Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053618.t1 | XP_003608349.1 | 94.4 | 483 | 27 | 0 | 1 | 483 | 1 | 483 | 6.30E-223 | 783.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053618.t1 | Q7Y214 | 42.4 | 543 | 238 | 10 | 1 | 483 | 1 | 528 | 1.0e-72 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053618.t1 | A0A072UP94 | 94.4 | 483 | 27 | 0 | 1 | 483 | 1 | 483 | 4.5e-223 | 783.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053618 | MS.gene053620 | 0.925355 | 2.05E-90 | -1.69E-46 |
| MS.gene053618 | MS.gene071779 | 0.824244 | 8.97E-54 | -1.69E-46 |
| MS.gene053618 | MS.gene20117 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene053618 | MS.gene27594 | 0.80412 | 2.52E-49 | -1.69E-46 |
| MS.gene053618 | MS.gene40087 | 0.824048 | 9.97E-54 | -1.69E-46 |
| MS.gene053618 | MS.gene40090 | 0.829666 | 4.53E-55 | -1.69E-46 |
| MS.gene053618 | MS.gene40093 | 0.864237 | 1.41E-64 | -1.69E-46 |
| MS.gene053618 | MS.gene89369 | 0.810433 | 1.16E-50 | -1.69E-46 |
| MS.gene053618 | MS.gene90260 | 0.832111 | 1.14E-55 | -1.69E-46 |
| MS.gene053618 | MS.gene90263 | 0.82835 | 9.44E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73119 | MS.gene053618 | PPI |
| MS.gene23912 | MS.gene053618 | PPI |
| MS.gene037356 | MS.gene053618 | PPI |
| MS.gene84252 | MS.gene053618 | PPI |
| MS.gene029093 | MS.gene053618 | PPI |
| MS.gene066439 | MS.gene053618 | PPI |
| MS.gene064542 | MS.gene053618 | PPI |
| MS.gene019660 | MS.gene053618 | PPI |
| MS.gene90825 | MS.gene053618 | PPI |
| MS.gene029217 | MS.gene053618 | PPI |
| MS.gene035805 | MS.gene053618 | PPI |
| MS.gene97346 | MS.gene053618 | PPI |
| MS.gene93135 | MS.gene053618 | PPI |
| MS.gene056804 | MS.gene053618 | PPI |
| MS.gene029219 | MS.gene053618 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053618.t1 | MTR_4g092900 | 96.998 | 533 | 16 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1055 |
| MS.gene053618.t1 | MTR_4g092900 | 96.887 | 514 | 16 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1017 |
| MS.gene053618.t1 | MTR_4g092880 | 82.657 | 542 | 53 | 7 | 1 | 533 | 1 | 510 | 0.0 | 820 |
| MS.gene053618.t1 | MTR_4g092880 | 83.422 | 374 | 46 | 5 | 1 | 366 | 1 | 366 | 0.0 | 617 |
| MS.gene053618.t1 | MTR_2g091130 | 45.763 | 295 | 132 | 6 | 131 | 425 | 283 | 549 | 5.02e-69 | 234 |
| MS.gene053618.t1 | MTR_2g091135 | 43.878 | 294 | 119 | 8 | 141 | 425 | 304 | 560 | 5.18e-64 | 220 |
| MS.gene053618.t1 | MTR_2g091135 | 43.878 | 294 | 119 | 8 | 141 | 425 | 304 | 560 | 7.17e-64 | 220 |
| MS.gene053618.t1 | MTR_4g079650 | 40.278 | 288 | 101 | 9 | 145 | 425 | 656 | 879 | 4.72e-50 | 185 |
| MS.gene053618.t1 | MTR_4g079650 | 40.278 | 288 | 101 | 9 | 145 | 425 | 656 | 879 | 6.03e-50 | 185 |
| MS.gene053618.t1 | MTR_4g079650 | 42.041 | 245 | 98 | 8 | 145 | 382 | 656 | 863 | 6.16e-46 | 172 |
| MS.gene053618.t1 | MTR_3g075040 | 28.041 | 485 | 226 | 15 | 51 | 487 | 79 | 488 | 3.53e-42 | 160 |
| MS.gene053618.t1 | MTR_3g075040 | 28.041 | 485 | 226 | 15 | 51 | 487 | 79 | 488 | 1.36e-41 | 159 |
| MS.gene053618.t1 | MTR_2g018270 | 40.571 | 175 | 91 | 5 | 95 | 266 | 29 | 193 | 1.29e-26 | 113 |
| MS.gene053618.t1 | MTR_6g033375 | 26.667 | 375 | 213 | 10 | 97 | 460 | 13 | 336 | 6.32e-26 | 108 |
| MS.gene053618.t1 | MTR_8g070660 | 38.028 | 142 | 78 | 6 | 109 | 245 | 56 | 192 | 8.10e-21 | 92.8 |
| MS.gene053618.t1 | MTR_8g070660 | 36.184 | 152 | 88 | 5 | 98 | 245 | 46 | 192 | 1.49e-20 | 94.0 |
| MS.gene053618.t1 | MTR_5g069490 | 25.581 | 258 | 133 | 7 | 159 | 413 | 111 | 312 | 9.92e-16 | 79.0 |
| MS.gene053618.t1 | MTR_2g437920 | 44.444 | 81 | 42 | 2 | 167 | 244 | 149 | 229 | 3.59e-14 | 74.7 |
| MS.gene053618.t1 | MTR_2g033390 | 88.571 | 35 | 4 | 0 | 463 | 497 | 410 | 444 | 3.94e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053618.t1 | AT1G73150 | 38.287 | 397 | 208 | 9 | 37 | 429 | 23 | 386 | 3.65e-63 | 213 |
| MS.gene053618.t1 | AT1G17790 | 37.995 | 379 | 194 | 10 | 55 | 420 | 49 | 399 | 2.46e-59 | 204 |
| MS.gene053618.t1 | AT1G73150 | 34.461 | 473 | 246 | 11 | 37 | 504 | 23 | 436 | 2.01e-55 | 193 |
| MS.gene053618.t1 | AT1G06230 | 42.647 | 272 | 133 | 6 | 144 | 414 | 421 | 670 | 6.74e-54 | 195 |
| MS.gene053618.t1 | AT1G06230 | 42.647 | 272 | 133 | 6 | 144 | 414 | 421 | 670 | 6.74e-54 | 195 |
| MS.gene053618.t1 | AT1G06230 | 42.647 | 272 | 133 | 6 | 144 | 414 | 421 | 670 | 6.74e-54 | 195 |
| MS.gene053618.t1 | AT1G06230 | 42.647 | 272 | 133 | 6 | 144 | 414 | 421 | 670 | 6.74e-54 | 195 |
| MS.gene053618.t1 | AT5G65630 | 58.940 | 151 | 54 | 1 | 337 | 487 | 390 | 532 | 2.18e-47 | 174 |
| MS.gene053618.t1 | AT5G10550 | 54.667 | 150 | 61 | 2 | 337 | 486 | 385 | 527 | 1.27e-41 | 158 |
