AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052889


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052889.t1 MTR_1g035690 98.299 294 5 0 1 294 293 586 0.0 610
MS.gene052889.t1 MTR_8g033290 75.170 294 72 1 1 293 315 608 4.01e-165 473
MS.gene052889.t1 MTR_3g073590 47.440 293 151 3 1 290 493 785 4.29e-87 276
MS.gene052889.t1 MTR_5g061340 46.758 293 153 3 1 290 666 958 5.91e-84 271
MS.gene052889.t1 MTR_5g018820 34.437 151 91 2 94 236 395 545 2.21e-19 88.6
MS.gene052889.t1 MTR_8g078760 34.706 170 99 4 104 264 408 574 3.74e-19 87.8
MS.gene052889.t1 MTR_5g012790 26.613 248 158 10 46 278 309 547 5.86e-17 81.3
MS.gene052889.t1 MTR_4g068920 31.818 154 97 3 94 239 405 558 6.02e-17 81.3
MS.gene052889.t1 MTR_8g078760 32.824 131 80 2 94 216 398 528 7.99e-13 68.9
MS.gene052889.t1 MTR_4g058015 26.768 198 122 6 94 277 461 649 2.94e-12 67.4
MS.gene052889.t1 MTR_3g101340 27.660 188 110 7 100 273 321 496 4.35e-12 66.6
MS.gene052889.t1 MTR_3g101340 27.660 188 110 7 100 273 347 522 4.50e-12 66.6
MS.gene052889.t1 MTR_8g079840 28.962 183 106 8 104 273 383 554 3.08e-11 64.3
MS.gene052889.t1 MTR_3g101340 26.531 196 110 7 100 273 346 529 4.64e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052889.t1 AT3G11920 63.051 295 107 2 1 293 320 614 1.56e-134 395
MS.gene052889.t1 AT4G08550 42.857 294 165 3 1 291 382 675 3.70e-75 243
MS.gene052889.t1 AT4G08550 42.917 240 135 2 54 291 382 621 2.46e-60 202
MS.gene052889.t1 AT1G16750 31.707 205 125 6 91 285 295 494 3.88e-21 93.6
MS.gene052889.t1 AT3G13000 30.085 236 130 7 74 291 303 521 1.54e-20 92.0
MS.gene052889.t1 AT3G13000 30.085 236 130 7 74 291 332 550 1.66e-20 91.7
MS.gene052889.t1 AT3G13000 30.085 236 130 7 74 291 332 550 1.66e-20 91.7
MS.gene052889.t1 AT5G66600 28.652 178 117 3 94 264 331 505 8.67e-19 86.7
MS.gene052889.t1 AT5G66600 28.652 178 117 3 94 264 365 539 9.10e-19 86.7
MS.gene052889.t1 AT5G66600 28.652 178 117 3 94 264 385 559 1.01e-18 86.7
MS.gene052889.t1 AT5G66600 28.652 178 117 3 94 264 385 559 1.01e-18 86.7
MS.gene052889.t1 AT5G66600 28.652 178 117 3 94 264 385 559 1.01e-18 86.7
MS.gene052889.t1 AT5G66600 28.652 178 117 3 94 264 385 559 1.01e-18 86.7
MS.gene052889.t1 AT5G66600 28.652 178 117 3 94 264 385 559 1.01e-18 86.7
MS.gene052889.t1 AT2G23700 32.778 180 106 5 95 264 479 653 1.11e-17 83.6
MS.gene052889.t1 AT5G42690 30.851 188 114 6 94 273 290 469 1.41e-16 80.1
MS.gene052889.t1 AT5G42690 30.851 188 114 6 94 273 265 444 1.52e-16 80.1
MS.gene052889.t1 AT5G42690 30.851 188 114 6 94 273 316 495 1.78e-16 79.7
MS.gene052889.t1 AT5G42690 30.851 188 114 6 94 273 317 496 1.80e-16 79.7
MS.gene052889.t1 AT5G42690 30.851 188 114 6 94 273 317 496 1.80e-16 79.7
MS.gene052889.t1 AT1G43020 29.775 178 115 2 84 254 202 376 3.49e-14 72.8
