Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73678.t1 | XP_003630390.1 | 97 | 641 | 18 | 1 | 1 | 641 | 1 | 640 | 0.00E+00 | 1141.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73678.t1 | G7LFS2 | 97.0 | 641 | 18 | 1 | 1 | 641 | 1 | 640 | 0.0e+00 | 1141.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene73678 | 0.863234 | 2.88E-64 | -1.69E-46 |
| MS.gene04919 | MS.gene73678 | 0.85131 | 9.64E-61 | -1.69E-46 |
| MS.gene04920 | MS.gene73678 | 0.871041 | 9.24E-67 | -1.69E-46 |
| MS.gene049283 | MS.gene73678 | 0.882411 | 1.07E-70 | -1.69E-46 |
| MS.gene049368 | MS.gene73678 | 0.807698 | 4.45E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene73678 | 0.869064 | 4.09E-66 | -1.69E-46 |
| MS.gene049983 | MS.gene73678 | 0.870445 | 1.45E-66 | -1.69E-46 |
| MS.gene050414 | MS.gene73678 | 0.82956 | 4.81E-55 | -1.69E-46 |
| MS.gene050571 | MS.gene73678 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene050646 | MS.gene73678 | 0.817534 | 3.14E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene73678 | 0.862157 | 6.18E-64 | -1.69E-46 |
| MS.gene050941 | MS.gene73678 | 0.80394 | 2.74E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene73678 | 0.819069 | 1.41E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene73678 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene73678 | 0.806132 | 9.54E-50 | -1.69E-46 |
| MS.gene051154 | MS.gene73678 | 0.813596 | 2.36E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene73678 | 0.817108 | 3.91E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene73678 | 0.814087 | 1.84E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene73678 | 0.803762 | 2.99E-49 | -1.69E-46 |
| MS.gene051637 | MS.gene73678 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene73678 | 0.816621 | 5.03E-52 | -1.69E-46 |
| MS.gene051821 | MS.gene73678 | 0.816193 | 6.27E-52 | -1.69E-46 |
| MS.gene051823 | MS.gene73678 | 0.806836 | 6.78E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene73678 | 0.818372 | 2.03E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene73678 | 0.826499 | 2.62E-54 | -1.69E-46 |
| MS.gene052118 | MS.gene73678 | 0.85478 | 9.80E-62 | -1.69E-46 |
| MS.gene052307 | MS.gene73678 | 0.806041 | 9.97E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene73678 | 0.815985 | 6.98E-52 | -1.69E-46 |
| MS.gene052518 | MS.gene73678 | 0.803956 | 2.72E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene73678 | 0.817902 | 2.59E-52 | -1.69E-46 |
| MS.gene052685 | MS.gene73678 | 0.805068 | 1.60E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene73678 | 0.806382 | 8.45E-50 | -1.69E-46 |
| MS.gene052889 | MS.gene73678 | 0.808533 | 2.96E-50 | -1.69E-46 |
