Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053297.t1 | RHN77464.1 | 95.5 | 642 | 28 | 1 | 1 | 641 | 1 | 642 | 0.00E+00 | 1203.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053297.t1 | Q8RXN5 | 71.0 | 637 | 175 | 4 | 4 | 633 | 5 | 638 | 1.9e-267 | 922.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053297.t1 | A0A396JJV0 | 95.5 | 642 | 28 | 1 | 1 | 641 | 1 | 642 | 0.0e+00 | 1203.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053297 | MS.gene26959 | 0.805823 | 1.11E-49 | -1.69E-46 |
| MS.gene053297 | MS.gene27317 | 0.83463 | 2.68E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053297 | MS.gene09026 | PPI |
| MS.gene053297 | MS.gene64879 | PPI |
| MS.gene053297 | MS.gene023432 | PPI |
| MS.gene053297 | MS.gene72649 | PPI |
| MS.gene053297 | MS.gene09221 | PPI |
| MS.gene053297 | MS.gene049876 | PPI |
| MS.gene053297 | MS.gene08538 | PPI |
| MS.gene053297 | MS.gene08537 | PPI |
| MS.gene053297 | MS.gene023429 | PPI |
| MS.gene053297 | MS.gene65363 | PPI |
| MS.gene023431 | MS.gene053297 | PPI |
| MS.gene053297 | MS.gene023427 | PPI |
| MS.gene053297 | MS.gene65323 | PPI |
| MS.gene023430 | MS.gene053297 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053297.t1 | MTR_1g022235 | 96.306 | 379 | 13 | 1 | 1 | 378 | 1 | 379 | 0.0 | 763 |
| MS.gene053297.t1 | MTR_1g022225 | 99.219 | 256 | 2 | 0 | 386 | 641 | 1 | 256 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053297.t1 | AT1G75200 | 72.100 | 638 | 166 | 5 | 4 | 633 | 5 | 638 | 0.0 | 948 |
Find 181 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGGTTAGGGTTGGGGTTT+TGG | 0.092746 | 1.4:-2144595 | None:intergenic |
| TCCTGTTATTAGAGCAAATT+TGG | 0.158620 | 1.4:+2145279 | MS.gene053297:CDS |
| GACCACTCTTTGGAGATTTC+TGG | 0.166707 | 1.4:+2150740 | MS.gene053297:CDS |
| GCAGAATTTACGATCTCTAT+TGG | 0.246263 | 1.4:-2146603 | None:intergenic |
| ATTTAAATTCAGGTGGCTTC+TGG | 0.249615 | 1.4:+2151575 | MS.gene053297:intron |
| TTGCAGGGTTATAAGATTAT+TGG | 0.257743 | 1.4:+2145838 | MS.gene053297:intron |
| TTTATCTCTGGATACATAAT+AGG | 0.262090 | 1.4:-2150484 | None:intergenic |
| ACCAAATTTGCTCTAATAAC+AGG | 0.278071 | 1.4:-2145280 | None:intergenic |
| CGTTTCCTTGGGGAGATCTT+CGG | 0.282190 | 1.4:-2144732 | None:intergenic |
| ACACCATCCTGGGCCGTCTA+TGG | 0.292318 | 1.4:+2151632 | MS.gene053297:CDS |
| AACCTCAAAACCTGGGTAAT+AGG | 0.319156 | 1.4:-2150595 | None:intergenic |
