AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26532


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26532.t1 MTR_4g086600 98.789 413 5 0 1 413 42 454 0.0 852
MS.gene26532.t1 MTR_1g020080 55.637 408 147 6 1 407 36 410 3.18e-148 427
MS.gene26532.t1 MTR_3g101370 53.623 414 138 8 1 407 42 408 4.90e-144 416
MS.gene26532.t1 MTR_4g131970 52.105 380 122 7 36 403 57 388 1.10e-129 380
MS.gene26532.t1 MTR_2g022950 58.228 316 113 4 60 374 45 342 2.22e-126 371
MS.gene26532.t1 MTR_2g097960 53.295 349 142 6 64 398 6 347 1.83e-122 362
MS.gene26532.t1 MTR_1g020080 53.667 300 106 5 1 300 36 302 1.91e-99 299
MS.gene26532.t1 MTR_3g101370 50.667 300 96 7 1 295 42 294 2.46e-93 283
MS.gene26532.t1 MTR_2g022950 60.000 210 79 2 60 268 45 250 4.95e-85 261
MS.gene26532.t1 MTR_2g022950 63.590 195 66 2 60 253 45 235 2.37e-84 259
MS.gene26532.t1 MTR_3g109090 33.333 303 173 10 74 366 43 326 1.25e-37 141
MS.gene26532.t1 MTR_3g109090 33.333 303 173 10 74 366 59 342 1.54e-37 141
MS.gene26532.t1 MTR_4g124940 30.640 297 188 8 74 366 45 327 7.31e-36 136
MS.gene26532.t1 MTR_8g022050 29.851 335 199 11 37 366 41 344 2.53e-34 132
MS.gene26532.t1 MTR_7g102730 27.119 295 157 9 76 358 11 259 3.24e-26 111
MS.gene26532.t1 MTR_7g102730 28.920 287 165 10 74 350 97 354 2.14e-22 100
MS.gene26532.t1 MTR_4g085540 27.869 305 183 9 77 372 124 400 1.04e-25 110
MS.gene26532.t1 MTR_4g085540 27.465 284 160 10 76 353 35 278 3.89e-21 96.3
MS.gene26532.t1 MTR_4g085540 26.500 200 114 6 73 254 211 395 5.42e-13 71.2
MS.gene26532.t1 MTR_1g019150 25.962 312 181 9 77 372 122 399 1.13e-20 94.7
MS.gene26532.t1 MTR_1g019150 26.148 283 165 8 76 353 33 276 1.06e-19 91.7
MS.gene26532.t1 MTR_1g019150 29.703 202 128 6 62 254 198 394 7.80e-16 80.1
MS.gene26532.t1 MTR_1g097440 26.797 306 175 11 76 374 31 294 7.17e-20 92.4
MS.gene26532.t1 MTR_1g097440 25.952 289 182 10 77 358 120 383 3.51e-19 90.1
MS.gene26532.t1 MTR_1g097440 28.495 186 121 6 77 254 211 392 5.43e-13 71.2
MS.gene26532.t1 MTR_3g102040 27.083 288 164 9 70 350 17 265 1.03e-19 91.7
MS.gene26532.t1 MTR_3g102040 24.756 307 190 10 77 372 114 390 9.00e-17 82.8
MS.gene26532.t1 MTR_3g102040 27.861 201 136 5 60 254 188 385 1.73e-13 72.8
MS.gene26532.t1 MTR_3g065190 29.670 182 117 3 76 257 26 196 1.18e-19 90.5
MS.gene26532.t1 MTR_4g104470 32.275 189 119 4 71 256 118 300 2.96e-19 88.2
MS.gene26532.t1 MTR_3g075500 33.333 195 118 5 69 258 103 290 3.57e-19 87.4
MS.gene26532.t1 MTR_1g061870 23.711 291 178 7 76 361 16 267 5.03e-19 89.4
MS.gene26532.t1 MTR_1g061870 26.481 287 168 10 77 353 105 358 4.10e-17 83.6
MS.gene26532.t1 MTR_6g040190 24.832 298 175 7 73 365 23 276 5.92e-19 89.4
MS.gene26532.t1 MTR_6g040190 27.053 207 136 5 79 276 207 407 6.88e-11 64.7
MS.gene26532.t1 MTR_1g056520 28.962 183 124 3 75 254 108 287 8.52e-18 84.0
MS.gene26532.t1 MTR_3g075500 33.908 174 103 5 69 237 103 269 9.12e-17 80.1
MS.gene26532.t1 MTR_7g106440 26.442 208 137 4 62 259 96 297 3.61e-16 79.3
MS.gene26532.t1 MTR_1g045510 29.474 190 125 5 67 255 104 285 1.96e-15 76.6
MS.gene26532.t1 MTR_3g055990 28.713 202 118 7 73 261 4 192 1.16e-13 72.8
MS.gene26532.t1 MTR_3g055990 28.713 202 118 7 73 261 4 192 1.25e-13 72.8
MS.gene26532.t1 MTR_1g080150 40.789 76 44 1 172 247 131 205 2.52e-13 69.7
MS.gene26532.t1 MTR_1g064230 28.571 196 123 3 77 256 86 280 6.32e-13 69.3
MS.gene26532.t1 MTR_5g097580 28.788 198 115 7 77 261 8 192 2.03e-12 68.9
MS.gene26532.t1 MTR_5g097580 28.788 198 115 7 77 261 8 192 3.17e-12 68.6
MS.gene26532.t1 MTR_7g118120 18.994 358 231 8 28 369 47 361 3.92e-12 68.2
MS.gene26532.t1 MTR_5g017280 25.507 345 205 10 86 393 15 344 4.05e-12 67.8
MS.gene26532.t1 MTR_6g004810 22.549 204 145 5 58 259 26 218 6.33e-12 67.0
MS.gene26532.t1 MTR_5g017280 25.507 345 205 10 86 393 15 344 7.26e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26532.t1 AT3G19130 63.636 385 104 8 2 375 43 402 5.14e-164 468
MS.gene26532.t1 AT1G49600 66.366 333 96 6 72 403 116 433 3.86e-154 443
MS.gene26532.t1 AT1G49600 68.475 295 83 2 72 366 116 400 2.70e-146 423
MS.gene26532.t1 AT1G49600 68.475 295 83 2 72 366 116 400 2.70e-146 423
MS.gene26532.t1 AT1G47490 56.522 391 137 9 30 407 48 418 6.43e-143 414
MS.gene26532.t1 AT1G47500 59.167 360 124 7 51 407 81 420 7.28e-139 404
MS.gene26532.t1 AT1G11650 54.683 331 123 6 72 400 59 364 1.86e-120 356
MS.gene26532.t1 AT5G19350 49.176 364 153 5 72 412 21 375 2.63e-118 351
MS.gene26532.t1 AT5G19350 49.315 365 155 5 72 412 21 379 1.03e-117 350
MS.gene26532.t1 AT5G54900 50.882 340 147 3 58 396 43 363 1.91e-115 342
MS.gene26532.t1 AT4G27000 56.436 303 110 4 73 374 78 359 1.12e-113 339
MS.gene26532.t1 AT1G11650 56.134 269 95 5 72 338 59 306 4.38e-103 308
MS.gene26532.t1 AT1G47490 53.929 280 98 7 30 297 48 308 4.41e-92 280
MS.gene26532.t1 AT1G47500 57.258 248 85 5 51 296 81 309 5.48e-87 267
MS.gene26532.t1 AT1G54080 31.579 361 201 12 11 366 26 345 3.32e-43 156
MS.gene26532.t1 AT1G54080 31.233 365 201 13 11 366 26 349 1.53e-41 152
MS.gene26532.t1 AT3G14100 33.555 301 181 9 71 366 55 341 8.03e-41 150
MS.gene26532.t1 AT1G17370 32.239 335 191 11 37 366 33 336 5.27e-40 147
MS.gene26532.t1 AT1G17370 32.537 335 187 12 37 366 33 333 1.13e-39 147
