Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40093.t1 | KEH31196.1 | 94 | 484 | 29 | 0 | 1 | 484 | 1 | 484 | 4.10E-222 | 780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40093.t1 | Q7Y214 | 42.8 | 544 | 236 | 10 | 1 | 484 | 1 | 529 | 5.4e-74 | 280.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40093.t1 | A0A072UP94 | 94.0 | 484 | 29 | 0 | 1 | 484 | 1 | 484 | 2.9e-222 | 780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene40093 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene40093 | 0.852897 | 3.41E-61 | -1.69E-46 |
| MS.gene049499 | MS.gene40093 | 0.810632 | 1.05E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene40093 | 0.812397 | 4.33E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene40093 | 0.824184 | 9.26E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene40093 | 0.817183 | 3.76E-52 | -1.69E-46 |
| MS.gene04998 | MS.gene40093 | 0.824977 | 6.02E-54 | -1.69E-46 |
| MS.gene050224 | MS.gene40093 | 0.802378 | 5.77E-49 | -1.69E-46 |
| MS.gene050257 | MS.gene40093 | 0.81356 | 2.41E-51 | -1.69E-46 |
| MS.gene050258 | MS.gene40093 | 0.802078 | 6.66E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene40093 | 0.840428 | 8.75E-58 | -1.69E-46 |
| MS.gene05035 | MS.gene40093 | 0.804839 | 1.78E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene40093 | 0.889115 | 3.23E-73 | -1.69E-46 |
| MS.gene050551 | MS.gene40093 | 0.818937 | 1.51E-52 | -1.69E-46 |
| MS.gene050556 | MS.gene40093 | 0.814913 | 1.21E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene40093 | 0.84455 | 7.05E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene40093 | 0.847932 | 8.46E-60 | -1.69E-46 |
| MS.gene050945 | MS.gene40093 | 0.81937 | 1.20E-52 | -1.69E-46 |
| MS.gene051043 | MS.gene40093 | 0.81788 | 2.62E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene40093 | 0.813872 | 2.05E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene40093 | 0.835949 | 1.25E-56 | -1.69E-46 |
| MS.gene051343 | MS.gene40093 | 0.812024 | 5.22E-51 | -1.69E-46 |
| MS.gene051628 | MS.gene40093 | 0.805501 | 1.30E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene40093 | 0.800701 | 1.27E-48 | -1.69E-46 |
| MS.gene051800 | MS.gene40093 | 0.802139 | 6.47E-49 | -1.69E-46 |
| MS.gene051819 | MS.gene40093 | 0.823857 | 1.10E-53 | -1.69E-46 |
| MS.gene051852 | MS.gene40093 | 0.832415 | 9.58E-56 | -1.69E-46 |
| MS.gene052016 | MS.gene40093 | 0.872636 | 2.73E-67 | -1.69E-46 |
| MS.gene052037 | MS.gene40093 | 0.821404 | 4.11E-53 | -1.69E-46 |
| MS.gene052052 | MS.gene40093 | 0.802645 | 5.08E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene40093 | 0.805896 | 1.07E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene40093 | -0.817398 | 3.37E-52 | -1.69E-46 |
| MS.gene052242 | MS.gene40093 | -0.82437 | 8.37E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene40093 | 0.870744 | 1.16E-66 | -1.69E-46 |
| MS.gene052463 | MS.gene40093 | 0.851136 | 1.08E-60 | -1.69E-46 |
| MS.gene052493 | MS.gene40093 | 0.818438 | 1.96E-52 | -1.69E-46 |
| MS.gene052514 | MS.gene40093 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene40093 | 0.825593 | 4.31E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene40093 | 0.867651 | 1.17E-65 | -1.69E-46 |
| MS.gene052675 | MS.gene40093 | 0.801667 | 8.08E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene40093 | 0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene052681 | MS.gene40093 | 0.801818 | 7.53E-49 | -1.69E-46 |
| MS.gene052775 | MS.gene40093 | 0.831763 | 1.39E-55 | -1.69E-46 |
| MS.gene052776 | MS.gene40093 | 0.85156 | 8.19E-61 | -1.69E-46 |
| MS.gene052932 | MS.gene40093 | 0.827932 | 1.19E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene40093 | 0.861865 | 7.60E-64 | -1.69E-46 |
| MS.gene053143 | MS.gene40093 | 0.850137 | 2.06E-60 | -1.69E-46 |
| MS.gene053171 | MS.gene40093 | 0.804801 | 1.81E-49 | -1.69E-46 |
| MS.gene053486 | MS.gene40093 | 0.815711 | 8.04E-52 | -1.69E-46 |
| MS.gene05350 | MS.gene40093 | 0.809895 | 1.51E-50 | -1.69E-46 |
| MS.gene053575 | MS.gene40093 | 0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene053618 | MS.gene40093 | 0.864237 | 1.41E-64 | -1.69E-46 |
| MS.gene053620 | MS.gene40093 | 0.919244 | 5.74E-87 | -1.69E-46 |
| MS.gene053726 | MS.gene40093 | 0.803687 | 3.09E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene40093 | 0.856773 | 2.56E-62 | -1.69E-46 |
| MS.gene054222 | MS.gene40093 | 0.811389 | 7.18E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene40093 | 0.828038 | 1.12E-54 | -1.69E-46 |
| MS.gene054641 | MS.gene40093 | 0.836883 | 7.21E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene40093 | 0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene054824 | MS.gene40093 | 0.84814 | 7.41E-60 | -1.69E-46 |
| MS.gene054892 | MS.gene40093 | 0.880179 | 6.79E-70 | -1.69E-46 |
| MS.gene054893 | MS.gene40093 | 0.881032 | 3.36E-70 | -1.69E-46 |
| MS.gene055229 | MS.gene40093 | 0.820288 | 7.42E-53 | -1.69E-46 |
| MS.gene055231 | MS.gene40093 | 0.812218 | 4.74E-51 | -1.69E-46 |
| MS.gene055386 | MS.gene40093 | 0.81484 | 1.26E-51 | -1.69E-46 |
| MS.gene05539 | MS.gene40093 | 0.82803 | 1.13E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene40093 | 0.816125 | 6.50E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene40093 | 0.854204 | 1.44E-61 | -1.69E-46 |
| MS.gene05552 | MS.gene40093 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene055724 | MS.gene40093 | 0.81013 | 1.34E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene40093 | 0.842761 | 2.12E-58 | -1.69E-46 |
