251-20131270 | MS.gene052888:CDS | 55.0% | |
| TAGTTACCGCCCTTTGGTCC+AGG | + | chr1.1:20133003-20133022 | MS.gene052888:intron | 55.0% | |
| TGCCTTATGAGTCGGCCCTA+AGG | + | chr1.1:20132567-20132586 | MS.gene052888:intron | 55.0% | |
| ! | TTGTGACTTGGGGATGAGGG+TGG | + | chr1.1:20133043-20133062 | MS.gene052888:intron | 55.0% |
| AACGTTCGGGCCTGGACCAA+AGG | - | chr1.1:20133016-20133035 | None:intergenic | 60.0% | |
| ACGTTCGGGCCTGGACCAAA+GGG | - | chr1.1:20133015-20133034 | None:intergenic | 60.0% | |
| CATGACGCAGGATCTGCAGC+GGG | + | chr1.1:20132245-20132264 | MS.gene052888:CDS | 60.0% | |
| TTCGGGCCTGGACCAAAGGG+CGG | - | chr1.1:20133012-20133031 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 20129432 | 20133838 | 20129432 | ID=MS.gene052888 |
| chr1.1 | mRNA | 20129432 | 20133838 | 20129432 | ID=MS.gene052888.t1;Parent=MS.gene052888 |
| chr1.1 | exon | 20129432 | 20129434 | 20129432 | ID=MS.gene052888.t1.exon1;Parent=MS.gene052888.t1 |
| chr1.1 | CDS | 20129432 | 20129434 | 20129432 | ID=cds.MS.gene052888.t1;Parent=MS.gene052888.t1 |
| chr1.1 | exon | 20131003 | 20131058 | 20131003 | ID=MS.gene052888.t1.exon2;Parent=MS.gene052888.t1 |
| chr1.1 | CDS | 20131003 | 20131058 | 20131003 | ID=cds.MS.gene052888.t1;Parent=MS.gene052888.t1 |
| chr1.1 | exon | 20131141 | 20131371 | 20131141 | ID=MS.gene052888.t1.exon3;Parent=MS.gene052888.t1 |
| chr1.1 | CDS | 20131141 | 20131371 | 20131141 | ID=cds.MS.gene052888.t1;Parent=MS.gene052888.t1 |
| chr1.1 | exon | 20132236 | 20132524 | 20132236 | ID=MS.gene052888.t1.exon4;Parent=MS.gene052888.t1 |
| chr1.1 | CDS | 20132236 | 20132524 | 20132236 | ID=cds.MS.gene052888.t1;Parent=MS.gene052888.t1 |
| chr1.1 | exon | 20133429 | 20133625 | 20133429 | ID=MS.gene052888.t1.exon5;Parent=MS.gene052888.t1 |
| chr1.1 | CDS | 20133429 | 20133625 | 20133429 | ID=cds.MS.gene052888.t1;Parent=MS.gene052888.t1 |
| chr1.1 | exon | 20133730 | 20133838 | 20133730 | ID=MS.gene052888.t1.exon6;Parent=MS.gene052888.t1 |
| chr1.1 | CDS | 20133730 | 20133838 | 20133730 | ID=cds.MS.gene052888.t1;Parent=MS.gene052888.t1 |
| Gene Sequence |
| Protein sequence |