MS.gene26532.t1 AT4G34110 29.836 305 177 10 77 372 126 402 2.12e-25 108
MS.gene26532.t1 AT4G34110 26.071 280 163 8 76 350 37 277 2.99e-21 96.7
MS.gene26532.t1 AT2G23350 28.239 301 177 11 74 364 133 404 1.02e-24 107
MS.gene26532.t1 AT2G23350 25.874 286 160 10 74 350 45 287 3.84e-16 80.9
MS.gene26532.t1 AT2G23350 27.885 208 127 7 61 254 209 407 1.34e-14 76.3
MS.gene26532.t1 AT2G36660 25.000 288 170 7 76 358 25 271 9.70e-24 103
MS.gene26532.t1 AT2G36660 23.297 279 183 7 77 350 114 366 3.91e-14 74.7
MS.gene26532.t1 AT1G49760 26.246 301 193 7 77 372 135 411 1.88e-22 100
MS.gene26532.t1 AT1G49760 27.402 281 158 7 76 350 46 286 1.03e-19 92.0
MS.gene26532.t1 AT1G49760 26.246 301 193 7 77 372 135 411 1.88e-22 100
MS.gene26532.t1 AT1G49760 27.402 281 158 7 76 350 46 286 1.03e-19 92.0
MS.gene26532.t1 AT1G71770 25.763 295 188 9 77 364 148 418 4.34e-22 99.4
MS.gene26532.t1 AT1G71770 24.306 288 175 7 76 358 60 309 4.85e-19 89.7
MS.gene26532.t1 AT1G71770 25.763 295 188 9 77 364 148 418 4.34e-22 99.4
MS.gene26532.t1 AT1G71770 24.306 288 175 7 76 358 60 309 4.85e-19 89.7
MS.gene26532.t1 AT1G34140 25.676 296 185 8 77 365 33 300 9.52e-22 96.7
MS.gene26532.t1 AT1G34140 28.108 185 123 5 77 254 121 302 1.11e-12 69.7
MS.gene26532.t1 AT1G22760 24.731 372 182 12 76 363 50 407 4.31e-20 93.2
MS.gene26532.t1 AT1G22760 24.519 208 144 5 55 254 209 411 2.36e-12 69.3
MS.gene26532.t1 AT5G50250 32.778 180 115 3 71 250 110 283 1.13e-18 86.3
MS.gene26532.t1 AT4G24770 32.105 190 119 4 71 256 146 329 6.36e-18 84.7
MS.gene26532.t1 AT4G24770 32.105 190 119 4 71 256 146 329 6.36e-18 84.7
MS.gene26532.t1 AT2G18510 27.473 182 121 3 76 257 26 196 5.46e-17 82.4
MS.gene26532.t1 AT3G13224 28.125 192 128 5 75 265 10 192 1.01e-16 81.3
MS.gene26532.t1 AT3G16380 25.000 288 174 8 76 358 22 272 1.22e-16 82.4
MS.gene26532.t1 AT3G16380 25.430 291 179 10 77 358 114 375 3.36e-16 80.9
MS.gene26532.t1 AT3G52380 27.919 197 131 4 65 254 107 299 1.25e-16 80.9
MS.gene26532.t1 AT3G13224 28.042 189 126 5 77 264 21 200 2.37e-16 80.5
MS.gene26532.t1 AT4G26650 26.906 223 126 9 64 258 4 217 2.17e-14 75.1
MS.gene26532.t1 AT4G26650 26.108 203 124 7 163 353 4 192 5.80e-11 64.3
MS.gene26532.t1 AT4G26650 27.027 222 125 9 65 258 2 214 2.33e-14 75.1
MS.gene26532.t1 AT1G60000 29.730 185 122 5 71 254 80 257 2.60e-14 72.8
MS.gene26532.t1 AT3G04500 41.558 77 44 1 171 247 135 210 1.41e-13 70.5
MS.gene26532.t1 AT2G37220 27.500 200 122 4 77 256 93 289 1.05e-12 68.6
MS.gene26532.t1 AT2G37220 28.079 203 123 5 170 361 88 278 1.45e-11 65.1
MS.gene26532.t1 AT4G13850 40.741 81 47 1 175 255 37 116 1.96e-12 64.7
MS.gene26532.t1 AT2G33410 29.032 155 103 3 77 225 8 161 2.22e-12 68.6
MS.gene26532.t1 AT3G13224 28.395 162 107 4 77 238 21 173 2.59e-12 66.6
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 2.97e-12 68.6
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 2.97e-12 68.6
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 2.97e-12 68.6
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 2.97e-12 68.6
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 2.97e-12 68.6
MS.gene26532.t1 AT1G07360 37.255 102 60 2 285 385 220 318 3.55e-12 68.2
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.60e-12 68.2
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.60e-12 68.2
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.60e-12 68.2
MS.gene26532.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.60e-12 68.2
MS.gene26532.t1 AT4G13850 41.772 79 45 1 175 253 37 114 4.72e-12 63.9
MS.gene26532.t1 AT4G13850 41.772 79 45 1 175 253 37 114 5.74e-12 63.9
MS.gene26532.t1 AT3G07810 27.000 200 118 7 77 261 8 194 5.90e-12 67.8
MS.gene26532.t1 AT4G13850 41.772 79 45 1 175 253 37 114 6.38e-12 63.9
MS.gene26532.t1 AT3G07810 27.000 200 118 7 77 261 8 194 6.44e-12 67.4
MS.gene26532.t1 AT5G47620 26.630 184 121 5 77 253 8 184 1.89e-11 65.9
MS.gene26532.t1 AT5G47620 26.630 184 121 5 77 253 8 184 1.89e-11 65.9
MS.gene26532.t1 AT5G47620 26.630 184 121 5 77 253 8 184 1.89e-11 65.9
MS.gene26532.t1 AT2G29580 34.314 102 66 1 285 385 220 321 2.81e-11 65.5
MS.gene26532.t1 AT1G58470 28.492 179 114 7 175 346 8 179 6.54e-11 63.9
MS.gene26532.t1 AT1G58470 28.492 179 114 7 175 346 8 179 6.54e-11 63.9
MS.gene26532.t1 AT5G40490 25.414 181 118 4 77 254 44 210 7.32e-11 63.9

Find 112 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGCTGAGGAAGCAATTC+AGG 0.256444 4.1:-23272221 MS.gene26532:CDS
CGAAACGCCTGATCGGTATT+TGG 0.263962 4.1:+23274242 None:intergenic
ATCAGGCGTTTCGTCTGAAT+TGG 0.276433 4.1:-23274232 MS.gene26532:CDS
ACTGGTCAATCGGAGGGATA+TGG 0.328591 4.1:-23274332 MS.gene26532:CDS
GGATATGGTGGCCATGGATA+TGG 0.328731 4.1:-23271640 MS.gene26532:CDS
AGCAGACAGTGCGTCTTTCT+TGG 0.329108 4.1:-23272174 MS.gene26532:CDS
AAACTCACATGCTTATTTCC+TGG 0.336224 4.1:+23272142 None:intergenic
CATAACTGCTTTGCTCATAC+TGG 0.338799 4.1:-23275123 MS.gene26532:CDS
GCAGACAGTGCGTCTTTCTT+GGG 0.339350 4.1:-23272173 MS.gene26532:CDS
GGTTATGGAGGTCATGGATA+TGG 0.355121 4.1:-23271655 MS.gene26532:CDS
CTCTGTATTTGTGGGAGACT+TGG 0.355245 4.1:-23274147 MS.gene26532:CDS