| MS.gene056045 | MS.gene40093 | 0.834388 | 3.09E-56 | -1.69E-46 |
| MS.gene056097 | MS.gene40093 | 0.811369 | 7.25E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene40093 | 0.817421 | 3.33E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene40093 | 0.819248 | 1.28E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene40093 | 0.856137 | 3.94E-62 | -1.69E-46 |
| MS.gene056509 | MS.gene40093 | 0.811469 | 6.89E-51 | -1.69E-46 |
| MS.gene056519 | MS.gene40093 | 0.81274 | 3.64E-51 | -1.69E-46 |
| MS.gene056677 | MS.gene40093 | 0.828212 | 1.02E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene40093 | 0.813287 | 2.76E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene40093 | 0.819576 | 1.08E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene40093 | 0.815246 | 1.02E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene40093 | 0.836574 | 8.64E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene40093 | 0.813581 | 2.38E-51 | -1.69E-46 |
| MS.gene057174 | MS.gene40093 | 0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene057371 | MS.gene40093 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene057919 | MS.gene40093 | 0.853173 | 2.85E-61 | -1.69E-46 |
| MS.gene058010 | MS.gene40093 | 0.803393 | 3.56E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene40093 | 0.860055 | 2.70E-63 | -1.69E-46 |
| MS.gene058330 | MS.gene40093 | 0.822501 | 2.29E-53 | -1.69E-46 |
| MS.gene058638 | MS.gene40093 | 0.83209 | 1.15E-55 | -1.69E-46 |
| MS.gene058639 | MS.gene40093 | 0.831369 | 1.74E-55 | -1.69E-46 |
| MS.gene058649 | MS.gene40093 | 0.852607 | 4.13E-61 | -1.69E-46 |
| MS.gene058758 | MS.gene40093 | 0.812857 | 3.43E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene40093 | 0.835265 | 1.86E-56 | -1.69E-46 |
| MS.gene059170 | MS.gene40093 | 0.833265 | 5.89E-56 | -1.69E-46 |
| MS.gene059439 | MS.gene40093 | 0.815458 | 9.15E-52 | -1.69E-46 |
| MS.gene059634 | MS.gene40093 | 0.808138 | 3.59E-50 | -1.69E-46 |
| MS.gene059774 | MS.gene40093 | 0.814951 | 1.19E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene40093 | -0.801571 | 8.45E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene40093 | 0.8639 | 1.79E-64 | -1.69E-46 |
| MS.gene060259 | MS.gene40093 | 0.804819 | 1.80E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene40093 | 0.817225 | 3.68E-52 | -1.69E-46 |
| MS.gene060380 | MS.gene40093 | 0.813473 | 2.51E-51 | -1.69E-46 |
| MS.gene060400 | MS.gene40093 | 0.816282 | 5.99E-52 | -1.69E-46 |
| MS.gene060413 | MS.gene40093 | 0.805586 | 1.24E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene40093 | 0.81185 | 5.70E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene40093 | 0.812352 | 4.43E-51 | -1.69E-46 |
| MS.gene060697 | MS.gene40093 | 0.814721 | 1.33E-51 | -1.69E-46 |
| MS.gene060777 | MS.gene40093 | 0.816809 | 4.57E-52 | -1.69E-46 |
| MS.gene060785 | MS.gene40093 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene40093 | 0.815107 | 1.10E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene40093 | 0.84465 | 6.63E-59 | -1.69E-46 |
| MS.gene060933 | MS.gene40093 | 0.85029 | 1.87E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene40093 | 0.811512 | 6.75E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene40093 | 0.834145 | 3.55E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene40093 | 0.850786 | 1.36E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40093 | MS.gene73119 | PPI |
| MS.gene40093 | MS.gene97346 | PPI |
| MS.gene40093 | MS.gene029093 | PPI |
| MS.gene40093 | MS.gene019660 | PPI |
| MS.gene40093 | MS.gene23912 | PPI |
| MS.gene40093 | MS.gene066439 | PPI |
| MS.gene40093 | MS.gene93135 | PPI |
| MS.gene40093 | MS.gene056804 | PPI |
| MS.gene40093 | MS.gene064542 | PPI |
| MS.gene40093 | MS.gene037356 | PPI |
| MS.gene40093 | MS.gene029217 | PPI |
| MS.gene40093 | MS.gene035805 | PPI |
| MS.gene40093 | MS.gene84252 | PPI |
| MS.gene40093 | MS.gene029219 | PPI |
| MS.gene40093 | MS.gene90825 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40093.t1 | MTR_4g092900 | 96.060 | 533 | 21 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1044 |
| MS.gene40093.t1 | MTR_4g092900 | 95.943 | 493 | 20 | 0 | 1 | 493 | 1 | 493 | 0.0 | 972 |
| MS.gene40093.t1 | MTR_4g092880 | 82.841 | 542 | 52 | 7 | 1 | 533 | 1 | 510 | 0.0 | 824 |
| MS.gene40093.t1 | MTR_4g092880 | 83.422 | 374 | 46 | 5 | 1 | 366 | 1 | 366 | 0.0 | 617 |
| MS.gene40093.t1 | MTR_2g091130 | 45.763 | 295 | 132 | 6 | 131 | 425 | 283 | 549 | 4.34e-69 | 234 |
| MS.gene40093.t1 | MTR_2g091135 | 43.878 | 294 | 119 | 8 | 141 | 425 | 304 | 560 | 5.12e-64 | 220 |
| MS.gene40093.t1 | MTR_2g091135 | 43.878 | 294 | 119 | 8 | 141 | 425 | 304 | 560 | 6.96e-64 | 220 |
| MS.gene40093.t1 | MTR_4g079650 | 40.278 | 288 | 101 | 9 | 145 | 425 | 656 | 879 | 5.04e-50 | 185 |
| MS.gene40093.t1 | MTR_4g079650 | 40.278 | 288 | 101 | 9 | 145 | 425 | 656 | 879 | 5.08e-50 | 185 |
| MS.gene40093.t1 | MTR_4g079650 | 42.041 | 245 | 98 | 8 | 145 | 382 | 656 | 863 | 6.05e-46 | 172 |
| MS.gene40093.t1 | MTR_3g075040 | 27.629 | 485 | 228 | 15 | 51 | 487 | 79 | 488 | 5.65e-41 | 156 |
| MS.gene40093.t1 | MTR_3g075040 | 27.629 | 485 | 228 | 15 | 51 | 487 | 79 | 488 | 1.58e-40 | 156 |
| MS.gene40093.t1 | MTR_2g018270 | 40.571 | 175 | 91 | 5 | 95 | 266 | 29 | 193 | 1.20e-26 | 114 |
| MS.gene40093.t1 | MTR_6g033375 | 26.667 | 375 | 213 | 10 | 97 | 460 | 13 | 336 | 6.70e-26 | 108 |
| MS.gene40093.t1 | MTR_8g070660 | 36.184 | 152 | 88 | 5 | 98 | 245 | 46 | 192 | 8.82e-21 | 92.8 |
| MS.gene40093.t1 | MTR_8g070660 | 36.184 | 152 | 88 | 5 | 98 | 245 | 46 | 192 | 1.54e-20 | 94.0 |