| MS.gene053618.t1 | AT5G14270 | 30.543 | 442 | 218 | 14 | 77 | 503 | 64 | 431 | 3.52e-40 | 155 |
| MS.gene053618.t1 | AT5G14270 | 30.543 | 442 | 218 | 14 | 77 | 503 | 64 | 431 | 3.53e-40 | 155 |
| MS.gene053618.t1 | AT5G14270 | 30.543 | 442 | 218 | 14 | 77 | 503 | 64 | 431 | 3.53e-40 | 155 |
| MS.gene053618.t1 | AT5G63320 | 29.646 | 452 | 220 | 17 | 64 | 487 | 60 | 441 | 2.20e-39 | 150 |
| MS.gene053618.t1 | AT5G63320 | 29.646 | 452 | 220 | 17 | 64 | 487 | 60 | 441 | 2.20e-39 | 150 |
| MS.gene053618.t1 | AT5G63320 | 29.646 | 452 | 220 | 17 | 64 | 487 | 60 | 441 | 7.57e-38 | 149 |
| MS.gene053618.t1 | AT3G27260 | 31.234 | 381 | 179 | 14 | 104 | 482 | 142 | 441 | 1.24e-33 | 135 |
| MS.gene053618.t1 | AT3G27260 | 31.070 | 383 | 177 | 15 | 104 | 482 | 142 | 441 | 1.51e-33 | 136 |
| MS.gene053618.t1 | AT3G27260 | 31.234 | 381 | 179 | 14 | 104 | 482 | 142 | 441 | 2.10e-33 | 135 |
| MS.gene053618.t1 | AT3G27260 | 31.070 | 383 | 177 | 15 | 104 | 482 | 93 | 392 | 2.17e-33 | 135 |
| MS.gene053618.t1 | AT3G01770 | 30.714 | 420 | 203 | 14 | 82 | 487 | 60 | 405 | 4.19e-33 | 132 |
| MS.gene053618.t1 | AT3G01770 | 31.892 | 370 | 177 | 11 | 145 | 510 | 130 | 428 | 1.93e-32 | 132 |
| MS.gene053618.t1 | AT5G46550 | 40.741 | 135 | 67 | 2 | 148 | 282 | 73 | 194 | 3.80e-24 | 106 |
| MS.gene053618.t1 | AT3G52280 | 26.642 | 274 | 150 | 6 | 143 | 411 | 93 | 320 | 9.23e-24 | 103 |
| MS.gene053618.t1 | AT3G52280 | 26.642 | 274 | 150 | 6 | 143 | 411 | 110 | 337 | 1.38e-23 | 103 |
| MS.gene053618.t1 | AT2G34900 | 26.852 | 324 | 184 | 7 | 143 | 460 | 109 | 385 | 6.50e-23 | 101 |
| MS.gene053618.t1 | AT2G34900 | 27.575 | 301 | 170 | 5 | 166 | 460 | 17 | 275 | 2.01e-22 | 97.8 |
| MS.gene053618.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.49e-11 | 65.9 |
| MS.gene053618.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.49e-11 | 65.9 |
| MS.gene053618.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.66e-11 | 65.9 |
| MS.gene053618.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.66e-11 | 65.9 |
| MS.gene053618.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.66e-11 | 65.9 |
| MS.gene053618.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 5.28e-11 | 65.5 |
Find 156 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCATTTCCCTCTTATT+TGG | 0.124253 | 4.4:+21609632 | None:intergenic |
| CTTTGGCTTGGGCTGCTTCA+AGG | 0.184318 | 4.4:+21609664 | None:intergenic |
| TTCAAAGCCGTTGCATTTAC+AGG | 0.229221 | 4.4:+21610154 | None:intergenic |
| CCTCTGTGTTGCAGCCAATT+TGG | 0.258953 | 4.4:+21610634 | None:intergenic |
| ACCCTCTCCCTTTCCCTCTC+TGG | 0.292850 | 4.4:+21609851 | None:intergenic |
| TTGTTACTAAATTTAGGGTT+AGG | 0.292960 | 4.4:+21610577 | None:intergenic |
| TCCAGTGGCTCCAGCAGTTC+TGG | 0.296431 | 4.4:-21609060 | MS.gene053618:CDS |
| TCAGGGAGCAAGAAGGTTTC+CGG | 0.305508 | 4.4:-21610322 | MS.gene053618:CDS |
| GAGTCTTAAGCTGACGAATT+TGG | 0.320746 | 4.4:+21610407 | None:intergenic |
| GGATCCCTGGCCTTTGGCTT+GGG | 0.322222 | 4.4:+21609653 | None:intergenic |
| TTCCCTCTTATTTGGATCCC+TGG | 0.326630 | 4.4:+21609640 | None:intergenic |
| TGGATCCCTGGCCTTTGGCT+TGG | 0.328127 | 4.4:+21609652 | None:intergenic |
| TTTGGCTTGGGCTGCTTCAA+GGG | 0.331789 | 4.4:+21609665 | None:intergenic |
| GCATCAACCTTCTCCCTATC+AGG | 0.335506 | 4.4:+21609237 | None:intergenic |
| TCGGATTCAGGGAGTTCTTC+AGG | 0.341320 | 4.4:-21608931 | MS.gene053618:CDS |
| TCACTGGAAGTGCTCGCGTT+GGG | 0.343551 | 4.4:+21609690 | None:intergenic |
| TTATTTGGATCCCTGGCCTT+TGG | 0.344705 | 4.4:+21609647 | None:intergenic |
| ACCCCATTGCCTTTGTTTGA+AGG | 0.345351 | 4.4:+21609371 | None:intergenic |
| GGCTGCTTCAAGGGCTTCAC+TGG | 0.348486 | 4.4:+21609674 | None:intergenic |
| ACCACCGTTGTGGTTTAGCC+TGG | 0.356873 | 4.4:+21610360 | None:intergenic |
| ACCGGTGGAGGGATTGGAAT+TGG | 0.357465 | 4.4:+21609812 | None:intergenic |
| GATTGAGAAAGATAAAGATA+TGG | 0.363334 | 4.4:-21609112 | MS.gene053618:CDS |
| CAGGCTCAGGCAGTGGCTCT+TGG | 0.369449 | 4.4:+21609780 | None:intergenic |
| AATTAAGCATCCTATGGATC+TGG | 0.371201 | 4.4:-21610110 | MS.gene053618:CDS |
| CGAACTGGTGACTGAGCTAA+TGG | 0.371584 | 4.4:+21609722 | None:intergenic |
| ACAACCGTAACGAACCAAAT+TGG | 0.373779 | 4.4:-21610648 | MS.gene053618:CDS |
| AAGAAATCAAAGTCAGAGAT+TGG | 0.382024 | 4.4:-21610265 | MS.gene053618:CDS |
| GATTAAGCGGCAGGCACTAA+TGG | 0.383204 | 4.4:-21609408 | MS.gene053618:CDS |
| TCATCAAATTTCTCGTGTAT+TGG | 0.386676 | 4.4:+21609923 | None:intergenic |
| GATAAAGATATGGGTGCTAC+TGG | 0.388967 | 4.4:-21609102 | MS.gene053618:CDS |
| CTGTTGACACAGAGACTCTC+TGG | 0.394963 | 4.4:-21609475 | MS.gene053618:CDS |