MS.gene052889.t1 AT5G47380 25.820 244 163 8 62 294 328 564 3.60e-14 73.2
MS.gene052889.t1 AT5G47380 25.820 244 163 8 62 294 328 564 3.80e-14 73.2
MS.gene052889.t1 AT5G47380 25.820 244 163 8 62 294 272 508 3.89e-14 72.8
MS.gene052889.t1 AT3G18900 30.625 160 99 4 94 244 228 384 9.59e-14 71.6
MS.gene052889.t1 AT3G18900 30.625 160 99 4 94 244 228 384 9.59e-14 71.6
MS.gene052889.t1 AT3G18900 30.625 160 99 4 94 244 304 460 1.14e-13 71.6
MS.gene052889.t1 AT3G18900 30.625 160 99 4 94 244 309 465 1.25e-13 71.2
MS.gene052889.t1 AT4G37080 30.508 177 111 6 104 273 383 554 3.97e-13 70.1
MS.gene052889.t1 AT4G37080 30.508 177 111 6 104 273 396 567 4.32e-13 69.7
MS.gene052889.t1 AT4G37080 30.508 177 111 6 104 273 396 567 4.32e-13 69.7
MS.gene052889.t1 AT5G60720 30.303 198 109 7 100 277 460 648 1.17e-12 68.6
MS.gene052889.t1 AT1G16750 46.154 78 37 2 91 165 295 370 1.92e-12 67.4
MS.gene052889.t1 AT1G76620 28.571 182 114 6 94 264 293 469 2.14e-12 67.8
MS.gene052889.t1 AT5G66600 31.538 130 82 2 94 216 385 514 2.22e-12 67.4
MS.gene052889.t1 AT5G66600 31.538 130 82 2 94 216 385 514 2.22e-12 67.4
MS.gene052889.t1 AT5G66600 31.538 130 82 2 94 216 385 514 2.22e-12 67.4
MS.gene052889.t1 AT5G66600 31.538 130 82 2 94 216 385 514 2.22e-12 67.4

Find 0 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATTTTTAAAAAGTAAAA+GGG - 11075:2778-2797 MS.gene052889:intergenic 10.0%
!!! TTACATTTTTAAAAAGTAAA+AGG - 11075:2779-2798 MS.gene052889:intergenic 10.0%
!! ATATAATGAAAAAACATGTT+TGG + 11075:2913-2932 MS.gene052889:intron 15.0%
!! CTATTACTTAAAAAACATAT+TGG - 11075:1235-1254 MS.gene052889:intergenic 15.0%
!! TAGTAATTTATATTATTTGC+AGG + 11075:3847-3866 MS.gene052889:intron 15.0%
!!! AACACTAGTTTAATTTTATT+TGG - 11075:3086-3105 MS.gene052889:intergenic 15.0%
!!! AATGTAATAATTTTTTTCCT+TGG + 11075:2792-2811 MS.gene052889:intron 15.0%
!!! ATTTTCTTTAAAAAGAATAG+AGG - 11075:2161-2180 MS.gene052889:intergenic 15.0%
!!! TGTGTTTCAATATTAAATTT+TGG + 11075:2673-2692 MS.gene052889:intron 15.0%
!! AAAAAATATAAGTTGCAAAC+TGG - 11075:2040-2059 MS.gene052889:intergenic 20.0%
!! AAAATGGATAATGAATTACT+TGG + 11075:3905-3924 MS.gene052889:CDS 20.0%
!! ATGAATATACGAAAAACAAA+AGG - 11075:3391-3410 MS.gene052889:intergenic 20.0%
!! ATTATATAATACATGTCGAA+AGG - 11075:2247-2266 MS.gene052889:intergenic 20.0%
!! TAACTAAAATTCTAGATTCT+AGG - 11075:2822-2841 MS.gene052889:intergenic 20.0%
!! TACAAGAAGAAAATTAATCA+AGG - 11075:1259-1278 MS.gene052889:intergenic 20.0%
!! TGAATATACGAAAAACAAAA+GGG - 11075:3390-3409 MS.gene052889:intergenic 20.0%
!! TTATATAATACATGTCGAAA+GGG - 11075:2246-2265 MS.gene052889:intergenic 20.0%
!!! TGATTAATTTTCTTCTTGTA+GGG + 11075:1259-1278 MS.gene052889:intron 20.0%
!!! TTGAAACATTTTGAGATAAA+CGG - 11075:1335-1354 MS.gene052889:intergenic 20.0%
