AlfalfaGEDB | MS.gene42376

M. sativa cultivar XinJiangDaYe / MS.gene42376

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42376.t1	XP_003603699.1	87.5	337	41	1	1	336	1	337	5.40E-156	560.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42376.t1	Q9LSL1	65.2	207	61	4	141	336	145	351	2.7e-63	243.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42376.t1	G7J450	87.5	337	41	1	1	336	1	337	3.9e-156	560.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene42376.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050170	MS.gene42376	-0.834587	2.75E-56	-1.69E-46
MS.gene050496	MS.gene42376	-0.808057	3.73E-50	-1.69E-46
MS.gene050577	MS.gene42376	-0.800246	1.58E-48	-1.69E-46
MS.gene050864	MS.gene42376	0.823477	1.36E-53	-1.69E-46
MS.gene050904	MS.gene42376	-0.839683	1.37E-57	-1.69E-46
MS.gene052962	MS.gene42376	0.823162	1.61E-53	-1.69E-46
MS.gene053083	MS.gene42376	0.809802	1.58E-50	-1.69E-46
MS.gene053097	MS.gene42376	0.820527	6.54E-53	-1.69E-46
MS.gene05470	MS.gene42376	-0.810924	9.05E-51	-1.69E-46
MS.gene05589	MS.gene42376	-0.825138	5.52E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42376.t1	MTR_3g111290	94.955	337	16	1	1	336	1	337	0.0	636
MS.gene42376.t1	MTR_5g030770	49.275	345	146	11	1	336	1	325	4.65e-88	267
MS.gene42376.t1	MTR_5g030770	47.826	345	145	12	1	336	1	319	6.90e-81	249
MS.gene42376.t1	MTR_7g083900	46.316	190	76	4	170	333	284	473	4.47e-44	157
MS.gene42376.t1	MTR_7g083900	46.073	191	76	5	170	333	284	474	8.73e-43	154
MS.gene42376.t1	MTR_3g498695	45.078	193	82	3	165	333	291	483	1.06e-42	154
MS.gene42376.t1	MTR_3g498695	45.408	196	76	5	165	333	291	482	9.17e-42	151
MS.gene42376.t1	MTR_3g030700	41.711	187	90	5	161	328	185	371	2.06e-36	135
MS.gene42376.t1	MTR_7g076840	38.562	306	99	14	8	308	5	226	4.35e-34	125
MS.gene42376.t1	MTR_3g104100	36.410	195	100	6	161	331	184	378	2.38e-31	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42376.t1	AT5G65640	66.184	207	59	4	139	336	147	351	2.65e-79	246
MS.gene42376.t1	AT5G10570	64.286	182	57	3	159	336	138	315	8.15e-71	223
MS.gene42376.t1	AT1G12860	46.739	184	78	3	170	333	265	448	2.34e-43	155
MS.gene42376.t1	AT3G26744	45.026	191	75	5	170	333	305	492	1.87e-40	148
MS.gene42376.t1	AT3G26744	45.026	191	75	5	170	333	305	492	1.87e-40	148
MS.gene42376.t1	AT3G26744	45.026	191	75	5	170	333	305	492	1.87e-40	148
MS.gene42376.t1	AT1G12860	50.327	153	56	3	170	302	265	417	2.26e-38	141
MS.gene42376.t1	AT3G26744	48.125	160	53	5	170	302	305	461	3.55e-35	134
MS.gene42376.t1	AT5G65640	62.602	123	36	3	139	253	147	267	2.74e-31	119
MS.gene42376.t1	AT2G16910	35.484	155	64	4	171	289	313	467	5.69e-19	88.2

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Find 56 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACTTTCAATGAAATCTA+TGG	0.323772	3.1:-88948617	MS.gene42376:CDS
AACCGATCGAAGAAACTTCA+AGG	0.484937	3.1:-88948356	MS.gene42376:CDS
AAGCCTTATTCAGAAGTGCA+GGG	0.666202	3.1:-88947307	MS.gene42376:CDS
AAGTCTTCTTGAGAAATAAA+TGG	0.343736	3.1:+88948527	None:intergenic
AATGCAGGCTTCTTGCTCGG+AGG	0.698752	3.1:-88947746	MS.gene42376:intron
AATTGTCCCTAAGATAAGCA+AGG	0.652852	3.1:-88948258	MS.gene42376:intron
ACAGCCTTCGAAGAATCTAA+TGG	0.532414	3.1:-88948333	MS.gene42376:CDS
ACATAGATGGAGTTCTATGA+TGG	0.535755	3.1:-88948842	None:intergenic
ACTGTGGATAGCAACAACCC+TGG	0.706149	3.1:+88947835	None:intergenic
AGACTTTCCACTGTCCATGA+TGG	0.536479	3.1:-88948510	MS.gene42376:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTAATCAGAAATTCTCCAA+AGG	-	chr3.1:88948110-88948129	MS.gene42376:CDS	30.0%
TAACACATTGTTGAATCTCA+AGG	+	chr3.1:88948334-88948353	None:intergenic	30.0%
TGTTGAAGATTCATCAAGTA+AGG	+	chr3.1:88947533-88947552	None:intergenic	30.0%
TTTCAATGATTTCACAATGC+AGG	-	chr3.1:88948361-88948380	MS.gene42376:CDS	30.0%
AATTGTCCCTAAGATAAGCA+AGG	-	chr3.1:88947864-88947883	MS.gene42376:CDS	35.0%
CAAGAAGAGTTTGGAAGATA+TGG	+	chr3.1:88947439-88947458	None:intergenic	35.0%
CGACATTTAAAAAGTAACCG+AGG	+	chr3.1:88948423-88948442	None:intergenic	35.0%
GCTGCAAACAACATGTAAAA+TGG	-	chr3.1:88947681-88947700	MS.gene42376:intron	35.0%
TACCTACCTTGCTTATCTTA+GGG	+	chr3.1:88947873-88947892	None:intergenic	35.0%
TAGTATGAACCAAGAATCTG+TGG	+	chr3.1:88947556-88947575	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	88947286	88948858	88947286	ID=MS.gene42376
chr3.1	mRNA	88947286	88948858	88947286	ID=MS.gene42376.t1;Parent=MS.gene42376
chr3.1	exon	88948259	88948858	88948259	ID=MS.gene42376.t1.exon1;Parent=MS.gene42376.t1
chr3.1	CDS	88948259	88948858	88948259	ID=cds.MS.gene42376.t1;Parent=MS.gene42376.t1
chr3.1	exon	88948013	88948171	88948013	ID=MS.gene42376.t1.exon2;Parent=MS.gene42376.t1
chr3.1	CDS	88948013	88948171	88948013	ID=cds.MS.gene42376.t1;Parent=MS.gene42376.t1
chr3.1	exon	88947747	88947911	88947747	ID=MS.gene42376.t1.exon3;Parent=MS.gene42376.t1
chr3.1	CDS	88947747	88947911	88947747	ID=cds.MS.gene42376.t1;Parent=MS.gene42376.t1
chr3.1	exon	88947286	88947372	88947286	ID=MS.gene42376.t1.exon4;Parent=MS.gene42376.t1
chr3.1	CDS	88947286	88947372	88947286	ID=cds.MS.gene42376.t1;Parent=MS.gene42376.t1