| CTTGCTCCCTGATTTCTTAG+TGG | 0.395685 | 4.4:+21610333 | None:intergenic |
| ACAGGTGGGAAGTTGTTTGC+AGG | 0.399570 | 4.4:+21609138 | None:intergenic |
| TTGCTCCCTGATTTCTTAGT+GGG | 0.400065 | 4.4:+21610334 | None:intergenic |
| GGTGGTCCCACTAAGAAATC+AGG | 0.406385 | 4.4:-21610340 | MS.gene053618:CDS |
| TTTGCTACCGGTGGAGGGAT+TGG | 0.415792 | 4.4:+21609806 | None:intergenic |
| CTTAAGACTCGAATTGAATC+AGG | 0.417831 | 4.4:-21610394 | MS.gene053618:CDS |
| TGCCTTCAAACAAAGGCAAT+GGG | 0.422340 | 4.4:-21609373 | MS.gene053618:CDS |
| AGGAAAAGGTCGTTTGTTGC+CGG | 0.425299 | 4.4:+21610303 | None:intergenic |
| TTCTGCTTCTTCCCCTCAGA+AGG | 0.429158 | 4.4:+21609207 | None:intergenic |
| TTGATCGATTGGTTACCAAT+TGG | 0.429518 | 4.4:-21609448 | MS.gene053618:CDS |
| CTAAATTTAGGGTTAGGGTT+AGG | 0.433996 | 4.4:+21610583 | None:intergenic |
| AGAAATCAAAGTCAGAGATT+GGG | 0.434900 | 4.4:-21610264 | MS.gene053618:CDS |
| GGATGAGATTGAGCTTGATA+TGG | 0.436408 | 4.4:-21609501 | MS.gene053618:CDS |
| ATTTATAGGAATTGCCTGAT+AGG | 0.436557 | 4.4:-21609251 | MS.gene053618:intron |
| TGTTACTAAATTTAGGGTTA+GGG | 0.446081 | 4.4:+21610578 | None:intergenic |
| AGGCGGTGGAGCTGAATTCA+TGG | 0.450284 | 4.4:-21610614 | MS.gene053618:CDS |
| TGATATAATTAAGCATCCTA+TGG | 0.454884 | 4.4:-21610116 | MS.gene053618:CDS |
| AATTCCTTCACCGCAGGAAA+AGG | 0.459833 | 4.4:+21610289 | None:intergenic |
| ATGGGCATCTGGAGCAAGAT+GGG | 0.463782 | 4.4:-21609523 | MS.gene053618:CDS |
| GCAGCCAATTTGGTTCGTTA+CGG | 0.464960 | 4.4:+21610644 | None:intergenic |
| AAGGAAGAGAAATGGGCATC+TGG | 0.467249 | 4.4:-21609534 | MS.gene053618:CDS |
| AACAGGTAGTGCAGATCATA+AGG | 0.470734 | 4.4:-21609553 | MS.gene053618:CDS |
| GCTTCTTCCCCTCAGAAGGA+GGG | 0.472060 | 4.4:+21609211 | None:intergenic |
| GTTGGGGAGGGTATGCGAAC+TGG | 0.475235 | 4.4:+21609707 | None:intergenic |
| TGGAAGTGCTCGCGTTGGGG+AGG | 0.475254 | 4.4:+21609694 | None:intergenic |
| TGCTTCTTCCCCTCAGAAGG+AGG | 0.477582 | 4.4:+21609210 | None:intergenic |
| TTCACTGGAAGTGCTCGCGT+TGG | 0.478335 | 4.4:+21609689 | None:intergenic |
| AGCAGCCCAAGCCAAAGGCC+AGG | 0.478818 | 4.4:-21609658 | MS.gene053618:CDS |
| ACTACCTGTTCCATCTTCTC+TGG | 0.479486 | 4.4:+21609566 | None:intergenic |
| ACCAGAACTGCTGGAGCCAC+TGG | 0.480494 | 4.4:+21609059 | None:intergenic |
| GTGTTAACATCATGGCCCTT+GGG | 0.480899 | 4.4:+21609989 | None:intergenic |
| AGGCCAGGGATCCAAATAAG+AGG | 0.482051 | 4.4:-21609643 | MS.gene053618:CDS |
| GGGGATTCGAAGTGCTTGGC+TGG | 0.485173 | 4.4:+21609744 | None:intergenic |
| TTATCTTTCTCAATCTCCAC+AGG | 0.486073 | 4.4:+21609120 | None:intergenic |
| AGAGATTGGGGATGCGATGA+AGG | 0.491863 | 4.4:-21610251 | MS.gene053618:CDS |
| CAGATCATAAGGAAGAGAAA+TGG | 0.492121 | 4.4:-21609542 | MS.gene053618:CDS |
| GTACTAGCAGGCTCAGGCAG+TGG | 0.495175 | 4.4:+21609773 | None:intergenic |
| GCCACCAGAGAAGATGGAAC+AGG | 0.495605 | 4.4:-21609570 | MS.gene053618:CDS |
| AGATCATAAGGAAGAGAAAT+GGG | 0.498119 | 4.4:-21609541 | MS.gene053618:CDS |
| GCAGCCCAAGCCAAAGGCCA+GGG | 0.500330 | 4.4:-21609657 | MS.gene053618:CDS |
| ATTGAGAAAGATAAAGATAT+GGG | 0.501674 | 4.4:-21609111 | MS.gene053618:CDS |
| AGTGTTAACATCATGGCCCT+TGG | 0.504161 | 4.4:+21609988 | None:intergenic |
| GTTGGATCGTCGATTGATTG+AGG | 0.506931 | 4.4:+21610522 | None:intergenic |
| TTCTTCAATTCCTTCACCGC+AGG | 0.508468 | 4.4:+21610283 | None:intergenic |
| TTTATAGGAATTGCCTGATA+GGG | 0.508579 | 4.4:-21609250 | MS.gene053618:intron |
| TTTCCCTCTCTGGTTCAACA+TGG | 0.510397 | 4.4:+21609861 | None:intergenic |
| ATGTTGAACCAGAGAGGGAA+AGG | 0.513945 | 4.4:-21609859 | MS.gene053618:CDS |
| AACCAGAGAGGGAAAGGGAG+AGG | 0.515203 | 4.4:-21609853 | MS.gene053618:CDS |
| CTTCTTCCCCTCAGAAGGAG+GGG | 0.516580 | 4.4:+21609212 | None:intergenic |
| ATAAAGATATGGGTGCTACT+GGG | 0.517953 | 4.4:-21609101 | MS.gene053618:CDS |
| ATTGAGGAAGCGTCATCTGA+TGG | 0.524535 | 4.4:+21610538 | None:intergenic |
| TGGCTGCAACACAGAGGCGG+TGG | 0.525481 | 4.4:-21610628 | MS.gene053618:CDS |
| GTGCCTTCAAACAAAGGCAA+TGG | 0.528594 | 4.4:-21609374 | MS.gene053618:CDS |
| CACTGGAAGTGCTCGCGTTG+GGG | 0.529411 | 4.4:+21609691 | None:intergenic |
| GGAATCACTACCAGAACTGC+TGG | 0.529979 | 4.4:+21609050 | None:intergenic |
| CCACCGTTGTGGTTTAGCCT+GGG | 0.530502 | 4.4:+21610361 | None:intergenic |
| GGTGAGCAAGATTAAGCGGC+AGG | 0.533496 | 4.4:-21609417 | MS.gene053618:CDS |
| TCTCTGGGAACTTGATCGAT+TGG | 0.533778 | 4.4:-21609459 | MS.gene053618:CDS |
| AATGGGCATCTGGAGCAAGA+TGG | 0.534346 | 4.4:-21609524 | MS.gene053618:CDS |
| GGAGCCACTGGAACTACTAC+TGG | 0.536891 | 4.4:+21609071 | None:intergenic |
| TTGAGGAAGCGTCATCTGAT+GGG | 0.538515 | 4.4:+21610539 | None:intergenic |