| MS.gene40093.t1 | MTR_5g069490 | 25.581 | 258 | 133 | 7 | 159 | 413 | 111 | 312 | 1.05e-15 | 79.0 |
| MS.gene40093.t1 | MTR_2g437920 | 44.444 | 81 | 42 | 2 | 167 | 244 | 149 | 229 | 3.97e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40093.t1 | AT1G73150 | 38.287 | 397 | 208 | 9 | 37 | 429 | 23 | 386 | 3.73e-63 | 213 |
| MS.gene40093.t1 | AT1G73150 | 38.287 | 397 | 208 | 9 | 37 | 429 | 23 | 386 | 4.01e-63 | 214 |
| MS.gene40093.t1 | AT1G17790 | 37.995 | 379 | 194 | 10 | 55 | 420 | 49 | 399 | 2.48e-59 | 204 |
| MS.gene40093.t1 | AT1G06230 | 42.647 | 272 | 133 | 6 | 144 | 414 | 421 | 670 | 7.51e-54 | 194 |
| MS.gene40093.t1 | AT1G06230 | 42.647 | 272 | 133 | 6 | 144 | 414 | 421 | 670 | 7.51e-54 | 194 |
| MS.gene40093.t1 | AT1G06230 | 42.647 | 272 | 133 | 6 | 144 | 414 | 421 | 670 | 7.51e-54 | 194 |
| MS.gene40093.t1 | AT1G06230 | 42.647 | 272 | 133 | 6 | 144 | 414 | 421 | 670 | 7.51e-54 | 194 |
| MS.gene40093.t1 | AT5G65630 | 60.265 | 151 | 52 | 1 | 337 | 487 | 390 | 532 | 2.06e-48 | 177 |
| MS.gene40093.t1 | AT5G10550 | 56.000 | 150 | 59 | 2 | 337 | 486 | 385 | 527 | 1.10e-42 | 160 |
| MS.gene40093.t1 | AT5G14270 | 30.317 | 442 | 219 | 14 | 77 | 503 | 64 | 431 | 1.02e-39 | 154 |
| MS.gene40093.t1 | AT5G14270 | 30.317 | 442 | 219 | 14 | 77 | 503 | 64 | 431 | 1.02e-39 | 154 |
| MS.gene40093.t1 | AT5G14270 | 30.317 | 442 | 219 | 14 | 77 | 503 | 64 | 431 | 1.08e-39 | 153 |
| MS.gene40093.t1 | AT5G63320 | 29.425 | 452 | 221 | 17 | 64 | 487 | 60 | 441 | 1.08e-38 | 148 |
| MS.gene40093.t1 | AT5G63320 | 29.425 | 452 | 221 | 17 | 64 | 487 | 60 | 441 | 1.08e-38 | 148 |
| MS.gene40093.t1 | AT5G63320 | 29.425 | 452 | 221 | 17 | 64 | 487 | 60 | 441 | 3.79e-37 | 147 |
| MS.gene40093.t1 | AT3G27260 | 31.522 | 368 | 176 | 13 | 104 | 469 | 142 | 435 | 1.44e-33 | 135 |
| MS.gene40093.t1 | AT3G27260 | 31.522 | 368 | 176 | 13 | 104 | 469 | 142 | 435 | 1.85e-33 | 135 |
| MS.gene40093.t1 | AT3G27260 | 31.522 | 368 | 176 | 13 | 104 | 469 | 142 | 435 | 2.06e-33 | 135 |
| MS.gene40093.t1 | AT3G27260 | 31.522 | 368 | 176 | 13 | 104 | 469 | 93 | 386 | 2.19e-33 | 135 |
| MS.gene40093.t1 | AT3G01770 | 30.588 | 425 | 206 | 15 | 82 | 492 | 60 | 409 | 1.47e-32 | 130 |
| MS.gene40093.t1 | AT3G01770 | 32.386 | 352 | 162 | 12 | 145 | 492 | 130 | 409 | 1.01e-31 | 129 |
| MS.gene40093.t1 | AT5G46550 | 40.741 | 135 | 67 | 2 | 148 | 282 | 73 | 194 | 3.59e-24 | 106 |
| MS.gene40093.t1 | AT3G52280 | 26.642 | 274 | 150 | 6 | 143 | 411 | 93 | 320 | 1.01e-23 | 103 |
| MS.gene40093.t1 | AT3G52280 | 26.642 | 274 | 150 | 6 | 143 | 411 | 110 | 337 | 1.28e-23 | 103 |
| MS.gene40093.t1 | AT2G34900 | 26.852 | 324 | 184 | 7 | 143 | 460 | 109 | 385 | 7.91e-23 | 100 |
| MS.gene40093.t1 | AT2G34900 | 27.575 | 301 | 170 | 5 | 166 | 460 | 17 | 275 | 1.74e-22 | 97.8 |
| MS.gene40093.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.61e-11 | 65.9 |
| MS.gene40093.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.61e-11 | 65.9 |
| MS.gene40093.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.82e-11 | 65.9 |
| MS.gene40093.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.82e-11 | 65.9 |
| MS.gene40093.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 4.82e-11 | 65.9 |
| MS.gene40093.t1 | AT1G58025 | 36.036 | 111 | 61 | 3 | 134 | 243 | 209 | 310 | 5.14e-11 | 65.9 |
Find 159 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCATTTCCCTCTTATT+TGG | 0.124253 | 4.3:+21318755 | None:intergenic |
| CTTTGGCTTGGGCTGCTTCA+AGG | 0.184318 | 4.3:+21318787 | None:intergenic |
| CTTCATGCAGATTCGGATTC+AGG | 0.197155 | 4.3:-21318069 | MS.gene40093:intron |
| TTCAAAGCCGTTGCATTTAC+AGG | 0.229221 | 4.3:+21319277 | None:intergenic |
| CCTCTGTGTTGCAGCCAATT+TGG | 0.258953 | 4.3:+21319757 | None:intergenic |
| TCCAGTGGTTCCAGCAGCTC+TGG | 0.278947 | 4.3:-21318184 | MS.gene40093:CDS |
| ACCCTCTCCCTTTCCCTCTC+TGG | 0.292850 | 4.3:+21318974 | None:intergenic |
| TTGTTACTAAATTTAGGGTT+AGG | 0.292960 | 4.3:+21319700 | None:intergenic |
| TCAGGGAGCAAGAAGGTTTC+CGG | 0.305508 | 4.3:-21319445 | MS.gene40093:CDS |
| GAGTCTTAAGCTGACGAATT+TGG | 0.320746 | 4.3:+21319530 | None:intergenic |
| GGATCCCTGGCCTTTGGCTT+GGG | 0.322222 | 4.3:+21318776 | None:intergenic |
| TTCCCTCTTATTTGGATCCC+TGG | 0.326630 | 4.3:+21318763 | None:intergenic |
| TGGATCCCTGGCCTTTGGCT+TGG | 0.328127 | 4.3:+21318775 | None:intergenic |
| TTTGGCTTGGGCTGCTTCAA+GGG | 0.331789 | 4.3:+21318788 | None:intergenic |
| GCATCAACCTTCTCCCTATC+AGG | 0.335506 | 4.3:+21318361 | None:intergenic |
| TCGGATTCAGGGAGTTCTTC+AGG | 0.341320 | 4.3:-21318057 | MS.gene40093:CDS |
| TCACTGGAAGTGCTCGCGTT+GGG | 0.343551 | 4.3:+21318813 | None:intergenic |
| TTATTTGGATCCCTGGCCTT+TGG | 0.344705 | 4.3:+21318770 | None:intergenic |
| ACCCCATTGCCTTTGTTTGA+AGG | 0.345351 | 4.3:+21318494 | None:intergenic |
| GGCTGCTTCAAGGGCTTCAC+TGG | 0.348486 | 4.3:+21318797 | None:intergenic |
| ACCACCGTTGTGGTTTAGCC+TGG | 0.356873 | 4.3:+21319483 | None:intergenic |
| ACCGGTGGAGGGATTGGAAT+TGG | 0.357465 | 4.3:+21318935 | None:intergenic |
| CTGTTGACACGGAGACTCTC+TGG | 0.367522 | 4.3:-21318598 | MS.gene40093:CDS |
| CAGGCTCAGGCAGTGGCTCT+TGG | 0.369449 | 4.3:+21318903 | None:intergenic |
| AATTAAGCATCCTATGGATC+TGG | 0.371201 | 4.3:-21319233 | MS.gene40093:CDS |
| CGAACTGGTGACTGAGCTAA+TGG | 0.371584 | 4.3:+21318845 | None:intergenic |
| ACAACCGTAACGAACCAAAT+TGG | 0.373779 | 4.3:-21319771 | MS.gene40093:CDS |
| GATTAAGCGGCAGGCGCTAA+TGG | 0.380098 | 4.3:-21318531 | MS.gene40093:CDS |
| AAGAAATCAAAGTCAGAGAT+TGG | 0.382024 | 4.3:-21319388 | MS.gene40093:CDS |