| GTTTCCTTGGGGAGATCTTC+GGG | 0.325569 | 1.4:-2144731 | None:intergenic |
| AAGTGTAGATTTGCGGTATT+CGG | 0.326741 | 1.4:+2144875 | MS.gene053297:CDS |
| TTTACGGAATTGAGAGTCAT+AGG | 0.364405 | 1.4:+2145938 | MS.gene053297:CDS |
| CTTCCTCGAAGGTGCTTTAC+CGG | 0.369795 | 1.4:-2145197 | None:intergenic |
| CCCTTGATTTCAATGAAGTC+GGG | 0.372694 | 1.4:-2151158 | None:intergenic |
| ACCACTCTTTGGAGATTTCT+GGG | 0.373617 | 1.4:+2150741 | MS.gene053297:CDS |
| CTTAAGAGAGTCCTTTGTTC+CGG | 0.374790 | 1.4:-2150707 | None:intergenic |
| ACTAAGAAGTTCAAAATTGA+TGG | 0.376599 | 1.4:+2151439 | MS.gene053297:CDS |
| TGTTGATGATGGTGGTGATT+TGG | 0.380928 | 1.4:+2145075 | MS.gene053297:CDS |
| TCCTTATCGTTGCTTCCACT+TGG | 0.382287 | 1.4:+2144759 | MS.gene053297:CDS |
| AAGTCGAGCCGCAAAGAATC+AGG | 0.393504 | 1.4:+2151713 | MS.gene053297:CDS |
| GCGAGGAGTGTGAGACGAGC+TGG | 0.394107 | 1.4:-2144494 | None:intergenic |
| ATCCAGGACAGTTGAGATAT+AGG | 0.397266 | 1.4:+2151675 | MS.gene053297:CDS |
| GAGGCGGTTAGAGAGGGTTT+TGG | 0.398722 | 1.4:-2144648 | None:intergenic |
| TATTATAAACTCTTCAGTAT+TGG | 0.406516 | 1.4:+2151131 | MS.gene053297:CDS |
| GTTGATCTTGAAGATATTGC+CGG | 0.412171 | 1.4:+2145178 | MS.gene053297:CDS |
| ACTTCTAACCTGATTCTTTG+CGG | 0.414058 | 1.4:-2151721 | None:intergenic |
| GATAAGGAGAAGCGTTTCCT+TGG | 0.416520 | 1.4:-2144744 | None:intergenic |
| TTGTGGATGAGTTGCACAAA+AGG | 0.421585 | 1.4:+2150512 | MS.gene053297:CDS |
| TAGAGCAAATTTGGTGAAGC+AGG | 0.424165 | 1.4:+2145288 | MS.gene053297:CDS |
| TGCATTTGTAACTAGAAAAG+TGG | 0.426329 | 1.4:-2150542 | None:intergenic |
| CTATGATAAATTTCATGATC+TGG | 0.430965 | 1.4:+2151483 | MS.gene053297:CDS |
| GCAATCGATAGACCACTCTT+TGG | 0.431413 | 1.4:+2150730 | MS.gene053297:CDS |
| GTTGCTGAAGCCTATTACCC+AGG | 0.436691 | 1.4:+2150585 | MS.gene053297:CDS |
| GTTTAATCATATTTGTATGC+TGG | 0.437012 | 1.4:-2146632 | None:intergenic |
| CATTGTGCATTATCTCTTGT+TGG | 0.437204 | 1.4:+2150457 | MS.gene053297:CDS |
| ACATGGCTGCCACACCATCC+TGG | 0.438997 | 1.4:+2151621 | MS.gene053297:CDS |
| CGATTGGCTTGCGGAGAGTT+CGG | 0.440051 | 1.4:+2144820 | MS.gene053297:CDS |
| ATAAGGAGAAGCGTTTCCTT+GGG | 0.442770 | 1.4:-2144743 | None:intergenic |
| GGATTTGTAGAAGAAGTAGA+AGG | 0.443145 | 1.4:-2144534 | None:intergenic |
| TCCACAAGTGTATTTATCTC+TGG | 0.443802 | 1.4:-2150496 | None:intergenic |
| CGGAACAAAGGACTCTCTTA+AGG | 0.444253 | 1.4:+2150708 | MS.gene053297:CDS |
| AGTATAAATTCTTCGCCGAT+TGG | 0.444572 | 1.4:+2144804 | MS.gene053297:CDS |