CAACCCGCTGCTGCAGTTCA+AGG 0.361560 4.1:-23271574 MS.gene26532:CDS
CCCTTCAGATTGGGAACCTT+GGG 0.361796 4.1:+23272801 None:intergenic
AGGAATGACTCTAATGGTTA+TGG 0.376637 4.1:-23271670 MS.gene26532:CDS
CAGATCGTCCTGATCTCTTC+AGG 0.381114 4.1:+23275186 None:intergenic
ATCTGATCTCTCTGTATTTG+TGG 0.381754 4.1:-23274156 MS.gene26532:CDS
GGCTTGGTGACCTTCATCAT+TGG 0.396406 4.1:-23275164 MS.gene26532:CDS
TCAGGCGTTTCGTCTGAATT+GGG 0.404528 4.1:-23274231 MS.gene26532:CDS
TATCTGTTGCAGATATTTGT+TGG 0.405468 4.1:-23272694 MS.gene26532:intron
CATAGCATCAGTAACATCTA+TGG 0.413758 4.1:+23274124 None:intergenic
ATATGCTGCTAGACAAAATC+AGG 0.422308 4.1:-23271608 MS.gene26532:CDS
CCCCTTCAGATTGGGAACCT+TGG 0.423023 4.1:+23272800 None:intergenic
GGATTGAATGGAACAGTGAT+TGG 0.427017 4.1:-23272199 MS.gene26532:CDS
ACCTTGGGCCACAGCACCAT+TGG 0.430193 4.1:+23272816 None:intergenic
AGCTGGCGCCTGAAGAGATC+AGG 0.435334 4.1:-23275194 MS.gene26532:CDS
CAAGTGTCGCCGCCTCCGAC+GGG 0.435710 4.1:-23275273 MS.gene26532:CDS
GTCATACGTAATAAGCAAAC+TGG 0.435726 4.1:-23274350 MS.gene26532:CDS
GTTAGAATCCCCTTCAGATT+GGG 0.438640 4.1:+23272792 None:intergenic
GCAGCATCAGCAGAAGCAGC+TGG 0.446100 4.1:-23275211 MS.gene26532:CDS
CTTTCTTGGGGTCGCAGTCC+AGG 0.447144 4.1:-23272160 MS.gene26532:CDS
GGCTTATGTGCAGGTTGTAT+CGG 0.450307 4.1:-23274378 MS.gene26532:intron
GTGAAAATCCCAGTCGGTAA+AGG 0.454342 4.1:-23272601 MS.gene26532:CDS
TCTAATACTGGTCGTTCAAA+AGG 0.454872 4.1:-23274041 MS.gene26532:CDS
GTTGTTATTGACTCTAATAC+TGG 0.457060 4.1:-23274053 MS.gene26532:CDS
CTGAAGAGATCAGGACGATC+TGG 0.457665 4.1:-23275185 MS.gene26532:CDS
TCTGATCTCTCTGTATTTGT+GGG 0.467526 4.1:-23274155 MS.gene26532:CDS
TGTTAGAATCCCCTTCAGAT+TGG 0.468873 4.1:+23272791 None:intergenic
GCCCCTTGAACTGCAGCAGC+GGG 0.471724 4.1:+23271571 None:intergenic
ACATTCAGCGCTGCTGGTGG+TGG 0.474235 4.1:-23274206 MS.gene26532:CDS
TTCAGCGCTGCTGGTGGTGG+TGG 0.480349 4.1:-23274203 MS.gene26532:CDS
AACCCGCTGCTGCAGTTCAA+GGG 0.482024 4.1:-23271573 MS.gene26532:CDS
GAAGCAATTCAGGGATTGAA+TGG 0.482531 4.1:-23272211 MS.gene26532:CDS
TGGGCTACATTCAGCGCTGC+TGG 0.483566 4.1:-23274212 MS.gene26532:CDS
ATGGCGTTTATTGTTCTAGC+AGG 0.496066 4.1:-23273959 MS.gene26532:CDS
TAATAAGCAAACTGGTCAAT+CGG 0.501480 4.1:-23274342 MS.gene26532:CDS
AAAGTCTTGCAGAACTTCAA+TGG 0.502491 4.1:-23274275 MS.gene26532:CDS
GTAGTGTTGGCTGGTGGCGG+TGG 0.503654 4.1:-23272844 MS.gene26532:CDS
TCTTAAACTAGCTGTAGTGT+TGG 0.504172 4.1:-23272857 MS.gene26532:intron
AAACTAGCTGTAGTGTTGGC+TGG 0.505517 4.1:-23272853 MS.gene26532:intron
TCTAATGGTTATGGAGGTCA+TGG 0.506688 4.1:-23271661 MS.gene26532:CDS
GCTGATATTGATGCTGCTGA+TGG 0.508419 4.1:+23275232 None:intergenic
CTGCTGGTGGTGGTGGCGAA+AGG 0.509582 4.1:-23274196 MS.gene26532:CDS
TAATGATGAGGATGAACATA+AGG 0.511533 4.1:+23275321 None:intergenic
GCAAGTGTCGCCGCCTCCGA+CGG 0.514870 4.1:-23275274 MS.gene26532:CDS
GAGATCAGGACGATCTGGCT+TGG 0.515806 4.1:-23275180 MS.gene26532:CDS
TCCAATGGTGCTGTGGCCCA+AGG 0.516661 4.1:-23272817 MS.gene26532:CDS
AAACCACATCCTTTACCGAC+TGG 0.519643 4.1:+23272592 None:intergenic
TATGATGCCAAATACCGATC+AGG 0.523250 4.1:-23274249 MS.gene26532:CDS
AGCCCCTTGAACTGCAGCAG+CGG 0.525089 4.1:+23271570 None:intergenic
ACTGGTCGTTCAAAAGGCTA+TGG 0.525221 4.1:-23274035 MS.gene26532:CDS
AACCACATCCTTTACCGACT+GGG 0.528514 4.1:+23272593 None:intergenic
TGGTGACCTTCATCATTGGA+TGG 0.528713 4.1:-23275160 MS.gene26532:CDS
TTGCTTATTACGTATGACCT+TGG 0.529532 4.1:+23274355 None:intergenic
CTGTTGCAGATATTTGTTGG+AGG 0.534128 4.1:-23272691 MS.gene26532:intron
ACCCGCTGCTGCAGTTCAAG+GGG 0.535252 4.1:-23271572 MS.gene26532:CDS
GGTCATGGATATGGTGGCCA+TGG 0.539115 4.1:-23271646 MS.gene26532:CDS
ATCCATTACTTCCATATCCA+TGG 0.539208 4.1:+23271629 None:intergenic
CAGTGGAGGAATGACTCTAA+TGG 0.541519 4.1:-23271676 MS.gene26532:CDS
TGACTATGCCCCGTCGGAGG+CGG 0.541638 4.1:+23275264 None:intergenic
CCGACGGGGCATAGTCATCA+TGG 0.543230 4.1:-23275258 MS.gene26532:CDS
TCTCATCCATCCAATGATGA+AGG 0.546643 4.1:+23275154 None:intergenic
ATCCCAGTCGGTAAAGGATG+TGG 0.548381 4.1:-23272595 MS.gene26532:CDS
CCTTGCGAAGAATATTGTTG+TGG 0.552246 4.1:+23273891 None:intergenic
GGCCATGGATATGGAAGTAA+TGG 0.553720 4.1:-23271631 MS.gene26532:CDS
GCTGTAGTGTTGGCTGGTGG+CGG 0.557579 4.1:-23272847 MS.gene26532:CDS
GCCCAAGGTTCCCAATCTGA+AGG 0.557760 4.1:-23272802 MS.gene26532:CDS
CCACAACAATATTCTTCGCA+AGG 0.559021 4.1:-23273891 MS.gene26532:intron
AATGCTGAGGAAGCAATTCA+GGG 0.562076 4.1:-23272220 MS.gene26532:CDS
ATTCAGACGAAACGCCTGAT+CGG 0.563201 4.1:+23274235 None:intergenic
TGGCGAAAGGCGTTCTTCTG+AGG 0.563551 4.1:-23274183 MS.gene26532:CDS
ATCATAGCCATAGCAGTAGC+TGG 0.566838 4.1:+23275381 None:intergenic
GGCGACACTTGCTGTTGATG+AGG 0.567141 4.1:+23275285 None:intergenic
CTGCTTTGCTCATACTGGAG+AGG 0.568397 4.1:-23275118 MS.gene26532:intron
GGTGGCGGTGGACACTCCAA+TGG 0.577143 4.1:-23272832 MS.gene26532:CDS
CGAGTTCTATACGCGAGCAA+TGG 0.581423 4.1:-23274303 MS.gene26532:CDS
AGAGCAATGACTGAAATGAA+TGG 0.587516 4.1:-23273978 MS.gene26532:CDS
GACACTTGCTGTTGATGAGG+AGG 0.587949 4.1:+23275288 None:intergenic
CAGTTCAAGGGGCTTCCTAA+CGG 0.591153 4.1:-23271561 None:intergenic
CCCAAGGTTCCCAATCTGAA+GGG 0.591408 4.1:-23272801 MS.gene26532:CDS
GCAGTATCCAGCTACTGCTA+TGG 0.591918 4.1:-23275388 MS.gene26532:CDS