Gene Sequence

>MS.gene42376

ATGGAGTTCTATGATGGAGATTTCATTGAGGAATTAATGGCTCTAAGAAGAGAAACATATGAAATTACCAATCCATGTCATGAAGAAAATCAATTCTTCTCATCAACAAGTAACTTGAGCTTTGATAACTGTTTTGATCAAAGCTCTTTACCATATCTTCCAAACTCTTCTTGTAGTCAACAAGTTCCTCAAAGCTATAACAACAATGATCACTACAGTAACACTTTCAATGAAATCTATGGTTCCTTACTTGATGAATCTTCAACACCACAGATTCTTGGTTCATACTATAATAATAGTATTGACACTCCATTTATTTCTCAAGAAGACTTTCCACTGTCCATGATGGGAGAAGAAGATCAAAGTTTGCTTGATGAAGAGCTTCAGAATTTGGAGCTGCAAACAACATGTAAAATGGAGCCAATACAATCACCTGAAATGCCAGTAGTTTTCAACACTGGTAAGGGTATGGAAAGAAAGAACCGATCGAAGAAACTTCAAGGACAGCCTTCGAAGAATCTAATGGCCGAAAGGAGAAGACGAAAGAGATTAAATGACCGTCTTTCAATGCTACGAGCAATTGTCCCTAAGATAAGCAAGGTAGGTACATATATGTATTTTATTTTATTTTATAGATGAATGTTAGTATATTAGTTGTTATACCGATCTAATAAATATTTGTGACAGATGGACAGAACAGCTATACTTGGAGATACTATTGATTACATGAAAGAGCTTTTAGAGAAAATCAACAATCTGCAACAAGAAATTGAACTAGATTCAAATATGACAAGCATTGTCAAAGATGTCAAACCAAGTGAAATCTTAATCAGAAATTCTCCAAAGGTACAAAATTTCACTGACCCTTTTGAAATTAATCTGTGTTGAAGGATCCAATTATTTTTATTTCTGTGTGTATTTTCTAAAAAAAAATTGTTACTTTGTAGTTTGAGGTAGAGAGGAGTGCAGGCACAAGGGTTGAAATTTGTTGTGCAGGGAAGCCAGGGTTGTTGCTATCCACAGTAAACACATTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCGGAGGTACATTAGTTACTTAATACTTCCTCGGTTACTTTTTAAATGTCGCAGTTGTAGTAAAAATGTGTTTTCATTTCTTCGTCGTTTTTAAAGTTCAATGTAACATTACCTAATATTTTGTTAGTGATACTTTTAATTATTTATTCTTGAGAGAAATAGATATATAAATTCATCAAAAGGAAAGAAATTTATTGATTTTTTTTTTCCATGTGTAAATGACTTTAATTCGACAGTTAAAAAGGAGCCGAGGGAGTAATATTAGAATTTTTTGGATACTTTATTTTATTGCTGATTTTTCATTCATCGTATGCCTAATAGTATATATTGTCTTTCTTAGTTAGGTAATCAAATTGTATTTCTTGTTTGTTATGCAACAGGAATTGGAGAAAAAGGCAATGCTAAGTTCTGAAGATATTAAGCAAGCCTTATTCAGAAGTGCAGGGTATGGTGGAAGATGTTTGTGA

Protein sequence

>MS.gene42376.t1

MEFYDGDFIEELMALRRETYEITNPCHEENQFFSSTSNLSFDNCFDQSSLPYLPNSSCSQQVPQSYNNNDHYSNTFNEIYGSLLDESSTPQILGSYYNNSIDTPFISQEDFPLSMMGEEDQSLLDEELQNLELQTTCKMEPIQSPEMPVVFNTGKGMERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSIVKDVKPSEILIRNSPKFEVERSAGTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEKKAMLSSEDIKQALFRSAGYGGRCL