| AAACAAATGAAAGGAGTTCC+TGG | 0.444665 | 1.4:+2146651 | MS.gene053297:CDS |
| CAAATCCAGTAGCGAAAAGT+TGG | 0.447385 | 1.4:+2146562 | MS.gene053297:CDS |
| TTCCTATATCTCAACTGTCC+TGG | 0.455066 | 1.4:-2151677 | None:intergenic |
| TTATTTGCACATGCCAAGCT+AGG | 0.467055 | 1.4:-2146513 | None:intergenic |
| GAGAGTAATGGGAAGTTGAA+TGG | 0.471230 | 1.4:+2145238 | MS.gene053297:CDS |
| TCCATCCTTTCACAAGGGTC+AGG | 0.473152 | 1.4:-2151088 | None:intergenic |
| TGCCGACGTGAAAGCTTTCT+CGG | 0.477548 | 1.4:+2151336 | MS.gene053297:CDS |
| CTACGGTGAAGGAGAGTAAT+GGG | 0.482227 | 1.4:+2145227 | MS.gene053297:CDS |
| AAGTGGTGTGGGAAGGTTGT+TGG | 0.484900 | 1.4:+2145040 | MS.gene053297:CDS |
| ACCCGACTTCATTGAAATCA+AGG | 0.485531 | 1.4:+2151157 | MS.gene053297:CDS |
| TGATGGTGGTGAGGTGGATG+AGG | 0.488135 | 1.4:+2145009 | MS.gene053297:CDS |
| GCGGTATTCGGTGTCGGCAG+TGG | 0.490796 | 1.4:+2144887 | MS.gene053297:CDS |
| CATGGAGGCAACCCCTAGCT+TGG | 0.491145 | 1.4:+2146500 | MS.gene053297:CDS |
| GTAGAAGAAGTAGAAGGTTG+TGG | 0.494820 | 1.4:-2144528 | None:intergenic |
| GGTGAGAATTTCAATGCGGT+TGG | 0.495729 | 1.4:+2144917 | MS.gene053297:CDS |
| ATCAAGGGTGTTACATATTG+TGG | 0.497705 | 1.4:+2151173 | MS.gene053297:CDS |
| ACCCTTGATTTCAATGAAGT+CGG | 0.497934 | 1.4:-2151159 | None:intergenic |
| CATGGCTGCCACACCATCCT+GGG | 0.498661 | 1.4:+2151622 | MS.gene053297:CDS |
| GGTGTCGGCAGTGGAGGTTA+TGG | 0.500301 | 1.4:+2144896 | MS.gene053297:CDS |
| TTCGAGGAAGCTGGTGGCTA+CGG | 0.500414 | 1.4:+2145210 | MS.gene053297:CDS |
| AGAGTCTGATGAGGAGGAAG+AGG | 0.501593 | 1.4:+2145141 | MS.gene053297:CDS |
| CAGCATTCCATCCTTTCACA+AGG | 0.501696 | 1.4:-2151094 | None:intergenic |
| GTTGAATGGAAAGAAAGAAA+TGG | 0.505644 | 1.4:+2145252 | MS.gene053297:CDS |
| GAAAAGTTGGGTGTGGGAGA+TGG | 0.507932 | 1.4:+2146575 | MS.gene053297:CDS |
| CCCAAGTGGAAGCAACGATA+AGG | 0.508085 | 1.4:-2144760 | None:intergenic |
| GAATTTCAATGCGGTTGGTA+AGG | 0.508915 | 1.4:+2144922 | MS.gene053297:CDS |
| TATTTGCACATGCCAAGCTA+GGG | 0.514611 | 1.4:-2146512 | None:intergenic |
| TCACTCGTGTTGTGTCCTCT+TGG | 0.516638 | 1.4:+2151411 | MS.gene053297:CDS |
| GGATTCCTTGACTGCTCTGA+AGG | 0.516788 | 1.4:+2151040 | MS.gene053297:intron |
| TGAGGAGGAAGAGGCGGAGT+CGG | 0.518460 | 1.4:+2145150 | MS.gene053297:CDS |
| GGTAACGAGATGATTCCGTT+GGG | 0.519802 | 1.4:+2144974 | MS.gene053297:CDS |
| TTTGTCGAAGTGTAGATTTG+CGG | 0.520004 | 1.4:+2144868 | MS.gene053297:CDS |