| MS.gene052890 | MS.gene73678 | 0.810857 | 9.36E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene73678 | 0.809746 | 1.62E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene73678 | 0.840635 | 7.72E-58 | -1.69E-46 |
| MS.gene053931 | MS.gene73678 | 0.814402 | 1.57E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene73678 | 0.829054 | 6.38E-55 | -1.69E-46 |
| MS.gene054222 | MS.gene73678 | 0.803951 | 2.73E-49 | -1.69E-46 |
| MS.gene05439 | MS.gene73678 | 0.811506 | 6.77E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene73678 | 0.816225 | 6.17E-52 | -1.69E-46 |
| MS.gene054641 | MS.gene73678 | 0.823504 | 1.34E-53 | -1.69E-46 |
| MS.gene054684 | MS.gene73678 | 0.814125 | 1.81E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene73678 | 0.881194 | 2.94E-70 | -1.69E-46 |
| MS.gene054893 | MS.gene73678 | 0.88999 | 1.48E-73 | -1.69E-46 |
| MS.gene054957 | MS.gene73678 | 0.85236 | 4.86E-61 | -1.69E-46 |
| MS.gene055150 | MS.gene73678 | 0.816893 | 4.37E-52 | -1.69E-46 |
| MS.gene055222 | MS.gene73678 | 0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene05539 | MS.gene73678 | 0.802252 | 6.13E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene73678 | 0.828689 | 7.82E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene73678 | 0.808372 | 3.20E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene73678 | 0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene73678 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene05624 | MS.gene73678 | 0.818275 | 2.13E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene73678 | 0.818867 | 1.57E-52 | -1.69E-46 |
| MS.gene056776 | MS.gene73678 | 0.807857 | 4.12E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene73678 | 0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene73678 | 0.827688 | 1.36E-54 | -1.69E-46 |
| MS.gene05689 | MS.gene73678 | 0.816216 | 6.20E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene73678 | 0.835386 | 1.73E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene73678 | 0.808899 | 2.47E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene73678 | 0.838638 | 2.55E-57 | -1.69E-46 |
| MS.gene057155 | MS.gene73678 | 0.822855 | 1.89E-53 | -1.69E-46 |
| MS.gene057174 | MS.gene73678 | 0.812436 | 4.24E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene73678 | 0.832096 | 1.15E-55 | -1.69E-46 |
| MS.gene057622 | MS.gene73678 | 0.854094 | 1.55E-61 | -1.69E-46 |
| MS.gene057890 | MS.gene73678 | -0.802657 | 5.06E-49 | -1.69E-46 |
| MS.gene057893 | MS.gene73678 | -0.818549 | 1.85E-52 | -1.69E-46 |
| MS.gene058095 | MS.gene73678 | 0.840363 | 9.09E-58 | -1.69E-46 |
| MS.gene058159 | MS.gene73678 | 0.846231 | 2.47E-59 | -1.69E-46 |
| MS.gene058292 | MS.gene73678 | 0.828076 | 1.10E-54 | -1.69E-46 |
| MS.gene058317 | MS.gene73678 | 0.804946 | 1.69E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene73678 | 0.831162 | 1.95E-55 | -1.69E-46 |
