Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26959.t1 | RHN77464.1 | 95.5 | 642 | 28 | 1 | 1 | 641 | 1 | 642 | 0.00E+00 | 1205.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26959.t1 | Q8RXN5 | 70.8 | 637 | 176 | 4 | 4 | 633 | 5 | 638 | 1.1e-267 | 923.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26959.t1 | A0A396JJV0 | 95.5 | 642 | 28 | 1 | 1 | 641 | 1 | 642 | 0.0e+00 | 1205.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053297 | MS.gene26959 | 0.805823 | 1.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26959 | MS.gene023432 | PPI |
| MS.gene023431 | MS.gene26959 | PPI |
| MS.gene26959 | MS.gene09026 | PPI |
| MS.gene26959 | MS.gene64879 | PPI |
| MS.gene26959 | MS.gene72649 | PPI |
| MS.gene26959 | MS.gene09221 | PPI |
| MS.gene26959 | MS.gene65363 | PPI |
| MS.gene26959 | MS.gene049876 | PPI |
| MS.gene26959 | MS.gene08538 | PPI |
| MS.gene26959 | MS.gene08537 | PPI |
| MS.gene26959 | MS.gene023429 | PPI |
| MS.gene023430 | MS.gene26959 | PPI |
| MS.gene26959 | MS.gene65323 | PPI |
| MS.gene26959 | MS.gene023427 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26959.t1 | MTR_1g022235 | 96.570 | 379 | 12 | 1 | 1 | 378 | 1 | 379 | 0.0 | 764 |
| MS.gene26959.t1 | MTR_1g022225 | 98.828 | 256 | 3 | 0 | 386 | 641 | 1 | 256 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26959.t1 | AT1G75200 | 71.944 | 638 | 167 | 5 | 4 | 633 | 5 | 638 | 0.0 | 947 |
Find 180 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGGTTAGGGTTGGGGTTT+TGG | 0.092746 | 1.3:-2831498 | None:intergenic |
| TCCTGTTATTAGAGCAAATT+TGG | 0.158620 | 1.3:+2832182 | MS.gene26959:CDS |
| GACCACTCTTTGGAGATTTC+TGG | 0.166707 | 1.3:+2837677 | MS.gene26959:CDS |
| GCAGAATTTACGATCTCTAT+TGG | 0.246263 | 1.3:-2833506 | None:intergenic |
| ATTTAAATTCAGGTGGCTTC+TGG | 0.249615 | 1.3:+2838512 | MS.gene26959:intron |
| TTGCAGGGTTATAAGATTAT+TGG | 0.257743 | 1.3:+2832741 | MS.gene26959:intron |
| TTTATCTCTGGATACATAAT+AGG | 0.262090 | 1.3:-2837421 | None:intergenic |
| ACCAAATTTGCTCTAATAAC+AGG | 0.278071 | 1.3:-2832183 | None:intergenic |
| CGTTTCCTTGGGGAGATCTT+CGG | 0.282190 | 1.3:-2831635 | None:intergenic |
| AACCTCAAAACCTGGGTAAT+AGG | 0.319156 | 1.3:-2837532 | None:intergenic |
| GTTTCCTTGGGGAGATCTTC+GGG | 0.325569 | 1.3:-2831634 | None:intergenic |
| AAGTGTAGATTTGCGGTATT+CGG | 0.326741 | 1.3:+2831778 | MS.gene26959:CDS |
