Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40799.t1 | XP_003591208.2 | 98.5 | 680 | 9 | 1 | 199 | 878 | 199 | 877 | 0.00E+00 | 1260.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40799.t1 | Q9LFE0 | 64.2 | 657 | 207 | 9 | 238 | 877 | 174 | 819 | 4.9e-213 | 742.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40799.t1 | G7I9G8 | 98.5 | 680 | 9 | 1 | 199 | 878 | 199 | 877 | 0.0e+00 | 1260.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene40799 | 0.83042 | 2.97E-55 | -1.69E-46 |
| MS.gene04918 | MS.gene40799 | 0.81466 | 1.38E-51 | -1.69E-46 |
| MS.gene049343 | MS.gene40799 | 0.822859 | 1.89E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene40799 | 0.80807 | 3.71E-50 | -1.69E-46 |
| MS.gene049419 | MS.gene40799 | -0.807306 | 5.39E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene40799 | 0.833228 | 6.02E-56 | -1.69E-46 |
| MS.gene049652 | MS.gene40799 | 0.811603 | 6.45E-51 | -1.69E-46 |
| MS.gene049680 | MS.gene40799 | 0.806682 | 7.31E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene40799 | 0.815658 | 8.26E-52 | -1.69E-46 |
| MS.gene050081 | MS.gene40799 | 0.811258 | 7.66E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene40799 | 0.808428 | 3.11E-50 | -1.69E-46 |
| MS.gene050737 | MS.gene40799 | 0.838259 | 3.20E-57 | -1.69E-46 |
| MS.gene050941 | MS.gene40799 | 0.82425 | 8.93E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene40799 | 0.816585 | 5.13E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene40799 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene052518 | MS.gene40799 | 0.866825 | 2.15E-65 | -1.69E-46 |
| MS.gene052519 | MS.gene40799 | 0.810709 | 1.01E-50 | -1.69E-46 |
| MS.gene053146 | MS.gene40799 | 0.811221 | 7.80E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene40799 | 0.801682 | 8.02E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene40799 | -0.833141 | 6.32E-56 | -1.69E-46 |
| MS.gene053427 | MS.gene40799 | 0.802445 | 5.59E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene40799 | 0.82622 | 3.06E-54 | -1.69E-46 |
| MS.gene054582 | MS.gene40799 | 0.805542 | 1.27E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene40799 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene40799 | 0.812502 | 4.11E-51 | -1.69E-46 |
| MS.gene054709 | MS.gene40799 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene054940 | MS.gene40799 | 0.801998 | 6.91E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene40799 | 0.832035 | 1.19E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene40799 | 0.808197 | 3.49E-50 | -1.69E-46 |
| MS.gene056010 | MS.gene40799 | 0.819215 | 1.31E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene40799 | 0.865258 | 6.73E-65 | -1.69E-46 |
| MS.gene05690 | MS.gene40799 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene40799 | 0.859329 | 4.46E-63 | -1.69E-46 |
| MS.gene057208 | MS.gene40799 | 0.831491 | 1.62E-55 | -1.69E-46 |
| MS.gene057855 | MS.gene40799 | 0.804588 | 2.01E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene40799 | 0.804387 | 2.21E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene40799 | 0.843667 | 1.22E-58 | -1.69E-46 |
| MS.gene058783 | MS.gene40799 | 0.85512 | 7.81E-62 | -1.69E-46 |