| TCATCAAATTTCTCGTGTAT+TGG | 0.386676 | 4.3:+21319046 | None:intergenic |
| TTCTGTTTCTTTCCCTCAGA+AGG | 0.387137 | 4.3:+21318331 | None:intergenic |
| CTTGCTCCCTGATTTCTTAG+TGG | 0.395685 | 4.3:+21319456 | None:intergenic |
| TTGCTCCCTGATTTCTTAGT+GGG | 0.400065 | 4.3:+21319457 | None:intergenic |
| GATTGAGCAAGATAAAGATA+TGG | 0.403309 | 4.3:-21318236 | MS.gene40093:CDS |
| GGTGGTCCCACTAAGAAATC+AGG | 0.406385 | 4.3:-21319463 | MS.gene40093:CDS |
| TTTGCTACCGGTGGAGGGAT+TGG | 0.415792 | 4.3:+21318929 | None:intergenic |
| CTTAAGACTCGAATTGAATC+AGG | 0.417831 | 4.3:-21319517 | MS.gene40093:CDS |
| TGCCTTCAAACAAAGGCAAT+GGG | 0.422340 | 4.3:-21318496 | MS.gene40093:CDS |
| AGGAAAAGGTCGTTTGTTGC+CGG | 0.425299 | 4.3:+21319426 | None:intergenic |
| ACTACTTGTTCCATCTTCTC+TGG | 0.427581 | 4.3:+21318689 | None:intergenic |
| AAGGAAGAGAAATGGGCATT+TGG | 0.428825 | 4.3:-21318657 | MS.gene40093:CDS |
| CTAAATTTAGGGTTAGGGTT+AGG | 0.433996 | 4.3:+21319706 | None:intergenic |
| AGAAATCAAAGTCAGAGATT+GGG | 0.434900 | 4.3:-21319387 | MS.gene40093:CDS |
| GGATGAGATTGAGCTTGATA+TGG | 0.436408 | 4.3:-21318624 | MS.gene40093:CDS |
| ATTTACAGGAATTGCCTGAT+AGG | 0.443388 | 4.3:-21318375 | MS.gene40093:intron |
| CCCAGAGCTGCTGGAACCAC+TGG | 0.444706 | 4.3:+21318183 | None:intergenic |
| TCGATCGATTGGTTACCAAT+TGG | 0.445939 | 4.3:-21318571 | MS.gene40093:CDS |
| TGTTACTAAATTTAGGGTTA+GGG | 0.446081 | 4.3:+21319701 | None:intergenic |
| AGGCGGTGGAGCTGAATTCA+TGG | 0.450284 | 4.3:-21319737 | MS.gene40093:CDS |
| TGATATAATTAAGCATCCTA+TGG | 0.454884 | 4.3:-21319239 | MS.gene40093:CDS |
| ACAGGTGGGAAATCGTTTGC+TGG | 0.455112 | 4.3:+21318262 | None:intergenic |
| AATTCCTTCACCGCAGGAAA+AGG | 0.459833 | 4.3:+21319412 | None:intergenic |
| AGATCATAAGGAAGAGAAAT+GGG | 0.462775 | 4.3:-21318664 | MS.gene40093:CDS |
| AACAAGTAGTACAGATCATA+AGG | 0.463491 | 4.3:-21318676 | MS.gene40093:CDS |
| ATGGGCATTTGGAGCAAGAT+GGG | 0.463782 | 4.3:-21318646 | MS.gene40093:CDS |
| GCAGCCAATTTGGTTCGTTA+CGG | 0.464960 | 4.3:+21319767 | None:intergenic |
| TCAGGAAGTGATTCTGAAGC+TGG | 0.466135 | 4.3:-21318039 | MS.gene40093:CDS |
| ATTGAGCAAGATAAAGATAT+GGG | 0.469983 | 4.3:-21318235 | MS.gene40093:CDS |
| GTTTCTTTCCCTCAGAAGGA+GGG | 0.472060 | 4.3:+21318335 | None:intergenic |
| CAGATCATAAGGAAGAGAAA+TGG | 0.474728 | 4.3:-21318665 | MS.gene40093:CDS |
| GTTGGGGAGGGTATGCGAAC+TGG | 0.475235 | 4.3:+21318830 | None:intergenic |
| TGGAAGTGCTCGCGTTGGGG+AGG | 0.475254 | 4.3:+21318817 | None:intergenic |
| TTCATGCAGATTCGGATTCA+GGG | 0.475639 | 4.3:-21318068 | MS.gene40093:intron |
| GATAAAGATATGGGTGGTAC+TGG | 0.476434 | 4.3:-21318226 | MS.gene40093:CDS |
| GGAATCACTCCCAGAGCTGC+TGG | 0.477857 | 4.3:+21318174 | None:intergenic |
| TTCACTGGAAGTGCTCGCGT+TGG | 0.478335 | 4.3:+21318812 | None:intergenic |
| AGCAGCCCAAGCCAAAGGCC+AGG | 0.478818 | 4.3:-21318781 | MS.gene40093:CDS |
| GTGTTAACATCATGGCCCTT+GGG | 0.480899 | 4.3:+21319112 | None:intergenic |
| AGGCCAGGGATCCAAATAAG+AGG | 0.482051 | 4.3:-21318766 | MS.gene40093:CDS |
| GGGGATTCGAAGTGCTTGGC+TGG | 0.485173 | 4.3:+21318867 | None:intergenic |
| TTGATGAGGATGTTGACATC+GGG | 0.489567 | 4.3:-21318294 | MS.gene40093:CDS |
| AGAGATTGGGGATGCGATGA+AGG | 0.491863 | 4.3:-21319374 | MS.gene40093:CDS |
| TGTTTCTTTCCCTCAGAAGG+AGG | 0.493964 | 4.3:+21318334 | None:intergenic |
| GTACTAGCAGGCTCAGGCAG+TGG | 0.495175 | 4.3:+21318896 | None:intergenic |
| GGAACCACTGGAACTACTAC+TGG | 0.498470 | 4.3:+21318195 | None:intergenic |
| TTTCTTTCCCTCAGAAGGAG+GGG | 0.500315 | 4.3:+21318336 | None:intergenic |
| GCAGCCCAAGCCAAAGGCCA+GGG | 0.500330 | 4.3:-21318780 | MS.gene40093:CDS |
| CCAGTGGTTCCAGCAGCTCT+GGG | 0.500740 | 4.3:-21318183 | MS.gene40093:CDS |
| AGTGTTAACATCATGGCCCT+TGG | 0.504161 | 4.3:+21319111 | None:intergenic |
| GTTGGATCGTCGATTGATTG+AGG | 0.506931 | 4.3:+21319645 | None:intergenic |
| TTCTTCAATTCCTTCACCGC+AGG | 0.508468 | 4.3:+21319406 | None:intergenic |
| TTTCCCTCTCTGGTTCAACA+TGG | 0.510397 | 4.3:+21318984 | None:intergenic |
| ATGTTGAACCAGAGAGGGAA+AGG | 0.513945 | 4.3:-21318982 | MS.gene40093:CDS |
| TTATCTTGCTCAATCTCCAC+AGG | 0.515091 | 4.3:+21318244 | None:intergenic |
| AACCAGAGAGGGAAAGGGAG+AGG | 0.515203 | 4.3:-21318976 | MS.gene40093:CDS |
| GGTGAGCAAGATTAAGCGGC+AGG | 0.516928 | 4.3:-21318540 | MS.gene40093:CDS |
| TTTACAGGAATTGCCTGATA+GGG | 0.522059 | 4.3:-21318374 | MS.gene40093:intron |
| AATGGGCATTTGGAGCAAGA+TGG | 0.522107 | 4.3:-21318647 | MS.gene40093:CDS |
| ATTGAGGAAGCGTCATCTGA+TGG | 0.524535 | 4.3:+21319661 | None:intergenic |
| TGGCTGCAACACAGAGGCGG+TGG | 0.525481 | 4.3:-21319751 | MS.gene40093:CDS |
| GTGCCTTCAAACAAAGGCAA+TGG | 0.528594 | 4.3:-21318497 | MS.gene40093:CDS |
| CACTGGAAGTGCTCGCGTTG+GGG | 0.529411 | 4.3:+21318814 | None:intergenic |
| CCACCGTTGTGGTTTAGCCT+GGG | 0.530502 | 4.3:+21319484 | None:intergenic |
| TTGAGGAAGCGTCATCTGAT+GGG | 0.538515 | 4.3:+21319662 | None:intergenic |
| ATTAAGCATCCTATGGATCT+GGG | 0.539150 | 4.3:-21319232 | MS.gene40093:CDS |
| GAACTGGTGACTGAGCTAAT+GGG | 0.540318 | 4.3:+21318846 | None:intergenic |
| GGAAGTGCTCGCGTTGGGGA+GGG | 0.542081 | 4.3:+21318818 | None:intergenic |
| TTAGAAGTACTAGCAGGCTC+AGG | 0.542104 | 4.3:+21318890 | None:intergenic |
| GTATTGTGAATGATTATCGT+TGG | 0.542418 | 4.3:+21319627 | None:intergenic |
| GAAATCAAAGTCAGAGATTG+GGG | 0.550032 | 4.3:-21319386 | MS.gene40093:CDS |
| TGATGCAACCCCTCCTTCTG+AGG | 0.557199 | 4.3:-21318344 | MS.gene40093:CDS |
| AATAATGTGCCTTCAAACAA+AGG | 0.557916 | 4.3:-21318503 | MS.gene40093:CDS |
| ACTTGTTCCATCTTCTCTGG+TGG | 0.558187 | 4.3:+21318692 | None:intergenic |