| ACACCAACCTGGGCCGTCTA+TGG | 0.332010 | 1.3:+2838569 | MS.gene26959:CDS |
| TTTACGGAATTGAGAGTCAT+AGG | 0.364405 | 1.3:+2832841 | MS.gene26959:CDS |
| CTTCCTCGAAGGTGCTTTAC+CGG | 0.369795 | 1.3:-2832100 | None:intergenic |
| CCCTTGATTTCAATGAAGTC+GGG | 0.372694 | 1.3:-2838095 | None:intergenic |
| ACCACTCTTTGGAGATTTCT+GGG | 0.373617 | 1.3:+2837678 | MS.gene26959:CDS |
| CTTAAGAGAGTCCTTTGTTC+CGG | 0.374790 | 1.3:-2837644 | None:intergenic |
| ACTAAGAAGTTCAAAATTGA+TGG | 0.376599 | 1.3:+2838376 | MS.gene26959:CDS |
| TGTTGATGATGGTGGTGATT+TGG | 0.380928 | 1.3:+2831978 | MS.gene26959:CDS |
| TCCTTATCGTTGCTTCCACT+TGG | 0.382287 | 1.3:+2831662 | MS.gene26959:CDS |
| AAGTCGAGCCGCAAAGAATC+AGG | 0.393504 | 1.3:+2838650 | MS.gene26959:CDS |
| ATCCAGGACAGTTGAGATAT+AGG | 0.397266 | 1.3:+2838612 | MS.gene26959:CDS |
| GAGGCGGTTAGAGAGGGTTT+TGG | 0.398722 | 1.3:-2831551 | None:intergenic |
| TATTATAAACTCTTCAGTAT+TGG | 0.406516 | 1.3:+2838068 | MS.gene26959:CDS |
| ACTTCTAACCTGATTCTTTG+CGG | 0.411619 | 1.3:-2838658 | None:intergenic |
| GTTGATCTTGAAGATATTGC+CGG | 0.412171 | 1.3:+2832081 | MS.gene26959:CDS |
| GATAAGGAGAAGCGTTTCCT+TGG | 0.416520 | 1.3:-2831647 | None:intergenic |
| TTGTGGATGAGTTGCACAAA+AGG | 0.421585 | 1.3:+2837449 | MS.gene26959:CDS |
| TAGAGCAAATTTGGTGAAGC+AGG | 0.424165 | 1.3:+2832191 | MS.gene26959:CDS |
| GCGGTATTCGGTGTCGGTAG+TGG | 0.425958 | 1.3:+2831790 | MS.gene26959:CDS |
| TGCATTTGTAACTAGAAAAG+TGG | 0.426329 | 1.3:-2837479 | None:intergenic |
| CTATGATAAATTTCATGATC+TGG | 0.430965 | 1.3:+2838420 | MS.gene26959:CDS |
| GCAATCGATAGACCACTCTT+TGG | 0.431413 | 1.3:+2837667 | MS.gene26959:CDS |
| GTTGCTGAAGCCTATTACCC+AGG | 0.436691 | 1.3:+2837522 | MS.gene26959:CDS |
| GTTTAATCATATTTGTATGC+TGG | 0.437012 | 1.3:-2833535 | None:intergenic |
| CATTGTGCATTATCTCTTGT+TGG | 0.437204 | 1.3:+2837394 | MS.gene26959:CDS |
| CGATTGGCTTGCGGAGAGTT+CGG | 0.440051 | 1.3:+2831723 | MS.gene26959:CDS |
| ATAAGGAGAAGCGTTTCCTT+GGG | 0.442770 | 1.3:-2831646 | None:intergenic |
| GGATTTGTAGAAGAAGTAGA+AGG | 0.443145 | 1.3:-2831437 | None:intergenic |
| TCCACAAGTGTATTTATCTC+TGG | 0.443802 | 1.3:-2837433 | None:intergenic |
| CGGAACAAAGGACTCTCTTA+AGG | 0.444253 | 1.3:+2837645 | MS.gene26959:CDS |
| AGTATAAATTCTTCGCCGAT+TGG | 0.444572 | 1.3:+2831707 | MS.gene26959:CDS |
| AAACAAATGAAAGGAGTTCC+TGG | 0.444665 | 1.3:+2833554 | MS.gene26959:CDS |
