Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052889.t1 | XP_013466771.1 | 98.3 | 294 | 5 | 0 | 1 | 294 | 293 | 586 | 5.40E-168 | 600.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052889.t1 | A0A072VGA5 | 98.3 | 294 | 5 | 0 | 1 | 294 | 293 | 586 | 3.9e-168 | 600.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051975 | MS.gene052889 | 0.813306 | 2.74E-51 | -1.69E-46 |
MS.gene052855 | MS.gene052889 | 0.897103 | 1.95E-76 | -1.69E-46 |
MS.gene052888 | MS.gene052889 | 0.970563 | 8.28E-132 | -1.69E-46 |
MS.gene052889 | MS.gene052890 | 0.908606 | 1.42E-81 | -1.69E-46 |
MS.gene052889 | MS.gene053963 | 0.813652 | 2.30E-51 | -1.69E-46 |
MS.gene052889 | MS.gene055513 | 0.815733 | 7.95E-52 | -1.69E-46 |
MS.gene052889 | MS.gene056986 | 0.820937 | 5.27E-53 | -1.69E-46 |
MS.gene052889 | MS.gene057102 | 0.814121 | 1.81E-51 | -1.69E-46 |
MS.gene052889 | MS.gene05985 | -0.813613 | 2.34E-51 | -1.69E-46 |
MS.gene052889 | MS.gene06011 | 0.819342 | 1.22E-52 | -1.69E-46 |
MS.gene052889 | MS.gene060365 | 0.80211 | 6.55E-49 | -1.69E-46 |
MS.gene052889 | MS.gene062512 | 0.803413 | 3.53E-49 | -1.69E-46 |
MS.gene052889 | MS.gene063247 | 0.821881 | 3.19E-53 | -1.69E-46 |
MS.gene052889 | MS.gene064969 | 0.808478 | 3.04E-50 | -1.69E-46 |
MS.gene052889 | MS.gene065069 | 0.818033 | 2.42E-52 | -1.69E-46 |
MS.gene052889 | MS.gene065072 | 0.808893 | 2.48E-50 | -1.69E-46 |
MS.gene052889 | MS.gene066513 | 0.810668 | 1.03E-50 | -1.69E-46 |
MS.gene052889 | MS.gene068350 | 0.810954 | 8.92E-51 | -1.69E-46 |
MS.gene052889 | MS.gene071987 | 0.802085 | 6.63E-49 | -1.69E-46 |
MS.gene052889 | MS.gene073028 | 0.814915 | 1.21E-51 | -1.69E-46 |
MS.gene052889 | MS.gene074100 | 0.801684 | 8.02E-49 | -1.69E-46 |
MS.gene052889 | MS.gene08336 | 0.801988 | 6.94E-49 | -1.69E-46 |
MS.gene052889 | MS.gene20554 | 0.808995 | 2.35E-50 | -1.69E-46 |
MS.gene052889 | MS.gene20886 | 0.800487 | 1.41E-48 | -1.69E-46 |
MS.gene052889 | MS.gene25991 | 0.810186 | 1.31E-50 | -1.69E-46 |
MS.gene052889 | MS.gene27134 | 0.800816 | 1.21E-48 | -1.69E-46 |
MS.gene052889 | MS.gene27516 | 0.808973 | 2.38E-50 | -1.69E-46 |
MS.gene052889 | MS.gene28918 | 0.804234 | 2.38E-49 | -1.69E-46 |
MS.gene052889 | MS.gene29036 | 0.810809 | 9.58E-51 | -1.69E-46 |
MS.gene052889 | MS.gene29096 | 0.805293 | 1.43E-49 | -1.69E-46 |
MS.gene052889 | MS.gene29428 | 0.810843 | 9.42E-51 | -1.69E-46 |
MS.gene052889 | MS.gene30663 | 0.823492 | 1.35E-53 | -1.69E-46 |
MS.gene052889 | MS.gene31856 | 0.807083 | 6.01E-50 | -1.69E-46 |
MS.gene052889 | MS.gene32801 | 0.808245 | 3.41E-50 | -1.69E-46 |
MS.gene052889 | MS.gene33650 | 0.805952 | 1.04E-49 | -1.69E-46 |
MS.gene052889 | MS.gene33651 | 0.820099 | 8.20E-53 | -1.69E-46 |
MS.gene052889 | MS.gene33991 | 0.802381 | 5.76E-49 | -1.69E-46 |
MS.gene052889 | MS.gene34340 | 0.806949 | 6.41E-50 | -1.69E-46 |
MS.gene052889 | MS.gene34950 | 0.807694 | 4.46E-50 | -1.69E-46 |
MS.gene052889 | MS.gene37570 | 0.807862 | 4.11E-50 | -1.69E-46 |
MS.gene052889 | MS.gene40608 | 0.813278 | 2.78E-51 | -1.69E-46 |
MS.gene052889 | MS.gene40709 | 0.812319 | 4.50E-51 | -1.69E-46 |
MS.gene052889 | MS.gene40711 | 0.802068 | 6.69E-49 | -1.69E-46 |
MS.gene052889 | MS.gene40918 | 0.809835 | 1.55E-50 | -1.69E-46 |
MS.gene052889 | MS.gene41678 | 0.810495 | 1.12E-50 | -1.69E-46 |
MS.gene052889 | MS.gene42295 | 0.803211 | 3.88E-49 | -1.69E-46 |
MS.gene052889 | MS.gene47195 | 0.808392 | 3.17E-50 | -1.69E-46 |
MS.gene052889 | MS.gene47822 | 0.81067 | 1.03E-50 | -1.69E-46 |
MS.gene052889 | MS.gene48037 | 0.820491 | 6.67E-53 | -1.69E-46 |
MS.gene052889 | MS.gene48841 | 0.807969 | 3.90E-50 | -1.69E-46 |
MS.gene052889 | MS.gene51957 | 0.805084 | 1.58E-49 | -1.69E-46 |