| MS.gene058592 | MS.gene73678 | 0.827424 | 1.58E-54 | -1.69E-46 |
| MS.gene058781 | MS.gene73678 | 0.847614 | 1.03E-59 | -1.69E-46 |
| MS.gene058783 | MS.gene73678 | 0.806295 | 8.82E-50 | -1.69E-46 |
| MS.gene05878 | MS.gene73678 | 0.846289 | 2.39E-59 | -1.69E-46 |
| MS.gene059144 | MS.gene73678 | 0.802002 | 6.90E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene73678 | 0.831207 | 1.90E-55 | -1.69E-46 |
| MS.gene059170 | MS.gene73678 | 0.833949 | 3.97E-56 | -1.69E-46 |
| MS.gene05952 | MS.gene73678 | 0.866284 | 3.19E-65 | -1.69E-46 |
| MS.gene05956 | MS.gene73678 | 0.831519 | 1.59E-55 | -1.69E-46 |
| MS.gene059686 | MS.gene73678 | 0.806576 | 7.69E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene73678 | -0.860686 | 1.74E-63 | -1.69E-46 |
| MS.gene059901 | MS.gene73678 | -0.843718 | 1.18E-58 | -1.69E-46 |
| MS.gene06023 | MS.gene73678 | 0.814843 | 1.25E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene73678 | 0.831967 | 1.24E-55 | -1.69E-46 |
| MS.gene060412 | MS.gene73678 | 0.807315 | 5.37E-50 | -1.69E-46 |
| MS.gene060413 | MS.gene73678 | 0.814296 | 1.66E-51 | -1.69E-46 |
| MS.gene060435 | MS.gene73678 | 0.850578 | 1.55E-60 | -1.69E-46 |
| MS.gene060522 | MS.gene73678 | 0.846557 | 2.02E-59 | -1.69E-46 |
| MS.gene060527 | MS.gene73678 | 0.813058 | 3.10E-51 | -1.69E-46 |
| MS.gene060785 | MS.gene73678 | 0.817579 | 3.06E-52 | -1.69E-46 |
| MS.gene060850 | MS.gene73678 | 0.800314 | 1.53E-48 | -1.69E-46 |
| MS.gene060851 | MS.gene73678 | 0.801039 | 1.09E-48 | -1.69E-46 |
| MS.gene060852 | MS.gene73678 | 0.800894 | 1.16E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene73678 | 0.824483 | 7.88E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene73678 | 0.866986 | 1.91E-65 | -1.69E-46 |
| MS.gene060935 | MS.gene73678 | 0.854262 | 1.38E-61 | -1.69E-46 |
| MS.gene060937 | MS.gene73678 | 0.874243 | 7.86E-68 | -1.69E-46 |
| MS.gene061100 | MS.gene73678 | 0.84416 | 8.98E-59 | -1.69E-46 |
| MS.gene061160 | MS.gene73678 | 0.811695 | 6.16E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene73678 | 0.806975 | 6.34E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73678.t1 | MTR_8g095080 | 97.192 | 641 | 17 | 1 | 1 | 641 | 1 | 640 | 0.0 | 1274 |
| MS.gene73678.t1 | MTR_8g095080 | 97.886 | 473 | 9 | 1 | 1 | 473 | 1 | 472 | 0.0 | 950 |
| MS.gene73678.t1 | MTR_3g097240 | 71.479 | 568 | 145 | 6 | 74 | 641 | 73 | 623 | 0.0 | 765 |
| MS.gene73678.t1 | MTR_1g096970 | 63.838 | 542 | 184 | 6 | 102 | 638 | 2 | 536 | 0.0 | 671 |
| MS.gene73678.t1 | MTR_3g097240 | 75.584 | 385 | 80 | 4 | 74 | 458 | 73 | 443 | 0.0 | 585 |
| MS.gene73678.t1 | MTR_3g097240 | 74.167 | 360 | 79 | 4 | 74 | 433 | 73 | 418 | 0.0 | 535 |