!!! TTGATTAATTTTCTTCTTGT+AGG + 11075:1258-1277 MS.gene052889:intron 20.0%
!!! TTTTTTGGTAATCAAGTTAT+TGG - 11075:3015-3034 MS.gene052889:intergenic 20.0%
! AAATAGTTATCGCACTTTAT+GGG - 11075:3472-3491 MS.gene052889:intergenic 25.0%
! AATCTTTCTCAAAATCCTTA+GGG - 11075:2724-2743 MS.gene052889:intergenic 25.0%
! AATGAAAAAACATGTTTGGA+AGG + 11075:2917-2936 MS.gene052889:intron 25.0%
! ATGAAAAAACATGTTTGGAA+GGG + 11075:2918-2937 MS.gene052889:intron 25.0%
! ATGAAAGAAATGTGGTAAAA+TGG + 11075:3889-3908 MS.gene052889:CDS 25.0%
! CAAGTTAGAACTAACATATA+AGG - 11075:1712-1731 MS.gene052889:intergenic 25.0%
! CTTAATTACCACTTCAAAAT+TGG - 11075:3754-3773 MS.gene052889:intergenic 25.0%
! GGTCAATTATAGTAATTCAA+GGG - 11075:3065-3084 MS.gene052889:intergenic 25.0%
! GTAAATCTTATTGTCTATCA+CGG + 11075:1519-1538 MS.gene052889:intron 25.0%
! GTATATTCATTCTATTGAAC+CGG + 11075:3401-3420 MS.gene052889:intron 25.0%
! TAACTTGATTACCAAAAAAC+AGG + 11075:3016-3035 MS.gene052889:intron 25.0%
! TAATTGCATGAAGCTAAATT+TGG - 11075:1933-1952 MS.gene052889:intergenic 25.0%
! TCTCAAAATGTTTCAATTTC+CGG + 11075:1339-1358 MS.gene052889:CDS 25.0%
! TGGTCAATTATAGTAATTCA+AGG - 11075:3066-3085 MS.gene052889:intergenic 25.0%
!! ACATTCTGCTATTGATAATA+TGG + 11075:3503-3522 MS.gene052889:intron 25.0%
!! ATTTCATTCAAGTTTAGCTT+AGG - 11075:2291-2310 MS.gene052889:intergenic 25.0%
!! GTGAGTCAACTAAAATTTTA+GGG - 11075:3043-3062 MS.gene052889:intergenic 25.0%
!!! AAAGTGATTTTTCAAAATGC+AGG + 11075:2353-2372 MS.gene052889:intron 25.0%
!!! ATTTTGTTACTTCTGATATG+AGG + 11075:2315-2334 MS.gene052889:intron 25.0%
!!! GTAATAATTTTTTTCCTTGG+TGG + 11075:2795-2814 MS.gene052889:intron 25.0%
!!! TTTTGGAAATGAAAGAAATG+TGG + 11075:3881-3900 MS.gene052889:CDS 25.0%
AAAGAAATGCAGAGAATAAC+AGG + 11075:1782-1801 MS.gene052889:intron 30.0%
AAATCTCAGACCTTACTTAA+GGG - 11075:2886-2905 MS.gene052889:intergenic 30.0%
AAGAAAATACCTGAATTTGC+CGG + 11075:2173-2192 MS.gene052889:intron 30.0%
AATGTGGATGAATGAAATGA+AGG + 11075:1663-1682 MS.gene052889:intron 30.0%
AGGTTTCAAAAGTAGGTTAT+AGG - 11075:2222-2241 MS.gene052889:intergenic 30.0%
ATGAATCCTTTGATTCACTT+TGG + 11075:3583-3602 MS.gene052889:CDS 30.0%
ATGTGGATGAATGAAATGAA+GGG + 11075:1664-1683 MS.gene052889:intron 30.0%
ATTCACTTTGGACTTTGTAA+TGG + 11075:3595-3614 MS.gene052889:CDS 30.0%
CAATCTTTCTCAAAATCCTT+AGG - 11075:2725-2744 MS.gene052889:intergenic 30.0%
CTCAAAATGTTTCAATTTCC+GGG + 11075:1340-1359 MS.gene052889:CDS 30.0%
GAAATAGTTATCGCACTTTA+TGG - 11075:3473-3492 MS.gene052889:intergenic 30.0%
TCAAAATGTTTCAATTTCCG+GGG + 11075:1341-1360 MS.gene052889:CDS 30.0%
TCAACTCACAGAAAATTTGA+AGG - 11075:3112-3131 MS.gene052889:intergenic 30.0%
TCAGCAAAAGTGAAGAATTT+AGG + 11075:1486-1505 MS.gene052889:CDS 30.0%