| GAGGAAGGTGGATTTGATCC+AGG | 0.523501 | 1.4:+2151659 | MS.gene053297:CDS |
| AGGTGAGGAAACGGTGGAGG+CGG | 0.524499 | 1.4:-2144664 | None:intergenic |
| CAGTAGCGAAAAGTTGGGTG+TGG | 0.532702 | 1.4:+2146568 | MS.gene053297:CDS |
| CGAGCTGGGACTGATGAGAA+TGG | 0.534353 | 1.4:-2144479 | None:intergenic |
| TAAAGCACCTTCGAGGAAGC+TGG | 0.534689 | 1.4:+2145201 | MS.gene053297:CDS |
| CTCAGCTCCATAGACGGCCC+AGG | 0.535554 | 1.4:-2151639 | None:intergenic |
| GGTTGTTTGAGGTGAGGAAA+CGG | 0.535614 | 1.4:-2144673 | None:intergenic |
| GTCGAATGCAAGGTTGTTTG+AGG | 0.536695 | 1.4:-2144684 | None:intergenic |
| AAGTCACAGCTTCGAGGTCG+AGG | 0.539284 | 1.4:+2145895 | MS.gene053297:CDS |
| CGAGGAGTGTGAGACGAGCT+GGG | 0.539403 | 1.4:-2144493 | None:intergenic |
| TTGATGGCCAGTGGTATACA+TGG | 0.541192 | 1.4:+2151455 | MS.gene053297:CDS |
| GTTGCTTCCACTTGGGAAGA+CGG | 0.542672 | 1.4:+2144767 | MS.gene053297:CDS |
| TTGAGGTGAGGAAACGGTGG+AGG | 0.544628 | 1.4:-2144667 | None:intergenic |
| ATTCTTCGCCGATTGGCTTG+CGG | 0.545441 | 1.4:+2144811 | MS.gene053297:CDS |
| CTCTGTCTCTGAAAAGCCAA+GGG | 0.546175 | 1.4:+2151362 | MS.gene053297:CDS |
| AGGAGATGTTGATGGTGGTG+AGG | 0.548049 | 1.4:+2145000 | MS.gene053297:CDS |
| TGTTGGTTTGAGAAATGAAG+AGG | 0.549143 | 1.4:-2144622 | None:intergenic |
| GCTTTCACGTCGGCATGCCA+AGG | 0.550330 | 1.4:-2151328 | None:intergenic |
| GAAGCTGGTGGCTACGGTGA+AGG | 0.550823 | 1.4:+2145216 | MS.gene053297:CDS |
| GTGAAACGGATGAAGGCGTT+GGG | 0.552770 | 1.4:+2144950 | MS.gene053297:CDS |
| GCCTGACCCTTGTGAAAGGA+TGG | 0.553096 | 1.4:+2151087 | MS.gene053297:CDS |
| TGAAGAAGAGTCTGATGAGG+AGG | 0.553756 | 1.4:+2145135 | MS.gene053297:CDS |
| CGAACTCTCCGCAAGCCAAT+CGG | 0.555358 | 1.4:-2144819 | None:intergenic |
| TGGACTAAGTCACAGCTTCG+AGG | 0.559406 | 1.4:+2145889 | MS.gene053297:CDS |
| AGGCAACTTCATACTCCCCT+TGG | 0.560657 | 1.4:-2151378 | None:intergenic |
| AACGGTGGAGGCGGTTAGAG+AGG | 0.565434 | 1.4:-2144655 | None:intergenic |
| CCTTATCGTTGCTTCCACTT+GGG | 0.567188 | 1.4:+2144760 | MS.gene053297:CDS |
| GTCTGATGAGGAGGAAGAGG+CGG | 0.567189 | 1.4:+2145144 | MS.gene053297:CDS |
| TGCTACATCAAAATTAACAA+TGG | 0.568819 | 1.4:+2151297 | MS.gene053297:CDS |
| GGAGATTGTGAAACGGATGA+AGG | 0.571123 | 1.4:+2144943 | MS.gene053297:CDS |
| TAACAATGGAAAATGTCCCT+TGG | 0.571608 | 1.4:+2151311 | MS.gene053297:CDS |
| AGTCTATCCATGTATACCAC+TGG | 0.572314 | 1.4:-2151462 | None:intergenic |