| MS.gene73678.t1 | MTR_3g114010 | 45.908 | 501 | 233 | 7 | 101 | 579 | 76 | 560 | 1.88e-143 | 430 |
| MS.gene73678.t1 | MTR_1g025340 | 49.268 | 410 | 200 | 3 | 106 | 513 | 86 | 489 | 6.45e-126 | 385 |
| MS.gene73678.t1 | MTR_0318s0020 | 25.551 | 454 | 257 | 12 | 151 | 532 | 128 | 572 | 6.25e-28 | 119 |
| MS.gene73678.t1 | MTR_1g044135 | 29.187 | 209 | 138 | 2 | 151 | 356 | 43 | 244 | 9.08e-17 | 84.3 |
| MS.gene73678.t1 | MTR_1g044135 | 28.966 | 145 | 90 | 3 | 374 | 514 | 440 | 575 | 2.54e-13 | 73.6 |
| MS.gene73678.t1 | MTR_1g073890 | 27.907 | 215 | 146 | 2 | 151 | 362 | 46 | 254 | 2.07e-16 | 83.2 |
| MS.gene73678.t1 | MTR_1g073890 | 30.137 | 146 | 87 | 3 | 374 | 514 | 410 | 545 | 1.09e-12 | 71.2 |
| MS.gene73678.t1 | MTR_6g461910 | 27.570 | 214 | 147 | 3 | 151 | 360 | 36 | 245 | 1.60e-13 | 73.9 |
| MS.gene73678.t1 | MTR_6g461910 | 33.333 | 141 | 83 | 3 | 374 | 511 | 356 | 488 | 3.97e-13 | 72.8 |
| MS.gene73678.t1 | MTR_1g092540 | 24.528 | 212 | 148 | 4 | 150 | 356 | 25 | 229 | 2.06e-13 | 73.9 |
| MS.gene73678.t1 | MTR_1g092540 | 31.250 | 144 | 86 | 3 | 372 | 511 | 433 | 567 | 2.94e-13 | 73.2 |
| MS.gene73678.t1 | MTR_1g061540 | 30.070 | 143 | 87 | 3 | 374 | 514 | 387 | 518 | 9.90e-13 | 71.2 |
| MS.gene73678.t1 | MTR_3g091180 | 28.477 | 151 | 90 | 3 | 372 | 514 | 424 | 564 | 2.18e-11 | 67.4 |
| MS.gene73678.t1 | MTR_7g103490 | 37.500 | 88 | 55 | 0 | 151 | 238 | 29 | 116 | 4.98e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73678.t1 | AT1G34320 | 56.297 | 659 | 266 | 10 | 1 | 641 | 1 | 655 | 0.0 | 699 |
| MS.gene73678.t1 | AT1G34320 | 56.297 | 659 | 266 | 10 | 1 | 641 | 1 | 655 | 0.0 | 699 |
| MS.gene73678.t1 | AT5G08660 | 52.672 | 655 | 277 | 8 | 1 | 641 | 1 | 636 | 0.0 | 612 |
| MS.gene73678.t1 | AT5G08660 | 52.672 | 655 | 277 | 8 | 1 | 641 | 1 | 636 | 0.0 | 612 |
| MS.gene73678.t1 | AT5G08660 | 52.672 | 655 | 277 | 8 | 1 | 641 | 1 | 636 | 0.0 | 612 |
| MS.gene73678.t1 | AT5G08660 | 57.025 | 484 | 184 | 4 | 1 | 473 | 1 | 471 | 6.69e-178 | 513 |
| MS.gene73678.t1 | AT1G30755 | 48.723 | 470 | 228 | 5 | 101 | 563 | 83 | 546 | 1.56e-142 | 428 |
| MS.gene73678.t1 | AT1G30755 | 48.723 | 470 | 228 | 5 | 101 | 563 | 83 | 546 | 1.56e-142 | 428 |
| MS.gene73678.t1 | AT1G30755 | 48.723 | 470 | 228 | 5 | 101 | 563 | 83 | 546 | 1.56e-142 | 428 |
| MS.gene73678.t1 | AT1G30755 | 52.279 | 373 | 175 | 2 | 101 | 472 | 83 | 453 | 8.92e-129 | 387 |
| MS.gene73678.t1 | AT1G30755 | 51.253 | 359 | 172 | 2 | 101 | 458 | 83 | 439 | 3.33e-117 | 357 |
| MS.gene73678.t1 | AT1G30755 | 51.253 | 359 | 172 | 2 | 101 | 458 | 83 | 439 | 3.33e-117 | 357 |
| MS.gene73678.t1 | AT5G51670 | 24.235 | 425 | 260 | 7 | 146 | 513 | 32 | 451 | 8.74e-23 | 102 |
| MS.gene73678.t1 | AT5G51670 | 24.235 | 425 | 260 | 7 | 146 | 513 | 32 | 451 | 8.74e-23 | 102 |