| MS.gene05952 | MS.gene40799 | 0.810255 | 1.26E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene40799 | -0.840761 | 7.16E-58 | -1.69E-46 |
| MS.gene060338 | MS.gene40799 | 0.831111 | 2.01E-55 | -1.69E-46 |
| MS.gene060527 | MS.gene40799 | 0.803672 | 3.12E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene40799 | 0.803008 | 4.28E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene40799 | 0.823138 | 1.63E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene40799 | 0.805098 | 1.57E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene40799 | 0.876838 | 1.02E-68 | -1.69E-46 |
| MS.gene060937 | MS.gene40799 | 0.877372 | 6.63E-69 | -1.69E-46 |
| MS.gene061100 | MS.gene40799 | 0.832808 | 7.65E-56 | -1.69E-46 |
| MS.gene061188 | MS.gene40799 | 0.830248 | 3.27E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40799.t1 | MTR_1g083910 | 97.950 | 878 | 17 | 1 | 1 | 878 | 1 | 877 | 0.0 | 1710 |
| MS.gene40799.t1 | MTR_1g083910 | 97.494 | 878 | 17 | 2 | 1 | 878 | 1 | 873 | 0.0 | 1695 |
| MS.gene40799.t1 | MTR_1g083910 | 97.630 | 633 | 10 | 2 | 246 | 878 | 24 | 651 | 0.0 | 1249 |
| MS.gene40799.t1 | MTR_1g032020 | 70.081 | 859 | 181 | 14 | 1 | 844 | 1 | 798 | 0.0 | 1026 |
| MS.gene40799.t1 | MTR_1g032350 | 70.081 | 859 | 181 | 14 | 1 | 844 | 1 | 798 | 0.0 | 1026 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40799.t1 | AT5G16780 | 60.658 | 821 | 276 | 13 | 72 | 873 | 28 | 820 | 0.0 | 860 |
| MS.gene40799.t1 | AT5G16780 | 60.658 | 821 | 276 | 13 | 72 | 873 | 28 | 820 | 0.0 | 860 |
| MS.gene40799.t1 | AT5G16780 | 60.658 | 821 | 276 | 13 | 72 | 873 | 28 | 820 | 0.0 | 860 |
| MS.gene40799.t1 | AT3G14700 | 46.479 | 142 | 56 | 4 | 675 | 813 | 80 | 204 | 1.31e-21 | 94.4 |
| MS.gene40799.t1 | AT3G14700 | 46.479 | 142 | 56 | 4 | 675 | 813 | 80 | 204 | 1.31e-21 | 94.4 |
Find 239 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCAGGTTGAGCACTTTC+TGG | 0.176468 | 1.2:+59593914 | MS.gene40799:intron |
| GTTCCGGAAGGGAACGTATT+AGG | 0.221293 | 1.2:+59583139 | MS.gene40799:CDS |
| TCTTTCTTGCTCATCTTTGA+TGG | 0.249425 | 1.2:-59589844 | None:intergenic |
| AATATCACCATCAGCAAGTA+TGG | 0.257075 | 1.2:-59588652 | None:intergenic |
| ATAGGGAGCGTGAGAAAGAT+AGG | 0.261564 | 1.2:+59583280 | MS.gene40799:CDS |
| GCAGCCGGATCATCATATTT+TGG | 0.261898 | 1.2:-59588993 | None:intergenic |
| TTGTTCTGGACGAAGTAATT+TGG | 0.267374 | 1.2:-59589928 | None:intergenic |
| GAAGCTGAAGCTGTCTCTTC+AGG | 0.292774 | 1.2:+59589774 | MS.gene40799:CDS |
| TTTGGGGTGCCCGAGTTTGA+TGG | 0.321687 | 1.2:-59593975 | None:intergenic |
| AAAGGAAGCACCAAATAAAA+AGG | 0.322540 | 1.2:+59590939 | MS.gene40799:CDS |
| GTGGAGAAGGAGAGAGGTTC+CGG | 0.331514 | 1.2:+59583123 | MS.gene40799:CDS |
| TTTGAAGACCTTACTTCATC+TGG | 0.332576 | 1.2:+59589645 | MS.gene40799:CDS |
| TTCCGGAAGGGAACGTATTA+GGG | 0.342718 | 1.2:+59583140 | MS.gene40799:CDS |
| TCCTCCTTGTCCTCTGAGTT+GGG | 0.349750 | 1.2:-59590751 | None:intergenic |
| TTAACATACGGAGATTGTTC+TGG | 0.351909 | 1.2:-59589942 | None:intergenic |
| TAGGGATAGGGAGAGGGATA+AGG | 0.361568 | 1.2:+59583359 | MS.gene40799:CDS |
| ATTGAGAGGACAGATGAGTT+TGG | 0.364228 | 1.2:+59590970 | MS.gene40799:CDS |
| AGAAAGAGCGCGAGAGGGAG+AGG | 0.366243 | 1.2:+59583235 | MS.gene40799:CDS |