| GGCTGGTTAGAAGTACTAGC+AGG | 0.564980 | 4.3:+21318884 | None:intergenic |
| TGTTGACACGGAGACTCTCT+GGG | 0.565659 | 4.3:-21318597 | MS.gene40093:CDS |
| TGTTGAACCAGAGAGGGAAA+GGG | 0.566133 | 4.3:-21318981 | MS.gene40093:CDS |
| GGCGGTGGAGCTGAATTCAT+GGG | 0.566531 | 4.3:-21319736 | MS.gene40093:CDS |
| CTTGAAGCAGCCCAAGCCAA+AGG | 0.568683 | 4.3:-21318786 | MS.gene40093:CDS |
| ACCAGAGAGGGAAAGGGAGA+GGG | 0.569026 | 4.3:-21318975 | MS.gene40093:CDS |
| TCCAATTCCAATCCCTCCAC+CGG | 0.570278 | 4.3:-21318936 | MS.gene40093:CDS |
| TCTTGCTCAATCTCCACAGG+TGG | 0.571533 | 4.3:+21318247 | None:intergenic |
| TCTCTGGGAACTCGATCGAT+TGG | 0.573945 | 4.3:-21318582 | MS.gene40093:CDS |
| TCGCCGCAGTGTTAACATCA+TGG | 0.579958 | 4.3:+21319104 | None:intergenic |
| ATGAATTACAGGCTAGCTCG+TGG | 0.582142 | 4.3:-21319009 | MS.gene40093:CDS |
| AGCAAACGATTTCCCACCTG+TGG | 0.582684 | 4.3:-21318260 | MS.gene40093:CDS |
| CATCGAATCGTACACAAAGA+CGG | 0.584140 | 4.3:-21319593 | MS.gene40093:CDS |
| TAGTGGGACCACCACCGTTG+TGG | 0.584586 | 4.3:+21319473 | None:intergenic |
| AACTGGTGACTGAGCTAATG+GGG | 0.588096 | 4.3:+21318847 | None:intergenic |
| TGCATTGACATACAATCCCA+AGG | 0.588241 | 4.3:-21319128 | MS.gene40093:CDS |
| AGTGATTCTGAAGCTGGCAA+TGG | 0.592321 | 4.3:-21318033 | MS.gene40093:CDS |
| AGGCTAAACCACAACGGTGG+TGG | 0.594359 | 4.3:-21319481 | MS.gene40093:CDS |
| TTGACAGTACCCAGATCCAT+AGG | 0.596367 | 4.3:+21319223 | None:intergenic |
| GAAGATAGATGCTGTTGATG+AGG | 0.601289 | 4.3:-21318308 | MS.gene40093:CDS |
| GATGCAACCCCTCCTTCTGA+GGG | 0.606162 | 4.3:-21318343 | MS.gene40093:CDS |
| TAACACTCCTGTAAATGCAA+CGG | 0.607221 | 4.3:-21319284 | MS.gene40093:CDS |
| CACTGGAACTACTACTGGCA+CGG | 0.608769 | 4.3:+21318200 | None:intergenic |
| GGCCAGGGATCCAAATAAGA+GGG | 0.609397 | 4.3:-21318765 | MS.gene40093:CDS |
| GAACCATGTTGAACCAGAGA+GGG | 0.610145 | 4.3:-21318987 | MS.gene40093:CDS |
| AAAGATATGGGTGGTACTGG+TGG | 0.610352 | 4.3:-21318223 | MS.gene40093:CDS |
| GTGGTCCCACTAAGAAATCA+GGG | 0.612863 | 4.3:-21319462 | MS.gene40093:CDS |
| TAAGAGGGAAATGAATGTTG+AGG | 0.616464 | 4.3:-21318750 | MS.gene40093:CDS |
| TGATATGGAGGCTGTTGACA+CGG | 0.617215 | 4.3:-21318609 | MS.gene40093:CDS |
| GGAATTGCCTGATAGGGAGA+AGG | 0.617711 | 4.3:-21318368 | MS.gene40093:CDS |
| ACATCAGCAGCAAAATCCGC+CGG | 0.619449 | 4.3:+21319169 | None:intergenic |
| TGAGGAAGCGTCATCTGATG+GGG | 0.626247 | 4.3:+21319663 | None:intergenic |
| GGGAGTGATTCCTCGTCGAG+TGG | 0.628680 | 4.3:-21318163 | MS.gene40093:intron |
| AGATGGTGAGCAAGATTAAG+CGG | 0.630774 | 4.3:-21318544 | MS.gene40093:CDS |
| TAAGAAATCAGGGAGCAAGA+AGG | 0.642181 | 4.3:-21319452 | MS.gene40093:CDS |
| CGTGCCAGTAGTAGTTCCAG+TGG | 0.651947 | 4.3:-21318199 | MS.gene40093:CDS |
| CTTGCTCAATCTCCACAGGT+GGG | 0.652511 | 4.3:+21318248 | None:intergenic |
| TGGGCATTTGGAGCAAGATG+GGG | 0.655326 | 4.3:-21318645 | MS.gene40093:CDS |
| GTTGATGAGGATGTTGACAT+CGG | 0.656686 | 4.3:-21318295 | MS.gene40093:CDS |
| TGAGATTGAGCTTGATATGG+AGG | 0.664012 | 4.3:-21318621 | MS.gene40093:CDS |
| GGAACCATGTTGAACCAGAG+AGG | 0.667661 | 4.3:-21318988 | MS.gene40093:CDS |
| GGGGATGCGATGAAGGCTTG+TGG | 0.668675 | 4.3:-21319367 | MS.gene40093:CDS |
| TAAGAATGCTTACTCTACGC+CGG | 0.674848 | 4.3:-21319188 | MS.gene40093:CDS |
| GCATTGACATACAATCCCAA+GGG | 0.679665 | 4.3:-21319127 | MS.gene40093:CDS |
| GAGCAAGATAAAGATATGGG+TGG | 0.688901 | 4.3:-21318232 | MS.gene40093:CDS |
| AATTGGCTGCAACACAGAGG+CGG | 0.689298 | 4.3:-21319754 | MS.gene40093:CDS |
| AATCAGGTGAGTTTAAACCC+AGG | 0.697049 | 4.3:-21319501 | MS.gene40093:CDS |
| GCCTTCAAACAAAGGCAATG+GGG | 0.698333 | 4.3:-21318495 | MS.gene40093:intron |
| ACTGGTGACTGAGCTAATGG+GGG | 0.699815 | 4.3:+21318848 | None:intergenic |
| GAATGCTTACTCTACGCCGG+CGG | 0.711544 | 4.3:-21319185 | MS.gene40093:CDS |
| CCCAGGCTAAACCACAACGG+TGG | 0.730798 | 4.3:-21319484 | MS.gene40093:CDS |
| CCAAATTGGCTGCAACACAG+AGG | 0.734243 | 4.3:-21319757 | MS.gene40093:CDS |
| AGAGGTTATACCACTCGACG+AGG | 0.738536 | 4.3:+21318153 | None:intergenic |
| AAACCCAGGCTAAACCACAA+CGG | 0.749218 | 4.3:-21319487 | MS.gene40093:CDS |
| GGGCCATGATGTTAACACTG+CGG | 0.770423 | 4.3:-21319107 | MS.gene40093:CDS |
| TGATGAGGATGTTGACATCG+GGG | 0.772888 | 4.3:-21318293 | MS.gene40093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTTGTTACTAAATTTA+GGG | + | chr4.3:21318121-21318140 | None:intergenic | 15.0% |
| !! | ATCATTCAACAGAATAAAAA+TGG | + | chr4.3:21319359-21319378 | None:intergenic | 20.0% |
| !!! | CTCTTTTTGTTACTAAATTT+AGG | + | chr4.3:21318122-21318141 | None:intergenic | 20.0% |
| ! | ATTGAGCAAGATAAAGATAT+GGG | - | chr4.3:21319578-21319597 | MS.gene40093:CDS | 25.0% |
| ! | CAGAATAAAAATGGACAATA+AGG | + | chr4.3:21319350-21319369 | None:intergenic | 25.0% |
| ! | TGATATAATTAAGCATCCTA+TGG | - | chr4.3:21318574-21318593 | MS.gene40093:CDS | 25.0% |
| !! | TGTTACTAAATTTAGGGTTA+GGG | + | chr4.3:21318115-21318134 | None:intergenic | 25.0% |
| !! | TTGTTACTAAATTTAGGGTT+AGG | + | chr4.3:21318116-21318135 | None:intergenic | 25.0% |
| !!! | AAGTTTTGATGATGAATTAC+AGG | - | chr4.3:21318793-21318812 | MS.gene40093:CDS | 25.0% |
| AACAAGTAGTACAGATCATA+AGG | - | chr4.3:21319137-21319156 | MS.gene40093:CDS | 30.0% | |
| AAGAAATCAAAGTCAGAGAT+TGG | - | chr4.3:21318425-21318444 | MS.gene40093:intron | 30.0% | |
| AAGCTCATGAAAAACAAAAG+TGG | - | chr4.3:21318482-21318501 | MS.gene40093:intron | 30.0% | |
| AATAATGTGCCTTCAAACAA+AGG | - | chr4.3:21319310-21319329 | MS.gene40093:CDS | 30.0% | |
| ACATTCATTTCCCTCTTATT+TGG | + | chr4.3:21319061-21319080 | None:intergenic | 30.0% | |
| AGAAATCAAAGTCAGAGATT+GGG | - | chr4.3:21318426-21318445 | MS.gene40093:intron | 30.0% | |