| ATTAAGCATCCTATGGATCT+GGG | 0.539150 | 4.4:-21610109 | MS.gene053618:CDS |
| GAACTGGTGACTGAGCTAAT+GGG | 0.540318 | 4.4:+21609723 | None:intergenic |
| GGAAGTGCTCGCGTTGGGGA+GGG | 0.542081 | 4.4:+21609695 | None:intergenic |
| TTAGAAGTACTAGCAGGCTC+AGG | 0.542104 | 4.4:+21609767 | None:intergenic |
| GTATTGTGAATGATTATCGT+TGG | 0.542418 | 4.4:+21610504 | None:intergenic |
| TCTTTCTCAATCTCCACAGG+TGG | 0.544866 | 4.4:+21609123 | None:intergenic |
| TCAGGAAGTGACTCTGAAGC+GGG | 0.549573 | 4.4:-21608913 | MS.gene053618:CDS |
| TGATGCAACCCCTCCTTCTG+AGG | 0.549763 | 4.4:-21609220 | MS.gene053618:CDS |
| GAAATCAAAGTCAGAGATTG+GGG | 0.550032 | 4.4:-21610263 | MS.gene053618:CDS |
| ACCTGTTCCATCTTCTCTGG+TGG | 0.552351 | 4.4:+21609569 | None:intergenic |
| AATAATGTGCCTTCAAACAA+AGG | 0.557916 | 4.4:-21609380 | MS.gene053618:CDS |
| TAAAGATATGGGTGCTACTG+GGG | 0.560657 | 4.4:-21609100 | MS.gene053618:CDS |
| AGTGACTCTGAAGCGGGCAA+TGG | 0.561285 | 4.4:-21608907 | MS.gene053618:CDS |
| TGCAAACAACTTCCCACCTG+TGG | 0.563862 | 4.4:-21609136 | MS.gene053618:CDS |
| GGCTGGTTAGAAGTACTAGC+AGG | 0.564980 | 4.4:+21609761 | None:intergenic |
| GATGCAACCCCTCCTTCTGA+GGG | 0.565783 | 4.4:-21609219 | MS.gene053618:CDS |
| TGTTGAACCAGAGAGGGAAA+GGG | 0.566133 | 4.4:-21609858 | MS.gene053618:CDS |
| GGCGGTGGAGCTGAATTCAT+GGG | 0.566531 | 4.4:-21610613 | MS.gene053618:CDS |
| CTTGAAGCAGCCCAAGCCAA+AGG | 0.568683 | 4.4:-21609663 | MS.gene053618:CDS |
| ACCAGAGAGGGAAAGGGAGA+GGG | 0.569026 | 4.4:-21609852 | MS.gene053618:CDS |
| TCCAATTCCAATCCCTCCAC+CGG | 0.570278 | 4.4:-21609813 | MS.gene053618:CDS |
| TTCAGGAAGTGACTCTGAAG+CGG | 0.578365 | 4.4:-21608914 | MS.gene053618:CDS |
| TCGCCGCAGTGTTAACATCA+TGG | 0.579958 | 4.4:+21609981 | None:intergenic |
| ATGAATTACAGGCTAGCTCG+TGG | 0.582142 | 4.4:-21609886 | MS.gene053618:CDS |
| CATCGAATCGTACACAAAGA+CGG | 0.584140 | 4.4:-21610470 | MS.gene053618:CDS |
| TAGTGGGACCACCACCGTTG+TGG | 0.584586 | 4.4:+21610350 | None:intergenic |
| AACTGGTGACTGAGCTAATG+GGG | 0.588096 | 4.4:+21609724 | None:intergenic |
| TGCATTGACATACAATCCCA+AGG | 0.588241 | 4.4:-21610005 | MS.gene053618:CDS |
| AGGCTAAACCACAACGGTGG+TGG | 0.594359 | 4.4:-21610358 | MS.gene053618:CDS |
| TTGACAGTACCCAGATCCAT+AGG | 0.596367 | 4.4:+21610100 | None:intergenic |
| TAACACTCCTGTAAATGCAA+CGG | 0.607221 | 4.4:-21610161 | MS.gene053618:CDS |
| GGCCAGGGATCCAAATAAGA+GGG | 0.609397 | 4.4:-21609642 | MS.gene053618:CDS |
| GGTAGTGATTCCTCGTCTAG+TGG | 0.609600 | 4.4:-21609039 | MS.gene053618:intron |
| GAACCATGTTGAACCAGAGA+GGG | 0.610145 | 4.4:-21609864 | MS.gene053618:CDS |
| CTTTCTCAATCTCCACAGGT+GGG | 0.611329 | 4.4:+21609124 | None:intergenic |
| GTGGTCCCACTAAGAAATCA+GGG | 0.612863 | 4.4:-21610339 | MS.gene053618:CDS |
| GGAATTGCCTGATAGGGAGA+AGG | 0.614564 | 4.4:-21609244 | MS.gene053618:CDS |
| TAAGAGGGAAATGAATGTTG+AGG | 0.616464 | 4.4:-21609627 | MS.gene053618:CDS |
| AAAGATATGGGTGCTACTGG+GGG | 0.617281 | 4.4:-21609099 | MS.gene053618:CDS |
| ACATCAGCAGCAAAATCCGC+CGG | 0.619449 | 4.4:+21610046 | None:intergenic |
| TGTTGACACAGAGACTCTCT+GGG | 0.622924 | 4.4:-21609474 | MS.gene053618:CDS |
| TGAGGAAGCGTCATCTGATG+GGG | 0.626247 | 4.4:+21610540 | None:intergenic |
| GGTGCCAGTAGTAGTTCCAG+TGG | 0.626985 | 4.4:-21609075 | MS.gene053618:CDS |
| AGATGGTGAGCAAGATTAAG+CGG | 0.630774 | 4.4:-21609421 | MS.gene053618:CDS |
| TAAGAAATCAGGGAGCAAGA+AGG | 0.642181 | 4.4:-21610329 | MS.gene053618:CDS |
| TGGGCATCTGGAGCAAGATG+GGG | 0.652037 | 4.4:-21609522 | MS.gene053618:CDS |
| TGAGATTGAGCTTGATATGG+AGG | 0.664012 | 4.4:-21609498 | MS.gene053618:CDS |
| GGAACCATGTTGAACCAGAG+AGG | 0.667661 | 4.4:-21609865 | MS.gene053618:CDS |
| GGGGATGCGATGAAGGCTTG+TGG | 0.668675 | 4.4:-21610244 | MS.gene053618:CDS |
| GAAGATAGATACTGTTGACG+AGG | 0.670346 | 4.4:-21609184 | MS.gene053618:CDS |
| TAAGAATGCTTACTCTACGC+CGG | 0.674848 | 4.4:-21610065 | MS.gene053618:CDS |
| GTTGACGAGGATGTTGACAT+TGG | 0.676875 | 4.4:-21609171 | MS.gene053618:CDS |
| GCATTGACATACAATCCCAA+GGG | 0.679665 | 4.4:-21610004 | MS.gene053618:CDS |
| AATTGGCTGCAACACAGAGG+CGG | 0.689298 | 4.4:-21610631 | MS.gene053618:CDS |
| ATGCAACCCCTCCTTCTGAG+GGG | 0.696569 | 4.4:-21609218 | MS.gene053618:CDS |
| AATCAGGTGAGTTTAAACCC+AGG | 0.697049 | 4.4:-21610378 | MS.gene053618:CDS |
| GCCTTCAAACAAAGGCAATG+GGG | 0.698333 | 4.4:-21609372 | MS.gene053618:intron |
| ACTGGTGACTGAGCTAATGG+GGG | 0.699815 | 4.4:+21609725 | None:intergenic |
| AGAGGTTATACCACTAGACG+AGG | 0.704995 | 4.4:+21609029 | None:intergenic |
| GAATGCTTACTCTACGCCGG+CGG | 0.711544 | 4.4:-21610062 | MS.gene053618:CDS |
| CCCAGGCTAAACCACAACGG+TGG | 0.730798 | 4.4:-21610361 | MS.gene053618:CDS |