| CTCCTCCTTGTCCTCTGAGT+TGG | 0.371973 | 1.2:-59590752 | None:intergenic |
| ATGACCACTAAGAACAAGAT+AGG | 0.372572 | 1.2:-59592196 | None:intergenic |
| ATAGGGAAAGTTATAGAGAC+GGG | 0.380843 | 1.2:+59583406 | MS.gene40799:CDS |
| TAGCCGTCTAGCTTTCTCTA+AGG | 0.384919 | 1.2:-59590021 | None:intergenic |
| ACACCCTATCTTGTTCTTAG+TGG | 0.391158 | 1.2:+59592192 | MS.gene40799:CDS |
| TAGAGACGGGGATCGGGATA+AGG | 0.391367 | 1.2:+59583419 | MS.gene40799:CDS |
| CAGAGATGGAAGAATTTGTC+TGG | 0.392803 | 1.2:+59590183 | MS.gene40799:CDS |
| AGAGACGGGGATCGGGATAA+GGG | 0.393058 | 1.2:+59583420 | MS.gene40799:CDS |
| GTCTCTTCAGGATTGGGTAT+TGG | 0.393267 | 1.2:+59589786 | MS.gene40799:CDS |
| TTGAGAGGACAGATGAGTTT+GGG | 0.399880 | 1.2:+59590971 | MS.gene40799:CDS |
| ACCTGTTCCCGTTGAGGAAA+AGG | 0.405531 | 1.2:+59590675 | MS.gene40799:CDS |
| AAGGTCTTCAAAGTTATTAG+TGG | 0.406255 | 1.2:-59589634 | None:intergenic |
| ATTCTCTCCACAGACATTGA+TGG | 0.408602 | 1.2:-59592144 | None:intergenic |
| TTTCAGGTTGAGCACTTTCT+GGG | 0.410725 | 1.2:+59593915 | MS.gene40799:intron |
| TTGGGGTGCCCGAGTTTGAT+GGG | 0.412564 | 1.2:-59593974 | None:intergenic |
| GGAGTAAAGATGGGAAGGTA+AGG | 0.416870 | 1.2:+59583181 | MS.gene40799:CDS |
| TCATCAACATTCTCATTACT+AGG | 0.420075 | 1.2:-59590113 | None:intergenic |
| ACTTAAAGAAAGTGTTGAAT+GGG | 0.421632 | 1.2:+59590858 | MS.gene40799:CDS |
| AGAAGGATCGAGGTAAGGAT+AGG | 0.423995 | 1.2:+59583262 | MS.gene40799:CDS |
| GTCCCTAATACGTTCCCTTC+CGG | 0.426137 | 1.2:-59583142 | None:intergenic |
| ACGGCTAGCTCTTAAGAAAC+AGG | 0.428175 | 1.2:+59590037 | MS.gene40799:CDS |
| AGGGATAGGGAGAGGGATAA+GGG | 0.428467 | 1.2:+59583360 | MS.gene40799:CDS |
| AAAGATAGGTCAAGGGATAG+AGG | 0.428588 | 1.2:+59583483 | MS.gene40799:CDS |
| CAGGAAGAGAAAGGAGCATC+TGG | 0.430055 | 1.2:+59590056 | MS.gene40799:CDS |
| AAGTTATAGAGACGGGGATC+GGG | 0.431832 | 1.2:+59583413 | MS.gene40799:CDS |
| AAGAGACAGCTTCAGCTTCA+AGG | 0.432503 | 1.2:-59589770 | None:intergenic |
| CAGCTCCGGAGAAGGTTAAC+TGG | 0.435037 | 1.2:+59589606 | MS.gene40799:intron |
| CTCATTACTAGGATTTAAGC+TGG | 0.437116 | 1.2:-59590102 | None:intergenic |
| AGCGCGAGAAACATAGAGAT+AGG | 0.437404 | 1.2:+59583388 | MS.gene40799:CDS |
| GATGAAAGAGGAAGATTCTC+AGG | 0.440994 | 1.2:+59589132 | MS.gene40799:CDS |
| CAAAGATGAGCAAGAAAGAT+TGG | 0.443784 | 1.2:+59589848 | MS.gene40799:CDS |
| GTATTGGTGACCTTGGTTCT+CGG | 0.444155 | 1.2:+59589802 | MS.gene40799:CDS |
| ATTATCCGAAAGGCTTCCTT+AGG | 0.449178 | 1.2:-59592015 | None:intergenic |
| CTTAGTGGTCATGTTAAAGC+AGG | 0.455633 | 1.2:+59592207 | MS.gene40799:CDS |
| GGATAAGAAGGATCGAGGTA+AGG | 0.457944 | 1.2:+59583257 | MS.gene40799:CDS |
| AGGCTGATAGAGAGAAAGAT+AGG | 0.458740 | 1.2:+59583469 | MS.gene40799:CDS |
| GAAGCTGTCTCTTCAGGATT+GGG | 0.462236 | 1.2:+59589780 | MS.gene40799:CDS |
| TCTCATAAGTTCCATGGTAA+AGG | 0.463591 | 1.2:+59592039 | MS.gene40799:CDS |
| CTCGGATACCCCATCAAACT+CGG | 0.463730 | 1.2:+59593965 | MS.gene40799:CDS |
| CTGCTTTAGCATAAGCAGTC+TGG | 0.464188 | 1.2:-59589896 | None:intergenic |
| GGTTTCTGAGGATGTGGAGA+AGG | 0.464685 | 1.2:+59583110 | MS.gene40799:CDS |
| GCTTCATGTATAGTTTCATC+AGG | 0.467867 | 1.2:-59590781 | None:intergenic |
| GATAGGGAAAGTTATAGAGA+CGG | 0.468286 | 1.2:+59583405 | MS.gene40799:CDS |