TCTGATTTCCAGTATTTGAT+TGG + 11075:2532-2551 MS.gene052889:CDS 30.0%
TGAAAAAACATGTTTGGAAG+GGG + 11075:2919-2938 MS.gene052889:intron 30.0%
TTCAAGGGAATGTTATAATC+TGG + 11075:3232-3251 MS.gene052889:intron 30.0%
TTTCATTCATCCACATTTCT+CGG - 11075:1660-1679 MS.gene052889:intergenic 30.0%
! AACATATTGGTAGCTTTCTT+TGG - 11075:1222-1241 MS.gene052889:intergenic 30.0%
! GGTGAGTCAACTAAAATTTT+AGG - 11075:3044-3063 MS.gene052889:intergenic 30.0%
! TTATTTTCTTACCCGAAAAC+AGG - 11075:1190-1209 MS.gene052889:intergenic 30.0%
! TTTTCTTCTTGTAGGGAAAA+TGG + 11075:1266-1285 MS.gene052889:intron 30.0%
!! AAATTCTTCACTTTTGCTGA+TGG - 11075:1486-1505 MS.gene052889:intergenic 30.0%
!! GTGAAAAAAACCTCACTTTT+GGG - 11075:3633-3652 MS.gene052889:intergenic 30.0%
!! TTTTAGTTACCAACGTTACA+TGG + 11075:2833-2852 MS.gene052889:intron 30.0%
!!! AATTTTAGGGTCCTGTTTTT+TGG - 11075:3030-3049 MS.gene052889:intergenic 30.0%
AAAGGGAAATACACGATGTT+TGG - 11075:3373-3392 MS.gene052889:intergenic 35.0%
AAAGGGAAGGTTTCAAAAGT+AGG - 11075:2229-2248 MS.gene052889:intergenic 35.0%
AAGAACCTTATTGCTGATAC+CGG - 11075:2195-2214 MS.gene052889:intergenic 35.0%
AGATAAACGGTTCATGTTCA+AGG - 11075:1322-1341 MS.gene052889:intergenic 35.0%
AGGGAATGTTATAATCTGGA+CGG + 11075:3236-3255 MS.gene052889:intron 35.0%
AGTGAAGAATTTAGGAGGTA+TGG + 11075:1494-1513 MS.gene052889:intron 35.0%
ATAAGAGTAGGATGTCAAGA+AGG + 11075:2487-2506 MS.gene052889:CDS 35.0%
ATAATACATGTCGAAAGGGA+AGG - 11075:2242-2261 MS.gene052889:intergenic 35.0%
ATCCATGCTATGATAAGAGT+AGG + 11075:2475-2494 MS.gene052889:CDS 35.0%
ATCCTACTCTTATCATAGCA+TGG - 11075:2480-2499 MS.gene052889:intergenic 35.0%
CAAAATTGGAGTGAGATGAA+GGG - 11075:3740-3759 MS.gene052889:intergenic 35.0%
CAAACTACCTATATGAGCTA+TGG - 11075:1846-1865 MS.gene052889:intergenic 35.0%
CAAAGTCCAAAGTGAATCAA+AGG - 11075:3592-3611 MS.gene052889:intergenic 35.0%
CAAATACTGGAAATCAGAGA+AGG - 11075:2530-2549 MS.gene052889:intergenic 35.0%
CAAATCTCAGACCTTACTTA+AGG - 11075:2887-2906 MS.gene052889:intergenic 35.0%
CGTGTAGTGAAAACTAAGAT+TGG - 11075:2086-2105 MS.gene052889:intergenic 35.0%
CTAATCTCTGTCAGAAAACA+TGG - 11075:2967-2986 MS.gene052889:intergenic 35.0%
CTTAAACTTGTACAATGCCA+TGG + 11075:2450-2469 MS.gene052889:CDS 35.0%
GAGGATACCATTTGTAATAG+TGG - 11075:2578-2597 MS.gene052889:intergenic 35.0%
GATTTCCAGTATTTGATTGG+AGG + 11075:2535-2554 MS.gene052889:CDS 35.0%
GCAAAAGTGAAGAATTTAGG+AGG + 11075:1489-1508 MS.gene052889:CDS 35.0%
GCTATGTATAGAACATGTCA+AGG + 11075:1744-1763 MS.gene052889:intron 35.0%
GGACTTAAATCCCTTAAGTA+AGG + 11075:2873-2892 MS.gene052889:intron 35.0%
GTAATAGTGGCAAGAGAATA+AGG - 11075:2565-2584 MS.gene052889:intergenic 35.0%
TACTTGGATGCAAATAAAGC+TGG + 11075:3921-3940 MS.gene052889:CDS 35.0%
TATGGACATTGAATACGAGA+CGG - 11075:1615-1634 MS.gene052889:intergenic 35.0%