| MS.gene73678.t1 | AT3G23160 | 28.708 | 209 | 140 | 2 | 151 | 356 | 43 | 245 | 1.10e-16 | 84.0 |
| MS.gene73678.t1 | AT3G23160 | 31.724 | 145 | 87 | 3 | 374 | 514 | 361 | 497 | 1.77e-13 | 73.9 |
Find 112 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATAGTGTTCTTCCTTCT+TGG | 0.214550 | 4.3:+7721881 | None:intergenic |
| TTGCTGATGGTTCGAATAAA+TGG | 0.240623 | 4.3:+7716966 | None:intergenic |
| AGTGCTTAACCTGCTTCTTT+TGG | 0.267827 | 4.3:+7717654 | None:intergenic |
| AGAGCTGGCACTATTGGATT+TGG | 0.280737 | 4.3:-7720067 | MS.gene73678:CDS |
| TGCAGAGCGCATCACGGTTT+TGG | 0.282124 | 4.3:-7715665 | MS.gene73678:intron |
| GGACTTTGACAGTCTGAAAA+TGG | 0.283201 | 4.3:-7715187 | MS.gene73678:CDS |
| AGTAACAAAATTCCTGTTAG+AGG | 0.287347 | 4.3:-7715231 | MS.gene73678:CDS |
| AGATTTAGTATCAAAGGATA+TGG | 0.300423 | 4.3:-7719825 | MS.gene73678:CDS |
| GGGTGTGGATAGTAAGAAAA+AGG | 0.306250 | 4.3:-7721787 | MS.gene73678:CDS |
| GGCTACCTCCTCCAAACTTC+TGG | 0.310516 | 4.3:+7717610 | None:intergenic |
| TCTGATGAGGTGATTCGTTT+TGG | 0.312370 | 4.3:-7719647 | MS.gene73678:CDS |
| AACATGAAATGTAGGTAATT+TGG | 0.317265 | 4.3:+7716374 | None:intergenic |
| GTCGCTCTGGTCCAGAAGTT+TGG | 0.343089 | 4.3:-7717621 | MS.gene73678:CDS |
| AGTGTATCCCTTGTATTTGC+AGG | 0.358116 | 4.3:+7716438 | None:intergenic |
| AGCATGACAAATTTAAATTC+TGG | 0.359223 | 4.3:-7720010 | MS.gene73678:CDS |
| CTAGGCAGAGCTGGCACTAT+TGG | 0.364186 | 4.3:-7720073 | MS.gene73678:CDS |
| CAAGTCTACAAAAGGTAATA+AGG | 0.364781 | 4.3:-7721910 | MS.gene73678:CDS |
| AGGATATGGACGAACTTCTA+AGG | 0.365311 | 4.3:-7719811 | MS.gene73678:CDS |
| TCTGGCGGTGGCTTTGCATA+TGG | 0.369637 | 4.3:-7719992 | MS.gene73678:CDS |
| TCTCTTGTGGCTTCACCGCT+TGG | 0.373772 | 4.3:-7715406 | MS.gene73678:CDS |
| CACTATGGTAATCATAAATC+TGG | 0.382794 | 4.3:-7721867 | MS.gene73678:CDS |
| ATACCATGAGTTACATGCTT+TGG | 0.387151 | 4.3:-7718137 | MS.gene73678:CDS |
| AGAAGAGGTGCTTAAGTTAG+AGG | 0.388917 | 4.3:-7719855 | MS.gene73678:CDS |
| GCCCTGCAGGACCCAATCTT+TGG | 0.389603 | 4.3:+7716940 | None:intergenic |
| CATCAGCAATCGCCAAAGAT+TGG | 0.396750 | 4.3:-7716952 | MS.gene73678:CDS |
| GAGCTGGCACTATTGGATTT+GGG | 0.398846 | 4.3:-7720066 | MS.gene73678:CDS |
| CGCCAAAGATTGGGTCCTGC+AGG | 0.405769 | 4.3:-7716942 | MS.gene73678:CDS |
| TGGTTCGAATAAATGGTTTA+CGG | 0.411166 | 4.3:+7716973 | None:intergenic |
| TACTTACTAGAGTATCCATT+TGG | 0.418537 | 4.3:+7716889 | None:intergenic |
| TTGGAGATAAATAAAGCCTT+TGG | 0.420581 | 4.3:-7717336 | MS.gene73678:CDS |
| GTTGGAGAGTGGGCAAGCAC+TGG | 0.422682 | 4.3:-7715638 | MS.gene73678:CDS |
| TTGGCTGTGTTTGTAGCAAT+TGG | 0.429155 | 4.3:+7715810 | None:intergenic |
| TGTATTTGCAGGCATAGAAC+TGG | 0.429803 | 4.3:+7716449 | None:intergenic |
| AGGAATGGTGATTTCTATGA+TGG | 0.432711 | 4.3:-7721720 | MS.gene73678:CDS |