| GAGAAGGAGAGGAGTAAAGA+TGG | 0.469841 | 1.2:+59583171 | MS.gene40799:CDS |
| ACAGTTGAGAAAGATCTTCC+TGG | 0.470057 | 1.2:+59593208 | MS.gene40799:CDS |
| AGATAAGATTAGAGAGGAGA+GGG | 0.473486 | 1.2:+59583446 | MS.gene40799:CDS |
| CAGCTTATCTTTCTTCCGTA+AGG | 0.475516 | 1.2:-59589736 | None:intergenic |
| AGAAGACTAGGGATAGGGAG+AGG | 0.476093 | 1.2:+59583352 | MS.gene40799:CDS |
| TGAAGCTGTCTCTTCAGGAT+TGG | 0.476525 | 1.2:+59589779 | MS.gene40799:CDS |
| GGAAAGAGAAGACTAGGGAT+AGG | 0.477142 | 1.2:+59583346 | MS.gene40799:CDS |
| TCTTCCTCTGCTTTAACATA+CGG | 0.477570 | 1.2:-59589954 | None:intergenic |
| GCTGTAGGGAAAGGACTGTC+TGG | 0.480931 | 1.2:+59590805 | MS.gene40799:CDS |
| TAAGATTAGAGAGGAGAGGG+AGG | 0.480961 | 1.2:+59583449 | MS.gene40799:CDS |
| AACCACCAGTTAACCTTCTC+CGG | 0.481606 | 1.2:-59589611 | None:intergenic |
| CATGAGGAAGATTATGAATC+GGG | 0.482629 | 1.2:+59583519 | MS.gene40799:CDS |
| ACTTCCAAAATATGATGATC+CGG | 0.482727 | 1.2:+59588989 | MS.gene40799:CDS |
| AGAGGGCGCGAGAGAAGGAG+AGG | 0.484500 | 1.2:+59583322 | MS.gene40799:CDS |
| ATGAAAACATCTTCACCATC+TGG | 0.487004 | 1.2:-59590634 | None:intergenic |
| ATGCTTGAAAATGTGGAAAT+CGG | 0.489731 | 1.2:+59588772 | MS.gene40799:CDS |
| AAAGTTATAGAGACGGGGAT+CGG | 0.490467 | 1.2:+59583412 | MS.gene40799:CDS |
| CAAATTCTTCCATCTCTGTA+AGG | 0.491825 | 1.2:-59590178 | None:intergenic |
| CACTTAAAGAAAGTGTTGAA+TGG | 0.492309 | 1.2:+59590857 | MS.gene40799:CDS |
| CAATGTCTGTGGAGAGAATG+AGG | 0.496086 | 1.2:+59592148 | MS.gene40799:CDS |
| GGAGAGGAGTAAAGATGGGA+AGG | 0.496359 | 1.2:+59583176 | MS.gene40799:CDS |
| TCATGAGGAAGATTATGAAT+CGG | 0.496836 | 1.2:+59583518 | MS.gene40799:CDS |
| GGATTGGGTATTGGTGACCT+TGG | 0.498503 | 1.2:+59589795 | MS.gene40799:CDS |
| CACATCCTCAGAAACCCTCT+TGG | 0.499353 | 1.2:-59583103 | None:intergenic |
| CATTGATATGCTTGAAAATG+TGG | 0.500350 | 1.2:+59588765 | MS.gene40799:CDS |
| TTGCTTCCAGTTGACTCCTA+AGG | 0.501772 | 1.2:+59591999 | MS.gene40799:intron |
| GGGCGCGAGAGAAGGAGAGG+GGG | 0.502803 | 1.2:+59583325 | MS.gene40799:CDS |
| GGATGTTGGTAAACATGAAA+AGG | 0.502978 | 1.2:+59583584 | MS.gene40799:CDS |
| CCGAGGTAAAGACCGGGATC+AGG | 0.507658 | 1.2:+59583080 | MS.gene40799:CDS |
| TAAAAGCCGTAAGCTTGAAA+AGG | 0.508214 | 1.2:+59587589 | MS.gene40799:CDS |
| TAGGGAGCGTGAGAAAGATA+GGG | 0.508489 | 1.2:+59583281 | MS.gene40799:CDS |
| TTCTGGACGAAGTAATTTGG+AGG | 0.508522 | 1.2:-59589925 | None:intergenic |
| CAAGTAAAGCAATTGCTTGA+GGG | 0.509285 | 1.2:-59590079 | None:intergenic |
| ATGATGATGATGGGGTAGAT+AGG | 0.509998 | 1.2:+59583010 | MS.gene40799:CDS |
| AGCATAGGTGTCAAGCCTCC+AGG | 0.512212 | 1.2:-59593226 | None:intergenic |
| CGAGAGGGAGAGGGATAAGA+AGG | 0.512644 | 1.2:+59583245 | MS.gene40799:CDS |
| TGACTCCTAAGGAAGCCTTT+CGG | 0.513771 | 1.2:+59592010 | MS.gene40799:CDS |
| GAAGGATCGAGGTAAGGATA+GGG | 0.514848 | 1.2:+59583263 | MS.gene40799:CDS |
| AGGATCACCGAGGTAAAGAC+CGG | 0.515246 | 1.2:+59583073 | MS.gene40799:CDS |
| GGATAGGAAGAAGAGTGATA+AGG | 0.517334 | 1.2:+59583053 | MS.gene40799:CDS |
| AATCAATCAAGATGATAAAG+AGG | 0.517912 | 1.2:+59583614 | MS.gene40799:CDS |
| ATACCTTTCCAGATGAAGTA+AGG | 0.520565 | 1.2:-59589653 | None:intergenic |