MS.gene052889 | MS.gene54377 | 0.806638 | 7.46E-50 | -1.69E-46 |
MS.gene052889 | MS.gene54380 | 0.808424 | 3.12E-50 | -1.69E-46 |
MS.gene052889 | MS.gene55545 | 0.802037 | 6.78E-49 | -1.69E-46 |
MS.gene052889 | MS.gene55653 | 0.802648 | 5.08E-49 | -1.69E-46 |
MS.gene052889 | MS.gene57128 | 0.805951 | 1.04E-49 | -1.69E-46 |
MS.gene052889 | MS.gene57783 | 0.803837 | 2.88E-49 | -1.69E-46 |
MS.gene052889 | MS.gene58467 | 0.810204 | 1.29E-50 | -1.69E-46 |
MS.gene052889 | MS.gene58719 | 0.805373 | 1.38E-49 | -1.69E-46 |
MS.gene052889 | MS.gene61257 | 0.803161 | 3.98E-49 | -1.69E-46 |
MS.gene052889 | MS.gene61288 | 0.808135 | 3.59E-50 | -1.69E-46 |
MS.gene052889 | MS.gene62676 | 0.818364 | 2.04E-52 | -1.69E-46 |
MS.gene052889 | MS.gene62677 | 0.831298 | 1.81E-55 | -1.69E-46 |
MS.gene052889 | MS.gene64284 | 0.812742 | 3.64E-51 | -1.69E-46 |
MS.gene052889 | MS.gene67485 | 0.812943 | 3.29E-51 | -1.69E-46 |
MS.gene052889 | MS.gene70154 | 0.828975 | 6.67E-55 | -1.69E-46 |
MS.gene052889 | MS.gene70282 | 0.824992 | 5.98E-54 | -1.69E-46 |
MS.gene052889 | MS.gene70656 | 0.819069 | 1.41E-52 | -1.69E-46 |
MS.gene052889 | MS.gene71945 | 0.827545 | 1.47E-54 | -1.69E-46 |
MS.gene052889 | MS.gene72376 | 0.83541 | 1.71E-56 | -1.69E-46 |
MS.gene052889 | MS.gene73678 | 0.808533 | 2.96E-50 | -1.69E-46 |
MS.gene052889 | MS.gene73885 | 0.800712 | 1.27E-48 | -1.69E-46 |
MS.gene052889 | MS.gene74604 | 0.81474 | 1.32E-51 | -1.69E-46 |
MS.gene052889 | MS.gene75605 | 0.803791 | 2.95E-49 | -1.69E-46 |
MS.gene052889 | MS.gene75781 | 0.80126 | 9.79E-49 | -1.69E-46 |
MS.gene052889 | MS.gene76244 | 0.81661 | 5.06E-52 | -1.69E-46 |
MS.gene052889 | MS.gene76248 | 0.803368 | 3.60E-49 | -1.69E-46 |
MS.gene052889 | MS.gene76374 | 0.800005 | 1.77E-48 | -1.69E-46 |
MS.gene052889 | MS.gene78642 | 0.800894 | 1.16E-48 | -1.69E-46 |
MS.gene052889 | MS.gene80631 | 0.816902 | 4.35E-52 | -1.69E-46 |
MS.gene052889 | MS.gene82269 | 0.805054 | 1.61E-49 | -1.69E-46 |
MS.gene052889 | MS.gene82704 | 0.801915 | 7.19E-49 | -1.69E-46 |
MS.gene052889 | MS.gene85936 | 0.804232 | 2.38E-49 | -1.69E-46 |
MS.gene052889 | MS.gene85978 | 0.818508 | 1.89E-52 | -1.69E-46 |
MS.gene052889 | MS.gene85979 | 0.801345 | 9.41E-49 | -1.69E-46 |
MS.gene052889 | MS.gene86919 | 0.802571 | 5.27E-49 | -1.69E-46 |
MS.gene052889 | MS.gene87673 | 0.822458 | 2.34E-53 | -1.69E-46 |
MS.gene052889 | MS.gene87922 | 0.803978 | 2.69E-49 | -1.69E-46 |
MS.gene052889 | MS.gene88351 | 0.808349 | 3.23E-50 | -1.69E-46 |
MS.gene052889 | MS.gene89712 | 0.814289 | 1.66E-51 | -1.69E-46 |
MS.gene052889 | MS.gene92320 | 0.800974 | 1.12E-48 | -1.69E-46 |
MS.gene052889 | MS.gene92364 | 0.800983 | 1.12E-48 | -1.69E-46 |
MS.gene052889 | MS.gene92775 | 0.807359 | 5.25E-50 | -1.69E-46 |
MS.gene052889 | MS.gene93155 | 0.82671 | 2.34E-54 | -1.69E-46 |
MS.gene052889 | MS.gene94111 | 0.813877 | 2.05E-51 | -1.69E-46 |
MS.gene052889 | MS.gene94674 | 0.815939 | 7.15E-52 | -1.69E-46 |
MS.gene052889 | MS.gene94906 | 0.801362 | 9.33E-49 | -1.69E-46 |
MS.gene052889 | MS.gene95655 | 0.806851 | 6.73E-50 | -1.69E-46 |
MS.gene052889 | MS.gene97613 | 0.81036 | 1.20E-50 | -1.69E-46 |
MS.gene052889 | MS.gene99894 | 0.843938 | 1.03E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052889.t1 | MTR_1g035690 | 98.299 | 294 | 5 | 0 | 1 | 294 | 293 | 586 | 0.0 | 610 |
MS.gene052889.t1 | MTR_8g033290 | 75.170 | 294 | 72 | 1 | 1 | 293 | 315 | 608 | 4.01e-165 | 473 |
MS.gene052889.t1 | MTR_3g073590 | 47.440 | 293 | 151 | 3 | 1 | 290 | 493 | 785 | 4.29e-87 | 276 |
MS.gene052889.t1 | MTR_5g061340 | 46.758 | 293 | 153 | 3 | 1 | 290 | 666 | 958 | 5.91e-84 | 271 |