AAGCAAACTGGTCAATCGGA+GGG 0.598971 4.1:-23274338 MS.gene26532:CDS
AAGTGTCGCCGCCTCCGACG+GGG 0.600014 4.1:-23275272 MS.gene26532:CDS
CAGACAGTGCGTCTTTCTTG+GGG 0.601300 4.1:-23272172 MS.gene26532:CDS
TGGACACTCCAATGGTGCTG+TGG 0.602089 4.1:-23272824 MS.gene26532:CDS
CCATGATGACTATGCCCCGT+CGG 0.605517 4.1:+23275258 None:intergenic
TGTGCAGGTTGTATCGGCCA+AGG 0.610498 4.1:-23274372 MS.gene26532:intron
GGTTTGGTGATGAAAGTGAA+AGG 0.613030 4.1:-23274004 MS.gene26532:CDS
TAAGCAAACTGGTCAATCGG+AGG 0.614770 4.1:-23274339 MS.gene26532:CDS
ATCTCTGTGAAAATCCCAGT+CGG 0.624783 4.1:-23272607 MS.gene26532:CDS
AATGACTCTAATGGTTATGG+AGG 0.625005 4.1:-23271667 MS.gene26532:CDS
TCTAGCAGGCCTATGCGAGT+AGG 0.628642 4.1:-23273945 MS.gene26532:CDS
TGACTCTGACATTAGTGATG+AGG 0.629614 4.1:-23272665 MS.gene26532:CDS
GCTACATTCAGCGCTGCTGG+TGG 0.629809 4.1:-23274209 MS.gene26532:CDS
TATGGAGGTCATGGATATGG+TGG 0.629902 4.1:-23271652 MS.gene26532:CDS
CCAAGGTTCCCAATCTGAAG+GGG 0.630101 4.1:-23272800 MS.gene26532:CDS
TGATGACTATGCCCCGTCGG+AGG 0.632739 4.1:+23275261 None:intergenic
GTTGCAACACCTACTCGCAT+AGG 0.642755 4.1:+23273936 None:intergenic
GGCTGCTGCTGATAATGATG+AGG 0.650407 4.1:+23275309 None:intergenic
ATGTTACAGAAAGAATGCTG+AGG 0.670854 4.1:-23272233 MS.gene26532:intron
ACATAAGGCATATAATGCTG+AGG 0.677746 4.1:+23275336 None:intergenic
CTAGCTGTAGTGTTGGCTGG+TGG 0.692590 4.1:-23272850 MS.gene26532:intron
ACGGGGCATAGTCATCATGG+AGG 0.747794 4.1:-23275255 MS.gene26532:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTTAATAAACATCTA+TGG + chr4.1:23273538-23273557 None:intergenic 10.0%
!!! GGAAATTTTATAAAATAATT+TGG + chr4.1:23275060-23275079 None:intergenic 10.0%
!! AAAGTATAACTATCTTATAT+GGG + chr4.1:23272281-23272300 None:intergenic 15.0%
!! AAAGTTAAAACATTTAATCA+AGG + chr4.1:23272126-23272145 None:intergenic 15.0%
!!! AAAAGTATAACTATCTTATA+TGG + chr4.1:23272282-23272301 None:intergenic 15.0%
!!! AAATTTTCATTATAACTGAA+AGG - chr4.1:23273151-23273170 MS.gene26532:intron 15.0%
!!! AGTTTCTGTTTTTATATAAA+TGG - chr4.1:23271965-23271984 MS.gene26532:intron 15.0%
!!! ATATAAGATAGTTATACTTT+TGG - chr4.1:23272281-23272300 MS.gene26532:intron 15.0%
!! AAAAATAAGACGATACATAT+TGG + chr4.1:23274663-23274682 None:intergenic 20.0%
!! AACATTCAATAAATAGATTG+AGG + chr4.1:23273874-23273893 None:intergenic 20.0%
!! AATATCCTACAATACATTAT+TGG + chr4.1:23272446-23272465 None:intergenic 20.0%
!! ACAAAGAATTAAATTAGAGA+TGG + chr4.1:23275257-23275276 None:intergenic 20.0%
!! ACGACAATAAAAAAAAAGTT+TGG + chr4.1:23272531-23272550 None:intergenic 20.0%
!! ATGATATAAGATTACTTGAT+TGG + chr4.1:23275225-23275244 None:intergenic 20.0%
!! GTAAATATCATATTTGTTTC+TGG - chr4.1:23273410-23273429 MS.gene26532:intron 20.0%
!!! AAAAGTGAGAATTCATTTTA+GGG + chr4.1:23275188-23275207 None:intergenic 20.0%
!!! AGCAAATTTTCATCTATTAA+GGG - chr4.1:23272877-23272896 MS.gene26532:intron 20.0%
!!! GGCAGAAAAATTAATTTTTA+TGG - chr4.1:23273958-23273977 MS.gene26532:CDS 20.0%
!!! TAAAAATTAATTTTTCTGCC+TGG + chr4.1:23273958-23273977 None:intergenic 20.0%
!!! TAAAAGTGAGAATTCATTTT+AGG + chr4.1:23275189-23275208 None:intergenic 20.0%
!!! TAGCAAATTTTCATCTATTA+AGG - chr4.1:23272876-23272895 MS.gene26532:intron 20.0%
!!! TTAATTGCACTTTGAAAAAT+GGG - chr4.1:23272397-23272416 MS.gene26532:intron 20.0%
!!! TTGTTGTTATATTTTCACTT+TGG - chr4.1:23274863-23274882 MS.gene26532:intron 20.0%
!!! TTTGATTTGAGATTGATTTA+AGG - chr4.1:23272064-23272083 MS.gene26532:intron 20.0%
! ATATTAATATCAATCCAACC+AGG + chr4.1:23273197-23273216 None:intergenic 25.0%
! ATTGGACTCTTTAATGAATT+AGG - chr4.1:23272199-23272218 MS.gene26532:CDS 25.0%
! ATTTATTGCTGGAAGTTATT+AGG - chr4.1:23271993-23272012 MS.gene26532:intron 25.0%
! CTCAGTGATTAATTAAATCA+AGG + chr4.1:23272092-23272111 None:intergenic 25.0%
! CTTGATTTAATTAATCACTG+AGG - chr4.1:23272090-23272109 MS.gene26532:intron 25.0%
! GACTTCATAATCAAAATCTA+AGG + chr4.1:23275166-23275185 None:intergenic 25.0%
! TATGCATGAATATTTGTTTC+TGG - chr4.1:23273507-23273526 MS.gene26532:intron 25.0%
! TATTAATATCAATCCAACCA+GGG + chr4.1:23273196-23273215 None:intergenic 25.0%
! TTAAATCTCATATTTGTTCC+TGG - chr4.1:23273677-23273696 MS.gene26532:intron 25.0%
! TTGGACTCTTTAATGAATTA+GGG - chr4.1:23272200-23272219 MS.gene26532:CDS 25.0%
! TTTATTGCTGGAAGTTATTA+GGG - chr4.1:23271994-23272013 MS.gene26532:intron 25.0%
! TTTGTCCAATAATGTATTGT+AGG - chr4.1:23272438-23272457 MS.gene26532:intron 25.0%
!! ATCTTTTTGTGTGTGATTAT+TGG - chr4.1:23272181-23272200 MS.gene26532:CDS 25.0%
!! CTTAATTGCACTTTGAAAAA+TGG - chr4.1:23272396-23272415 MS.gene26532:intron 25.0%
!! TAATTGCACTTTGAAAAATG+GGG - chr4.1:23272398-23272417 MS.gene26532:intron 25.0%
!! TTCTTTTGATATCTCAGTAA+CGG - chr4.1:23274242-23274261 MS.gene26532:CDS 25.0%
!! TTTTCATTATAACTGAAAGG+AGG - chr4.1:23273154-23273173 MS.gene26532:intron 25.0%
!!! GTGCATATCTATTTTTATGT+TGG - chr4.1:23273246-23273265 MS.gene26532:intron 25.0%
AAAGTGCAATTAAGAGATCT+AGG + chr4.1:23272390-23272409 None:intergenic 30.0%
AACAGTATACATCATGAGAT+AGG + chr4.1:23273819-23273838 None:intergenic 30.0%
AACCAGGGAATTGAATTATT+AGG + chr4.1:23273181-23273200 None:intergenic 30.0%