| CGATAGTCTGTCAATCTTGA+AGG | 0.439047 | 4.3:-7717690 | MS.gene73678:CDS |
| GAATAGTCCCATATATTATC+TGG | 0.443168 | 4.3:+7715005 | None:intergenic |
| CTTGTGGCTTCACCGCTTGG+CGG | 0.452374 | 4.3:-7715403 | MS.gene73678:CDS |
| CACTGTAGCAGATATTAAAC+AGG | 0.455035 | 4.3:-7715862 | MS.gene73678:CDS |
| CAATCTTTGGCGATTGCTGA+TGG | 0.459530 | 4.3:+7716953 | None:intergenic |
| TGCAAATATAGTGCTCCAAA+TGG | 0.466071 | 4.3:-7716904 | MS.gene73678:CDS |
| ATCAGCAATCGCCAAAGATT+GGG | 0.466852 | 4.3:-7716951 | MS.gene73678:CDS |
| CTTTGTTCCAAGTCTACAAA+AGG | 0.469105 | 4.3:-7721918 | MS.gene73678:CDS |
| TGCAGGCATAGAACTGGATC+TGG | 0.477034 | 4.3:+7716455 | None:intergenic |
| AATAAAGCCTTTGGCAGTGC+AGG | 0.481849 | 4.3:-7717327 | MS.gene73678:intron |
| GATCATTAAAAGTAAAAGCT+TGG | 0.481852 | 4.3:-7715208 | MS.gene73678:CDS |
| GACTTCTCCAACATCACCTC+CGG | 0.483849 | 4.3:+7715368 | None:intergenic |
| TACATTTCATGTTGCAGAAG+AGG | 0.484223 | 4.3:-7716364 | MS.gene73678:intron |
| GGATCCTCAGTGGCACAACT+TGG | 0.485426 | 4.3:-7719612 | MS.gene73678:CDS |
| GCATATGGAGCTGTAACAAA+GGG | 0.491949 | 4.3:-7719977 | MS.gene73678:CDS |
| AGTTCACGCCTAGGCAGAGC+TGG | 0.493448 | 4.3:-7720082 | MS.gene73678:CDS |
| GTTCTATGCCTGCAAATACA+AGG | 0.505891 | 4.3:-7716446 | MS.gene73678:CDS |
| TGTCAAGGGCTTTAGTCTCA+TGG | 0.508920 | 4.3:-7719912 | MS.gene73678:CDS |
| AAGACAAGCTGCTGTTGCTA+AGG | 0.512156 | 4.3:-7721646 | MS.gene73678:intron |
| ACTTAGAAGCCAAAAGAAGC+AGG | 0.515237 | 4.3:-7717663 | MS.gene73678:CDS |
| TCTTCTGCAACATGAAATGT+AGG | 0.515563 | 4.3:+7716366 | None:intergenic |
| TAATGCAAAGAGAGCCCTGC+AGG | 0.516772 | 4.3:+7716927 | None:intergenic |
| AGCAGATATTAAACAGGAGA+TGG | 0.519050 | 4.3:-7715856 | MS.gene73678:CDS |
| GATGAGTTTAGTTCAACATA+CGG | 0.524002 | 4.3:-7719397 | MS.gene73678:CDS |
| TTGGTGTTGCTGCAGAAACT+AGG | 0.524480 | 4.3:-7721740 | MS.gene73678:CDS |
| ACCAAGAAGGAAGAACACTA+TGG | 0.524865 | 4.3:-7721882 | MS.gene73678:CDS |
| AGTAAAGCCGGAGGTGATGT+TGG | 0.528304 | 4.3:-7715375 | MS.gene73678:CDS |
| TATTAAACATTTGAAAGAAG+AGG | 0.530195 | 4.3:-7719870 | MS.gene73678:CDS |
| TGTTCAAGATTTAGTATCAA+AGG | 0.536250 | 4.3:-7719831 | MS.gene73678:CDS |
| GTAACAAAGGGGAACGAAGT+TGG | 0.536469 | 4.3:-7719965 | MS.gene73678:CDS |
| GGTAATCATAAATCTGGTGT+TGG | 0.537321 | 4.3:-7721861 | MS.gene73678:CDS |
| TGCTCATCGGTTGTTAGCAA+TGG | 0.540892 | 4.3:+7715273 | None:intergenic |
| ACTTGAAGAAGAAGTCGCTC+TGG | 0.541370 | 4.3:-7717634 | MS.gene73678:CDS |
| CAATAGTGCCAGCTCTGCCT+AGG | 0.543379 | 4.3:+7720074 | None:intergenic |
| TTGGAGAGTGGGCAAGCACT+GGG | 0.543558 | 4.3:-7715637 | MS.gene73678:intron |
| TGCATATGGAGCTGTAACAA+AGG | 0.543642 | 4.3:-7719978 | MS.gene73678:CDS |
| TGTTTCAATCCGCATTACTT+CGG | 0.546642 | 4.3:+7715476 | None:intergenic |
| GACAAGTGCAAAGGAGGGTG+TGG | 0.549385 | 4.3:-7721802 | MS.gene73678:CDS |