| CAAATCCAGTAGCGAAAAGT+TGG | 0.447385 | 1.3:+2833465 | MS.gene26959:CDS |
| TTCCTATATCTCAACTGTCC+TGG | 0.455066 | 1.3:-2838614 | None:intergenic |
| TTATTTGCACATGCCAAGCT+AGG | 0.467055 | 1.3:-2833416 | None:intergenic |
| GAGAGTAATGGGAAGTTGAA+TGG | 0.471230 | 1.3:+2832141 | MS.gene26959:CDS |
| TCCATCCTTTCACAAGGGTC+AGG | 0.473152 | 1.3:-2838025 | None:intergenic |
| TGCCGACGTGAAAGCTTTCT+CGG | 0.477548 | 1.3:+2838273 | MS.gene26959:CDS |
| GCGAGGAGTGTGAGACGAGC+TGG | 0.480350 | 1.3:-2831397 | None:intergenic |
| ACATGGCTGCCACACCAACC+TGG | 0.481108 | 1.3:+2838558 | MS.gene26959:CDS |
| CTACGGTGAAGGAGAGTAAT+GGG | 0.482227 | 1.3:+2832130 | MS.gene26959:CDS |
| AAGTGGTGTGGGAAGGTTGT+TGG | 0.484900 | 1.3:+2831943 | MS.gene26959:CDS |
| ACCCGACTTCATTGAAATCA+AGG | 0.485531 | 1.3:+2838094 | MS.gene26959:CDS |
| TGATGGTGGTGAGGTGGATG+AGG | 0.488135 | 1.3:+2831912 | MS.gene26959:CDS |
| CATGGAGGCAACCCCTAGCT+TGG | 0.491145 | 1.3:+2833403 | MS.gene26959:CDS |
| GTAGAAGAAGTAGAAGGTTG+TGG | 0.494820 | 1.3:-2831431 | None:intergenic |
| GGTGAGAATTTCAATGCGGT+TGG | 0.495729 | 1.3:+2831820 | MS.gene26959:CDS |
| ATCAAGGGTGTTACATATTG+TGG | 0.497705 | 1.3:+2838110 | MS.gene26959:CDS |
| ACCCTTGATTTCAATGAAGT+CGG | 0.497934 | 1.3:-2838096 | None:intergenic |
| TTCGAGGAAGCTGGTGGCTA+CGG | 0.500414 | 1.3:+2832113 | MS.gene26959:CDS |
| AGAGTCTGATGAGGAGGAAG+AGG | 0.501593 | 1.3:+2832044 | MS.gene26959:CDS |
| CAGCATTCCATCCTTTCACA+AGG | 0.501696 | 1.3:-2838031 | None:intergenic |
| GTTGAATGGAAAGAAAGAAA+TGG | 0.505644 | 1.3:+2832155 | MS.gene26959:CDS |
| GAAAAGTTGGGTGTGGGAGA+TGG | 0.507932 | 1.3:+2833478 | MS.gene26959:CDS |
| CCCAAGTGGAAGCAACGATA+AGG | 0.508085 | 1.3:-2831663 | None:intergenic |
| GAATTTCAATGCGGTTGGTA+AGG | 0.508915 | 1.3:+2831825 | MS.gene26959:CDS |
| TATTTGCACATGCCAAGCTA+GGG | 0.514611 | 1.3:-2833415 | None:intergenic |
| TCACTCGTGTTGTGTCCTCT+TGG | 0.516638 | 1.3:+2838348 | MS.gene26959:CDS |
| GGATTCCTTGACTGCTCTGA+AGG | 0.516788 | 1.3:+2837977 | MS.gene26959:intron |
| TGAGGAGGAAGAGGCGGAGT+CGG | 0.518460 | 1.3:+2832053 | MS.gene26959:CDS |
| GGTAACGAGATGATTCCGTT+GGG | 0.519802 | 1.3:+2831877 | MS.gene26959:CDS |
| GAGGAAGGTGGATTTGATCC+AGG | 0.523501 | 1.3:+2838596 | MS.gene26959:CDS |
| AGGTGAGGAAACGGTGGAGG+CGG | 0.524499 | 1.3:-2831567 | None:intergenic |
| GTGAAAAGGATGAAGGCGTT+GGG | 0.527775 | 1.3:+2831853 | MS.gene26959:CDS |