AAGTATTCCTCAAATGGATA+GGG - chr4.1:23274516-23274535 MS.gene26532:intron 30.0%
ACATCACCAAATTGCAAAAA+TGG + chr4.1:23274332-23274351 None:intergenic 30.0%
ACGATCTATATCTATGCTAA+GGG + chr4.1:23274427-23274446 None:intergenic 30.0%
AGCACACTTACAAATAAAAC+AGG + chr4.1:23273316-23273335 None:intergenic 30.0%
GCAAGTCTAGTTAAAAACAT+TGG + chr4.1:23272359-23272378 None:intergenic 30.0%
GTATGATGAATAAATCGAAG+TGG - chr4.1:23273290-23273309 MS.gene26532:intron 30.0%
GTTAAAAACATTGGTCAACA+AGG + chr4.1:23272350-23272369 None:intergenic 30.0%
GTTATGCATGAATTCAAACA+TGG - chr4.1:23273481-23273500 MS.gene26532:intron 30.0%
TAAGTATTCCTCAAATGGAT+AGG - chr4.1:23274515-23274534 MS.gene26532:intron 30.0%
TAATAAGCAAACTGGTCAAT+CGG - chr4.1:23272618-23272637 MS.gene26532:CDS 30.0%
TAATAATTCAATTCCCTGGT+TGG - chr4.1:23273180-23273199 MS.gene26532:intron 30.0%
TAATGATGAGGATGAACATA+AGG + chr4.1:23271642-23271661 None:intergenic 30.0%
TACGATCTATATCTATGCTA+AGG + chr4.1:23274428-23274447 None:intergenic 30.0%
TATCTGTTGCAGATATTTGT+TGG - chr4.1:23274266-23274285 MS.gene26532:CDS 30.0%
TGCAAGGAAATATAACAAAG+TGG + chr4.1:23273775-23273794 None:intergenic 30.0%
TTAGTACACAAACTTAGAAC+AGG + chr4.1:23274935-23274954 None:intergenic 30.0%
TTGACTCTTGTGATTTAAGT+TGG - chr4.1:23272230-23272249 MS.gene26532:intron 30.0%
TTGGTCATAAATGCGATAAT+CGG + chr4.1:23272512-23272531 None:intergenic 30.0%
TTTAGTAGTGTAAGCAATAC+AGG - chr4.1:23274974-23274993 MS.gene26532:intron 30.0%
! AAATGGTCTTGATTTATTGC+TGG - chr4.1:23271982-23272001 MS.gene26532:intron 30.0%
! TGACTTTTCAATACAAGTCT+TGG - chr4.1:23273358-23273377 MS.gene26532:intron 30.0%
! TTTTATTGTCGTCTTCTGAT+TGG - chr4.1:23272539-23272558 MS.gene26532:intron 30.0%
!! AGACAACCATTTTTGCAATT+TGG - chr4.1:23274323-23274342 MS.gene26532:CDS 30.0%
!! GTTGTTATTGACTCTAATAC+TGG - chr4.1:23272907-23272926 MS.gene26532:intron 30.0%
!!! GGATTGCCATAAGTTTTTTT+GGG + chr4.1:23273051-23273070 None:intergenic 30.0%
!!! GTATCGTCTTATTTTTGACT+GGG - chr4.1:23274667-23274686 MS.gene26532:intron 30.0%
!!! GTTTGTTGATGTTTTTTCGT+TGG - chr4.1:23272561-23272580 MS.gene26532:intron 30.0%
!!! TGGATTGCCATAAGTTTTTT+TGG + chr4.1:23273052-23273071 None:intergenic 30.0%
!!! TGTATCGTCTTATTTTTGAC+TGG - chr4.1:23274666-23274685 MS.gene26532:intron 30.0%
AAACTCACATGCTTATTTCC+TGG + chr4.1:23274821-23274840 None:intergenic 35.0%
AAAGTCTTGCAGAACTTCAA+TGG - chr4.1:23272685-23272704 MS.gene26532:CDS 35.0%
AATGACTCTAATGGTTATGG+AGG - chr4.1:23275293-23275312 MS.gene26532:CDS 35.0%
ACATAAGGCATATAATGCTG+AGG + chr4.1:23271627-23271646 None:intergenic 35.0%
AGAATCTTGAATGCATAACC+AGG - chr4.1:23273937-23273956 MS.gene26532:CDS 35.0%
AGAGCAATGACTGAAATGAA+TGG - chr4.1:23272982-23273001 MS.gene26532:intron 35.0%
AGCGCACTTACAAATAAAAC+AGG + chr4.1:23273586-23273605 None:intergenic 35.0%
AGGAATGACTCTAATGGTTA+TGG - chr4.1:23275290-23275309 MS.gene26532:CDS 35.0%
ATACATCATGAGATAGGCAA+GGG + chr4.1:23273813-23273832 None:intergenic 35.0%
ATATGCTGCTAGACAAAATC+AGG - chr4.1:23275352-23275371 MS.gene26532:CDS 35.0%
ATCCATTACTTCCATATCCA+TGG + chr4.1:23275334-23275353 None:intergenic 35.0%
ATCTGATCTCTCTGTATTTG+TGG - chr4.1:23272804-23272823 MS.gene26532:CDS 35.0%
ATGAAGAGTTGGCATAATCA+AGG + chr4.1:23274545-23274564 None:intergenic 35.0%
ATGTTACAGAAAGAATGCTG+AGG - chr4.1:23274727-23274746 MS.gene26532:intron 35.0%
CATAGCATCAGTAACATCTA+TGG + chr4.1:23272839-23272858 None:intergenic 35.0%
GCAACACCCAAAAAAACTTA+TGG - chr4.1:23273042-23273061 MS.gene26532:intron 35.0%
GTCATACGTAATAAGCAAAC+TGG - chr4.1:23272610-23272629 MS.gene26532:CDS 35.0%
GTCCTAATAATTCAATTCCC+TGG - chr4.1:23273176-23273195 MS.gene26532:intron 35.0%
TATACATCATGAGATAGGCA+AGG + chr4.1:23273814-23273833 None:intergenic 35.0%
TCTAATACTGGTCGTTCAAA+AGG - chr4.1:23272919-23272938 MS.gene26532:intron 35.0%
TCTGATCTCTCTGTATTTGT+GGG - chr4.1:23272805-23272824 MS.gene26532:CDS 35.0%
TCTGTAACATAAAGAGCAGA+AGG + chr4.1:23274717-23274736 None:intergenic 35.0%
TCTTAAACTAGCTGTAGTGT+TGG - chr4.1:23274103-23274122 MS.gene26532:CDS 35.0%
TGGCATAAGTATTCCTCAAA+TGG - chr4.1:23274510-23274529 MS.gene26532:intron 35.0%
TTGCTTATTACGTATGACCT+TGG + chr4.1:23272608-23272627 None:intergenic 35.0%
TTTCACTTTGGCCATCTAAT+GGG - chr4.1:23274875-23274894 MS.gene26532:intron 35.0%
! ATGCTGAAGGTATATGAATG+CGG + chr4.1:23275081-23275100 None:intergenic 35.0%
! CTCGTAATTTTCCCATTAGA+TGG + chr4.1:23274889-23274908 None:intergenic 35.0%
! TATACTTTTGGTACCCTAAG+TGG - chr4.1:23272293-23272312 MS.gene26532:intron 35.0%
! TGGTTTCCTTTTTCTATCCT+TGG - chr4.1:23272250-23272269 MS.gene26532:intron 35.0%
! TTTTCACTTTGGCCATCTAA+TGG - chr4.1:23274874-23274893 MS.gene26532:intron 35.0%
!! TTCCTGGCTTTATGCATTAA+TGG - chr4.1:23273693-23273712 MS.gene26532:intron 35.0%
!!! CAAAAGGCTATGGTTTTGTT+AGG - chr4.1:23272935-23272954 MS.gene26532:intron 35.0%
AAGGATTCCCTATCCATTTG+AGG + chr4.1:23274526-23274545 None:intergenic 40.0%
AATGCTGAGGAAGCAATTCA+GGG - chr4.1:23274740-23274759 MS.gene26532:intron 40.0%
AATTCTTTGTGATGTCGCAG+TGG - chr4.1:23275267-23275286 MS.gene26532:CDS 40.0%
AGCAACTAGTTACATGCTGA+AGG + chr4.1:23275094-23275113 None:intergenic 40.0%
ATCTCTGTGAAAATCCCAGT+CGG - chr4.1:23274353-23274372 MS.gene26532:CDS 40.0%