| CCAAATTGGCTGCAACACAG+AGG | 0.734243 | 4.4:-21610634 | MS.gene053618:CDS |
| AAACCCAGGCTAAACCACAA+CGG | 0.749218 | 4.4:-21610364 | MS.gene053618:CDS |
| GGGCCATGATGTTAACACTG+CGG | 0.770423 | 4.4:-21609984 | MS.gene053618:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTTGTTACTAAATTTA+GGG | + | chr4.4:21608995-21609014 | None:intergenic | 15.0% |
| !! | ATTGAGAAAGATAAAGATAT+GGG | - | chr4.4:21610453-21610472 | MS.gene053618:CDS | 20.0% |
| !!! | CTCTTTTTGTTACTAAATTT+AGG | + | chr4.4:21608996-21609015 | None:intergenic | 20.0% |
| !!! | TTGTATTCTGAAATTATCAT+GGG | - | chr4.4:21610579-21610598 | MS.gene053618:CDS | 20.0% |
| !!! | TTTGTATTCTGAAATTATCA+TGG | - | chr4.4:21610578-21610597 | MS.gene053618:CDS | 20.0% |
| ! | ATCACTCAACAGAATAAAAA+TGG | + | chr4.4:21610233-21610252 | None:intergenic | 25.0% |
| ! | CAGAATAAAAATGGACAATA+AGG | + | chr4.4:21610224-21610243 | None:intergenic | 25.0% |
| ! | GATTGAGAAAGATAAAGATA+TGG | - | chr4.4:21610452-21610471 | MS.gene053618:CDS | 25.0% |
| ! | TGATATAATTAAGCATCCTA+TGG | - | chr4.4:21609448-21609467 | MS.gene053618:CDS | 25.0% |
| !! | ATTTTCTTGTGTGCATTTAT+AGG | - | chr4.4:21610299-21610318 | MS.gene053618:CDS | 25.0% |
| !! | TGTTACTAAATTTAGGGTTA+GGG | + | chr4.4:21608989-21609008 | None:intergenic | 25.0% |
| !! | TTGTTACTAAATTTAGGGTT+AGG | + | chr4.4:21608990-21609009 | None:intergenic | 25.0% |
| !!! | AAGTTTTGATGATGAATTAC+AGG | - | chr4.4:21609667-21609686 | MS.gene053618:CDS | 25.0% |
| AAGAAATCAAAGTCAGAGAT+TGG | - | chr4.4:21609299-21609318 | MS.gene053618:intron | 30.0% | |
| AAGCTCATGAAAAACAAAAG+TGG | - | chr4.4:21609356-21609375 | MS.gene053618:intron | 30.0% | |
| AATAATGTGCCTTCAAACAA+AGG | - | chr4.4:21610184-21610203 | MS.gene053618:CDS | 30.0% | |
| ACAAACCATAAAACATTCAG+TGG | + | chr4.4:21610563-21610582 | None:intergenic | 30.0% | |
| ACATTCATTTCCCTCTTATT+TGG | + | chr4.4:21609935-21609954 | None:intergenic | 30.0% | |
| AGAAATCAAAGTCAGAGATT+GGG | - | chr4.4:21609300-21609319 | MS.gene053618:intron | 30.0% | |
| AGATCATAAGGAAGAGAAAT+GGG | - | chr4.4:21610023-21610042 | MS.gene053618:CDS | 30.0% | |
| ATAAAACATTCAGTGGAAAG+AGG | + | chr4.4:21610556-21610575 | None:intergenic | 30.0% | |
| ATTTATAGGAATTGCCTGAT+AGG | - | chr4.4:21610313-21610332 | MS.gene053618:CDS | 30.0% | |
| GTATTGTGAATGATTATCGT+TGG | + | chr4.4:21609063-21609082 | None:intergenic | 30.0% | |
| GTTGAGGAAAAACATAAGTT+GGG | - | chr4.4:21609953-21609972 | MS.gene053618:CDS | 30.0% | |
| TCATCAAATTTCTCGTGTAT+TGG | + | chr4.4:21609644-21609663 | None:intergenic | 30.0% | |
| TCATGAAAAACAAAAGTGGT+TGG | - | chr4.4:21609360-21609379 | MS.gene053618:intron | 30.0% | |
| TGTTGAGGAAAAACATAAGT+TGG | - | chr4.4:21609952-21609971 | MS.gene053618:CDS | 30.0% | |
| TTTATAGGAATTGCCTGATA+GGG | - | chr4.4:21610314-21610333 | MS.gene053618:CDS | 30.0% | |
| ! | AAAAACATAAGTTGGGACTA+GGG | - | chr4.4:21609960-21609979 | MS.gene053618:CDS | 30.0% |
| ! | TCTTTCCACTGAATGTTTTA+TGG | - | chr4.4:21610555-21610574 | MS.gene053618:CDS | 30.0% |
| ! | TTTCGATACTTTTGCAGATT+CGG | - | chr4.4:21610614-21610633 | MS.gene053618:CDS | 30.0% |
| AATTAAGCATCCTATGGATC+TGG | - | chr4.4:21609454-21609473 | MS.gene053618:CDS | 35.0% | |
| ATTAAGCATCCTATGGATCT+GGG | - | chr4.4:21609455-21609474 | MS.gene053618:CDS | 35.0% | |
| CAGATCATAAGGAAGAGAAA+TGG | - | chr4.4:21610022-21610041 | MS.gene053618:CDS | 35.0% | |
| CTTAAGACTCGAATTGAATC+AGG | - | chr4.4:21609170-21609189 | MS.gene053618:CDS | 35.0% | |
| GAAATCAAAGTCAGAGATTG+GGG | - | chr4.4:21609301-21609320 | MS.gene053618:intron | 35.0% | |
| GGTTACCAATTGGAAAAAGA+TGG | - | chr4.4:21610126-21610145 | MS.gene053618:CDS | 35.0% | |
| TAACACTCCTGTAAATGCAA+CGG | - | chr4.4:21609403-21609422 | MS.gene053618:CDS | 35.0% | |
| TAAGAGGGAAATGAATGTTG+AGG | - | chr4.4:21609937-21609956 | MS.gene053618:CDS | 35.0% | |
| TTATCTTTCTCAATCTCCAC+AGG | + | chr4.4:21610447-21610466 | None:intergenic | 35.0% | |
| ! | CTAAATTTAGGGTTAGGGTT+AGG | + | chr4.4:21608984-21609003 | None:intergenic | 35.0% |
| ! | GAAAAACATAAGTTGGGACT+AGG | - | chr4.4:21609959-21609978 | MS.gene053618:CDS | 35.0% |
| ! | GTGGTTGGATTTTTAACACT+TGG | - | chr4.4:21609375-21609394 | MS.gene053618:CDS | 35.0% |
| ! | TTGATCGATTGGTTACCAAT+TGG | - | chr4.4:21610116-21610135 | MS.gene053618:CDS | 35.0% |
| !! | ATAAAGATATGGGTGCTACT+GGG | - | chr4.4:21610463-21610482 | MS.gene053618:CDS | 35.0% |
| !! | CTGCAAAAGTATCGAAATTG+AGG | + | chr4.4:21610611-21610630 | None:intergenic | 35.0% |
| AACAGGTAGTGCAGATCATA+AGG | - | chr4.4:21610011-21610030 | MS.gene053618:CDS | 40.0% | |