| CTTAAGAAACAGGAAGAGAA+AGG | 0.520659 | 1.2:+59590047 | MS.gene40799:CDS |
| AGATGGGAAGGTAAGGGAGA+GGG | 0.520666 | 1.2:+59583188 | MS.gene40799:CDS |
| CAGCAAACCTCTTCAGCAGC+CGG | 0.520854 | 1.2:-59589008 | None:intergenic |
| GTTGGGATTGTAGAGGATGA+CGG | 0.524942 | 1.2:+59590916 | MS.gene40799:CDS |
| TAGTGAGAGGGCGCGAGAGA+AGG | 0.527720 | 1.2:+59583317 | MS.gene40799:CDS |
| CAAACTAGTGACCCGAAAAG+TGG | 0.527957 | 1.2:+59593178 | MS.gene40799:CDS |
| GAAGACTAGGGATAGGGAGA+GGG | 0.529777 | 1.2:+59583353 | MS.gene40799:CDS |
| AAACCCTCTTGGCCTGATCC+CGG | 0.530185 | 1.2:-59583092 | None:intergenic |
| AGAGACAGCTTCAGCTTCAA+GGG | 0.531012 | 1.2:-59589769 | None:intergenic |
| GGTTTAACTTTGGATGAAAG+AGG | 0.531100 | 1.2:+59589120 | MS.gene40799:CDS |
| AAGATGGGAAGGTAAGGGAG+AGG | 0.531287 | 1.2:+59583187 | MS.gene40799:CDS |
| CCTATTAACAGCTCCGGAGA+AGG | 0.531576 | 1.2:+59589598 | MS.gene40799:intron |
| CCTGATCCCGGTCTTTACCT+CGG | 0.536771 | 1.2:-59583080 | None:intergenic |
| CAAGAGGGTTTCTGAGGATG+TGG | 0.537011 | 1.2:+59583104 | MS.gene40799:CDS |
| GCAAGTAAAGCAATTGCTTG+AGG | 0.537473 | 1.2:-59590080 | None:intergenic |
| TAGGGAGAGGGATAAGGGAA+AGG | 0.537811 | 1.2:+59583365 | MS.gene40799:CDS |
| GAAAGAGCGCGAGAGGGAGA+GGG | 0.538803 | 1.2:+59583236 | MS.gene40799:CDS |
| GAAAGATAGGGAGATTGAGA+AGG | 0.539311 | 1.2:+59583293 | MS.gene40799:CDS |
| ATAGAGAGAAAGATAGGTCA+AGG | 0.540044 | 1.2:+59583475 | MS.gene40799:CDS |
| ATAATTTCTCATAAGTTCCA+TGG | 0.540301 | 1.2:+59592033 | MS.gene40799:CDS |
| TATTAGGGACGAGCGCGAGA+AGG | 0.543454 | 1.2:+59583155 | MS.gene40799:CDS |
| ATCAATCAAGATGATAAAGA+GGG | 0.543685 | 1.2:+59583615 | MS.gene40799:CDS |
| GGGACGAGCGCGAGAAGGAG+AGG | 0.543991 | 1.2:+59583160 | MS.gene40799:CDS |
| GAAAGAGAAGACTAGGGATA+GGG | 0.544404 | 1.2:+59583347 | MS.gene40799:CDS |
| GAGTAAAGATGGGAAGGTAA+GGG | 0.547616 | 1.2:+59583182 | MS.gene40799:CDS |
| AAGATAAGATTAGAGAGGAG+AGG | 0.548711 | 1.2:+59583445 | MS.gene40799:CDS |
| CTATACATGAAGCTGCTGTA+GGG | 0.550209 | 1.2:+59590791 | MS.gene40799:CDS |
| GAGGGCGCGAGAGAAGGAGA+GGG | 0.550566 | 1.2:+59583323 | MS.gene40799:CDS |
| GGAGGCTTGACACCTATGCT+TGG | 0.551518 | 1.2:+59593229 | MS.gene40799:CDS |
| AGAGATGGAAGAATTTGTCT+GGG | 0.551797 | 1.2:+59590184 | MS.gene40799:CDS |
| AGGGCGCGAGAGAAGGAGAG+GGG | 0.552163 | 1.2:+59583324 | MS.gene40799:CDS |
| GAGAGGGATAAGAAGGATCG+AGG | 0.552422 | 1.2:+59583252 | MS.gene40799:CDS |
| TCATCATAATGCTCCCTCAC+AGG | 0.554296 | 1.2:-59582994 | None:intergenic |
| AGGGAGCATTATGATGATGA+TGG | 0.554806 | 1.2:+59583000 | MS.gene40799:CDS |
| ACTATACATGAAGCTGCTGT+AGG | 0.558051 | 1.2:+59590790 | MS.gene40799:CDS |
| CAAGGTGGTCCTTACAGAGA+TGG | 0.558634 | 1.2:+59590169 | MS.gene40799:CDS |
| CATGAAGCTGCTGTAGGGAA+AGG | 0.559161 | 1.2:+59590796 | MS.gene40799:CDS |
| AAAAGGAAGACGAGGCTGGT+GGG | 0.559181 | 1.2:+59590692 | MS.gene40799:CDS |
| AGATTGAGAAGGATAGTGAG+AGG | 0.561341 | 1.2:+59583304 | MS.gene40799:CDS |
| AGGACCTGGCAAAATGAAGC+AGG | 0.561387 | 1.2:+59592059 | MS.gene40799:CDS |
| GAGGAAAAGGAAGACGAGGC+TGG | 0.562516 | 1.2:+59590688 | MS.gene40799:CDS |
| GATGATCAAAATGCTGCAGC+TGG | 0.562657 | 1.2:+59590131 | MS.gene40799:CDS |
| TATCATACAGATCACCTGGC+GGG | 0.562738 | 1.2:+59588558 | MS.gene40799:intron |