| AGATCATAAGGAAGAGAAAT+GGG | - | chr4.3:21319149-21319168 | MS.gene40093:CDS | 30.0% | |
| GATTGAGCAAGATAAAGATA+TGG | - | chr4.3:21319577-21319596 | MS.gene40093:CDS | 30.0% | |
| GTATTGTGAATGATTATCGT+TGG | + | chr4.3:21318189-21318208 | None:intergenic | 30.0% | |
| GTTGAGGAAAAACATAAGTT+GGG | - | chr4.3:21319079-21319098 | MS.gene40093:CDS | 30.0% | |
| TCATCAAATTTCTCGTGTAT+TGG | + | chr4.3:21318770-21318789 | None:intergenic | 30.0% | |
| TCATGAAAAACAAAAGTGGT+TGG | - | chr4.3:21318486-21318505 | MS.gene40093:intron | 30.0% | |
| TGTTGAGGAAAAACATAAGT+TGG | - | chr4.3:21319078-21319097 | MS.gene40093:CDS | 30.0% | |
| ! | AAAAACATAAGTTGGGACTA+GGG | - | chr4.3:21319086-21319105 | MS.gene40093:CDS | 30.0% |
| ! | TTTTGATCTTCATGCAGATT+CGG | - | chr4.3:21319737-21319756 | MS.gene40093:CDS | 30.0% |
| !! | AATTTGTTGTGTGCATTTAC+AGG | - | chr4.3:21319424-21319443 | MS.gene40093:CDS | 30.0% |
| !! | TTGTACTCTGAAATCATCAT+GGG | - | chr4.3:21319702-21319721 | MS.gene40093:CDS | 30.0% |
| !! | TTTGTACTCTGAAATCATCA+TGG | - | chr4.3:21319701-21319720 | MS.gene40093:CDS | 30.0% |
| AATTAAGCATCCTATGGATC+TGG | - | chr4.3:21318580-21318599 | MS.gene40093:CDS | 35.0% | |
| ATTAAGCATCCTATGGATCT+GGG | - | chr4.3:21318581-21318600 | MS.gene40093:CDS | 35.0% | |
| ATTTACAGGAATTGCCTGAT+AGG | - | chr4.3:21319438-21319457 | MS.gene40093:CDS | 35.0% | |
| CAGATCATAAGGAAGAGAAA+TGG | - | chr4.3:21319148-21319167 | MS.gene40093:CDS | 35.0% | |
| CTTAAGACTCGAATTGAATC+AGG | - | chr4.3:21318296-21318315 | MS.gene40093:CDS | 35.0% | |
| GAAATCAAAGTCAGAGATTG+GGG | - | chr4.3:21318427-21318446 | MS.gene40093:intron | 35.0% | |
| GGTTACCAATTGGAAAAAGA+TGG | - | chr4.3:21319252-21319271 | MS.gene40093:CDS | 35.0% | |
| TAACACTCCTGTAAATGCAA+CGG | - | chr4.3:21318529-21318548 | MS.gene40093:CDS | 35.0% | |
| TAAGAGGGAAATGAATGTTG+AGG | - | chr4.3:21319063-21319082 | MS.gene40093:CDS | 35.0% | |
| TTTACAGGAATTGCCTGATA+GGG | - | chr4.3:21319439-21319458 | MS.gene40093:CDS | 35.0% | |
| ! | CTAAATTTAGGGTTAGGGTT+AGG | + | chr4.3:21318110-21318129 | None:intergenic | 35.0% |
| ! | GAAAAACATAAGTTGGGACT+AGG | - | chr4.3:21319085-21319104 | MS.gene40093:CDS | 35.0% |
| ! | GTGGTTGGATTTTTAACACT+TGG | - | chr4.3:21318501-21318520 | MS.gene40093:CDS | 35.0% |
| AAGGAAGAGAAATGGGCATT+TGG | - | chr4.3:21319156-21319175 | MS.gene40093:CDS | 40.0% | |
| AATCAGGTGAGTTTAAACCC+AGG | - | chr4.3:21318312-21318331 | MS.gene40093:CDS | 40.0% | |
| ACAACCGTAACGAACCAAAT+TGG | - | chr4.3:21318042-21318061 | MS.gene40093:CDS | 40.0% | |
| ACTACTTGTTCCATCTTCTC+TGG | + | chr4.3:21319127-21319146 | None:intergenic | 40.0% | |
| AGATGGTGAGCAAGATTAAG+CGG | - | chr4.3:21319269-21319288 | MS.gene40093:CDS | 40.0% | |
| CATCGAATCGTACACAAAGA+CGG | - | chr4.3:21318220-21318239 | MS.gene40093:CDS | 40.0% | |
| CTGCATGAAGATCAAAACTG+AGG | + | chr4.3:21319734-21319753 | None:intergenic | 40.0% | |
| GAAGATAGATGCTGTTGATG+AGG | - | chr4.3:21319505-21319524 | MS.gene40093:CDS | 40.0% | |
| GAGCAAGATAAAGATATGGG+TGG | - | chr4.3:21319581-21319600 | MS.gene40093:CDS | 40.0% | |
| GAGTCTTAAGCTGACGAATT+TGG | + | chr4.3:21318286-21318305 | None:intergenic | 40.0% | |
| GATAAAGATATGGGTGGTAC+TGG | - | chr4.3:21319587-21319606 | MS.gene40093:CDS | 40.0% | |
| GCAGCTTCTTGAAAAATTCG+AGG | - | chr4.3:21318733-21318752 | MS.gene40093:CDS | 40.0% | |
| GCTGTCTAATGTAGCATTGT+TGG | - | chr4.3:21319382-21319401 | MS.gene40093:CDS | 40.0% | |
| GGATGAGATTGAGCTTGATA+TGG | - | chr4.3:21319189-21319208 | MS.gene40093:CDS | 40.0% | |
| GTACAAACCACAGCATTTAG+AGG | + | chr4.3:21319688-21319707 | None:intergenic | 40.0% | |
| TAAGAAATCAGGGAGCAAGA+AGG | - | chr4.3:21318361-21318380 | MS.gene40093:CDS | 40.0% | |
| TAAGAATGCTTACTCTACGC+CGG | - | chr4.3:21318625-21318644 | MS.gene40093:CDS | 40.0% | |
| TGAGATTGAGCTTGATATGG+AGG | - | chr4.3:21319192-21319211 | MS.gene40093:CDS | 40.0% | |
| TGCCTTCAAACAAAGGCAAT+GGG | - | chr4.3:21319317-21319336 | MS.gene40093:CDS | 40.0% | |
| TTATCTTGCTCAATCTCCAC+AGG | + | chr4.3:21319572-21319591 | None:intergenic | 40.0% | |
| TTCAAAGCCGTTGCATTTAC+AGG | + | chr4.3:21318539-21318558 | None:intergenic | 40.0% | |
| TTCATGCAGATTCGGATTCA+GGG | - | chr4.3:21319745-21319764 | MS.gene40093:CDS | 40.0% | |
| TTGATGAGGATGTTGACATC+GGG | - | chr4.3:21319519-21319538 | MS.gene40093:CDS | 40.0% | |
| TTGCTCCCTGATTTCTTAGT+GGG | + | chr4.3:21318359-21318378 | None:intergenic | 40.0% | |
| ! | GCATTGACATACAATCCCAA+GGG | - | chr4.3:21318686-21318705 | MS.gene40093:CDS | 40.0% |
| ! | GCTCACCATCTTTTTCCAAT+TGG | + | chr4.3:21319260-21319279 | None:intergenic | 40.0% |
| ! | GTTGATGAGGATGTTGACAT+CGG | - | chr4.3:21319518-21319537 | MS.gene40093:CDS | 40.0% |
| ! | TCGATCGATTGGTTACCAAT+TGG | - | chr4.3:21319242-21319261 | MS.gene40093:CDS | 40.0% |
| ! | TGCATTGACATACAATCCCA+AGG | - | chr4.3:21318685-21318704 | MS.gene40093:CDS | 40.0% |
| ! | TTCTGTTTCTTTCCCTCAGA+AGG | + | chr4.3:21319485-21319504 | None:intergenic | 40.0% |
| AAACCCAGGCTAAACCACAA+CGG | - | chr4.3:21318326-21318345 | MS.gene40093:CDS | 45.0% | |
| AACTGGTGACTGAGCTAATG+GGG | + | chr4.3:21318969-21318988 | None:intergenic | 45.0% | |
| AATTCCTTCACCGCAGGAAA+AGG | + | chr4.3:21318404-21318423 | None:intergenic | 45.0% | |
| ACTTGTTCCATCTTCTCTGG+TGG | + | chr4.3:21319124-21319143 | None:intergenic | 45.0% | |
| AGTGTTAACATCATGGCCCT+TGG | + | chr4.3:21318705-21318724 | None:intergenic | 45.0% | |
| ATGTTGAACCAGAGAGGGAA+AGG | - | chr4.3:21318831-21318850 | MS.gene40093:CDS | 45.0% | |