| ACAAATTTAAATTCTGGCGG+TGG | 0.549754 | 4.3:-7720004 | MS.gene73678:CDS |
| TGATTTGACAAGTGCAAAGG+AGG | 0.552376 | 4.3:-7721808 | MS.gene73678:CDS |
| ATATTCTTGAACTTCTCTTG+TGG | 0.555712 | 4.3:-7715419 | MS.gene73678:CDS |
| CGTCAGCATGATCTGCTCAT+CGG | 0.559928 | 4.3:+7715260 | None:intergenic |
| TCAAAGACAAACAAAAGAAG+AGG | 0.561166 | 4.3:-7719442 | MS.gene73678:CDS |
| TATCCAAAGCATGTAACTCA+TGG | 0.568232 | 4.3:+7718134 | None:intergenic |
| GTAACAAAATTCCTGTTAGA+GGG | 0.569393 | 4.3:-7715230 | MS.gene73678:CDS |
| TAATAAGGCTTTAACCAAGA+AGG | 0.570936 | 4.3:-7721895 | MS.gene73678:CDS |
| GGTTGCAAACACTATTGTCA+AGG | 0.574498 | 4.3:-7719927 | MS.gene73678:CDS |
| GTTGACGTTCTAGACACACT+TGG | 0.587915 | 4.3:-7720037 | MS.gene73678:CDS |
| GCTCTGGTCCAGAAGTTTGG+AGG | 0.590660 | 4.3:-7717618 | MS.gene73678:CDS |
| GTATATACCTGCACTGCCAA+AGG | 0.592690 | 4.3:+7717320 | None:intergenic |
| GGAATGGTGATTTCTATGAT+GGG | 0.595454 | 4.3:-7721719 | MS.gene73678:CDS |
| TTGGCGGTCAAAAGTAAAGC+CGG | 0.602782 | 4.3:-7715387 | MS.gene73678:CDS |
| TAGTGATTTGACAAGTGCAA+AGG | 0.607913 | 4.3:-7721811 | MS.gene73678:CDS |
| GTTGCAAACACTATTGTCAA+GGG | 0.609003 | 4.3:-7719926 | MS.gene73678:CDS |
| CTGGTCCAGAAGTTTGGAGG+AGG | 0.609762 | 4.3:-7717615 | MS.gene73678:intron |
| GGATTGTTGCTGCAGACAAG+AGG | 0.610168 | 4.3:-7719790 | MS.gene73678:intron |
| CTCAACGACAAGTAGAAGCA+AGG | 0.611322 | 4.3:-7715124 | MS.gene73678:CDS |
| TTGACGTTCTAGACACACTT+GGG | 0.616300 | 4.3:-7720036 | MS.gene73678:CDS |
| GCCAAAGATTGGGTCCTGCA+GGG | 0.618606 | 4.3:-7716941 | MS.gene73678:CDS |
| ATGACAAATTTAAATTCTGG+CGG | 0.623658 | 4.3:-7720007 | MS.gene73678:CDS |
| GCCTAGGCGTGAACTCACCT+CGG | 0.624055 | 4.3:+7720090 | None:intergenic |
| TCAGCATAAGCGTGATGAGG+AGG | 0.627680 | 4.3:-7718095 | MS.gene73678:CDS |
| CGATGAGCAGATCATGCTGA+CGG | 0.632881 | 4.3:-7715259 | MS.gene73678:CDS |
| TCTGTCATAAAGTCTCATGT+TGG | 0.633215 | 4.3:-7715342 | MS.gene73678:CDS |
| GATTTGACAAGTGCAAAGGA+GGG | 0.634502 | 4.3:-7721807 | MS.gene73678:CDS |
| TTCTATGCCTGCAAATACAA+GGG | 0.637331 | 4.3:-7716445 | MS.gene73678:CDS |
| CTTTCTATTTCAGGTCTCCG+AGG | 0.639149 | 4.3:-7720107 | MS.gene73678:intron |
| TCCGAGGTGAGTTCACGCCT+AGG | 0.646167 | 4.3:-7720091 | MS.gene73678:CDS |
| CGATCCAAGTTGTGCCACTG+AGG | 0.655867 | 4.3:+7719608 | None:intergenic |
| CTATGAAGACCGAAGTAATG+CGG | 0.659298 | 4.3:-7715485 | MS.gene73678:CDS |
| TTATCAGCATAAGCGTGATG+AGG | 0.663554 | 4.3:-7718098 | MS.gene73678:CDS |
| AATTGATGCAGAGCGCATCA+CGG | 0.675237 | 4.3:-7715671 | MS.gene73678:intron |
| CATATGGAGCTGTAACAAAG+GGG | 0.707348 | 4.3:-7719976 | MS.gene73678:CDS |
| ATCGGTCAAAGGATCCTCAG+TGG | 0.720581 | 4.3:-7719622 | MS.gene73678:CDS |
| AATTCAAGTGCAGCTCAAAG+CGG | 0.724106 | 4.3:-7718070 | MS.gene73678:intron |