| CAGTAGCGAAAAGTTGGGTG+TGG | 0.532702 | 1.3:+2833471 | MS.gene26959:CDS |
| CTCAGCTCCATAGACGGCCC+AGG | 0.534622 | 1.3:-2838576 | None:intergenic |
| TAAAGCACCTTCGAGGAAGC+TGG | 0.534689 | 1.3:+2832104 | MS.gene26959:CDS |
| GGTGTCGGTAGTGGAGGTTA+TGG | 0.534919 | 1.3:+2831799 | MS.gene26959:CDS |
| GGTTGTTTGAGGTGAGGAAA+CGG | 0.535614 | 1.3:-2831576 | None:intergenic |
| GTCGAATGCAAGGTTGTTTG+AGG | 0.536695 | 1.3:-2831587 | None:intergenic |
| TTTGTCGAAGTGTAGATTTG+CGG | 0.536931 | 1.3:+2831771 | MS.gene26959:CDS |
| AAGTCACAGCTTCGAGGTCG+AGG | 0.539284 | 1.3:+2832798 | MS.gene26959:CDS |
| TTGATGGCCAGTGGTATACA+TGG | 0.541192 | 1.3:+2838392 | MS.gene26959:CDS |
| GTTGCTTCCACTTGGGAAGA+CGG | 0.542672 | 1.3:+2831670 | MS.gene26959:CDS |
| CATGGCTGCCACACCAACCT+GGG | 0.543474 | 1.3:+2838559 | MS.gene26959:CDS |
| TTGAGGTGAGGAAACGGTGG+AGG | 0.544628 | 1.3:-2831570 | None:intergenic |
| ATTCTTCGCCGATTGGCTTG+CGG | 0.545441 | 1.3:+2831714 | MS.gene26959:CDS |
| CTCTGTCTCTGAAAAGCCAA+GGG | 0.546175 | 1.3:+2838299 | MS.gene26959:CDS |
| AGGAGATGTTGATGGTGGTG+AGG | 0.548049 | 1.3:+2831903 | MS.gene26959:CDS |
| TGTTGGTTTGAGAAATGAAG+AGG | 0.549143 | 1.3:-2831525 | None:intergenic |
| GCTTTCACGTCGGCATGCCA+AGG | 0.550330 | 1.3:-2838265 | None:intergenic |
| GAAGCTGGTGGCTACGGTGA+AGG | 0.550823 | 1.3:+2832119 | MS.gene26959:CDS |
| GCCTGACCCTTGTGAAAGGA+TGG | 0.553096 | 1.3:+2838024 | MS.gene26959:CDS |
| TGAAGAAGAGTCTGATGAGG+AGG | 0.553756 | 1.3:+2832038 | MS.gene26959:CDS |
| CGAACTCTCCGCAAGCCAAT+CGG | 0.555358 | 1.3:-2831722 | None:intergenic |
| TGGACTAAGTCACAGCTTCG+AGG | 0.559406 | 1.3:+2832792 | MS.gene26959:CDS |
| AGGCAACTTCATACTCCCCT+TGG | 0.560657 | 1.3:-2838315 | None:intergenic |
| TGTGAAAAGGATGAAGGCGT+TGG | 0.562274 | 1.3:+2831852 | MS.gene26959:CDS |
| AACGGTGGAGGCGGTTAGAG+AGG | 0.565434 | 1.3:-2831558 | None:intergenic |
| CCTTATCGTTGCTTCCACTT+GGG | 0.567188 | 1.3:+2831663 | MS.gene26959:CDS |
| GTCTGATGAGGAGGAAGAGG+CGG | 0.567189 | 1.3:+2832047 | MS.gene26959:CDS |
| TGCTACATCAAAATTAACAA+TGG | 0.568819 | 1.3:+2838234 | MS.gene26959:CDS |
| TAACAATGGAAAATGTCCCT+TGG | 0.571608 | 1.3:+2838248 | MS.gene26959:CDS |
| CGAGCTGGTACTGATGAGAA+TGG | 0.571729 | 1.3:-2831382 | None:intergenic |
| AGTCTATCCATGTATACCAC+TGG | 0.572314 | 1.3:-2838399 | None:intergenic |
| GCTCTGTCTCTGAAAAGCCA+AGG | 0.575623 | 1.3:+2838298 | MS.gene26959:CDS |