| CCACAGCATTTAGAGGAAAG+AGG | + | chr4.3:21319681-21319700 | None:intergenic | 45.0% | |
| CCTCTTTCCTCTAAATGCTG+TGG | - | chr4.3:21319678-21319697 | MS.gene40093:CDS | 45.0% | |
| CTTCATGCAGATTCGGATTC+AGG | - | chr4.3:21319744-21319763 | MS.gene40093:CDS | 45.0% | |
| CTTGCTCCCTGATTTCTTAG+TGG | + | chr4.3:21318360-21318379 | None:intergenic | 45.0% | |
| GAACCATGTTGAACCAGAGA+GGG | - | chr4.3:21318826-21318845 | MS.gene40093:CDS | 45.0% | |
| GAACTGGTGACTGAGCTAAT+GGG | + | chr4.3:21318970-21318989 | None:intergenic | 45.0% | |
| GCCTTCAAACAAAGGCAATG+GGG | - | chr4.3:21319318-21319337 | MS.gene40093:CDS | 45.0% | |
| GTGCCTTCAAACAAAGGCAA+TGG | - | chr4.3:21319316-21319335 | MS.gene40093:CDS | 45.0% | |
| GTGGTCCCACTAAGAAATCA+GGG | - | chr4.3:21318351-21318370 | MS.gene40093:CDS | 45.0% | |
| GTGTTAACATCATGGCCCTT+GGG | + | chr4.3:21318704-21318723 | None:intergenic | 45.0% | |
| GTTTCTTTCCCTCAGAAGGA+GGG | + | chr4.3:21319481-21319500 | None:intergenic | 45.0% | |
| TGATATGGAGGCTGTTGACA+CGG | - | chr4.3:21319204-21319223 | MS.gene40093:CDS | 45.0% | |
| TGATGAGGATGTTGACATCG+GGG | - | chr4.3:21319520-21319539 | MS.gene40093:CDS | 45.0% | |
| TGTTGAACCAGAGAGGGAAA+GGG | - | chr4.3:21318832-21318851 | MS.gene40093:CDS | 45.0% | |
| TGTTTCTTTCCCTCAGAAGG+AGG | + | chr4.3:21319482-21319501 | None:intergenic | 45.0% | |
| TTCTTCAATTCCTTCACCGC+AGG | + | chr4.3:21318410-21318429 | None:intergenic | 45.0% | |
| TTGACAGTACCCAGATCCAT+AGG | + | chr4.3:21318593-21318612 | None:intergenic | 45.0% | |
| TTTCTTTCCCTCAGAAGGAG+GGG | + | chr4.3:21319480-21319499 | None:intergenic | 45.0% | |
| ! | AAAGATATGGGTGGTACTGG+TGG | - | chr4.3:21319590-21319609 | MS.gene40093:CDS | 45.0% |
| ! | AATGGGCATTTGGAGCAAGA+TGG | - | chr4.3:21319166-21319185 | MS.gene40093:CDS | 45.0% |
| ! | ACCCCATTGCCTTTGTTTGA+AGG | + | chr4.3:21319322-21319341 | None:intergenic | 45.0% |
| ! | AGGAAAAGGTCGTTTGTTGC+CGG | + | chr4.3:21318390-21318409 | None:intergenic | 45.0% |
| ! | ATGAATTACAGGCTAGCTCG+TGG | - | chr4.3:21318804-21318823 | MS.gene40093:CDS | 45.0% |
| ! | ATGGGCATTTGGAGCAAGAT+GGG | - | chr4.3:21319167-21319186 | MS.gene40093:CDS | 45.0% |
| ! | CAACAAACGACCTTTTCCTG+CGG | - | chr4.3:21318391-21318410 | MS.gene40093:intron | 45.0% |
| ! | GATTTTGCCACCAGAGAAGA+TGG | - | chr4.3:21319114-21319133 | MS.gene40093:CDS | 45.0% |
| ! | GCAGCCAATTTGGTTCGTTA+CGG | + | chr4.3:21318049-21318068 | None:intergenic | 45.0% |
| ! | GTTGGATCGTCGATTGATTG+AGG | + | chr4.3:21318171-21318190 | None:intergenic | 45.0% |
| ! | TTATTTGGATCCCTGGCCTT+TGG | + | chr4.3:21319046-21319065 | None:intergenic | 45.0% |
| ! | TTCCCTCTTATTTGGATCCC+TGG | + | chr4.3:21319053-21319072 | None:intergenic | 45.0% |
| ! | TTTCCCTCTCTGGTTCAACA+TGG | + | chr4.3:21318832-21318851 | None:intergenic | 45.0% |
| !! | AGTGATTCTGAAGCTGGCAA+TGG | - | chr4.3:21319780-21319799 | MS.gene40093:CDS | 45.0% |
| !! | ATTGAGGAAGCGTCATCTGA+TGG | + | chr4.3:21318155-21318174 | None:intergenic | 45.0% |
| !! | TCAGGAAGTGATTCTGAAGC+TGG | - | chr4.3:21319774-21319793 | MS.gene40093:CDS | 45.0% |
| !! | TTAGAAGTACTAGCAGGCTC+AGG | + | chr4.3:21318926-21318945 | None:intergenic | 45.0% |
| !! | TTGAGGAAGCGTCATCTGAT+GGG | + | chr4.3:21318154-21318173 | None:intergenic | 45.0% |
| AATTGGCTGCAACACAGAGG+CGG | - | chr4.3:21318059-21318078 | MS.gene40093:CDS | 50.0% | |
| ACAGGTGGGAAATCGTTTGC+TGG | + | chr4.3:21319554-21319573 | None:intergenic | 50.0% | |
| ACATCAGCAGCAAAATCCGC+CGG | + | chr4.3:21318647-21318666 | None:intergenic | 50.0% | |
| ACTGGTGACTGAGCTAATGG+GGG | + | chr4.3:21318968-21318987 | None:intergenic | 50.0% | |
| AGAGATTGGGGATGCGATGA+AGG | - | chr4.3:21318439-21318458 | MS.gene40093:intron | 50.0% | |
| AGAGGTTATACCACTCGACG+AGG | + | chr4.3:21319663-21319682 | None:intergenic | 50.0% | |
| AGCAAACGATTTCCCACCTG+TGG | - | chr4.3:21319553-21319572 | MS.gene40093:CDS | 50.0% | |
| AGGCCAGGGATCCAAATAAG+AGG | - | chr4.3:21319047-21319066 | MS.gene40093:CDS | 50.0% | |
| CACTGGAACTACTACTGGCA+CGG | + | chr4.3:21319616-21319635 | None:intergenic | 50.0% | |
| CCAAATTGGCTGCAACACAG+AGG | - | chr4.3:21318056-21318075 | MS.gene40093:CDS | 50.0% | |
| CCTCTGTGTTGCAGCCAATT+TGG | + | chr4.3:21318059-21318078 | None:intergenic | 50.0% | |
| CGAACTGGTGACTGAGCTAA+TGG | + | chr4.3:21318971-21318990 | None:intergenic | 50.0% | |
| CTTGCTCAATCTCCACAGGT+GGG | + | chr4.3:21319568-21319587 | None:intergenic | 50.0% | |
| GCATCAACCTTCTCCCTATC+AGG | + | chr4.3:21319455-21319474 | None:intergenic | 50.0% | |
| GGAACCACTGGAACTACTAC+TGG | + | chr4.3:21319621-21319640 | None:intergenic | 50.0% | |
| GGAACCATGTTGAACCAGAG+AGG | - | chr4.3:21318825-21318844 | MS.gene40093:CDS | 50.0% | |
| GGAATTGCCTGATAGGGAGA+AGG | - | chr4.3:21319445-21319464 | MS.gene40093:CDS | 50.0% | |
| GGCCAGGGATCCAAATAAGA+GGG | - | chr4.3:21319048-21319067 | MS.gene40093:CDS | 50.0% | |
| GGGCCATGATGTTAACACTG+CGG | - | chr4.3:21318706-21318725 | MS.gene40093:CDS | 50.0% | |
| GGTGGTCCCACTAAGAAATC+AGG | - | chr4.3:21318350-21318369 | MS.gene40093:CDS | 50.0% | |
| TCAGGGAGCAAGAAGGTTTC+CGG | - | chr4.3:21318368-21318387 | MS.gene40093:CDS | 50.0% | |
| TCCAATTCCAATCCCTCCAC+CGG | - | chr4.3:21318877-21318896 | MS.gene40093:CDS | 50.0% | |
| TCGCCGCAGTGTTAACATCA+TGG | + | chr4.3:21318712-21318731 | None:intergenic | 50.0% | |
| TCGGATTCAGGGAGTTCTTC+AGG | - | chr4.3:21319756-21319775 | MS.gene40093:CDS | 50.0% | |
| TCTTGCTCAATCTCCACAGG+TGG | + | chr4.3:21319569-21319588 | None:intergenic | 50.0% | |
| TGTTGACACGGAGACTCTCT+GGG | - | chr4.3:21319216-21319235 | MS.gene40093:CDS | 50.0% | |