| AGGAAGTAGAAAGGCTCATG+AGG | 0.563110 | 1.2:+59583503 | MS.gene40799:CDS |
| CTTACGGAAGAAAGATAAGC+TGG | 0.563251 | 1.2:+59589737 | MS.gene40799:CDS |
| AGACCTTACTTCATCTGGAA+AGG | 0.564865 | 1.2:+59589650 | MS.gene40799:CDS |
| TGATGATCCGGCTGCTGAAG+AGG | 0.565468 | 1.2:+59589001 | MS.gene40799:CDS |
| ACCTATGCTTGGTGATCGGA+AGG | 0.565500 | 1.2:+59593240 | MS.gene40799:CDS |
| TAGATAGGTCTAGCAGGCAT+AGG | 0.565609 | 1.2:+59583025 | MS.gene40799:CDS |
| ATGGGGTAGATAGGTCTAGC+AGG | 0.565906 | 1.2:+59583019 | MS.gene40799:CDS |
| GCGCGAGAAACATAGAGATA+GGG | 0.566963 | 1.2:+59583389 | MS.gene40799:CDS |
| AAAAGGAGATTCACATTGAG+AGG | 0.568087 | 1.2:+59590956 | MS.gene40799:CDS |
| AACAATCTGAGATTTCATCA+TGG | 0.568465 | 1.2:+59587561 | MS.gene40799:CDS |
| AGAAGGAGAGGAGTAAAGAT+GGG | 0.571494 | 1.2:+59583172 | MS.gene40799:CDS |
| TGGGGTCTTCACATTGATGA+AGG | 0.572199 | 1.2:+59590203 | MS.gene40799:CDS |
| CTTATGAGAAATTATCCGAA+AGG | 0.572925 | 1.2:-59592025 | None:intergenic |
| TAGGACAACATCGCAGTAGA+GGG | 0.574935 | 1.2:+59587755 | MS.gene40799:intron |
| GGGGAAAGATAAGATTAGAG+AGG | 0.575422 | 1.2:+59583440 | MS.gene40799:CDS |
| TCAGAAGCACGTAGGCCAGA+TGG | 0.575661 | 1.2:+59590619 | MS.gene40799:intron |
| GAAAAGAGAGACGAGGATGT+TGG | 0.576723 | 1.2:+59583570 | MS.gene40799:CDS |
| GTCTAGCAGGCATAGGAGCA+AGG | 0.577123 | 1.2:+59583032 | MS.gene40799:CDS |
| AAAAGCTGAACAATCAAGCT+CGG | 0.579635 | 1.2:+59593947 | MS.gene40799:CDS |
| ATCATACAGATCACCTGGCG+GGG | 0.582643 | 1.2:+59588559 | MS.gene40799:intron |
| CAAATTGGTTGGGATTGTAG+AGG | 0.583891 | 1.2:+59590909 | MS.gene40799:CDS |
| ATAGAGAGAAAGAGCGCGAG+AGG | 0.585070 | 1.2:+59583229 | MS.gene40799:CDS |
| AAGGGATAGAGGAAGTAGAA+AGG | 0.586590 | 1.2:+59583494 | MS.gene40799:CDS |
| GGGAGCATTATGATGATGAT+GGG | 0.586853 | 1.2:+59583001 | MS.gene40799:CDS |
| AAGTTCCATGGTAAAGGACC+TGG | 0.587246 | 1.2:+59592045 | MS.gene40799:CDS |
| CTTGACAAAGTTGCGGAAGG+TGG | 0.587424 | 1.2:+59588600 | MS.gene40799:CDS |
| CACCTTCCGCAACTTTGTCA+AGG | 0.591120 | 1.2:-59588599 | None:intergenic |
| TGACACCTATGCTTGGTGAT+CGG | 0.591348 | 1.2:+59593236 | MS.gene40799:CDS |
| GAAGGAGAGAGGTTCCGGAA+GGG | 0.595236 | 1.2:+59583128 | MS.gene40799:CDS |
| GCAGGCATAGGAGCAAGGAT+AGG | 0.595960 | 1.2:+59583037 | MS.gene40799:CDS |
| TAGAGAGAAAGATAGGTCAA+GGG | 0.596930 | 1.2:+59583476 | MS.gene40799:CDS |
| ATAGGACAACATCGCAGTAG+AGG | 0.598772 | 1.2:+59587754 | MS.gene40799:intron |
| TGAATGGGGTGGCAGAAACA+TGG | 0.599175 | 1.2:+59590873 | MS.gene40799:CDS |
| TGACCACTAAGAACAAGATA+GGG | 0.600379 | 1.2:-59592195 | None:intergenic |
| GCAGCCCAACTCAGAGGACA+AGG | 0.600396 | 1.2:+59590747 | MS.gene40799:CDS |
| TCATGGCCTTGACAAAGTTG+CGG | 0.601477 | 1.2:+59588593 | MS.gene40799:CDS |
| AGCTGAAAAGAGACTTGAAG+AGG | 0.601720 | 1.2:+59589158 | MS.gene40799:CDS |
| TGGGGTGCCCGAGTTTGATG+GGG | 0.601959 | 1.2:-59593973 | None:intergenic |
| AGAGGCACCTGTTCCCGTTG+AGG | 0.602387 | 1.2:+59590669 | MS.gene40799:CDS |
| AGGAAGACGAGGCTGGTGGG+TGG | 0.603415 | 1.2:+59590695 | MS.gene40799:CDS |
| ATATCACCATCAGCAAGTAT+GGG | 0.605185 | 1.2:-59588651 | None:intergenic |
| TGAATATCATACAGATCACC+TGG | 0.606237 | 1.2:+59588554 | MS.gene40799:intron |