MS.gene052889.t1 | MTR_5g018820 | 34.437 | 151 | 91 | 2 | 94 | 236 | 395 | 545 | 2.21e-19 | 88.6 |
MS.gene052889.t1 | MTR_8g078760 | 34.706 | 170 | 99 | 4 | 104 | 264 | 408 | 574 | 3.74e-19 | 87.8 |
MS.gene052889.t1 | MTR_5g012790 | 26.613 | 248 | 158 | 10 | 46 | 278 | 309 | 547 | 5.86e-17 | 81.3 |
MS.gene052889.t1 | MTR_4g068920 | 31.818 | 154 | 97 | 3 | 94 | 239 | 405 | 558 | 6.02e-17 | 81.3 |
MS.gene052889.t1 | MTR_8g078760 | 32.824 | 131 | 80 | 2 | 94 | 216 | 398 | 528 | 7.99e-13 | 68.9 |
MS.gene052889.t1 | MTR_4g058015 | 26.768 | 198 | 122 | 6 | 94 | 277 | 461 | 649 | 2.94e-12 | 67.4 |
MS.gene052889.t1 | MTR_3g101340 | 27.660 | 188 | 110 | 7 | 100 | 273 | 321 | 496 | 4.35e-12 | 66.6 |
MS.gene052889.t1 | MTR_3g101340 | 27.660 | 188 | 110 | 7 | 100 | 273 | 347 | 522 | 4.50e-12 | 66.6 |
MS.gene052889.t1 | MTR_8g079840 | 28.962 | 183 | 106 | 8 | 104 | 273 | 383 | 554 | 3.08e-11 | 64.3 |
MS.gene052889.t1 | MTR_3g101340 | 26.531 | 196 | 110 | 7 | 100 | 273 | 346 | 529 | 4.64e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052889.t1 | AT3G11920 | 63.051 | 295 | 107 | 2 | 1 | 293 | 320 | 614 | 1.56e-134 | 395 |
MS.gene052889.t1 | AT4G08550 | 42.857 | 294 | 165 | 3 | 1 | 291 | 382 | 675 | 3.70e-75 | 243 |
MS.gene052889.t1 | AT4G08550 | 42.917 | 240 | 135 | 2 | 54 | 291 | 382 | 621 | 2.46e-60 | 202 |
MS.gene052889.t1 | AT1G16750 | 31.707 | 205 | 125 | 6 | 91 | 285 | 295 | 494 | 3.88e-21 | 93.6 |
MS.gene052889.t1 | AT3G13000 | 30.085 | 236 | 130 | 7 | 74 | 291 | 303 | 521 | 1.54e-20 | 92.0 |
MS.gene052889.t1 | AT3G13000 | 30.085 | 236 | 130 | 7 | 74 | 291 | 332 | 550 | 1.66e-20 | 91.7 |
MS.gene052889.t1 | AT3G13000 | 30.085 | 236 | 130 | 7 | 74 | 291 | 332 | 550 | 1.66e-20 | 91.7 |
MS.gene052889.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 94 | 264 | 331 | 505 | 8.67e-19 | 86.7 |
MS.gene052889.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 94 | 264 | 365 | 539 | 9.10e-19 | 86.7 |
MS.gene052889.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 94 | 264 | 385 | 559 | 1.01e-18 | 86.7 |
MS.gene052889.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 94 | 264 | 385 | 559 | 1.01e-18 | 86.7 |
MS.gene052889.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 94 | 264 | 385 | 559 | 1.01e-18 | 86.7 |
MS.gene052889.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 94 | 264 | 385 | 559 | 1.01e-18 | 86.7 |
MS.gene052889.t1 | AT5G66600 | 28.652 | 178 | 117 | 3 | 94 | 264 | 385 | 559 | 1.01e-18 | 86.7 |
MS.gene052889.t1 | AT2G23700 | 32.778 | 180 | 106 | 5 | 95 | 264 | 479 | 653 | 1.11e-17 | 83.6 |
MS.gene052889.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 94 | 273 | 290 | 469 | 1.41e-16 | 80.1 |
MS.gene052889.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 94 | 273 | 265 | 444 | 1.52e-16 | 80.1 |
MS.gene052889.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 94 | 273 | 316 | 495 | 1.78e-16 | 79.7 |
MS.gene052889.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 94 | 273 | 317 | 496 | 1.80e-16 | 79.7 |
MS.gene052889.t1 | AT5G42690 | 30.851 | 188 | 114 | 6 | 94 | 273 | 317 | 496 | 1.80e-16 | 79.7 |
MS.gene052889.t1 | AT1G43020 | 29.775 | 178 | 115 | 2 | 84 | 254 | 202 | 376 | 3.49e-14 | 72.8 |
MS.gene052889.t1 | AT5G47380 | 25.820 | 244 | 163 | 8 | 62 | 294 | 328 | 564 | 3.60e-14 | 73.2 |
MS.gene052889.t1 | AT5G47380 | 25.820 | 244 | 163 | 8 | 62 | 294 | 328 | 564 | 3.80e-14 | 73.2 |
MS.gene052889.t1 | AT5G47380 | 25.820 | 244 | 163 | 8 | 62 | 294 | 272 | 508 | 3.89e-14 | 72.8 |
MS.gene052889.t1 | AT3G18900 | 30.625 | 160 | 99 | 4 | 94 | 244 | 228 | 384 | 9.59e-14 | 71.6 |
MS.gene052889.t1 | AT3G18900 | 30.625 | 160 | 99 | 4 | 94 | 244 | 228 | 384 | 9.59e-14 | 71.6 |