| AATCAGGTGAGTTTAAACCC+AGG | - | chr4.4:21609186-21609205 | MS.gene053618:CDS | 40.0% | |
| ACAACCGTAACGAACCAAAT+TGG | - | chr4.4:21608916-21608935 | MS.gene053618:CDS | 40.0% | |
| AGATGGTGAGCAAGATTAAG+CGG | - | chr4.4:21610143-21610162 | MS.gene053618:CDS | 40.0% | |
| CATCGAATCGTACACAAAGA+CGG | - | chr4.4:21609094-21609113 | MS.gene053618:CDS | 40.0% | |
| GAAGATAGATACTGTTGACG+AGG | - | chr4.4:21610380-21610399 | MS.gene053618:CDS | 40.0% | |
| GAGTCTTAAGCTGACGAATT+TGG | + | chr4.4:21609160-21609179 | None:intergenic | 40.0% | |
| GCAGCTTCTTGAAAAATTCG+AGG | - | chr4.4:21609607-21609626 | MS.gene053618:CDS | 40.0% | |
| GCTGTCTAATGTAGCATTGT+TGG | - | chr4.4:21610256-21610275 | MS.gene053618:CDS | 40.0% | |
| GGATGAGATTGAGCTTGATA+TGG | - | chr4.4:21610063-21610082 | MS.gene053618:CDS | 40.0% | |
| TAAGAAATCAGGGAGCAAGA+AGG | - | chr4.4:21609235-21609254 | MS.gene053618:CDS | 40.0% | |
| TAAGAATGCTTACTCTACGC+CGG | - | chr4.4:21609499-21609518 | MS.gene053618:CDS | 40.0% | |
| TGAGATTGAGCTTGATATGG+AGG | - | chr4.4:21610066-21610085 | MS.gene053618:CDS | 40.0% | |
| TGCCTTCAAACAAAGGCAAT+GGG | - | chr4.4:21610191-21610210 | MS.gene053618:CDS | 40.0% | |
| TTCAAAGCCGTTGCATTTAC+AGG | + | chr4.4:21609413-21609432 | None:intergenic | 40.0% | |
| TTGCTCCCTGATTTCTTAGT+GGG | + | chr4.4:21609233-21609252 | None:intergenic | 40.0% | |
| ! | ACTTTTGCAGATTCGGATTC+AGG | - | chr4.4:21610621-21610640 | MS.gene053618:CDS | 40.0% |
| ! | CTTTTGCAGATTCGGATTCA+GGG | - | chr4.4:21610622-21610641 | MS.gene053618:CDS | 40.0% |
| ! | GATAAAGATATGGGTGCTAC+TGG | - | chr4.4:21610462-21610481 | MS.gene053618:CDS | 40.0% |
| ! | GCATTGACATACAATCCCAA+GGG | - | chr4.4:21609560-21609579 | MS.gene053618:CDS | 40.0% |
| ! | GCTCACCATCTTTTTCCAAT+TGG | + | chr4.4:21610134-21610153 | None:intergenic | 40.0% |
| ! | TGCATTGACATACAATCCCA+AGG | - | chr4.4:21609559-21609578 | MS.gene053618:CDS | 40.0% |
| !! | TAAAGATATGGGTGCTACTG+GGG | - | chr4.4:21610464-21610483 | MS.gene053618:CDS | 40.0% |
| AAACCCAGGCTAAACCACAA+CGG | - | chr4.4:21609200-21609219 | MS.gene053618:CDS | 45.0% | |
| AACTGGTGACTGAGCTAATG+GGG | + | chr4.4:21609843-21609862 | None:intergenic | 45.0% | |
| AAGGAAGAGAAATGGGCATC+TGG | - | chr4.4:21610030-21610049 | MS.gene053618:CDS | 45.0% | |
| AATTCCTTCACCGCAGGAAA+AGG | + | chr4.4:21609278-21609297 | None:intergenic | 45.0% | |
| ACTACCTGTTCCATCTTCTC+TGG | + | chr4.4:21610001-21610020 | None:intergenic | 45.0% | |
| AGAGGTTATACCACTAGACG+AGG | + | chr4.4:21610538-21610557 | None:intergenic | 45.0% | |
| AGTGTTAACATCATGGCCCT+TGG | + | chr4.4:21609579-21609598 | None:intergenic | 45.0% | |
| ATGTTGAACCAGAGAGGGAA+AGG | - | chr4.4:21609705-21609724 | MS.gene053618:CDS | 45.0% | |
| CTTGCTCCCTGATTTCTTAG+TGG | + | chr4.4:21609234-21609253 | None:intergenic | 45.0% | |
| CTTTCTCAATCTCCACAGGT+GGG | + | chr4.4:21610443-21610462 | None:intergenic | 45.0% | |
| GAACCATGTTGAACCAGAGA+GGG | - | chr4.4:21609700-21609719 | MS.gene053618:CDS | 45.0% | |
| GAACTGGTGACTGAGCTAAT+GGG | + | chr4.4:21609844-21609863 | None:intergenic | 45.0% | |
| GCCTTCAAACAAAGGCAATG+GGG | - | chr4.4:21610192-21610211 | MS.gene053618:CDS | 45.0% | |
| GTGCCTTCAAACAAAGGCAA+TGG | - | chr4.4:21610190-21610209 | MS.gene053618:CDS | 45.0% | |
| GTGGTCCCACTAAGAAATCA+GGG | - | chr4.4:21609225-21609244 | MS.gene053618:CDS | 45.0% | |
| GTGTTAACATCATGGCCCTT+GGG | + | chr4.4:21609578-21609597 | None:intergenic | 45.0% | |
| GTTGACGAGGATGTTGACAT+TGG | - | chr4.4:21610393-21610412 | MS.gene053618:CDS | 45.0% | |
| TCTTTCTCAATCTCCACAGG+TGG | + | chr4.4:21610444-21610463 | None:intergenic | 45.0% | |
| TGTTGAACCAGAGAGGGAAA+GGG | - | chr4.4:21609706-21609725 | MS.gene053618:CDS | 45.0% | |
| TGTTGACACAGAGACTCTCT+GGG | - | chr4.4:21610090-21610109 | MS.gene053618:CDS | 45.0% | |
| TTCTTCAATTCCTTCACCGC+AGG | + | chr4.4:21609284-21609303 | None:intergenic | 45.0% | |
| TTGACAGTACCCAGATCCAT+AGG | + | chr4.4:21609467-21609486 | None:intergenic | 45.0% | |
| ! | ACCCCATTGCCTTTGTTTGA+AGG | + | chr4.4:21610196-21610215 | None:intergenic | 45.0% |
| ! | AGGAAAAGGTCGTTTGTTGC+CGG | + | chr4.4:21609264-21609283 | None:intergenic | 45.0% |
| ! | ATGAATTACAGGCTAGCTCG+TGG | - | chr4.4:21609678-21609697 | MS.gene053618:CDS | 45.0% |
| ! | CAACAAACGACCTTTTCCTG+CGG | - | chr4.4:21609265-21609284 | MS.gene053618:intron | 45.0% |
| ! | GATTTTGCCACCAGAGAAGA+TGG | - | chr4.4:21609988-21610007 | MS.gene053618:CDS | 45.0% |
| ! | GCAGCCAATTTGGTTCGTTA+CGG | + | chr4.4:21608923-21608942 | None:intergenic | 45.0% |
| ! | GTTGGATCGTCGATTGATTG+AGG | + | chr4.4:21609045-21609064 | None:intergenic | 45.0% |