ATCTTATATGGGCAATGCCA+AGG + chr4.1:23272270-23272289 None:intergenic 40.0%
ATGGCGTTTATTGTTCTAGC+AGG - chr4.1:23273001-23273020 MS.gene26532:intron 40.0%
CAATGTCTAAGCGTCAAAGT+CGG + chr4.1:23272489-23272508 None:intergenic 40.0%
CATAACTGCTTTGCTCATAC+TGG - chr4.1:23271837-23271856 MS.gene26532:intron 40.0%
CCACAACAATATTCTTCGCA+AGG - chr4.1:23273069-23273088 MS.gene26532:intron 40.0%
CCTTGCGAAGAATATTGTTG+TGG + chr4.1:23273072-23273091 None:intergenic 40.0%
GAAGCAATTCAGGGATTGAA+TGG - chr4.1:23274749-23274768 MS.gene26532:intron 40.0%
GAATAGATTCAAGTGGTGCA+AGG + chr4.1:23273791-23273810 None:intergenic 40.0%
GCAATGCCAAGGATAGAAAA+AGG + chr4.1:23272259-23272278 None:intergenic 40.0%
GGATTGAATGGAACAGTGAT+TGG - chr4.1:23274761-23274780 MS.gene26532:intron 40.0%
GTCCATTAATGCATAAAGCC+AGG + chr4.1:23273698-23273717 None:intergenic 40.0%
GTTAGAATCCCCTTCAGATT+GGG + chr4.1:23274171-23274190 None:intergenic 40.0%
GTTTCTTGCGAAATGAACAG+TGG - chr4.1:23274490-23274509 MS.gene26532:intron 40.0%
TAACACGAGAGAGTTATCAC+TGG - chr4.1:23274021-23274040 MS.gene26532:CDS 40.0%
TATGATGCCAAATACCGATC+AGG - chr4.1:23272711-23272730 MS.gene26532:intron 40.0%
TCATCCTGTGGAATCATGTA+AGG - chr4.1:23274561-23274580 MS.gene26532:intron 40.0%
TCATCCTTACATGATTCCAC+AGG + chr4.1:23274568-23274587 None:intergenic 40.0%
TCTAATGGTTATGGAGGTCA+TGG - chr4.1:23275299-23275318 MS.gene26532:CDS 40.0%
TCTCATCCATCCAATGATGA+AGG + chr4.1:23271809-23271828 None:intergenic 40.0%
TGACTCTGACATTAGTGATG+AGG - chr4.1:23274295-23274314 MS.gene26532:CDS 40.0%
TGTGGAATCATGTAAGGATG+AGG - chr4.1:23274567-23274586 MS.gene26532:intron 40.0%
TGTTAGAATCCCCTTCAGAT+TGG + chr4.1:23274172-23274191 None:intergenic 40.0%
TTTCGGCCTTCAAAACTCTA+GGG + chr4.1:23272321-23272340 None:intergenic 40.0%
! CTGTTGCAGATATTTGTTGG+AGG - chr4.1:23274269-23274288 MS.gene26532:CDS 40.0%
! GGTCAACAAGGTCACATTTT+CGG + chr4.1:23272338-23272357 None:intergenic 40.0%
! TGAAGTATCTGCAGCAGAAA+AGG + chr4.1:23273132-23273151 None:intergenic 40.0%
! TTTTCGGCCTTCAAAACTCT+AGG + chr4.1:23272322-23272341 None:intergenic 40.0%
!! AAGGTTGGTGCTGATTTAAG+TGG + chr4.1:23273113-23273132 None:intergenic 40.0%
!! GGTTTGGTGATGAAAGTGAA+AGG - chr4.1:23272956-23272975 MS.gene26532:intron 40.0%
!!! GGCTATGGTTTTGTTAGGTT+TGG - chr4.1:23272940-23272959 MS.gene26532:intron 40.0%
!!! GTTTTGTTCAACTTGCTGAC+AGG - chr4.1:23274387-23274406 MS.gene26532:intron 40.0%
!!! TCGTCTTATTTTTGACTGGG+TGG - chr4.1:23274670-23274689 MS.gene26532:intron 40.0%
!!! TTTTTCGTTGGCTTATGTGC+AGG - chr4.1:23272573-23272592 MS.gene26532:intron 40.0%
AAACCACATCCTTTACCGAC+TGG + chr4.1:23274371-23274390 None:intergenic 45.0%
AAGCAAACTGGTCAATCGGA+GGG - chr4.1:23272622-23272641 MS.gene26532:CDS 45.0%
ACACAACTGTGAGTCTGCTT+TGG - chr4.1:23274192-23274211 MS.gene26532:CDS 45.0%
ACTGGTCGTTCAAAAGGCTA+TGG - chr4.1:23272925-23272944 MS.gene26532:intron 45.0%
ATCAGGCGTTTCGTCTGAAT+TGG - chr4.1:23272728-23272747 MS.gene26532:intron 45.0%
ATCATAGCCATAGCAGTAGC+TGG + chr4.1:23271582-23271601 None:intergenic 45.0%
ATTCAGACGAAACGCCTGAT+CGG + chr4.1:23272728-23272747 None:intergenic 45.0%
CAGTGGAGGAATGACTCTAA+TGG - chr4.1:23275284-23275303 MS.gene26532:CDS 45.0%
CTCTGTATTTGTGGGAGACT+TGG - chr4.1:23272813-23272832 MS.gene26532:CDS 45.0%
GAATGCTGAGGAAGCAATTC+AGG - chr4.1:23274739-23274758 MS.gene26532:intron 45.0%
GATTCCACAGGATGAAGAGT+TGG + chr4.1:23274556-23274575 None:intergenic 45.0%
GCTGATATTGATGCTGCTGA+TGG + chr4.1:23271731-23271750 None:intergenic 45.0%
GCTGGAAGTTATTAGGGTAC+AGG - chr4.1:23272000-23272019 MS.gene26532:intron 45.0%
GGCAAGGGAATAGATTCAAG+TGG + chr4.1:23273798-23273817 None:intergenic 45.0%
GGCCATGGATATGGAAGTAA+TGG - chr4.1:23275329-23275348 MS.gene26532:CDS 45.0%
GGCTTATGTGCAGGTTGTAT+CGG - chr4.1:23272582-23272601 MS.gene26532:CDS 45.0%
GGTTATGGAGGTCATGGATA+TGG - chr4.1:23275305-23275324 MS.gene26532:CDS 45.0%
GTATCTGCAGCAGAAAAGGT+TGG + chr4.1:23273128-23273147 None:intergenic 45.0%
GTGAAAATCCCAGTCGGTAA+AGG - chr4.1:23274359-23274378 MS.gene26532:CDS 45.0%
TAAGCAAACTGGTCAATCGG+AGG - chr4.1:23272621-23272640 MS.gene26532:CDS 45.0%
TATGCCAACTCTTCATCCTG+TGG - chr4.1:23274549-23274568 MS.gene26532:intron 45.0%
TATGGAGGTCATGGATATGG+TGG - chr4.1:23275308-23275327 MS.gene26532:CDS 45.0%
TCAGGCGTTTCGTCTGAATT+GGG - chr4.1:23272729-23272748 MS.gene26532:intron 45.0%
TGGTGACCTTCATCATTGGA+TGG - chr4.1:23271800-23271819 MS.gene26532:intron 45.0%
TTCGGCCTTCAAAACTCTAG+GGG + chr4.1:23272320-23272339 None:intergenic 45.0%
! AAAACTCTAGGGGACCACTT+AGG + chr4.1:23272310-23272329 None:intergenic 45.0%
! AAACTCTAGGGGACCACTTA+GGG + chr4.1:23272309-23272328 None:intergenic 45.0%
! AACCACATCCTTTACCGACT+GGG + chr4.1:23274370-23274389 None:intergenic 45.0%
!! AAACTAGCTGTAGTGTTGGC+TGG - chr4.1:23274107-23274126 MS.gene26532:CDS 45.0%
ACTGGTCAATCGGAGGGATA+TGG - chr4.1:23272628-23272647 MS.gene26532:CDS 50.0%
AGCAGACAGTGCGTCTTTCT+TGG - chr4.1:23274786-23274805 MS.gene26532:intron 50.0%
ATCCCAGTCGGTAAAGGATG+TGG - chr4.1:23274365-23274384 MS.gene26532:CDS 50.0%
CAGACAGTGCGTCTTTCTTG+GGG - chr4.1:23274788-23274807 MS.gene26532:intron 50.0%