| TCCAGAGATAAATACACTTG+TGG | 0.576447 | 1.3:+2837432 | MS.gene26959:CDS |
| TCAGGCGGTATACAGTGCGC+TGG | 0.577014 | 1.3:-2838007 | None:intergenic |
| ACGGTGGAGGCGGTTAGAGA+GGG | 0.577423 | 1.3:-2831557 | None:intergenic |
| GCTACGGTGAAGGAGAGTAA+TGG | 0.579239 | 1.3:+2832129 | MS.gene26959:CDS |
| TGGTAACGAGATGATTCCGT+TGG | 0.580232 | 1.3:+2831876 | MS.gene26959:CDS |
| AGATGTTGATGGTGGTGAGG+TGG | 0.580983 | 1.3:+2831906 | MS.gene26959:CDS |
| GCTCCATAGACGGCCCAGGT+TGG | 0.581273 | 1.3:-2838572 | None:intergenic |
| GGAGATTGTGAAAAGGATGA+AGG | 0.581317 | 1.3:+2831846 | MS.gene26959:CDS |
| GCCGTCTATGGAGCTGAGGA+AGG | 0.583318 | 1.3:+2838581 | MS.gene26959:CDS |
| TGGATGAGTTGCACAAAAGG+AGG | 0.584833 | 1.3:+2837452 | MS.gene26959:CDS |
| AAATCCAGTAGCGAAAAGTT+GGG | 0.586529 | 1.3:+2833466 | MS.gene26959:CDS |
| TTGCCGGTAAAGCACCTTCG+AGG | 0.590223 | 1.3:+2832097 | MS.gene26959:CDS |
| TTGGTAAGGAGATTGTGAAA+AGG | 0.592319 | 1.3:+2831839 | MS.gene26959:CDS |
| AAGAATTTATACTCCGGCGG+TGG | 0.594684 | 1.3:-2831697 | None:intergenic |
| CAGTGTAGATGCCGGAACAA+AGG | 0.595194 | 1.3:+2837633 | MS.gene26959:CDS |
| AATATGATTAAACAAATGAA+AGG | 0.595549 | 1.3:+2833545 | MS.gene26959:CDS |
| GTGGTGTCAAGATTTGTAGA+TGG | 0.595777 | 1.3:+2832772 | MS.gene26959:CDS |
| GAAGAAGTAGAAGGTTGTGG+CGG | 0.596045 | 1.3:-2831428 | None:intergenic |
| AGATTTGCGGTATTCGGTGT+CGG | 0.597906 | 1.3:+2831784 | MS.gene26959:CDS |
| TGATGAAGAAGAGTCTGATG+AGG | 0.598927 | 1.3:+2832035 | MS.gene26959:CDS |
| ACACGAGTGAACATGCTCAC+AGG | 0.600820 | 1.3:-2838335 | None:intergenic |
| ATAGACGGCCCAGGTTGGTG+TGG | 0.603773 | 1.3:-2838567 | None:intergenic |
| ATCCTTTCACAAGGGTCAGG+CGG | 0.604119 | 1.3:-2838022 | None:intergenic |
| GTCTATGGAGCTGAGGAAGG+TGG | 0.604936 | 1.3:+2838584 | MS.gene26959:CDS |
| ATGCAAGGTTGTTTGAGGTG+AGG | 0.606431 | 1.3:-2831582 | None:intergenic |
| CTTTCACGTCGGCATGCCAA+GGG | 0.607070 | 1.3:-2838264 | None:intergenic |
| TTATATGTCAGTGTAGATGC+CGG | 0.607545 | 1.3:+2837625 | MS.gene26959:CDS |
| TGTTTGAGGTGAGGAAACGG+TGG | 0.612358 | 1.3:-2831573 | None:intergenic |
| CCCGACTTCATTGAAATCAA+GGG | 0.615860 | 1.3:+2838095 | MS.gene26959:CDS |
| ACCTCGGAGCGATTAACTGA+AGG | 0.618092 | 1.3:+2837358 | MS.gene26959:CDS |
| CTTGCATTCGACATCATCGA+TGG | 0.618944 | 1.3:+2831598 | MS.gene26959:CDS |
| CTGGGCCGTCTATGGAGCTG+AGG | 0.620448 | 1.3:+2838577 | MS.gene26959:CDS |