| GTTGCTGCAGAAACTAGGAA+TGG | 0.727394 | 4.3:-7721735 | MS.gene73678:CDS |
| GCGGTCAAAAGTAAAGCCGG+AGG | 0.733563 | 4.3:-7715384 | MS.gene73678:CDS |
| GAGTTTAGTTCAACATACGG+CGG | 0.743997 | 4.3:-7719394 | MS.gene73678:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 7715020 | 7721949 | 7715020 | ID=MS.gene73678 |
| chr4.3 | mRNA | 7715020 | 7721949 | 7715020 | ID=MS.gene73678.t1;Parent=MS.gene73678 |
| chr4.3 | exon | 7721647 | 7721949 | 7721647 | ID=MS.gene73678.t1.exon1;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7721647 | 7721949 | 7721647 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7719791 | 7720116 | 7719791 | ID=MS.gene73678.t1.exon2;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7719791 | 7720116 | 7719791 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7719596 | 7719688 | 7719596 | ID=MS.gene73678.t1.exon3;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7719596 | 7719688 | 7719596 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7719395 | 7719485 | 7719395 | ID=MS.gene73678.t1.exon4;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7719395 | 7719485 | 7719395 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7718071 | 7718164 | 7718071 | ID=MS.gene73678.t1.exon5;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7718071 | 7718164 | 7718071 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7717616 | 7717713 | 7717616 | ID=MS.gene73678.t1.exon6;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7717616 | 7717713 | 7717616 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7717328 | 7717397 | 7717328 | ID=MS.gene73678.t1.exon7;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7717328 | 7717397 | 7717328 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7716896 | 7716999 | 7716896 | ID=MS.gene73678.t1.exon8;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7716896 | 7716999 | 7716896 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7716365 | 7716481 | 7716365 | ID=MS.gene73678.t1.exon9;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7716365 | 7716481 | 7716365 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7715810 | 7715886 | 7715810 | ID=MS.gene73678.t1.exon10;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7715810 | 7715886 | 7715810 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7715638 | 7715682 | 7715638 | ID=MS.gene73678.t1.exon11;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7715638 | 7715682 | 7715638 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| chr4.3 | exon | 7715020 | 7715527 | 7715020 | ID=MS.gene73678.t1.exon12;Parent=MS.gene73678.t1 |
| chr4.3 | CDS | 7715020 | 7715527 | 7715020 | ID=cds.MS.gene73678.t1;Parent=MS.gene73678.t1 |
| Gene Sequence |
| Protein sequence |