MS.gene052889.t1 | AT3G18900 | 30.625 | 160 | 99 | 4 | 94 | 244 | 304 | 460 | 1.14e-13 | 71.6 |
MS.gene052889.t1 | AT3G18900 | 30.625 | 160 | 99 | 4 | 94 | 244 | 309 | 465 | 1.25e-13 | 71.2 |
MS.gene052889.t1 | AT4G37080 | 30.508 | 177 | 111 | 6 | 104 | 273 | 383 | 554 | 3.97e-13 | 70.1 |
MS.gene052889.t1 | AT4G37080 | 30.508 | 177 | 111 | 6 | 104 | 273 | 396 | 567 | 4.32e-13 | 69.7 |
MS.gene052889.t1 | AT4G37080 | 30.508 | 177 | 111 | 6 | 104 | 273 | 396 | 567 | 4.32e-13 | 69.7 |
MS.gene052889.t1 | AT5G60720 | 30.303 | 198 | 109 | 7 | 100 | 277 | 460 | 648 | 1.17e-12 | 68.6 |
MS.gene052889.t1 | AT1G16750 | 46.154 | 78 | 37 | 2 | 91 | 165 | 295 | 370 | 1.92e-12 | 67.4 |
MS.gene052889.t1 | AT1G76620 | 28.571 | 182 | 114 | 6 | 94 | 264 | 293 | 469 | 2.14e-12 | 67.8 |
MS.gene052889.t1 | AT5G66600 | 31.538 | 130 | 82 | 2 | 94 | 216 | 385 | 514 | 2.22e-12 | 67.4 |
MS.gene052889.t1 | AT5G66600 | 31.538 | 130 | 82 | 2 | 94 | 216 | 385 | 514 | 2.22e-12 | 67.4 |
MS.gene052889.t1 | AT5G66600 | 31.538 | 130 | 82 | 2 | 94 | 216 | 385 | 514 | 2.22e-12 | 67.4 |
MS.gene052889.t1 | AT5G66600 | 31.538 | 130 | 82 | 2 | 94 | 216 | 385 | 514 | 2.22e-12 | 67.4 |
Find 0 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TACATTTTTAAAAAGTAAAA+GGG | - | 11075:2778-2797 | MS.gene052889:intergenic | 10.0% |
!!! | TTACATTTTTAAAAAGTAAA+AGG | - | 11075:2779-2798 | MS.gene052889:intergenic | 10.0% |
!! | ATATAATGAAAAAACATGTT+TGG | + | 11075:2913-2932 | MS.gene052889:intron | 15.0% |
!! | CTATTACTTAAAAAACATAT+TGG | - | 11075:1235-1254 | MS.gene052889:intergenic | 15.0% |
!! | TAGTAATTTATATTATTTGC+AGG | + | 11075:3847-3866 | MS.gene052889:intron | 15.0% |
!!! | AACACTAGTTTAATTTTATT+TGG | - | 11075:3086-3105 | MS.gene052889:intergenic | 15.0% |
!!! | AATGTAATAATTTTTTTCCT+TGG | + | 11075:2792-2811 | MS.gene052889:intron | 15.0% |
!!! | ATTTTCTTTAAAAAGAATAG+AGG | - | 11075:2161-2180 | MS.gene052889:intergenic | 15.0% |
!!! | TGTGTTTCAATATTAAATTT+TGG | + | 11075:2673-2692 | MS.gene052889:intron | 15.0% |
!! | AAAAAATATAAGTTGCAAAC+TGG | - | 11075:2040-2059 | MS.gene052889:intergenic | 20.0% |
!! | AAAATGGATAATGAATTACT+TGG | + | 11075:3905-3924 | MS.gene052889:CDS | 20.0% |
!! | ATGAATATACGAAAAACAAA+AGG | - | 11075:3391-3410 | MS.gene052889:intergenic | 20.0% |
!! | ATTATATAATACATGTCGAA+AGG | - | 11075:2247-2266 | MS.gene052889:intergenic | 20.0% |
!! | TAACTAAAATTCTAGATTCT+AGG | - | 11075:2822-2841 | MS.gene052889:intergenic | 20.0% |
!! | TACAAGAAGAAAATTAATCA+AGG | - | 11075:1259-1278 | MS.gene052889:intergenic | 20.0% |
!! | TGAATATACGAAAAACAAAA+GGG | - | 11075:3390-3409 | MS.gene052889:intergenic | 20.0% |
!! | TTATATAATACATGTCGAAA+GGG | - | 11075:2246-2265 | MS.gene052889:intergenic | 20.0% |
!!! | TGATTAATTTTCTTCTTGTA+GGG | + | 11075:1259-1278 | MS.gene052889:intron | 20.0% |
!!! | TTGAAACATTTTGAGATAAA+CGG | - | 11075:1335-1354 | MS.gene052889:intergenic | 20.0% |
!!! | TTGATTAATTTTCTTCTTGT+AGG | + | 11075:1258-1277 | MS.gene052889:intron | 20.0% |
!!! | TTTTTTGGTAATCAAGTTAT+TGG | - | 11075:3015-3034 | MS.gene052889:intergenic | 20.0% |
! | AAATAGTTATCGCACTTTAT+GGG | - | 11075:3472-3491 | MS.gene052889:intergenic | 25.0% |
! | AATCTTTCTCAAAATCCTTA+GGG | - | 11075:2724-2743 | MS.gene052889:intergenic | 25.0% |
! | AATGAAAAAACATGTTTGGA+AGG | + | 11075:2917-2936 | MS.gene052889:intron | 25.0% |
! | ATGAAAAAACATGTTTGGAA+GGG | + | 11075:2918-2937 | MS.gene052889:intron | 25.0% |
! | ATGAAAGAAATGTGGTAAAA+TGG | + | 11075:3889-3908 | MS.gene052889:CDS | 25.0% |
! | CAAGTTAGAACTAACATATA+AGG | - | 11075:1712-1731 | MS.gene052889:intergenic | 25.0% |
! | CTTAATTACCACTTCAAAAT+TGG | - | 11075:3754-3773 | MS.gene052889:intergenic | 25.0% |