TCAAAATTGGAGTGAGATGA+AGG - 11075:3741-3760 MS.gene052889:intergenic 35.0%
TCTCTTGCCACTATTACAAA+TGG + 11075:2568-2587 MS.gene052889:CDS 35.0%
TTACACGTTAGTGTCACATA+CGG + 11075:1981-2000 MS.gene052889:intron 35.0%
! ACATTTGTTGCCTTATGAGT+CGG + 11075:2698-2717 MS.gene052889:intron 35.0%
! AGAAGCATAAGACTCAAGTA+TGG - 11075:1435-1454 MS.gene052889:intergenic 35.0%
! AGATAGTGACTTGTGTTTCA+AGG - 11075:1892-1911 MS.gene052889:intergenic 35.0%
! AGTCTTATGCTTCTGAAGAT+AGG + 11075:1441-1460 MS.gene052889:CDS 35.0%
! CGATGTTTGGTAACAAAGTT+TGG - 11075:3360-3379 MS.gene052889:intergenic 35.0%
! GGTGAAAAAAACCTCACTTT+TGG - 11075:3634-3653 MS.gene052889:intergenic 35.0%
! GTCAAGAAGGTGTAATCAAT+AGG + 11075:2500-2519 MS.gene052889:CDS 35.0%
! TAGGAGACATGTTGATTATG+TGG + 11075:1460-1479 MS.gene052889:CDS 35.0%
!! ATCTCACTCCAATTTTGAAG+TGG + 11075:3743-3762 MS.gene052889:CDS 35.0%
!! GGGGAATGAATGTTTGATTT+TGG + 11075:2109-2128 MS.gene052889:intron 35.0%
!! TTAGTTTTCACTACACGACT+GGG + 11075:2089-2108 MS.gene052889:intron 35.0%
!! TTGTAGGGAAAATGGTTTTG+AGG + 11075:1274-1293 MS.gene052889:intron 35.0%
AACTCTTCAGCAACTCTACA+AGG - 11075:3655-3674 MS.gene052889:intergenic 40.0%
AAGGGCTTGACTAAGGAATA+AGG - 11075:2619-2638 MS.gene052889:intergenic 40.0%
ACTGTCATAACTGCTAGTGA+TGG + 11075:1812-1831 MS.gene052889:intron 40.0%
AGAGAGTTCTTAGAGGATGA+TGG + 11075:3688-3707 MS.gene052889:CDS 40.0%
AGTTACCAACGTTACATGGT+CGG + 11075:2837-2856 MS.gene052889:intron 40.0%
ATTTGCCGGTATCAGCAATA+AGG + 11075:2187-2206 MS.gene052889:intron 40.0%
CACTAGCAGTTATGACAGTT+AGG - 11075:1811-1830 MS.gene052889:intergenic 40.0%
CTAAATCAAGCCCAAAAGTG+AGG + 11075:3620-3639 MS.gene052889:CDS 40.0%
GATGTCCTCCAATCAAATAC+TGG - 11075:2543-2562 MS.gene052889:intergenic 40.0%
GCATGAAGCTAAATTTGGCA+TGG - 11075:1928-1947 MS.gene052889:intergenic 40.0%
GGTATCAGCAATAAGGTTCT+TGG + 11075:2194-2213 MS.gene052889:intron 40.0%
GTCACAACTCAACAAACGTT+CGG - 11075:3169-3188 MS.gene052889:intergenic 40.0%
TATCATAGCATGGATGACCA+TGG - 11075:2470-2489 MS.gene052889:intergenic 40.0%
TATTCCTTAGTCAAGCCCTT+TGG + 11075:2619-2638 MS.gene052889:CDS 40.0%
TCACAACTCAACAAACGTTC+GGG - 11075:3168-3187 MS.gene052889:intergenic 40.0%
TGCAACTAGAGAGTTCTTAG+AGG + 11075:3681-3700 MS.gene052889:CDS 40.0%
TTCAATGTCCATATCTGTGC+TGG + 11075:1622-1641 MS.gene052889:intron 40.0%
TTGAAGTTGACCTAGAGAAG+AGG + 11075:3713-3732 MS.gene052889:CDS 40.0%
TTGACACATCTCTTAGCTGA+TGG + 11075:3948-3967 MS.gene052889:CDS 40.0%
TTTCTTACCCGAAAACAGGA+TGG - 11075:1186-1205 MS.gene052889:intergenic 40.0%
! AACCGGAGTTGTTGTTCTAA+CGG + 11075:3418-3437 MS.gene052889:intron 40.0%
! ACGTTTGTTGAGTTGTGACT+TGG + 11075:3170-3189 MS.gene052889:intron 40.0%
! ACTTCATCCATCCTGTTTTC+GGG + 11075:1176-1195 MS.gene052889:CDS 40.0%