| ! | TCTCTGGGAACTTGATCGAT+TGG | - | chr4.4:21610105-21610124 | MS.gene053618:CDS | 45.0% |
| ! | TTATTTGGATCCCTGGCCTT+TGG | + | chr4.4:21609920-21609939 | None:intergenic | 45.0% |
| ! | TTCAGGAAGTGACTCTGAAG+CGG | - | chr4.4:21610650-21610669 | MS.gene053618:CDS | 45.0% |
| ! | TTCCCTCTTATTTGGATCCC+TGG | + | chr4.4:21609927-21609946 | None:intergenic | 45.0% |
| ! | TTTCCCTCTCTGGTTCAACA+TGG | + | chr4.4:21609706-21609725 | None:intergenic | 45.0% |
| !! | AAAGATATGGGTGCTACTGG+GGG | - | chr4.4:21610465-21610484 | MS.gene053618:CDS | 45.0% |
| !! | ATTGAGGAAGCGTCATCTGA+TGG | + | chr4.4:21609029-21609048 | None:intergenic | 45.0% |
| !! | TTAGAAGTACTAGCAGGCTC+AGG | + | chr4.4:21609800-21609819 | None:intergenic | 45.0% |
| !! | TTGAGGAAGCGTCATCTGAT+GGG | + | chr4.4:21609028-21609047 | None:intergenic | 45.0% |
| AATTGGCTGCAACACAGAGG+CGG | - | chr4.4:21608933-21608952 | MS.gene053618:CDS | 50.0% | |
| ACAGGTGGGAAGTTGTTTGC+AGG | + | chr4.4:21610429-21610448 | None:intergenic | 50.0% | |
| ACATCAGCAGCAAAATCCGC+CGG | + | chr4.4:21609521-21609540 | None:intergenic | 50.0% | |
| ACCTGTTCCATCTTCTCTGG+TGG | + | chr4.4:21609998-21610017 | None:intergenic | 50.0% | |
| ACTGGTGACTGAGCTAATGG+GGG | + | chr4.4:21609842-21609861 | None:intergenic | 50.0% | |
| AGAGATTGGGGATGCGATGA+AGG | - | chr4.4:21609313-21609332 | MS.gene053618:intron | 50.0% | |
| AGGCCAGGGATCCAAATAAG+AGG | - | chr4.4:21609921-21609940 | MS.gene053618:CDS | 50.0% | |
| CCAAATTGGCTGCAACACAG+AGG | - | chr4.4:21608930-21608949 | MS.gene053618:CDS | 50.0% | |
| CCTCTGTGTTGCAGCCAATT+TGG | + | chr4.4:21608933-21608952 | None:intergenic | 50.0% | |
| CGAACTGGTGACTGAGCTAA+TGG | + | chr4.4:21609845-21609864 | None:intergenic | 50.0% | |
| CTGTTGACACAGAGACTCTC+TGG | - | chr4.4:21610089-21610108 | MS.gene053618:CDS | 50.0% | |
| GATTAAGCGGCAGGCACTAA+TGG | - | chr4.4:21610156-21610175 | MS.gene053618:CDS | 50.0% | |
| GCATCAACCTTCTCCCTATC+AGG | + | chr4.4:21610330-21610349 | None:intergenic | 50.0% | |
| GGAACCATGTTGAACCAGAG+AGG | - | chr4.4:21609699-21609718 | MS.gene053618:CDS | 50.0% | |
| GGAATCACTACCAGAACTGC+TGG | + | chr4.4:21610517-21610536 | None:intergenic | 50.0% | |
| GGAATTGCCTGATAGGGAGA+AGG | - | chr4.4:21610320-21610339 | MS.gene053618:CDS | 50.0% | |
| GGCCAGGGATCCAAATAAGA+GGG | - | chr4.4:21609922-21609941 | MS.gene053618:CDS | 50.0% | |
| GGGCCATGATGTTAACACTG+CGG | - | chr4.4:21609580-21609599 | MS.gene053618:CDS | 50.0% | |
| GGTAGTGATTCCTCGTCTAG+TGG | - | chr4.4:21610525-21610544 | MS.gene053618:CDS | 50.0% | |
| GGTGGTCCCACTAAGAAATC+AGG | - | chr4.4:21609224-21609243 | MS.gene053618:CDS | 50.0% | |
| TCAGGGAGCAAGAAGGTTTC+CGG | - | chr4.4:21609242-21609261 | MS.gene053618:CDS | 50.0% | |
| TCCAATTCCAATCCCTCCAC+CGG | - | chr4.4:21609751-21609770 | MS.gene053618:CDS | 50.0% | |
| TCGCCGCAGTGTTAACATCA+TGG | + | chr4.4:21609586-21609605 | None:intergenic | 50.0% | |
| TCGGATTCAGGGAGTTCTTC+AGG | - | chr4.4:21610633-21610652 | MS.gene053618:CDS | 50.0% | |
| TGCAAACAACTTCCCACCTG+TGG | - | chr4.4:21610428-21610447 | MS.gene053618:CDS | 50.0% | |
| TTCTGCTTCTTCCCCTCAGA+AGG | + | chr4.4:21610360-21610379 | None:intergenic | 50.0% | |
| ! | AATGGGCATCTGGAGCAAGA+TGG | - | chr4.4:21610040-21610059 | MS.gene053618:CDS | 50.0% |
| ! | AATGGGGGATTCGAAGTGCT+TGG | + | chr4.4:21609827-21609846 | None:intergenic | 50.0% |
| ! | ATGGGCATCTGGAGCAAGAT+GGG | - | chr4.4:21610041-21610060 | MS.gene053618:CDS | 50.0% |
| !! | GGCTGGTTAGAAGTACTAGC+AGG | + | chr4.4:21609806-21609825 | None:intergenic | 50.0% |
| !! | TCAGGAAGTGACTCTGAAGC+GGG | - | chr4.4:21610651-21610670 | MS.gene053618:CDS | 50.0% |
| !! | TGAGGAAGCGTCATCTGATG+GGG | + | chr4.4:21609027-21609046 | None:intergenic | 50.0% |
| !! | TTTGGCTTGGGCTGCTTCAA+GGG | + | chr4.4:21609902-21609921 | None:intergenic | 50.0% |
| AACCAGAGAGGGAAAGGGAG+AGG | - | chr4.4:21609711-21609730 | MS.gene053618:CDS | 55.0% | |
| ACCACCGTTGTGGTTTAGCC+TGG | + | chr4.4:21609207-21609226 | None:intergenic | 55.0% | |
| ACCAGAGAGGGAAAGGGAGA+GGG | - | chr4.4:21609712-21609731 | MS.gene053618:CDS | 55.0% | |
| ACCGGTGGAGGGATTGGAAT+TGG | + | chr4.4:21609755-21609774 | None:intergenic | 55.0% | |
| AGGCGGTGGAGCTGAATTCA+TGG | - | chr4.4:21608950-21608969 | MS.gene053618:intron | 55.0% | |
| AGGCTAAACCACAACGGTGG+TGG | - | chr4.4:21609206-21609225 | MS.gene053618:CDS | 55.0% | |
| ATGCAACCCCTCCTTCTGAG+GGG | - | chr4.4:21610346-21610365 | MS.gene053618:CDS | 55.0% | |
| CCACCGTTGTGGTTTAGCCT+GGG | + | chr4.4:21609206-21609225 | None:intergenic | 55.0% | |
| CTTCTTCCCCTCAGAAGGAG+GGG | + | chr4.4:21610355-21610374 | None:intergenic | 55.0% | |