| GCTCTGTCTCTGAAAAGCCA+AGG | 0.575623 | 1.4:+2151361 | MS.gene053297:CDS |
| TCCAGAGATAAATACACTTG+TGG | 0.576447 | 1.4:+2150495 | MS.gene053297:CDS |
| TCAGGCGGTATACAGTGCGC+TGG | 0.577014 | 1.4:-2151070 | None:intergenic |
| ACGGTGGAGGCGGTTAGAGA+GGG | 0.577423 | 1.4:-2144654 | None:intergenic |
| AGATTTGCGGTATTCGGTGT+CGG | 0.577679 | 1.4:+2144881 | MS.gene053297:CDS |
| GCTACGGTGAAGGAGAGTAA+TGG | 0.579239 | 1.4:+2145226 | MS.gene053297:CDS |
| TGGTAACGAGATGATTCCGT+TGG | 0.580232 | 1.4:+2144973 | MS.gene053297:CDS |
| GTATTCGGTGTCGGCAGTGG+AGG | 0.580600 | 1.4:+2144890 | MS.gene053297:CDS |
| AGATGTTGATGGTGGTGAGG+TGG | 0.580983 | 1.4:+2145003 | MS.gene053297:CDS |
| GCCGTCTATGGAGCTGAGGA+AGG | 0.583318 | 1.4:+2151644 | MS.gene053297:CDS |
| TGGATGAGTTGCACAAAAGG+AGG | 0.584833 | 1.4:+2150515 | MS.gene053297:CDS |
| AAATCCAGTAGCGAAAAGTT+GGG | 0.586529 | 1.4:+2146563 | MS.gene053297:CDS |
| TTGCCGGTAAAGCACCTTCG+AGG | 0.590223 | 1.4:+2145194 | MS.gene053297:CDS |
| AAGAATTTATACTCCGGCGG+TGG | 0.594684 | 1.4:-2144794 | None:intergenic |
| CAGTGTAGATGCCGGAACAA+AGG | 0.595194 | 1.4:+2150696 | MS.gene053297:CDS |
| AATATGATTAAACAAATGAA+AGG | 0.595549 | 1.4:+2146642 | MS.gene053297:CDS |
| GTGGTGTCAAGATTTGTAGA+TGG | 0.595777 | 1.4:+2145869 | MS.gene053297:CDS |
| GAAGAAGTAGAAGGTTGTGG+CGG | 0.596045 | 1.4:-2144525 | None:intergenic |
| TGATGAAGAAGAGTCTGATG+AGG | 0.598927 | 1.4:+2145132 | MS.gene053297:CDS |
| TGTGAAACGGATGAAGGCGT+TGG | 0.600791 | 1.4:+2144949 | MS.gene053297:CDS |
| ACACGAGTGAACATGCTCAC+AGG | 0.600820 | 1.4:-2151398 | None:intergenic |
| ATCCTTTCACAAGGGTCAGG+CGG | 0.604119 | 1.4:-2151085 | None:intergenic |
| GTCTATGGAGCTGAGGAAGG+TGG | 0.604936 | 1.4:+2151647 | MS.gene053297:CDS |
| ATGCAAGGTTGTTTGAGGTG+AGG | 0.606431 | 1.4:-2144679 | None:intergenic |
| CTTTCACGTCGGCATGCCAA+GGG | 0.607070 | 1.4:-2151327 | None:intergenic |
| TTATATGTCAGTGTAGATGC+CGG | 0.607545 | 1.4:+2150688 | MS.gene053297:CDS |
| TGTTTGAGGTGAGGAAACGG+TGG | 0.612358 | 1.4:-2144670 | None:intergenic |
| CCCGACTTCATTGAAATCAA+GGG | 0.615860 | 1.4:+2151158 | MS.gene053297:CDS |
| ACCTCGGAGCGATTAACTGA+AGG | 0.618092 | 1.4:+2150421 | MS.gene053297:CDS |
| CTTGCATTCGACATCATCGA+TGG | 0.618944 | 1.4:+2144695 | MS.gene053297:CDS |
| GCTCCATAGACGGCCCAGGA+TGG | 0.619796 | 1.4:-2151635 | None:intergenic |
| TCCCAGAAATCTCCAAAGAG+TGG | 0.620464 | 1.4:-2150742 | None:intergenic |
| GGGGAAGGAGATGTTGATGG+TGG | 0.624176 | 1.4:+2144995 | MS.gene053297:CDS |