! | GGTCAATTATAGTAATTCAA+GGG | - | 11075:3065-3084 | MS.gene052889:intergenic | 25.0% |
! | GTAAATCTTATTGTCTATCA+CGG | + | 11075:1519-1538 | MS.gene052889:intron | 25.0% |
! | GTATATTCATTCTATTGAAC+CGG | + | 11075:3401-3420 | MS.gene052889:intron | 25.0% |
! | TAACTTGATTACCAAAAAAC+AGG | + | 11075:3016-3035 | MS.gene052889:intron | 25.0% |
! | TAATTGCATGAAGCTAAATT+TGG | - | 11075:1933-1952 | MS.gene052889:intergenic | 25.0% |
! | TCTCAAAATGTTTCAATTTC+CGG | + | 11075:1339-1358 | MS.gene052889:CDS | 25.0% |
! | TGGTCAATTATAGTAATTCA+AGG | - | 11075:3066-3085 | MS.gene052889:intergenic | 25.0% |
!! | ACATTCTGCTATTGATAATA+TGG | + | 11075:3503-3522 | MS.gene052889:intron | 25.0% |
!! | ATTTCATTCAAGTTTAGCTT+AGG | - | 11075:2291-2310 | MS.gene052889:intergenic | 25.0% |
!! | GTGAGTCAACTAAAATTTTA+GGG | - | 11075:3043-3062 | MS.gene052889:intergenic | 25.0% |
!!! | AAAGTGATTTTTCAAAATGC+AGG | + | 11075:2353-2372 | MS.gene052889:intron | 25.0% |
!!! | ATTTTGTTACTTCTGATATG+AGG | + | 11075:2315-2334 | MS.gene052889:intron | 25.0% |
!!! | GTAATAATTTTTTTCCTTGG+TGG | + | 11075:2795-2814 | MS.gene052889:intron | 25.0% |
!!! | TTTTGGAAATGAAAGAAATG+TGG | + | 11075:3881-3900 | MS.gene052889:CDS | 25.0% |
AAAGAAATGCAGAGAATAAC+AGG | + | 11075:1782-1801 | MS.gene052889:intron | 30.0% | |
AAATCTCAGACCTTACTTAA+GGG | - | 11075:2886-2905 | MS.gene052889:intergenic | 30.0% | |
AAGAAAATACCTGAATTTGC+CGG | + | 11075:2173-2192 | MS.gene052889:intron | 30.0% | |
AATGTGGATGAATGAAATGA+AGG | + | 11075:1663-1682 | MS.gene052889:intron | 30.0% | |
AGGTTTCAAAAGTAGGTTAT+AGG | - | 11075:2222-2241 | MS.gene052889:intergenic | 30.0% | |
ATGAATCCTTTGATTCACTT+TGG | + | 11075:3583-3602 | MS.gene052889:CDS | 30.0% | |
ATGTGGATGAATGAAATGAA+GGG | + | 11075:1664-1683 | MS.gene052889:intron | 30.0% | |
ATTCACTTTGGACTTTGTAA+TGG | + | 11075:3595-3614 | MS.gene052889:CDS | 30.0% | |
CAATCTTTCTCAAAATCCTT+AGG | - | 11075:2725-2744 | MS.gene052889:intergenic | 30.0% | |
CTCAAAATGTTTCAATTTCC+GGG | + | 11075:1340-1359 | MS.gene052889:CDS | 30.0% | |
GAAATAGTTATCGCACTTTA+TGG | - | 11075:3473-3492 | MS.gene052889:intergenic | 30.0% | |
TCAAAATGTTTCAATTTCCG+GGG | + | 11075:1341-1360 | MS.gene052889:CDS | 30.0% | |
TCAACTCACAGAAAATTTGA+AGG | - | 11075:3112-3131 | MS.gene052889:intergenic | 30.0% | |
TCAGCAAAAGTGAAGAATTT+AGG | + | 11075:1486-1505 | MS.gene052889:CDS | 30.0% | |
TCTGATTTCCAGTATTTGAT+TGG | + | 11075:2532-2551 | MS.gene052889:CDS | 30.0% | |
TGAAAAAACATGTTTGGAAG+GGG | + | 11075:2919-2938 | MS.gene052889:intron | 30.0% | |
TTCAAGGGAATGTTATAATC+TGG | + | 11075:3232-3251 | MS.gene052889:intron | 30.0% | |
TTTCATTCATCCACATTTCT+CGG | - | 11075:1660-1679 | MS.gene052889:intergenic | 30.0% | |
! | AACATATTGGTAGCTTTCTT+TGG | - | 11075:1222-1241 | MS.gene052889:intergenic | 30.0% |
! | GGTGAGTCAACTAAAATTTT+AGG | - | 11075:3044-3063 | MS.gene052889:intergenic | 30.0% |
! | TTATTTTCTTACCCGAAAAC+AGG | - | 11075:1190-1209 | MS.gene052889:intergenic | 30.0% |
! | TTTTCTTCTTGTAGGGAAAA+TGG | + | 11075:1266-1285 | MS.gene052889:intron | 30.0% |
!! | AAATTCTTCACTTTTGCTGA+TGG | - | 11075:1486-1505 | MS.gene052889:intergenic | 30.0% |
!! | GTGAAAAAAACCTCACTTTT+GGG | - | 11075:3633-3652 | MS.gene052889:intergenic | 30.0% |
!! | TTTTAGTTACCAACGTTACA+TGG | + | 11075:2833-2852 | MS.gene052889:intron | 30.0% |
!!! | AATTTTAGGGTCCTGTTTTT+TGG | - | 11075:3030-3049 | MS.gene052889:intergenic | 30.0% |
AAAGGGAAATACACGATGTT+TGG | - | 11075:3373-3392 | MS.gene052889:intergenic | 35.0% | |
AAAGGGAAGGTTTCAAAAGT+AGG | - | 11075:2229-2248 | MS.gene052889:intergenic | 35.0% | |
AAGAACCTTATTGCTGATAC+CGG | - | 11075:2195-2214 | MS.gene052889:intergenic | 35.0% | |