CAGATCGTCCTGATCTCTTC+AGG + chr4.1:23271777-23271796 None:intergenic 50.0%
CCAAGGTTCCCAATCTGAAG+GGG - chr4.1:23274160-23274179 MS.gene26532:CDS 50.0%
CCCAAGGTTCCCAATCTGAA+GGG - chr4.1:23274159-23274178 MS.gene26532:CDS 50.0%
CCCTTCAGATTGGGAACCTT+GGG + chr4.1:23274162-23274181 None:intergenic 50.0%
CGAAACGCCTGATCGGTATT+TGG + chr4.1:23272721-23272740 None:intergenic 50.0%
CGAGTTCTATACGCGAGCAA+TGG - chr4.1:23272657-23272676 MS.gene26532:CDS 50.0%
CTGAAGAGATCAGGACGATC+TGG - chr4.1:23271775-23271794 MS.gene26532:intron 50.0%
CTGCTTTGCTCATACTGGAG+AGG - chr4.1:23271842-23271861 MS.gene26532:intron 50.0%
CTTGCTGACAGGTACACTTG+TGG - chr4.1:23274398-23274417 MS.gene26532:intron 50.0%
GCAGACAGTGCGTCTTTCTT+GGG - chr4.1:23274787-23274806 MS.gene26532:intron 50.0%
GCAGTATCCAGCTACTGCTA+TGG - chr4.1:23271572-23271591 MS.gene26532:CDS 50.0%
GGATATGGTGGCCATGGATA+TGG - chr4.1:23275320-23275339 MS.gene26532:CDS 50.0%
GTCTCGTTCTCTCTGTAAGC+AGG - chr4.1:23274908-23274927 MS.gene26532:intron 50.0%
GTTGCAACACCTACTCGCAT+AGG + chr4.1:23273027-23273046 None:intergenic 50.0%
TCTTTGTGATGTCGCAGTGG+AGG - chr4.1:23275270-23275289 MS.gene26532:CDS 50.0%
! GGCTGCTGCTGATAATGATG+AGG + chr4.1:23271654-23271673 None:intergenic 50.0%
!! GACACTTGCTGTTGATGAGG+AGG + chr4.1:23271675-23271694 None:intergenic 50.0%
!! GGCTTGGTGACCTTCATCAT+TGG - chr4.1:23271796-23271815 MS.gene26532:intron 50.0%
!! GTGGTCCCCTAGAGTTTTGA+AGG - chr4.1:23272312-23272331 MS.gene26532:intron 50.0%
AACCCGCTGCTGCAGTTCAA+GGG - chr4.1:23275387-23275406 MS.gene26532:CDS 55.0%
ACGGGGCATAGTCATCATGG+AGG - chr4.1:23271705-23271724 MS.gene26532:intron 55.0%
CCATGATGACTATGCCCCGT+CGG + chr4.1:23271705-23271724 None:intergenic 55.0%
CCCCTTCAGATTGGGAACCT+TGG + chr4.1:23274163-23274182 None:intergenic 55.0%
GAGATCAGGACGATCTGGCT+TGG - chr4.1:23271780-23271799 MS.gene26532:intron 55.0%
GCCCAAGGTTCCCAATCTGA+AGG - chr4.1:23274158-23274177 MS.gene26532:CDS 55.0%
GGTCATGGATATGGTGGCCA+TGG - chr4.1:23275314-23275333 MS.gene26532:CDS 55.0%
TCTAGCAGGCCTATGCGAGT+AGG - chr4.1:23273015-23273034 MS.gene26532:intron 55.0%
! TGGACACTCCAATGGTGCTG+TGG - chr4.1:23274136-23274155 MS.gene26532:CDS 55.0%
! TGTGCAGGTTGTATCGGCCA+AGG - chr4.1:23272588-23272607 MS.gene26532:CDS 55.0%
!! CTAGCTGTAGTGTTGGCTGG+TGG - chr4.1:23274110-23274129 MS.gene26532:CDS 55.0%
!! GGCGACACTTGCTGTTGATG+AGG + chr4.1:23271678-23271697 None:intergenic 55.0%
!! TGGCGAAAGGCGTTCTTCTG+AGG - chr4.1:23272777-23272796 MS.gene26532:intron 55.0%
AAACCGCCCACTGTGCTGTG+GGG + chr4.1:23274474-23274493 None:intergenic 60.0%
ACATTCAGCGCTGCTGGTGG+TGG - chr4.1:23272754-23272773 MS.gene26532:intron 60.0%
ACCCGCTGCTGCAGTTCAAG+GGG - chr4.1:23275388-23275407 MS.gene26532:CDS 60.0%
ACCTTGGGCCACAGCACCAT+TGG + chr4.1:23274147-23274166 None:intergenic 60.0%
AGAAACCGCCCACTGTGCTG+TGG + chr4.1:23274476-23274495 None:intergenic 60.0%
AGCCCCTTGAACTGCAGCAG+CGG + chr4.1:23275393-23275412 None:intergenic 60.0%
AGCTGGCGCCTGAAGAGATC+AGG - chr4.1:23271766-23271785 MS.gene26532:intron 60.0%
CAACCCGCTGCTGCAGTTCA+AGG - chr4.1:23275386-23275405 MS.gene26532:CDS 60.0%
CCGACGGGGCATAGTCATCA+TGG - chr4.1:23271702-23271721 MS.gene26532:intron 60.0%
CTTTCTTGGGGTCGCAGTCC+AGG - chr4.1:23274800-23274819 MS.gene26532:intron 60.0%
GAAACCGCCCACTGTGCTGT+GGG + chr4.1:23274475-23274494 None:intergenic 60.0%
GCAGCATCAGCAGAAGCAGC+TGG - chr4.1:23271749-23271768 MS.gene26532:intron 60.0%
GCTACATTCAGCGCTGCTGG+TGG - chr4.1:23272751-23272770 MS.gene26532:intron 60.0%
TGATGACTATGCCCCGTCGG+AGG + chr4.1:23271702-23271721 None:intergenic 60.0%
TGCAACCCCCACAGCACAGT+GGG - chr4.1:23274465-23274484 MS.gene26532:intron 60.0%
TGGGCTACATTCAGCGCTGC+TGG - chr4.1:23272748-23272767 MS.gene26532:intron 60.0%
TTGCAACCCCCACAGCACAG+TGG - chr4.1:23274464-23274483 MS.gene26532:intron 60.0%
!! GCTGTAGTGTTGGCTGGTGG+CGG - chr4.1:23274113-23274132 MS.gene26532:CDS 60.0%
!! TCCAATGGTGCTGTGGCCCA+AGG - chr4.1:23274143-23274162 MS.gene26532:CDS 60.0%
AACCCCCACAGCACAGTGGG+CGG - chr4.1:23274468-23274487 MS.gene26532:intron 65.0%
AACCGCCCACTGTGCTGTGG+GGG + chr4.1:23274473-23274492 None:intergenic 65.0%
GCCCCTTGAACTGCAGCAGC+GGG + chr4.1:23275392-23275411 None:intergenic 65.0%
TGACTATGCCCCGTCGGAGG+CGG + chr4.1:23271699-23271718 None:intergenic 65.0%
! GGTGGCGGTGGACACTCCAA+TGG - chr4.1:23274128-23274147 MS.gene26532:CDS 65.0%
!! CTGCTGGTGGTGGTGGCGAA+AGG - chr4.1:23272764-23272783 MS.gene26532:intron 65.0%
!! GTAGTGTTGGCTGGTGGCGG+TGG - chr4.1:23274116-23274135 MS.gene26532:CDS 65.0%
!! TTCAGCGCTGCTGGTGGTGG+TGG - chr4.1:23272757-23272776 MS.gene26532:intron 65.0%
! AAGTGTCGCCGCCTCCGACG+GGG - chr4.1:23271688-23271707 MS.gene26532:intron 70.0%
! CAAGTGTCGCCGCCTCCGAC+GGG - chr4.1:23271687-23271706 MS.gene26532:intron 70.0%
! GCAAGTGTCGCCGCCTCCGA+CGG - chr4.1:23271686-23271705 MS.gene26532:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 23271564 23275418 23271564 ID=MS.gene26532
chr4.1 mRNA 23271564 23275418 23271564 ID=MS.gene26532.t1;Parent=MS.gene26532
chr4.1 exon 23275119 23275418 23275119 ID=MS.gene26532.t1.exon1;Parent=MS.gene26532.t1
chr4.1 CDS 23275119 23275418 23275119 ID=cds.MS.gene26532.t1;Parent=MS.gene26532.t1