| GTTCAATGATGACCCCTCCT+CGG | 0.607020 | 1.2:+59588956 | MS.gene40799:CDS |
| GAGAGAGGATTCTCCTGTGA+GGG | 0.607534 | 1.2:+59582981 | MS.gene40799:CDS |
| GAAAAGGAAGACGAGGCTGG+TGG | 0.608350 | 1.2:+59590691 | MS.gene40799:CDS |
| GAGGATGTGGAGAAGGAGAG+AGG | 0.609686 | 1.2:+59583117 | MS.gene40799:CDS |
| GCTGATGGTGATATTAATGA+AGG | 0.610021 | 1.2:+59588660 | MS.gene40799:CDS |
| CTGACAGGATGAAAGAAACA+AGG | 0.610836 | 1.2:+59587531 | MS.gene40799:intron |
| GAGACGGGGATCGGGATAAG+GGG | 0.611335 | 1.2:+59583421 | MS.gene40799:CDS |
| GGCCTTGACAAAGTTGCGGA+AGG | 0.611991 | 1.2:+59588597 | MS.gene40799:CDS |
| TAGAGAGAAAGAGCGCGAGA+GGG | 0.612955 | 1.2:+59583230 | MS.gene40799:CDS |
| GATTGTAGAGGATGACGGAA+AGG | 0.619258 | 1.2:+59590921 | MS.gene40799:CDS |
| TGGAGAGTCAAAAGAAAACA+AGG | 0.619539 | 1.2:+59590151 | MS.gene40799:CDS |
| TCGCATCTTTCCGAGAACCA+AGG | 0.619952 | 1.2:-59589812 | None:intergenic |
| AGAAGGAGAGAGGTTCCGGA+AGG | 0.621664 | 1.2:+59583127 | MS.gene40799:CDS |
| AGACCGGGATCAGGCCAAGA+GGG | 0.622470 | 1.2:+59583089 | MS.gene40799:CDS |
| AGATACACCATCAATGTCTG+TGG | 0.623227 | 1.2:+59592137 | MS.gene40799:CDS |
| TCAGGCCAAGAGGGTTTCTG+AGG | 0.624361 | 1.2:+59583098 | MS.gene40799:CDS |
| TCGGATACCCCATCAAACTC+GGG | 0.624838 | 1.2:+59593966 | MS.gene40799:CDS |
| GATCAGCCCATACTTGCTGA+TGG | 0.625072 | 1.2:+59588645 | MS.gene40799:CDS |
| TTCGTGAGAATAGTAATCTG+AGG | 0.627105 | 1.2:-59589676 | None:intergenic |
| TCATACAGATCACCTGGCGG+GGG | 0.629933 | 1.2:+59588560 | MS.gene40799:intron |
| ATCTCCGTATGTTAAAGCAG+AGG | 0.631715 | 1.2:+59589950 | MS.gene40799:CDS |
| CGTTGAGGAAAAGGAAGACG+AGG | 0.632694 | 1.2:+59590684 | MS.gene40799:CDS |
| GATTGAGAAGGATAGTGAGA+GGG | 0.634308 | 1.2:+59583305 | MS.gene40799:CDS |
| TTGAAACTGCTTAAAGATCG+AGG | 0.640832 | 1.2:+59590832 | MS.gene40799:CDS |
| TTAGTGGTCATGTTAAAGCA+GGG | 0.644194 | 1.2:+59592208 | MS.gene40799:CDS |
| ATCACGTTACGATGAGAGAG+AGG | 0.645344 | 1.2:+59582966 | MS.gene40799:CDS |
| AATCCTTAGAGAAAGCTAGA+CGG | 0.655105 | 1.2:+59590018 | MS.gene40799:CDS |
| CAATCAAGATGATAAAGAGG+GGG | 0.657564 | 1.2:+59583617 | MS.gene40799:CDS |
| TTTCATGCAAGATGACGAAG+AGG | 0.660186 | 1.2:+59590651 | MS.gene40799:CDS |
| AAAGAAAGTGTTGAATGGGG+TGG | 0.660707 | 1.2:+59590862 | MS.gene40799:CDS |
| AATGTCTGTGGAGAGAATGA+GGG | 0.660859 | 1.2:+59592149 | MS.gene40799:CDS |
| ACCTTCCGATCACCAAGCAT+AGG | 0.661707 | 1.2:-59593241 | None:intergenic |
| GCCCAACTCAGAGGACAAGG+AGG | 0.665613 | 1.2:+59590750 | MS.gene40799:CDS |
| AGAGAGAGGATTCTCCTGTG+AGG | 0.666974 | 1.2:+59582980 | MS.gene40799:CDS |
| CTTAAAGAAAGTGTTGAATG+GGG | 0.668377 | 1.2:+59590859 | MS.gene40799:CDS |
| TCAATCAAGATGATAAAGAG+GGG | 0.671596 | 1.2:+59583616 | MS.gene40799:CDS |
| GGATCACCGAGGTAAAGACC+GGG | 0.681500 | 1.2:+59583074 | MS.gene40799:CDS |
| TAGGGAAAGTTATAGAGACG+GGG | 0.682428 | 1.2:+59583407 | MS.gene40799:CDS |
| CTCCGGAGAAGGTTAACTGG+TGG | 0.684514 | 1.2:+59589609 | MS.gene40799:CDS |
| AAGACCGGGATCAGGCCAAG+AGG | 0.688143 | 1.2:+59583088 | MS.gene40799:CDS |
| AGACGAGCAGCCCAACTCAG+AGG | 0.691308 | 1.2:+59590741 | MS.gene40799:CDS |
| GTTCTCGGAAAGATGCGAAG+AGG | 0.696193 | 1.2:+59589817 | MS.gene40799:CDS |
| GTTGAGAAAGATCTTCCTGG+AGG | 0.715658 | 1.2:+59593211 | MS.gene40799:CDS |