AGATAAACGGTTCATGTTCA+AGG | - | 11075:1322-1341 | MS.gene052889:intergenic | 35.0% | |
AGGGAATGTTATAATCTGGA+CGG | + | 11075:3236-3255 | MS.gene052889:intron | 35.0% | |
AGTGAAGAATTTAGGAGGTA+TGG | + | 11075:1494-1513 | MS.gene052889:intron | 35.0% | |
ATAAGAGTAGGATGTCAAGA+AGG | + | 11075:2487-2506 | MS.gene052889:CDS | 35.0% | |
ATAATACATGTCGAAAGGGA+AGG | - | 11075:2242-2261 | MS.gene052889:intergenic | 35.0% | |
ATCCATGCTATGATAAGAGT+AGG | + | 11075:2475-2494 | MS.gene052889:CDS | 35.0% | |
ATCCTACTCTTATCATAGCA+TGG | - | 11075:2480-2499 | MS.gene052889:intergenic | 35.0% | |
CAAAATTGGAGTGAGATGAA+GGG | - | 11075:3740-3759 | MS.gene052889:intergenic | 35.0% | |
CAAACTACCTATATGAGCTA+TGG | - | 11075:1846-1865 | MS.gene052889:intergenic | 35.0% | |
CAAAGTCCAAAGTGAATCAA+AGG | - | 11075:3592-3611 | MS.gene052889:intergenic | 35.0% | |
CAAATACTGGAAATCAGAGA+AGG | - | 11075:2530-2549 | MS.gene052889:intergenic | 35.0% | |
CAAATCTCAGACCTTACTTA+AGG | - | 11075:2887-2906 | MS.gene052889:intergenic | 35.0% | |
CGTGTAGTGAAAACTAAGAT+TGG | - | 11075:2086-2105 | MS.gene052889:intergenic | 35.0% | |
CTAATCTCTGTCAGAAAACA+TGG | - | 11075:2967-2986 | MS.gene052889:intergenic | 35.0% | |
CTTAAACTTGTACAATGCCA+TGG | + | 11075:2450-2469 | MS.gene052889:CDS | 35.0% | |
GAGGATACCATTTGTAATAG+TGG | - | 11075:2578-2597 | MS.gene052889:intergenic | 35.0% | |
GATTTCCAGTATTTGATTGG+AGG | + | 11075:2535-2554 | MS.gene052889:CDS | 35.0% | |
GCAAAAGTGAAGAATTTAGG+AGG | + | 11075:1489-1508 | MS.gene052889:CDS | 35.0% | |
GCTATGTATAGAACATGTCA+AGG | + | 11075:1744-1763 | MS.gene052889:intron | 35.0% | |
GGACTTAAATCCCTTAAGTA+AGG | + | 11075:2873-2892 | MS.gene052889:intron | 35.0% | |
GTAATAGTGGCAAGAGAATA+AGG | - | 11075:2565-2584 | MS.gene052889:intergenic | 35.0% | |
TACTTGGATGCAAATAAAGC+TGG | + | 11075:3921-3940 | MS.gene052889:CDS | 35.0% | |
TATGGACATTGAATACGAGA+CGG | - | 11075:1615-1634 | MS.gene052889:intergenic | 35.0% | |
TCAAAATTGGAGTGAGATGA+AGG | - | 11075:3741-3760 | MS.gene052889:intergenic | 35.0% | |
TCTCTTGCCACTATTACAAA+TGG | + | 11075:2568-2587 | MS.gene052889:CDS | 35.0% | |
TTACACGTTAGTGTCACATA+CGG | + | 11075:1981-2000 | MS.gene052889:intron | 35.0% | |
! | ACATTTGTTGCCTTATGAGT+CGG | + | 11075:2698-2717 | MS.gene052889:intron | 35.0% |
! | AGAAGCATAAGACTCAAGTA+TGG | - | 11075:1435-1454 | MS.gene052889:intergenic | 35.0% |
! | AGATAGTGACTTGTGTTTCA+AGG | - | 11075:1892-1911 | MS.gene052889:intergenic | 35.0% |
! | AGTCTTATGCTTCTGAAGAT+AGG | + | 11075:1441-1460 | MS.gene052889:CDS | 35.0% |
! | CGATGTTTGGTAACAAAGTT+TGG | - | 11075:3360-3379 | MS.gene052889:intergenic | 35.0% |
! | GGTGAAAAAAACCTCACTTT+TGG | - | 11075:3634-3653 | MS.gene052889:intergenic | 35.0% |
! | GTCAAGAAGGTGTAATCAAT+AGG | + | 11075:2500-2519 | MS.gene052889:CDS | 35.0% |
! | TAGGAGACATGTTGATTATG+TGG | + | 11075:1460-1479 | MS.gene052889:CDS | 35.0% |
!! | ATCTCACTCCAATTTTGAAG+TGG | + | 11075:3743-3762 | MS.gene052889:CDS | 35.0% |
!! | GGGGAATGAATGTTTGATTT+TGG | + | 11075:2109-2128 | MS.gene052889:intron | 35.0% |
!! | TTAGTTTTCACTACACGACT+GGG | + | 11075:2089-2108 | MS.gene052889:intron | 35.0% |
!! | TTGTAGGGAAAATGGTTTTG+AGG | + | 11075:1274-1293 | MS.gene052889:intron | 35.0% |
AACTCTTCAGCAACTCTACA+AGG | - | 11075:3655-3674 | MS.gene052889:intergenic | 40.0% | |
AAGGGCTTGACTAAGGAATA+AGG | - | 11075:2619-2638 | MS.gene052889:intergenic | 40.0% | |
ACTGTCATAACTGCTAGTGA+TGG | + | 11075:1812-1831 | MS.gene052889:intron | 40.0% | |
AGAGAGTTCTTAGAGGATGA+TGG | + | 11075:3688-3707 | MS.gene052889:CDS | 40.0% | |
AGTTACCAACGTTACATGGT+CGG | + | 11075:2837-2856 | MS.gene052889:intron | 40.0% | |