! CACTTCATCCATCCTGTTTT+CGG + 11075:1175-1194 MS.gene052889:CDS 40.0%
! CGTTTGTTGAGTTGTGACTT+GGG + 11075:3171-3190 MS.gene052889:intron 40.0%
! CTTCTGTCATTTGTGCCAAA+GGG - 11075:2637-2656 MS.gene052889:intergenic 40.0%
! GTTTGTTGAGTTGTGACTTG+GGG + 11075:3172-3191 MS.gene052889:intron 40.0%
! TAGTTTTCACTACACGACTG+GGG + 11075:2090-2109 MS.gene052889:intron 40.0%
!! CTTAGTTTTCACTACACGAC+TGG + 11075:2088-2107 MS.gene052889:intron 40.0%
!!! AGGGAAAATGGTTTTGAGGA+GGG + 11075:1278-1297 MS.gene052889:intron 40.0%
!!! TAGGGAAAATGGTTTTGAGG+AGG + 11075:1277-1296 MS.gene052889:intron 40.0%
!!! TGCAGGTACAGTGTTGATTT+TGG + 11075:3864-3883 MS.gene052889:intron 40.0%
AACCCAGATGAACGGTTCAA+GGG + 11075:3217-3236 MS.gene052889:intron 45.0%
ACACATCTCTTAGCTGATGG+TGG + 11075:3951-3970 MS.gene052889:CDS 45.0%
AGGGGAAATTCCACAATAGG+TGG + 11075:2937-2956 MS.gene052889:intron 45.0%
AGTAAAAGGGTCATGCATGC+AGG - 11075:2765-2784 MS.gene052889:intergenic 45.0%
ATGGTCGGTCTTACTAGAAC+TGG + 11075:2852-2871 MS.gene052889:intron 45.0%
ATGTCAAGGTGCACGATACA+AGG + 11075:1758-1777 MS.gene052889:intron 45.0%
ATTCCCTTGAACCGTTCATC+TGG - 11075:3223-3242 MS.gene052889:intergenic 45.0%
CACAAATGACAGAAGGCTAG+AGG + 11075:2642-2661 MS.gene052889:CDS 45.0%
CACTATCATTTGTAGCACCC+CGG - 11075:1361-1380 MS.gene052889:intergenic 45.0%
CAGGTATGTAAACATGACGC+AGG + 11075:2372-2391 MS.gene052889:intron 45.0%
CCTTTGGCACAAATGACAGA+AGG + 11075:2635-2654 MS.gene052889:CDS 45.0%
GGAAGGGGAAATTCCACAAT+AGG + 11075:2934-2953 MS.gene052889:intron 45.0%
GTGATCTTCGATTGCTTCTG+AGG - 11075:2597-2616 MS.gene052889:intergenic 45.0%
TAAGACCGACCATGTAACGT+TGG - 11075:2845-2864 MS.gene052889:intergenic 45.0%
TCTAGATTCTAGGTCCACCA+AGG - 11075:2812-2831 MS.gene052889:intergenic 45.0%
TTCCCTTGAACCGTTCATCT+GGG - 11075:3222-3241 MS.gene052889:intergenic 45.0%
TTGAACCGTTCATCTGGGTT+GGG - 11075:3217-3236 MS.gene052889:intergenic 45.0%
TTGCTGATACCGGCAAATTC+AGG - 11075:2185-2204 MS.gene052889:intergenic 45.0%
! CATAACTGCTAGTGATGGTG+TGG + 11075:1817-1836 MS.gene052889:intron 45.0%
! CCTTCTGTCATTTGTGCCAA+AGG - 11075:2638-2657 MS.gene052889:intergenic 45.0%
! TGTTTTCCAACCTCAACAGC+AGG - 11075:1142-1161 MS.gene052889:intergenic 45.0%
!! CTTGGTTCTACCGAGAAATG+TGG + 11075:1647-1666 MS.gene052889:intron 45.0%
ACAAGCCCAACCCAGATGAA+CGG + 11075:3209-3228 MS.gene052889:intron 50.0%
ACATGGCTGACCACCTATTG+TGG - 11075:2950-2969 MS.gene052889:intergenic 50.0%
ACCAAGCACCAGCACAGATA+TGG - 11075:1633-1652 MS.gene052889:intergenic 50.0%
CAACCCAGATGAACGGTTCA+AGG + 11075:3216-3235 MS.gene052889:intron 50.0%
CGCCGTTAGAACAACAACTC+CGG - 11075:3423-3442 MS.gene052889:intergenic 50.0%
CTTGAACCGTTCATCTGGGT+TGG - 11075:3218-3237 MS.gene052889:intergenic 50.0%
GAGTCATAGTTACCGCCCTT+TGG + 11075:3136-3155 MS.gene052889:intron 50.0%