| ATACTGAAAGGTGTTGATGA+TGG | 0.624454 | 1.4:+2145064 | MS.gene053297:CDS |
| AGTAGCGAAAAGTTGGGTGT+GGG | 0.624662 | 1.4:+2146569 | MS.gene053297:CDS |
| CTGGGCCGTCTATGGAGCTG+AGG | 0.625153 | 1.4:+2151640 | MS.gene053297:CDS |
| TAACGAGATGATTCCGTTGG+GGG | 0.625747 | 1.4:+2144976 | MS.gene053297:CDS |
| TTGTGGCGGAGAAGAGAGCG+AGG | 0.627299 | 1.4:-2144511 | None:intergenic |
| GTAGCCACCAGCTTCCTCGA+AGG | 0.629332 | 1.4:-2145208 | None:intergenic |
| AAGATTATTGGTTCACACAG+TGG | 0.629945 | 1.4:+2145850 | MS.gene053297:CDS |
| ACCTTCCTCAGCTCCATAGA+CGG | 0.630071 | 1.4:-2151645 | None:intergenic |
| TTGGTAAGGAGATTGTGAAA+CGG | 0.632862 | 1.4:+2144936 | MS.gene053297:CDS |
| ATAGACGGCCCAGGATGGTG+TGG | 0.635119 | 1.4:-2151630 | None:intergenic |
| TTGGCTTGCGGAGAGTTCGG+AGG | 0.639532 | 1.4:+2144823 | MS.gene053297:CDS |
| TACCGCCTGACCCTTGTGAA+AGG | 0.639713 | 1.4:+2151083 | MS.gene053297:CDS |
| ATTTGCACATGCCAAGCTAG+GGG | 0.639964 | 1.4:-2146511 | None:intergenic |
| AGTTCAAAATTGATGGCCAG+TGG | 0.640034 | 1.4:+2151446 | MS.gene053297:CDS |
| CTGAAAGGTGTTGATGATGG+TGG | 0.640774 | 1.4:+2145067 | MS.gene053297:CDS |
| TGATTTGGAGAATGCTGAGG+AGG | 0.642559 | 1.4:+2145090 | MS.gene053297:CDS |
| TTATGAGTGAAATAGGTGCA+TGG | 0.642687 | 1.4:+2146482 | MS.gene053297:intron |
| TAAGGAGAAGCGTTTCCTTG+GGG | 0.648137 | 1.4:-2144742 | None:intergenic |
| AGAGATAATGCACAATGCCG+TGG | 0.654133 | 1.4:-2150451 | None:intergenic |
| GTAACGAGATGATTCCGTTG+GGG | 0.654757 | 1.4:+2144975 | MS.gene053297:CDS |
| AGCATTCCATCCTTTCACAA+GGG | 0.657631 | 1.4:-2151093 | None:intergenic |
| GGAAGACGGAAAACCACCGC+CGG | 0.657646 | 1.4:+2144781 | MS.gene053297:CDS |
| GAGAATGCTGAGGAGGAAAG+CGG | 0.660819 | 1.4:+2145097 | MS.gene053297:CDS |
| TCACAGCTTCGAGGTCGAGG+TGG | 0.662705 | 1.4:+2145898 | MS.gene053297:CDS |
| CATCGATGATGTCGAATGCA+AGG | 0.667846 | 1.4:-2144694 | None:intergenic |
| AGCACCTTCGAGGAAGCTGG+TGG | 0.676170 | 1.4:+2145204 | MS.gene053297:CDS |
| CTCCGAGAAAGCTTTCACGT+CGG | 0.679985 | 1.4:-2151338 | None:intergenic |
| AAGGTTGTTGGAATACTGAA+AGG | 0.681691 | 1.4:+2145052 | MS.gene053297:CDS |
| TCGGCGAAGAATTTATACTC+CGG | 0.685809 | 1.4:-2144800 | None:intergenic |
| GCGAAGAATTTATACTCCGG+CGG | 0.686331 | 1.4:-2144797 | None:intergenic |
| TAACTGAAGGCATGACACCA+CGG | 0.686690 | 1.4:+2150434 | MS.gene053297:CDS |
| AAACGGATGAAGGCGTTGGG+TGG | 0.695210 | 1.4:+2144953 | MS.gene053297:CDS |