ATTTGCCGGTATCAGCAATA+AGG | + | 11075:2187-2206 | MS.gene052889:intron | 40.0% | |
CACTAGCAGTTATGACAGTT+AGG | - | 11075:1811-1830 | MS.gene052889:intergenic | 40.0% | |
CTAAATCAAGCCCAAAAGTG+AGG | + | 11075:3620-3639 | MS.gene052889:CDS | 40.0% | |
GATGTCCTCCAATCAAATAC+TGG | - | 11075:2543-2562 | MS.gene052889:intergenic | 40.0% | |
GCATGAAGCTAAATTTGGCA+TGG | - | 11075:1928-1947 | MS.gene052889:intergenic | 40.0% | |
GGTATCAGCAATAAGGTTCT+TGG | + | 11075:2194-2213 | MS.gene052889:intron | 40.0% | |
GTCACAACTCAACAAACGTT+CGG | - | 11075:3169-3188 | MS.gene052889:intergenic | 40.0% | |
TATCATAGCATGGATGACCA+TGG | - | 11075:2470-2489 | MS.gene052889:intergenic | 40.0% | |
TATTCCTTAGTCAAGCCCTT+TGG | + | 11075:2619-2638 | MS.gene052889:CDS | 40.0% | |
TCACAACTCAACAAACGTTC+GGG | - | 11075:3168-3187 | MS.gene052889:intergenic | 40.0% | |
TGCAACTAGAGAGTTCTTAG+AGG | + | 11075:3681-3700 | MS.gene052889:CDS | 40.0% | |
TTCAATGTCCATATCTGTGC+TGG | + | 11075:1622-1641 | MS.gene052889:intron | 40.0% | |
TTGAAGTTGACCTAGAGAAG+AGG | + | 11075:3713-3732 | MS.gene052889:CDS | 40.0% | |
TTGACACATCTCTTAGCTGA+TGG | + | 11075:3948-3967 | MS.gene052889:CDS | 40.0% | |
TTTCTTACCCGAAAACAGGA+TGG | - | 11075:1186-1205 | MS.gene052889:intergenic | 40.0% | |
! | AACCGGAGTTGTTGTTCTAA+CGG | + | 11075:3418-3437 | MS.gene052889:intron | 40.0% |
! | ACGTTTGTTGAGTTGTGACT+TGG | + | 11075:3170-3189 | MS.gene052889:intron | 40.0% |
! | ACTTCATCCATCCTGTTTTC+GGG | + | 11075:1176-1195 | MS.gene052889:CDS | 40.0% |
! | CACTTCATCCATCCTGTTTT+CGG | + | 11075:1175-1194 | MS.gene052889:CDS | 40.0% |
! | CGTTTGTTGAGTTGTGACTT+GGG | + | 11075:3171-3190 | MS.gene052889:intron | 40.0% |
! | CTTCTGTCATTTGTGCCAAA+GGG | - | 11075:2637-2656 | MS.gene052889:intergenic | 40.0% |
! | GTTTGTTGAGTTGTGACTTG+GGG | + | 11075:3172-3191 | MS.gene052889:intron | 40.0% |
! | TAGTTTTCACTACACGACTG+GGG | + | 11075:2090-2109 | MS.gene052889:intron | 40.0% |
!! | CTTAGTTTTCACTACACGAC+TGG | + | 11075:2088-2107 | MS.gene052889:intron | 40.0% |
!!! | AGGGAAAATGGTTTTGAGGA+GGG | + | 11075:1278-1297 | MS.gene052889:intron | 40.0% |
!!! | TAGGGAAAATGGTTTTGAGG+AGG | + | 11075:1277-1296 | MS.gene052889:intron | 40.0% |
!!! | TGCAGGTACAGTGTTGATTT+TGG | + | 11075:3864-3883 | MS.gene052889:intron | 40.0% |
AACCCAGATGAACGGTTCAA+GGG | + | 11075:3217-3236 | MS.gene052889:intron | 45.0% | |
ACACATCTCTTAGCTGATGG+TGG | + | 11075:3951-3970 | MS.gene052889:CDS | 45.0% | |
AGGGGAAATTCCACAATAGG+TGG | + | 11075:2937-2956 | MS.gene052889:intron | 45.0% | |
AGTAAAAGGGTCATGCATGC+AGG | - | 11075:2765-2784 | MS.gene052889:intergenic | 45.0% | |
ATGGTCGGTCTTACTAGAAC+TGG | + | 11075:2852-2871 | MS.gene052889:intron | 45.0% | |
ATGTCAAGGTGCACGATACA+AGG | + | 11075:1758-1777 | MS.gene052889:intron | 45.0% | |
ATTCCCTTGAACCGTTCATC+TGG | - | 11075:3223-3242 | MS.gene052889:intergenic | 45.0% | |
CACAAATGACAGAAGGCTAG+AGG | + | 11075:2642-2661 | MS.gene052889:CDS | 45.0% | |
CACTATCATTTGTAGCACCC+CGG | - | 11075:1361-1380 | MS.gene052889:intergenic | 45.0% | |
CAGGTATGTAAACATGACGC+AGG | + | 11075:2372-2391 | MS.gene052889:intron | 45.0% | |
CCTTTGGCACAAATGACAGA+AGG | + | 11075:2635-2654 | MS.gene052889:CDS | 45.0% | |
GGAAGGGGAAATTCCACAAT+AGG | + | 11075:2934-2953 | MS.gene052889:intron | 45.0% | |
GTGATCTTCGATTGCTTCTG+AGG | - | 11075:2597-2616 | MS.gene052889:intergenic | 45.0% | |
TAAGACCGACCATGTAACGT+TGG | - | 11075:2845-2864 | MS.gene052889:intergenic | 45.0% | |
TCTAGATTCTAGGTCCACCA+AGG | - | 11075:2812-2831 | MS.gene052889:intergenic | 45.0% | |
TTCCCTTGAACCGTTCATCT+GGG | - | 11075:3222-3241 | MS.gene052889:intergenic | 45.0% | |
TTGAACCGTTCATCTGGGTT+GGG | - | 11075:3217-3236 | MS.gene052889:intergenic | 45.0% | |