chr4.1 exon 23273892 23274387 23273892 ID=MS.gene26532.t1.exon2;Parent=MS.gene26532.t1
chr4.1 CDS 23273892 23274387 23273892 ID=cds.MS.gene26532.t1;Parent=MS.gene26532.t1
chr4.1 exon 23272783 23272868 23272783 ID=MS.gene26532.t1.exon3;Parent=MS.gene26532.t1
chr4.1 CDS 23272783 23272868 23272783 ID=cds.MS.gene26532.t1;Parent=MS.gene26532.t1
chr4.1 exon 23272574 23272704 23272574 ID=MS.gene26532.t1.exon4;Parent=MS.gene26532.t1
chr4.1 CDS 23272574 23272704 23272574 ID=cds.MS.gene26532.t1;Parent=MS.gene26532.t1
chr4.1 exon 23272150 23272246 23272150 ID=MS.gene26532.t1.exon5;Parent=MS.gene26532.t1
chr4.1 CDS 23272150 23272246 23272150 ID=cds.MS.gene26532.t1;Parent=MS.gene26532.t1
chr4.1 exon 23271564 23271695 23271564 ID=MS.gene26532.t1.exon6;Parent=MS.gene26532.t1
chr4.1 CDS 23271564 23271695 23271564 ID=cds.MS.gene26532.t1;Parent=MS.gene26532.t1
Gene Sequence

>MS.gene26532

ATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAACAGCAGATGATGATGTATCCTCAGCATTATATGCCTTATGTTCATCCTCATCATTATCAGCAGCAGCCTCCTCATCAACAGCAAGTGTCGCCGCCTCCGACGGGGCATAGTCATCATGGAGGCCATCAGCAGCATCAATATCAGCAGCATCAGCAGAAGCAGCTGGCGCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGATGAGACTTTTCTTCATAACTGCTTTGCTCATACTGGAGAGGTTTATTTCTATCTCTTTAATTGTAATTGAATTTGTTAGATTCGTTGTTTTAATTTCAATATTAATATGCTTCATTTGCTTAATTAATAGCATATCTTGTTAGTTTCTGTTTTTATATAAATGGTCTTGATTTATTGCTGGAAGTTATTAGGGTACAGGCTTCTTTGTTTAATTTGCTGATTTGAATTTTTTTTTTTTTTTTTGATTTGAGATTGATTTAAGGAGCCTTGATTTAATTAATCACTGAGGATTTGTTGAACCTTGATTAAATGTTTTAACTTTTAAGCTATGATTTCGAGTTTAATTTAAGTTCATCGATCTTTTTGTGTGTGATTATTGGACTCTTTAATGAATTAGGGTTGTAAATTGACTCTTGTGATTTAAGTTGGTTTCCTTTTTCTATCCTTGGCATTGCCCATATAAGATAGTTATACTTTTGGTACCCTAAGTGGTCCCCTAGAGTTTTGAAGGCCGAAAATGTGACCTTGTTGACCAATGTTTTTAACTAGACTTGCTAGTATAACCTAGATCTCTTAATTGCACTTTGAAAAATGGGGCTAATCAAAATTTGCTTTTTGTCCAATAATGTATTGTAGGATATTCACATGTTAAATATCAATAGCCGACTTTGACGCTTAGACATTGCCGATTATCGCATTTATGACCAAACTTTTTTTTTATTGTCGTCTTCTGATTGGTTTGTTGATGTTTTTTCGTTGGCTTATGTGCAGGTTGTATCGGCCAAGGTCATACGTAATAAGCAAACTGGTCAATCGGAGGGATATGGATTTGTCGAGTTCTATACGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTCAATGGTACTATGATGCCAAATACCGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGCGCTGCTGGTGGTGGTGGCGAAAGGCGTTCTTCTGAGGCTACATCTGATCTCTCTGTATTTGTGGGAGACTTGGCCATAGATGTTACTGATGCTATGCTTCAAGAGACGTTTGCTAGCAAATTTTCATCTATTAAGGGAGCAAAAGTTGTTATTGACTCTAATACTGGTCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAGTGAAAGGACAAGAGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACACCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCGCAAGGTTTGTTATTTAATTATTACCACTTAAATCAGCACCAACCTTTTCTGCTGCAGATACTTCAAATTTTCATTATAACTGAAAGGAGGTCCTAATAATTCAATTCCCTGGTTGGATTGATATTAATATTTTCTTTAATGATTTGTTTGATTTCATTTGTGCATATCTATTTTTATGTTGGTTAAAATTTGAATATTAACATGTATGATGAATAAATCGAAGTGGCCTGTTTTATTTGTAAGTGTGCTTTATGATTTCAGTAATCATACTTGACTTTTCAATACAAGTCTTGGAGCTTGTTGCATCTTAAATATGTTAATTCGTAAATATCATATTTGTTTCTGGCTTTATTCATGAATTTAAACATGTGTGATAAATAAATTGTGAAGAATAGTTATGCATGAATTCAAACATGGCTTTATGCATGAATATTTGTTTCTGGCTTTACCATAGATGTTTATTAAATATAAACATGTATGTTAATTTGTAAGTTAGCCTGTTTTATTTGTAAGTGCGCTTTAGTATTCATAGTTGACTTTTCAATACAAGTCTCTGAGCTTGTTACTTCTTAAATATGTTAATTCGTATATTAAATCTCATATTTGTTCCTGGCTTTATGCATTAATGGACTTGCGCTTTTTATTTTTGACAATTGCTTATTGCAGATTTTTCTATGCTTTTGCACCACTTTGTTATATTTCCTTGCACCACTTGAATCTATTCCCTTGCCTATCTCATGATGTATACTGTTTGATGTCTAAACGACAAGTTTGTATTTTTCAACCTCAATCTATTTATTGAATGTTAGTGATGTATGTTTATAGATTTTTTTTTTTTTTTTTGTAATTTAGAATCTTGAATGCATAACCAGGCAGAAAAATTAATTTTTATGGCATATATATTGCAAAGCTTTCTTGTTTATGTTTATGTTTATAACACGAGAGAGTTATCACTGGAATGCAGTAATATCACGTATCATGCTTCAGAATTTTAAATCACTGACATTTTTTTTCTTTCTTAAACTAGCTGTAGTGTTGGCTGGTGGCGGTGGACACTCCAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTGTGAGTCTGCTTTGGTAGCTTTTTCTATATCTTTTAATCAACTTCTTTTGATATCTCAGTAACGGATATCTGTTGCAGATATTTGTTGGAGGACTTGACTCTGACATTAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGATGTAATCTCTGTGAAAATCCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGGTACACTTGTGGTATCCCTTAGCATAGATATAGATCGTAACTTGCTTGCAAGTCATTGCAACCCCCACAGCACAGTGGGCGGTTTCTTGCGAAATGAACAGTGGCATAAGTATTCCTCAAATGGATAGGGAATCCTTGATTATGCCAACTCTTCATCCTGTGGAATCATGTAAGGATGAGGATATGATAATAAAGAAAGTTGATGTGAACTACTGTATAAGATGCTATGATTCTGATTGCAATTGTAACTGCCAATATGTATCGTCTTATTTTTGACTGGGTGGATTAGCTATGTTTTAATAATGCCTTCTGCTCTTTATGTTACAGAAAGAATGCTGAGGAAGCAATTCAGGGATTGAATGGAACAGTGATTGGAAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATGTGAGTTTATTATTCTGCTCTGAATTCAATTTGTTGTTATATTTTCACTTTGGCCATCTAATGGGAAAATTACGAGTCTCGTTCTCTCTGTAAGCAGGTCCTGTTCTAAGTTTGTGTACTAAATCTGTGAAACTAATTGTTTTTAGTAGTGTAAGCAATACAGGCATCAGTGTACTAAATGTGTTGTATATTTTCTATTATGAGCTGCATCTTCTACTTACAAACCAAATTATTTTATAAAATTTCCGCATTCATATACCTTCAGCATGTAACTAGTTGCTACTAAGAGTTTTCAATTAGCATATACATACACTTTTTAATTTCTTTTCACCTTAGATTTTGATTATGAAGTCCCTAAAATGAATTCTCACTTTTAAGTAAAGCAGAAACCAATCAAGTAATCTTATATCATCATTTAAATCCATCTCTAATTTAATTCTTTGTGATGTCGCAGTGGAGGAATGACTCTAATGGTTATGGAGGTCATGGATATGGTGGCCATGGATATGGAAGTAATGGATATGCTGCTAGACAAAATCAGGATATAGCTATGCAACCCGCTGCTGCAGTTCAAGGGGCTTCCTAA

Protein sequence

>MS.gene26532.t1

MSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQQPPHQQQVSPPPTGHSHHGGHQQHQYQQHQQKQLAPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNDSNGYGGHGYGGHGYGSNGYAARQNQDIAMQPAAAVQGAS