| TCCCAGAAATCTCCAAAGAG+TGG | 0.620464 | 1.3:-2837679 | None:intergenic |
| GGGGAAGGAGATGTTGATGG+TGG | 0.624176 | 1.3:+2831898 | MS.gene26959:CDS |
| ATACTGAAAGGTGTTGATGA+TGG | 0.624454 | 1.3:+2831967 | MS.gene26959:CDS |
| AGTAGCGAAAAGTTGGGTGT+GGG | 0.624662 | 1.3:+2833472 | MS.gene26959:CDS |
| TAACGAGATGATTCCGTTGG+GGG | 0.625747 | 1.3:+2831879 | MS.gene26959:CDS |
| TTGTGGCGGAGAAGAGAGCG+AGG | 0.627299 | 1.3:-2831414 | None:intergenic |
| GTAGCCACCAGCTTCCTCGA+AGG | 0.629332 | 1.3:-2832111 | None:intergenic |
| AAGATTATTGGTTCACACAG+TGG | 0.629945 | 1.3:+2832753 | MS.gene26959:CDS |
| ACCTTCCTCAGCTCCATAGA+CGG | 0.630071 | 1.3:-2838582 | None:intergenic |
| TTGGCTTGCGGAGAGTTCGG+AGG | 0.639532 | 1.3:+2831726 | MS.gene26959:CDS |
| TACCGCCTGACCCTTGTGAA+AGG | 0.639713 | 1.3:+2838020 | MS.gene26959:CDS |
| ATTTGCACATGCCAAGCTAG+GGG | 0.639964 | 1.3:-2833414 | None:intergenic |
| AGTTCAAAATTGATGGCCAG+TGG | 0.640034 | 1.3:+2838383 | MS.gene26959:CDS |
| CTGAAAGGTGTTGATGATGG+TGG | 0.640774 | 1.3:+2831970 | MS.gene26959:CDS |
| TGATTTGGAGAATGCTGAGG+AGG | 0.642559 | 1.3:+2831993 | MS.gene26959:CDS |
| TTATGAGTGAAATAGGTGCA+TGG | 0.642687 | 1.3:+2833385 | MS.gene26959:intron |
| GTATTCGGTGTCGGTAGTGG+AGG | 0.643075 | 1.3:+2831793 | MS.gene26959:CDS |
| TAAGGAGAAGCGTTTCCTTG+GGG | 0.648137 | 1.3:-2831645 | None:intergenic |
| AGAGATAATGCACAATGCCG+TGG | 0.654133 | 1.3:-2837388 | None:intergenic |
| GTAACGAGATGATTCCGTTG+GGG | 0.654757 | 1.3:+2831878 | MS.gene26959:CDS |
| AGCATTCCATCCTTTCACAA+GGG | 0.657631 | 1.3:-2838030 | None:intergenic |
| GGAAGACGGAAAACCACCGC+CGG | 0.657646 | 1.3:+2831684 | MS.gene26959:CDS |
| GAGAATGCTGAGGAGGAAAG+CGG | 0.660819 | 1.3:+2832000 | MS.gene26959:CDS |
| TCACAGCTTCGAGGTCGAGG+TGG | 0.662705 | 1.3:+2832801 | MS.gene26959:CDS |
| CATCGATGATGTCGAATGCA+AGG | 0.667846 | 1.3:-2831597 | None:intergenic |
| AAAAGGATGAAGGCGTTGGG+TGG | 0.672975 | 1.3:+2831856 | MS.gene26959:CDS |
| AGCACCTTCGAGGAAGCTGG+TGG | 0.676170 | 1.3:+2832107 | MS.gene26959:CDS |
| CTCCGAGAAAGCTTTCACGT+CGG | 0.679985 | 1.3:-2838275 | None:intergenic |
| AAGGTTGTTGGAATACTGAA+AGG | 0.681691 | 1.3:+2831955 | MS.gene26959:CDS |
| TCGGCGAAGAATTTATACTC+CGG | 0.685809 | 1.3:-2831703 | None:intergenic |
| GCGAAGAATTTATACTCCGG+CGG | 0.686331 | 1.3:-2831700 | None:intergenic |
| TAACTGAAGGCATGACACCA+CGG | 0.686690 | 1.3:+2837371 | MS.gene26959:CDS |