GATGAAGGGTCCTCTTCTCT+AGG - 11075:3726-3745 MS.gene052889:intergenic 50.0%
GTGGCAGCCATAGCTCATAT+AGG + 11075:1836-1855 MS.gene052889:intron 50.0%
TGTGCCAAAGGGCTTGACTA+AGG - 11075:2626-2645 MS.gene052889:intergenic 50.0%
! ATCCTTAGGGCCGACTCATA+AGG - 11075:2711-2730 MS.gene052889:intergenic 50.0%
! CAGACTGCAGCTGCACTTTT+CGG - 11075:1386-1405 MS.gene052889:intergenic 50.0%
! GAGTTGTGACTTGGGGATGA+GGG + 11075:3179-3198 MS.gene052889:intron 50.0%
! TCCATATCTGTGCTGGTGCT+TGG + 11075:1629-1648 MS.gene052889:intron 50.0%
! TGAGTTGTGACTTGGGGATG+AGG + 11075:3178-3197 MS.gene052889:intron 50.0%
ACATGACGCAGGATCTGCAG+CGG + 11075:2383-2402 MS.gene052889:CDS 55.0%
ACTCAACAAACGTTCGGGCC+TGG - 11075:3163-3182 MS.gene052889:intergenic 55.0%
GTGCAGCTGCAGTCTGTGAT+AGG + 11075:1390-1409 MS.gene052889:CDS 55.0%
TAGTTACCGCCCTTTGGTCC+AGG + 11075:3142-3161 MS.gene052889:intron 55.0%
TGCCTTATGAGTCGGCCCTA+AGG + 11075:2706-2725 MS.gene052889:intron 55.0%
! TTGTGACTTGGGGATGAGGG+TGG + 11075:3182-3201 MS.gene052889:intron 55.0%
AACGTTCGGGCCTGGACCAA+AGG - 11075:3155-3174 MS.gene052889:intergenic 60.0%
ACGTTCGGGCCTGGACCAAA+GGG - 11075:3154-3173 MS.gene052889:intergenic 60.0%
CATGACGCAGGATCTGCAGC+GGG + 11075:2384-2403 MS.gene052889:CDS 60.0%
TTCGGGCCTGGACCAAAGGG+CGG - 11075:3151-3170 MS.gene052889:intergenic 65.0%


Chromosome Type Strat End Strand Name
11075 gene 1142 3977 1142 ID=MS.gene052889
11075 mRNA 1142 3977 1142 ID=MS.gene052889.t1;Parent=MS.gene052889
11075 exon 1142 1197 1142 ID=MS.gene052889.t1.exon1;Parent=MS.gene052889.t1
11075 CDS 1142 1197 1142 ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1
11075 exon 1280 1510 1280 ID=MS.gene052889.t1.exon2;Parent=MS.gene052889.t1
11075 CDS 1280 1510 1280 ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1
11075 exon 2375 2663 2375 ID=MS.gene052889.t1.exon3;Parent=MS.gene052889.t1
11075 CDS 2375 2663 2375 ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1
11075 exon 3568 3764 3568 ID=MS.gene052889.t1.exon4;Parent=MS.gene052889.t1
11075 CDS 3568 3764 3568 ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1
11075 exon 3869 3977 3869 ID=MS.gene052889.t1.exon5;Parent=MS.gene052889.t1
11075 CDS 3869 3977 3869 ID=cds.MS.gene052889.t1;Parent=MS.gene052889.t1
Gene Sequence

>MS.gene052889

GCTGTTGAGGTTGGAAAACAGTTATGCAAGAAGCACTTCATCCATCCTGTTTTCGGGTAAGAAAATAACTTTTGAAACCAAAGAAAGCTACCAATATGTTTTTTAAGTAATAGTCCTTGATTAATTTTCTTCTTGTAGGGAAAATGGTTTTGAGGAGGGAAATCACTTCTATCGATTCCTTGAACATGAACCGTTTATCTCAAAATGTTTCAATTTCCGGGGTGCTACAAATGATAGTGAACCGAAAAGTGCAGCTGCAGTCTGTGATAGGCTTACAAAGATTATGTATGCCATACTTGAGTCTTATGCTTCTGAAGATAGGAGACATGTTGATTATGTGGCCATCAGCAAAAGTGAAGAATTTAGGAGGTATGGTAGTAAATCTTATTGTCTATCACGGCATCAACACAAATAGTTTCATTCAGTGATTTCATTTTCTTAAATTCTTAGCGATGTCTACTTGTTTGTGTCCGTCTCGTATTCAATGTCCATATCTGTGCTGGTGCTTGGTTCTACCGAGAAATGTGGATGAATGAAATGAAGGGAGAAAAATTAACAGAAGCACATCCTTATATGTTAGTTCTAACTTGAATATAGAGACTGCTATGTATAGAACATGTCAAGGTGCACGATACAAGGAAAAGAAATGCAGAGAATAACAGGATTCCTAACTGTCATAACTGCTAGTGATGGTGTGGCAGCCATAGCTCATATAGGTAGTTTGCAAAACAAGTAACTCGTTAAGAACCTTGAAACACAAGTCACTATCTGACGCTGACACGACCATGCCAAATTTAGCTTCATGCAATTACTTCTATTTCTTAAATTATTGCATGTGCTTACACGTTAGTGTCACATACGGTGTCTGTGTTCGTTCTCGATAGATTAATTATCTCCAGTTTGCAACTTATATTTTTTAAAAACAAATGTAGTTACATTGTCCAATCTTAGTTTTCACTACACGACTGGGGAATGAATGTTTGATTTTGGTGCAGTGTTGTGTACGTCTAGTAAAACCTCTATTCTTTTTAAAGAAAATACCTGAATTTGCCGGTATCAGCAATAAGGTTCTTGGTGCCTATAACCTACTTTTGAAACCTTCCCTTTCGACATGTATTATATAATAGTACTTTTATTTCAACATTACCTAAGCTAAACTTGAATGAAATCTAGATTTTGTTACTTCTGATATGAGGAGCATTACTTTATCGAAAGTGATTTTTCAAAATGCAGGTATGTAAACATGACGCAGGATCTGCAGCGGGTCGATCTCTTAGAACTATCAGAAAACGAGAAGCTCGCATTCTTCTTAAACTTGTACAATGCCATGGTCATCCATGCTATGATAAGAGTAGGATGTCAAGAAGGTGTAATCAATAGGAAATCCTTCTCTGATTTCCAGTATTTGATTGGAGGACATCCTTATTCTCTTGCCACTATTACAAATGGTATCCTCAGAAGCAATCGAAGATCACCTTATTCCTTAGTCAAGCCCTTTGGCACAAATGACAGAAGGCTAGAGGTTAGTTTTTGTGTTTCAATATTAAATTTTGGAGACATTTGTTGCCTTATGAGTCGGCCCTAAGGATTTTGAGAAAGATTGTTGCTTGATTCTTTATGCCTGCATGCATGACCCTTTTACTTTTTAAAAATGTAATAATTTTTTTCCTTGGTGGACCTAGAATCTAGAATTTTAGTTACCAACGTTACATGGTCGGTCTTACTAGAACTGGACTTAAATCCCTTAAGTAAGGTCTGAGATTTGAGTCTTATATAATGAAAAAACATGTTTGGAAGGGGAAATTCCACAATAGGTGGTCAGCCATGTTTTCTGACAGAGATTAGTTATCAGCAAAGTCGATATTTTGCACCAATAACTTGATTACCAAAAAACAGGACCCTAAAATTTTAGTTGACTCACCCTTGAATTACTATAATTGACCAAATAAAATTAAACTAGTGTTGCACCTTCAAATTTTCTGTGAGTTGAGTATGAGTCATAGTTACCGCCCTTTGGTCCAGGCCCGAACGTTTGTTGAGTTGTGACTTGGGGATGAGGGTGGTGAAACAAGCCCAACCCAGATGAACGGTTCAAGGGAATGTTATAATCTGGACGGTAGTATTTAAATAGTTAGACATTGTAAATTCATAGCTTTTAACTGATAATAGAAAGAAACGTCAGTCACTCTGCATACAAAGACGTAAACAAAATTAGCCAAACTTTGTTACCAAACATCGTGTATTTCCCTTTTGTTTTTCGTATATTCATTCTATTGAACCGGAGTTGTTGTTCTAACGGCGTGTTTTCAATTTATTTTGTATTTACTCCCATAAAGTGCGATAACTATTTCAATAGAAATAACATTCTGCTATTGATAATATGGTTTCATATGAAGAAATACTGACTTGTTCTTACAAAACTTCAGCTTGCAGTTGTCAAAATGAATCCTTTGATTCACTTTGGACTTTGTAATGGCACTAAATCAAGCCCAAAAGTGAGGTTTTTTTCACCTTGTAGAGTTGCTGAAGAGTTGAGATGTGCAACTAGAGAGTTCTTAGAGGATGATGGAATTGAAGTTGACCTAGAGAAGAGGACCCTTCATCTCACTCCAATTTTGAAGTGGTAATTAAGCAGCTTATGCATTTCTATACTCTTGATTTTAACTTTCAATAATTTCTAGCAGTATGCTTATGAAATATTAATATAGTAATTTATATTATTTGCAGGTACAGTGTTGATTTTGGAAATGAAAGAAATGTGGTAAAATGGATAATGAATTACTTGGATGCAAATAAAGCTGGTCTTTTGACACATCTCTTAGCTGATGGTGGTCCT

Protein sequence

>MS.gene052889.t1

AVEVGKQLCKKHFIHPVFGENGFEEGNHFYRFLEHEPFISKCFNFRGATNDSEPKSAAAVCDRLTKIMYAILESYASEDRRHVDYVAISKSEEFRRYVNMTQDLQRVDLLELSENEKLAFFLNLYNAMVIHAMIRVGCQEGVINRKSFSDFQYLIGGHPYSLATITNGILRSNRRSPYSLVKPFGTNDRRLELAVVKMNPLIHFGLCNGTKSSPKVRFFSPCRVAEELRCATREFLEDDGIEVDLEKRTLHLTPILKWYSVDFGNERNVVKWIMNYLDANKAGLLTHLLADGGP