| GGAGCATTATGATGATGATG+GGG | 0.716741 | 1.2:+59583002 | MS.gene40799:CDS |
| AGTAGAGGGAAGTGACGACG+AGG | 0.721519 | 1.2:+59587769 | MS.gene40799:CDS |
| GAGATGGAAGAATTTGTCTG+GGG | 0.726459 | 1.2:+59590185 | MS.gene40799:CDS |
| TTACCATGAAAAGAGAGACG+AGG | 0.737984 | 1.2:+59583563 | MS.gene40799:CDS |
| ATATCATACAGATCACCTGG+CGG | 0.738427 | 1.2:+59588557 | MS.gene40799:intron |
| GAGGATACGACACATCACAC+TGG | 0.747563 | 1.2:+59587788 | MS.gene40799:CDS |
| AAGAGTGATAAGGATCACCG+AGG | 0.771681 | 1.2:+59583063 | MS.gene40799:CDS |
| AGAGTCAAAAGAAAACAAGG+TGG | 0.787772 | 1.2:+59590154 | MS.gene40799:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59582946 | 59594013 | 59582946 | ID=MS.gene40799 |
| chr1.2 | mRNA | 59582946 | 59594013 | 59582946 | ID=MS.gene40799.t1;Parent=MS.gene40799 |
| chr1.2 | exon | 59582946 | 59583688 | 59582946 | ID=MS.gene40799.t1.exon1;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59582946 | 59583688 | 59582946 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59587538 | 59587649 | 59587538 | ID=MS.gene40799.t1.exon2;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59587538 | 59587649 | 59587538 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59587758 | 59587809 | 59587758 | ID=MS.gene40799.t1.exon3;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59587758 | 59587809 | 59587758 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59588568 | 59588681 | 59588568 | ID=MS.gene40799.t1.exon4;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59588568 | 59588681 | 59588568 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59588764 | 59588860 | 59588764 | ID=MS.gene40799.t1.exon5;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59588764 | 59588860 | 59588764 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59588956 | 59589022 | 59588956 | ID=MS.gene40799.t1.exon6;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59588956 | 59589022 | 59588956 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59589120 | 59589179 | 59589120 | ID=MS.gene40799.t1.exon7;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59589120 | 59589179 | 59589120 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59589609 | 59590224 | 59589609 | ID=MS.gene40799.t1.exon8;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59589609 | 59590224 | 59589609 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59590623 | 59590999 | 59590623 | ID=MS.gene40799.t1.exon9;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59590623 | 59590999 | 59590623 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59592009 | 59592229 | 59592009 | ID=MS.gene40799.t1.exon10;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59592009 | 59592229 | 59592009 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59593177 | 59593261 | 59593177 | ID=MS.gene40799.t1.exon11;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59593177 | 59593261 | 59593177 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| chr1.2 | exon | 59593921 | 59594013 | 59593921 | ID=MS.gene40799.t1.exon12;Parent=MS.gene40799.t1 |
| chr1.2 | CDS | 59593921 | 59594013 | 59593921 | ID=cds.MS.gene40799.t1;Parent=MS.gene40799.t1 |
| Gene Sequence |
| Protein sequence |