| TGGTACTGATGAGAATGGCA+TGG | 0.701260 | 1.3:-2831377 | None:intergenic |
| TGGTGATTTGGAGAATGCTG+AGG | 0.702453 | 1.3:+2831990 | MS.gene26959:CDS |
| GCCTTCAGTTAATCGCTCCG+AGG | 0.710873 | 1.3:-2837359 | None:intergenic |
| CGAACCCGAAGATCTCCCCA+AGG | 0.723663 | 1.3:+2831630 | MS.gene26959:CDS |
| CGACGTGAAAGCTTTCTCGG+AGG | 0.740056 | 1.3:+2838276 | MS.gene26959:CDS |
| TCTGTCTCTGAAAAGCCAAG+GGG | 0.741241 | 1.3:+2838300 | MS.gene26959:CDS |
| TGAGTGAAATAGGTGCATGG+AGG | 0.759000 | 1.3:+2833388 | MS.gene26959:intron |
| TTATGGTGAGAATTTCAATG+CGG | 0.771681 | 1.3:+2831816 | MS.gene26959:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2831379 | 2838676 | 2831379 | ID=MS.gene26959 |
| chr1.3 | mRNA | 2831379 | 2838676 | 2831379 | ID=MS.gene26959.t1;Parent=MS.gene26959 |
| chr1.3 | exon | 2831379 | 2832212 | 2831379 | ID=MS.gene26959.t1.exon1;Parent=MS.gene26959.t1 |
| chr1.3 | CDS | 2831379 | 2832212 | 2831379 | ID=cds.MS.gene26959.t1;Parent=MS.gene26959.t1 |
| chr1.3 | exon | 2832747 | 2832862 | 2832747 | ID=MS.gene26959.t1.exon2;Parent=MS.gene26959.t1 |
| chr1.3 | CDS | 2832747 | 2832862 | 2832747 | ID=cds.MS.gene26959.t1;Parent=MS.gene26959.t1 |
| chr1.3 | exon | 2833400 | 2833575 | 2833400 | ID=MS.gene26959.t1.exon3;Parent=MS.gene26959.t1 |
| chr1.3 | CDS | 2833400 | 2833575 | 2833400 | ID=cds.MS.gene26959.t1;Parent=MS.gene26959.t1 |
| chr1.3 | exon | 2837353 | 2837543 | 2837353 | ID=MS.gene26959.t1.exon4;Parent=MS.gene26959.t1 |
| chr1.3 | CDS | 2837353 | 2837543 | 2837353 | ID=cds.MS.gene26959.t1;Parent=MS.gene26959.t1 |
| chr1.3 | exon | 2837625 | 2837711 | 2837625 | ID=MS.gene26959.t1.exon5;Parent=MS.gene26959.t1 |
| chr1.3 | CDS | 2837625 | 2837711 | 2837625 | ID=cds.MS.gene26959.t1;Parent=MS.gene26959.t1 |
| chr1.3 | exon | 2837978 | 2838135 | 2837978 | ID=MS.gene26959.t1.exon6;Parent=MS.gene26959.t1 |
| chr1.3 | CDS | 2837978 | 2838135 | 2837978 | ID=cds.MS.gene26959.t1;Parent=MS.gene26959.t1 |
| chr1.3 | exon | 2838231 | 2838441 | 2838231 | ID=MS.gene26959.t1.exon7;Parent=MS.gene26959.t1 |
| chr1.3 | CDS | 2838231 | 2838441 | 2838231 | ID=cds.MS.gene26959.t1;Parent=MS.gene26959.t1 |
| chr1.3 | exon | 2838524 | 2838676 | 2838524 | ID=MS.gene26959.t1.exon8;Parent=MS.gene26959.t1 |
| chr1.3 | CDS | 2838524 | 2838676 | 2838524 | ID=cds.MS.gene26959.t1;Parent=MS.gene26959.t1 |
| Gene Sequence |
| Protein sequence |