| ! | AATGGGGGATTCGAAGTGCT+TGG | + | chr4.3:21318953-21318972 | None:intergenic | 50.0% |
| ! | TCTCTGGGAACTCGATCGAT+TGG | - | chr4.3:21319231-21319250 | MS.gene40093:CDS | 50.0% |
| ! | TGGGCATTTGGAGCAAGATG+GGG | - | chr4.3:21319168-21319187 | MS.gene40093:CDS | 50.0% |
| !! | GGCTGGTTAGAAGTACTAGC+AGG | + | chr4.3:21318932-21318951 | None:intergenic | 50.0% |
| !! | TGAGGAAGCGTCATCTGATG+GGG | + | chr4.3:21318153-21318172 | None:intergenic | 50.0% |
| !! | TTTGGCTTGGGCTGCTTCAA+GGG | + | chr4.3:21319028-21319047 | None:intergenic | 50.0% |
| AACCAGAGAGGGAAAGGGAG+AGG | - | chr4.3:21318837-21318856 | MS.gene40093:CDS | 55.0% | |
| ACCACCGTTGTGGTTTAGCC+TGG | + | chr4.3:21318333-21318352 | None:intergenic | 55.0% | |
| ACCAGAGAGGGAAAGGGAGA+GGG | - | chr4.3:21318838-21318857 | MS.gene40093:CDS | 55.0% | |
| ACCGGTGGAGGGATTGGAAT+TGG | + | chr4.3:21318881-21318900 | None:intergenic | 55.0% | |
| AGGCGGTGGAGCTGAATTCA+TGG | - | chr4.3:21318076-21318095 | MS.gene40093:intron | 55.0% | |
| AGGCTAAACCACAACGGTGG+TGG | - | chr4.3:21318332-21318351 | MS.gene40093:CDS | 55.0% | |
| CCACCGTTGTGGTTTAGCCT+GGG | + | chr4.3:21318332-21318351 | None:intergenic | 55.0% | |
| CGTGCCAGTAGTAGTTCCAG+TGG | - | chr4.3:21319614-21319633 | MS.gene40093:CDS | 55.0% | |
| CTGTTGACACGGAGACTCTC+TGG | - | chr4.3:21319215-21319234 | MS.gene40093:CDS | 55.0% | |
| CTTGAAGCAGCCCAAGCCAA+AGG | - | chr4.3:21319027-21319046 | MS.gene40093:CDS | 55.0% | |
| GAATGCTTACTCTACGCCGG+CGG | - | chr4.3:21318628-21318647 | MS.gene40093:CDS | 55.0% | |
| GATGCAACCCCTCCTTCTGA+GGG | - | chr4.3:21319470-21319489 | MS.gene40093:CDS | 55.0% | |
| GATTAAGCGGCAGGCGCTAA+TGG | - | chr4.3:21319282-21319301 | MS.gene40093:CDS | 55.0% | |
| GGCGGTGGAGCTGAATTCAT+GGG | - | chr4.3:21318077-21318096 | MS.gene40093:intron | 55.0% | |
| GGTGAGCAAGATTAAGCGGC+AGG | - | chr4.3:21319273-21319292 | MS.gene40093:CDS | 55.0% | |
| TGATGCAACCCCTCCTTCTG+AGG | - | chr4.3:21319469-21319488 | MS.gene40093:CDS | 55.0% | |
| TTTGCTACCGGTGGAGGGAT+TGG | + | chr4.3:21318887-21318906 | None:intergenic | 55.0% | |
| ! | ACGACCTTTTCCTGCGGTGA+AGG | - | chr4.3:21318397-21318416 | MS.gene40093:intron | 55.0% |
| ! | GGCTCTTGGCGTTTTGCTAC+CGG | + | chr4.3:21318899-21318918 | None:intergenic | 55.0% |
| ! | TCTTGGCGTTTTGCTACCGG+TGG | + | chr4.3:21318896-21318915 | None:intergenic | 55.0% |
| !! | CTTTGGCTTGGGCTGCTTCA+AGG | + | chr4.3:21319029-21319048 | None:intergenic | 55.0% |
| !! | TCACTGGAAGTGCTCGCGTT+GGG | + | chr4.3:21319003-21319022 | None:intergenic | 55.0% |
| !! | TTCACTGGAAGTGCTCGCGT+TGG | + | chr4.3:21319004-21319023 | None:intergenic | 55.0% |
| ACCCTCTCCCTTTCCCTCTC+TGG | + | chr4.3:21318842-21318861 | None:intergenic | 60.0% | |
| CCAGTGGTTCCAGCAGCTCT+GGG | - | chr4.3:21319630-21319649 | MS.gene40093:CDS | 60.0% | |
| CCCAGGCTAAACCACAACGG+TGG | - | chr4.3:21318329-21318348 | MS.gene40093:CDS | 60.0% | |
| GGAATCACTCCCAGAGCTGC+TGG | + | chr4.3:21319642-21319661 | None:intergenic | 60.0% | |
| GGCTGCTTCAAGGGCTTCAC+TGG | + | chr4.3:21319019-21319038 | None:intergenic | 60.0% | |
| GGGAGTGATTCCTCGTCGAG+TGG | - | chr4.3:21319650-21319669 | MS.gene40093:CDS | 60.0% | |
| GGGGATGCGATGAAGGCTTG+TGG | - | chr4.3:21318446-21318465 | MS.gene40093:intron | 60.0% | |
| GTACTAGCAGGCTCAGGCAG+TGG | + | chr4.3:21318920-21318939 | None:intergenic | 60.0% | |
| TAGTGGGACCACCACCGTTG+TGG | + | chr4.3:21318343-21318362 | None:intergenic | 60.0% | |
| TCCAGTGGTTCCAGCAGCTC+TGG | - | chr4.3:21319629-21319648 | MS.gene40093:CDS | 60.0% | |
| ! | GGATCCCTGGCCTTTGGCTT+GGG | + | chr4.3:21319040-21319059 | None:intergenic | 60.0% |
| ! | GGCGTTTTGCTACCGGTGGA+GGG | + | chr4.3:21318892-21318911 | None:intergenic | 60.0% |
| ! | GGGGATTCGAAGTGCTTGGC+TGG | + | chr4.3:21318949-21318968 | None:intergenic | 60.0% |
| ! | GTTGGGGAGGGTATGCGAAC+TGG | + | chr4.3:21318986-21319005 | None:intergenic | 60.0% |
| ! | TGGATCCCTGGCCTTTGGCT+TGG | + | chr4.3:21319041-21319060 | None:intergenic | 60.0% |
| ! | TGGCGTTTTGCTACCGGTGG+AGG | + | chr4.3:21318893-21318912 | None:intergenic | 60.0% |
| !! | CACTGGAAGTGCTCGCGTTG+GGG | + | chr4.3:21319002-21319021 | None:intergenic | 60.0% |
| AGCAGCCCAAGCCAAAGGCC+AGG | - | chr4.3:21319032-21319051 | MS.gene40093:CDS | 65.0% | |
| CAGGCTCAGGCAGTGGCTCT+TGG | + | chr4.3:21318913-21318932 | None:intergenic | 65.0% | |
| CCCAGAGCTGCTGGAACCAC+TGG | + | chr4.3:21319633-21319652 | None:intergenic | 65.0% | |
| GCAGCCCAAGCCAAAGGCCA+GGG | - | chr4.3:21319033-21319052 | MS.gene40093:CDS | 65.0% | |
| TGGCTGCAACACAGAGGCGG+TGG | - | chr4.3:21318062-21318081 | MS.gene40093:CDS | 65.0% | |
| !! | GGAAGTGCTCGCGTTGGGGA+GGG | + | chr4.3:21318998-21319017 | None:intergenic | 65.0% |
| !! | TGGAAGTGCTCGCGTTGGGG+AGG | + | chr4.3:21318999-21319018 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 21318023 | 21319812 | 21318023 | ID=MS.gene40093 |
| chr4.3 | mRNA | 21318023 | 21319812 | 21318023 | ID=MS.gene40093.t1;Parent=MS.gene40093 |
| chr4.3 | exon | 21318496 | 21319812 | 21318496 | ID=MS.gene40093.t1.exon1;Parent=MS.gene40093.t1 |
| chr4.3 | CDS | 21318496 | 21319812 | 21318496 | ID=cds.MS.gene40093.t1;Parent=MS.gene40093.t1 |
| chr4.3 | exon | 21318164 | 21318389 | 21318164 | ID=MS.gene40093.t1.exon2;Parent=MS.gene40093.t1 |
| chr4.3 | CDS | 21318164 | 21318389 | 21318164 | ID=cds.MS.gene40093.t1;Parent=MS.gene40093.t1 |
| chr4.3 | exon | 21318023 | 21318081 | 21318023 | ID=MS.gene40093.t1.exon3;Parent=MS.gene40093.t1 |
| chr4.3 | CDS | 21318023 | 21318081 | 21318023 | ID=cds.MS.gene40093.t1;Parent=MS.gene40093.t1 |
| Gene Sequence |
| Protein sequence |