| CTTGAAGCAGCCCAAGCCAA+AGG | - | chr4.4:21609901-21609920 | MS.gene053618:CDS | 55.0% | |
| GAATGCTTACTCTACGCCGG+CGG | - | chr4.4:21609502-21609521 | MS.gene053618:CDS | 55.0% | |
| GATGCAACCCCTCCTTCTGA+GGG | - | chr4.4:21610345-21610364 | MS.gene053618:CDS | 55.0% | |
| GCCACCAGAGAAGATGGAAC+AGG | - | chr4.4:21609994-21610013 | MS.gene053618:CDS | 55.0% | |
| GCTTCTTCCCCTCAGAAGGA+GGG | + | chr4.4:21610356-21610375 | None:intergenic | 55.0% | |
| GGAGCCACTGGAACTACTAC+TGG | + | chr4.4:21610496-21610515 | None:intergenic | 55.0% | |
| GGCGGTGGAGCTGAATTCAT+GGG | - | chr4.4:21608951-21608970 | MS.gene053618:intron | 55.0% | |
| GGTGAGCAAGATTAAGCGGC+AGG | - | chr4.4:21610147-21610166 | MS.gene053618:CDS | 55.0% | |
| GGTGCCAGTAGTAGTTCCAG+TGG | - | chr4.4:21610489-21610508 | MS.gene053618:CDS | 55.0% | |
| TGATGCAACCCCTCCTTCTG+AGG | - | chr4.4:21610344-21610363 | MS.gene053618:CDS | 55.0% | |
| TGCTTCTTCCCCTCAGAAGG+AGG | + | chr4.4:21610357-21610376 | None:intergenic | 55.0% | |
| TTTGCTACCGGTGGAGGGAT+TGG | + | chr4.4:21609761-21609780 | None:intergenic | 55.0% | |
| ! | ACGACCTTTTCCTGCGGTGA+AGG | - | chr4.4:21609271-21609290 | MS.gene053618:intron | 55.0% |
| ! | GGCTCTTGGCGTTTTGCTAC+CGG | + | chr4.4:21609773-21609792 | None:intergenic | 55.0% |
| ! | TCTTGGCGTTTTGCTACCGG+TGG | + | chr4.4:21609770-21609789 | None:intergenic | 55.0% |
| ! | TGGGCATCTGGAGCAAGATG+GGG | - | chr4.4:21610042-21610061 | MS.gene053618:CDS | 55.0% |
| !! | AGTGACTCTGAAGCGGGCAA+TGG | - | chr4.4:21610657-21610676 | MS.gene053618:CDS | 55.0% |
| !! | CTTTGGCTTGGGCTGCTTCA+AGG | + | chr4.4:21609903-21609922 | None:intergenic | 55.0% |
| !! | TCACTGGAAGTGCTCGCGTT+GGG | + | chr4.4:21609877-21609896 | None:intergenic | 55.0% |
| !! | TTCACTGGAAGTGCTCGCGT+TGG | + | chr4.4:21609878-21609897 | None:intergenic | 55.0% |
| ACCAGAACTGCTGGAGCCAC+TGG | + | chr4.4:21610508-21610527 | None:intergenic | 60.0% | |
| ACCCTCTCCCTTTCCCTCTC+TGG | + | chr4.4:21609716-21609735 | None:intergenic | 60.0% | |
| CCCAGGCTAAACCACAACGG+TGG | - | chr4.4:21609203-21609222 | MS.gene053618:CDS | 60.0% | |
| GGCTGCTTCAAGGGCTTCAC+TGG | + | chr4.4:21609893-21609912 | None:intergenic | 60.0% | |
| GGGGATGCGATGAAGGCTTG+TGG | - | chr4.4:21609320-21609339 | MS.gene053618:intron | 60.0% | |
| GTACTAGCAGGCTCAGGCAG+TGG | + | chr4.4:21609794-21609813 | None:intergenic | 60.0% | |
| TAGTGGGACCACCACCGTTG+TGG | + | chr4.4:21609217-21609236 | None:intergenic | 60.0% | |
| TCCAGTGGCTCCAGCAGTTC+TGG | - | chr4.4:21610504-21610523 | MS.gene053618:CDS | 60.0% | |
| ! | GGATCCCTGGCCTTTGGCTT+GGG | + | chr4.4:21609914-21609933 | None:intergenic | 60.0% |
| ! | GGCGTTTTGCTACCGGTGGA+GGG | + | chr4.4:21609766-21609785 | None:intergenic | 60.0% |
| ! | GGGGATTCGAAGTGCTTGGC+TGG | + | chr4.4:21609823-21609842 | None:intergenic | 60.0% |
| ! | GTTGGGGAGGGTATGCGAAC+TGG | + | chr4.4:21609860-21609879 | None:intergenic | 60.0% |
| ! | TGGATCCCTGGCCTTTGGCT+TGG | + | chr4.4:21609915-21609934 | None:intergenic | 60.0% |
| ! | TGGCGTTTTGCTACCGGTGG+AGG | + | chr4.4:21609767-21609786 | None:intergenic | 60.0% |
| !! | CACTGGAAGTGCTCGCGTTG+GGG | + | chr4.4:21609876-21609895 | None:intergenic | 60.0% |
| !! | GATATGGGTGCTACTGGGGG+TGG | - | chr4.4:21610468-21610487 | MS.gene053618:CDS | 60.0% |
| AGCAGCCCAAGCCAAAGGCC+AGG | - | chr4.4:21609906-21609925 | MS.gene053618:CDS | 65.0% | |
| CAGGCTCAGGCAGTGGCTCT+TGG | + | chr4.4:21609787-21609806 | None:intergenic | 65.0% | |
| GCAGCCCAAGCCAAAGGCCA+GGG | - | chr4.4:21609907-21609926 | MS.gene053618:CDS | 65.0% | |
| TGGCTGCAACACAGAGGCGG+TGG | - | chr4.4:21608936-21608955 | MS.gene053618:CDS | 65.0% | |
| !! | GGAAGTGCTCGCGTTGGGGA+GGG | + | chr4.4:21609872-21609891 | None:intergenic | 65.0% |
| !! | TGGAAGTGCTCGCGTTGGGG+AGG | + | chr4.4:21609873-21609892 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 21608897 | 21610689 | 21608897 | ID=MS.gene053618 |
| chr4.4 | mRNA | 21608897 | 21610689 | 21608897 | ID=MS.gene053618.t1;Parent=MS.gene053618 |
| chr4.4 | exon | 21609373 | 21610689 | 21609373 | ID=MS.gene053618.t1.exon1;Parent=MS.gene053618.t1 |
| chr4.4 | CDS | 21609373 | 21610689 | 21609373 | ID=cds.MS.gene053618.t1;Parent=MS.gene053618.t1 |
| chr4.4 | exon | 21609040 | 21609265 | 21609040 | ID=MS.gene053618.t1.exon2;Parent=MS.gene053618.t1 |
| chr4.4 | CDS | 21609040 | 21609265 | 21609040 | ID=cds.MS.gene053618.t1;Parent=MS.gene053618.t1 |
| chr4.4 | exon | 21608897 | 21608955 | 21608897 | ID=MS.gene053618.t1.exon3;Parent=MS.gene053618.t1 |
| chr4.4 | CDS | 21608897 | 21608955 | 21608897 | ID=cds.MS.gene053618.t1;Parent=MS.gene053618.t1 |
| Gene Sequence |
| Protein sequence |