TTGCTGATACCGGCAAATTC+AGG | - | 11075:2185-2204 | MS.gene052889:intergenic | 45.0% | |
! | CATAACTGCTAGTGATGGTG+TGG | + | 11075:1817-1836 | MS.gene052889:intron | 45.0% |
! | CCTTCTGTCATTTGTGCCAA+AGG | - | 11075:2638-2657 | MS.gene052889:intergenic | 45.0% |
! | TGTTTTCCAACCTCAACAGC+AGG | - | 11075:1142-1161 | MS.gene052889:intergenic | 45.0% |
!! | CTTGGTTCTACCGAGAAATG+TGG | + | 11075:1647-1666 | MS.gene052889:intron | 45.0% |
ACAAGCCCAACCCAGATGAA+CGG | + | 11075:3209-3228 | MS.gene052889:intron | 50.0% | |
ACATGGCTGACCACCTATTG+TGG | - | 11075:2950-2969 | MS.gene052889:intergenic | 50.0% | |
ACCAAGCACCAGCACAGATA+TGG | - | 11075:1633-1652 | MS.gene052889:intergenic | 50.0% | |
CAACCCAGATGAACGGTTCA+AGG | + | 11075:3216-3235 | MS.gene052889:intron | 50.0% | |
CGCCGTTAGAACAACAACTC+CGG | - | 11075:3423-3442 | MS.gene052889:intergenic | 50.0% | |
CTTGAACCGTTCATCTGGGT+TGG | - | 11075:3218-3237 | MS.gene052889:intergenic | 50.0% | |
GAGTCATAGTTACCGCCCTT+TGG | + | 11075:3136-3155 | MS.gene052889:intron | 50.0% | |
GATGAAGGGTCCTCTTCTCT+AGG | - | 11075:3726-3745 | MS.gene052889:intergenic | 50.0% | |
GTGGCAGCCATAGCTCATAT+AGG | + | 11075:1836-1855 | MS.gene052889:intron | 50.0% | |
TGTGCCAAAGGGCTTGACTA+AGG | - | 11075:2626-2645 | MS.gene052889:intergenic | 50.0% | |
! | ATCCTTAGGGCCGACTCATA+AGG | - | 11075:2711-2730 | MS.gene052889:intergenic | 50.0% |
! | CAGACTGCAGCTGCACTTTT+CGG | - | 11075:1386-1405 | MS.gene052889:intergenic | 50.0% |
! | GAGTTGTGACTTGGGGATGA+GGG | + | 11075:3179-3198 | MS.gene052889:intron | 50.0% |
! | TCCATATCTGTGCTGGTGCT+TGG | + | 11075:1629-1648 | MS.gene052889:intron | 50.0% |
! | TGAGTTGTGACTTGGGGATG+AGG | + | 11075:3178-3197 | MS.gene052889:intron | 50.0% |
ACATGACGCAGGATCTGCAG+CGG | + | 11075:2383-2402 | MS.gene052889:CDS | 55.0% | |
ACTCAACAAACGTTCGGGCC+TGG | - | 11075:3163-3182 | MS.gene052889:intergenic | 55.0% | |
GTGCAGCTGCAGTCTGTGAT+AGG | + | 11075:1390-1409 | MS.gene052889:CDS | 55.0% | |
TAGTTACCGCCCTTTGGTCC+AGG | + | 11075:3142-3161 | MS.gene052889:intron | 55.0% | |
TGCCTTATGAGTCGGCCCTA+AGG | + | 11075:2706-2725 | MS.gene052889:intron | 55.0% | |
! | TTGTGACTTGGGGATGAGGG+TGG | + | 11075:3182-3201 | MS.gene052889:intron | 55.0% |
AACGTTCGGGCCTGGACCAA+AGG | - | 11075:3155-3174 | MS.gene052889:intergenic | 60.0% | |
ACGTTCGGGCCTGGACCAAA+GGG | - | 11075:3154-3173 | MS.gene052889:intergenic | 60.0% | |
CATGACGCAGGATCTGCAGC+GGG | + | 11075:2384-2403 | MS.gene052889:CDS | 60.0% | |
TTCGGGCCTGGACCAAAGGG+CGG | - | 11075:3151-3170 | MS.gene052889:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
11075 | gene | 1142 | 3977 | 1142 | ID=MS.gene052889 |
11075 | mRNA | 1142 | 3977 | 1142 | ID=MS.gene052889.t1;Parent=MS.gene052889 |
11075 | exon | 1142 | 1197 | 1142 | ID=MS.gene052889.t1.exon1;Parent=MS.gene052889.t1 |
11075 | CDS | 1142 | 1197 | 1142 | ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1 |
11075 | exon | 1280 | 1510 | 1280 | ID=MS.gene052889.t1.exon2;Parent=MS.gene052889.t1 |
11075 | CDS | 1280 | 1510 | 1280 | ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1 |
11075 | exon | 2375 | 2663 | 2375 | ID=MS.gene052889.t1.exon3;Parent=MS.gene052889.t1 |
11075 | CDS | 2375 | 2663 | 2375 | ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1 |
11075 | exon | 3568 | 3764 | 3568 | ID=MS.gene052889.t1.exon4;Parent=MS.gene052889.t1 |
11075 | CDS | 3568 | 3764 | 3568 | ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1 |
11075 | exon | 3869 | 3977 | 3869 | ID=MS.gene052889.t1.exon5;Parent=MS.gene052889.t1 |
11075 | CDS | 3869 | 3977 | 3869 | ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1 |
Gene Sequence |
Protein sequence |