| TGGGACTGATGAGAATGGCA+TGG | 0.701260 | 1.4:-2144474 | None:intergenic |
| TGGTGATTTGGAGAATGCTG+AGG | 0.702453 | 1.4:+2145087 | MS.gene053297:CDS |
| GCCTTCAGTTAATCGCTCCG+AGG | 0.710873 | 1.4:-2150422 | None:intergenic |
| CGAACCCGAAGATCTCCCCA+AGG | 0.723663 | 1.4:+2144727 | MS.gene053297:CDS |
| CGACGTGAAAGCTTTCTCGG+AGG | 0.740056 | 1.4:+2151339 | MS.gene053297:CDS |
| TCTGTCTCTGAAAAGCCAAG+GGG | 0.741241 | 1.4:+2151363 | MS.gene053297:CDS |
| TGAGTGAAATAGGTGCATGG+AGG | 0.759000 | 1.4:+2146485 | MS.gene053297:intron |
| TTATGGTGAGAATTTCAATG+CGG | 0.771681 | 1.4:+2144913 | MS.gene053297:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2144476 | 2151739 | 2144476 | ID=MS.gene053297 |
| chr1.4 | mRNA | 2144476 | 2151739 | 2144476 | ID=MS.gene053297.t1;Parent=MS.gene053297 |
| chr1.4 | exon | 2144476 | 2145309 | 2144476 | ID=MS.gene053297.t1.exon1;Parent=MS.gene053297.t1 |
| chr1.4 | CDS | 2144476 | 2145309 | 2144476 | ID=cds.MS.gene053297.t1;Parent=MS.gene053297.t1 |
| chr1.4 | exon | 2145844 | 2145959 | 2145844 | ID=MS.gene053297.t1.exon2;Parent=MS.gene053297.t1 |
| chr1.4 | CDS | 2145844 | 2145959 | 2145844 | ID=cds.MS.gene053297.t1;Parent=MS.gene053297.t1 |
| chr1.4 | exon | 2146497 | 2146672 | 2146497 | ID=MS.gene053297.t1.exon3;Parent=MS.gene053297.t1 |
| chr1.4 | CDS | 2146497 | 2146672 | 2146497 | ID=cds.MS.gene053297.t1;Parent=MS.gene053297.t1 |
| chr1.4 | exon | 2150416 | 2150606 | 2150416 | ID=MS.gene053297.t1.exon4;Parent=MS.gene053297.t1 |
| chr1.4 | CDS | 2150416 | 2150606 | 2150416 | ID=cds.MS.gene053297.t1;Parent=MS.gene053297.t1 |
| chr1.4 | exon | 2150688 | 2150774 | 2150688 | ID=MS.gene053297.t1.exon5;Parent=MS.gene053297.t1 |
| chr1.4 | CDS | 2150688 | 2150774 | 2150688 | ID=cds.MS.gene053297.t1;Parent=MS.gene053297.t1 |
| chr1.4 | exon | 2151041 | 2151198 | 2151041 | ID=MS.gene053297.t1.exon6;Parent=MS.gene053297.t1 |
| chr1.4 | CDS | 2151041 | 2151198 | 2151041 | ID=cds.MS.gene053297.t1;Parent=MS.gene053297.t1 |
| chr1.4 | exon | 2151294 | 2151504 | 2151294 | ID=MS.gene053297.t1.exon7;Parent=MS.gene053297.t1 |
| chr1.4 | CDS | 2151294 | 2151504 | 2151294 | ID=cds.MS.gene053297.t1;Parent=MS.gene053297.t1 |
| chr1.4 | exon | 2151587 | 2151739 | 2151587 | ID=MS.gene053297.t1.exon8;Parent=MS.gene053297.t1 |
| chr1.4 | CDS | 2151587 | 2151739 | 2151587 | ID=cds.MS.gene053297.t1;Parent=MS.gene053297.t1 |
| Gene Sequence |
| Protein sequence |
