AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73498

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73498.t1 MTR_5g093560 96.612 915 22 2 1 915 1 906 0.0 1773
MS.gene73498.t1 MTR_5g093560 96.485 825 20 2 91 915 14 829 0.0 1586
MS.gene73498.t1 MTR_5g093560 96.606 825 19 2 91 915 23 838 0.0 1585
MS.gene73498.t1 MTR_5g093560 96.711 760 16 2 156 915 1 751 0.0 1455
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73498.t1 AT5G55100 43.113 951 393 24 1 915 1 839 0.0 579
MS.gene73498.t1 AT5G55100 43.113 951 393 24 1 915 1 839 0.0 578
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 3.64e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 3.64e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 3.64e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 3.64e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 3.64e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 4.60e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 4.60e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 4.60e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 4.60e-108 348
MS.gene73498.t1 AT5G55100 38.070 767 328 23 183 915 1 654 4.60e-108 348

Find 205 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACATGGCTCTAATTT+TGG 0.118147 5.2:-78665772 None:intergenic
TTCCTCCTCTTCATGTTTAC+TGG 0.123621 5.2:-78665085 None:intergenic
CCACCGAGCTCTGGACTTTC+AGG 0.131202 5.2:+78664862 MS.gene73498:CDS
AGATGACTATTGGCAATTTA+AGG 0.201652 5.2:+78664380 MS.gene73498:CDS
TCATCTTGAATTTCTCTTTC+CGG 0.219255 5.2:-78664363 None:intergenic
ACAGGAGTTGCCCCAGATTC+AGG 0.224788 5.2:+78663489 MS.gene73498:CDS
AGTTTGAGATTGGCTGTCTT+TGG 0.250807 5.2:-78664425 None:intergenic
TCTTTGCTTGGATCTGTCTA+TGG 0.271680 5.2:+78663219 MS.gene73498:CDS
GATCCGCTGGAGTGTGCTTC+TGG 0.286817 5.2:-78664306 None:intergenic
GCACCATTAGACCCTGAATC+TGG 0.291563 5.2:-78663501 None:intergenic
TGAGTCTGTTCTTGCTGAAC+AGG 0.291601 5.2:+78663650 MS.gene73498:CDS
CAAGGAGATAATCCAACATT+TGG 0.295832 5.2:+78663051 MS.gene73498:CDS
AGAAATGCTTCCATCCTTCT+TGG 0.299556 5.2:-78663373 None:intergenic
GTTTGTTTAGATAATGATTC+AGG 0.315306 5.2:+78662304 MS.gene73498:intron
GACTGATTCCGCTTTATAAC+AGG 0.329088 5.2:-78663426 None:intergenic
GCGAGGTTGGGCGGGCTAGC+AGG 0.329386 5.2:+78665667 MS.gene73498:CDS
CTATTCTTCAGGCAGCTACT+AGG 0.346882 5.2:+78664479 MS.gene73498:CDS
AGAGGCAGAGTTGGAGGAGG+GGG 0.351243 5.2:+78665614 MS.gene73498:CDS
TGAAGTAAGCTTTCTGGTAC+TGG 0.351760 5.2:-78662436 None:intergenic
CGATTAGAAGGCAGAAGAAA+TGG 0.352536 5.2:-78663693 None:intergenic
ATCTGATGTAGCTTCTCGTT+TGG 0.354189 5.2:-78662961 None:intergenic
TCAGAAACATTAGTTACTTC+AGG 0.356338 5.2:-78665738 None:intergenic
AGATTATGAAGTAAGCTTTC+TGG 0.357635 5.2:-78662442 None:intergenic
CACCGGAAGCTCTCGTTGAT+TGG 0.358199 5.2:+78659796 MS.gene73498:CDS
CGTTTGAGGCGAGGAGGAAT+TGG 0.360029 5.2:-78659867 None:intergenic
CCCTCAGAATAATTTCTGAT+TGG 0.369800 5.2:-78663023 None:intergenic
TCTGCAATAGCCTTGGCAAC+TGG 0.375868 5.2:-78664670 None:intergenic
GCTGCTACTTCTGCATCATC+AGG 0.381682 5.2:+78663318 MS.gene73498:CDS
GAGAAATTCAAGATGACTAT+TGG 0.382253 5.2:+78664370 MS.gene73498:CDS
TAGTTCAATCTTAGATGTAC+TGG 0.382480 5.2:-78663547 None:intergenic
TTCCAATCAACGAGAGCTTC+CGG 0.387725 5.2:-78659798 None:intergenic
CAGCTACTAGGGGTATTAAA+AGG 0.387895 5.2:+78664491 MS.gene73498:CDS
AGCAGCCGCAGCTATTCTTC+AGG 0.392106 5.2:+78664468 MS.gene73498:CDS
AGAAAGCTTACTTCATAATC+TGG 0.393618 5.2:+78662444 MS.gene73498:CDS
ATGCAGACAGGGACAGAAAC+AGG 0.401823 5.2:+78665223 MS.gene73498:CDS
GTTTGAGATTGGCTGTCTTT+GGG 0.407276 5.2:-78664424 None:intergenic
TCTTTCCGGTCCATGTCATT+TGG 0.407743 5.2:-78664349 None:intergenic
TCTGTTGAGCCACCGAGCTC+TGG 0.414659 5.2:+78664853 MS.gene73498:CDS
AGTGGTAATGGTCCAGGCCT+TGG 0.420560 5.2:+78664544 MS.gene73498:CDS
CAAAATTAGAGCCATGTTGA+TGG 0.424496 5.2:+78665773 MS.gene73498:CDS
GCCCCAGATTCAGGGTCTAA+TGG 0.425369 5.2:+78663498 MS.gene73498:CDS
CCAACGACAAGTATTCTCAT+AGG 0.427441 5.2:+78665274 MS.gene73498:CDS
TGTGGTTGTTCTTCATGAAT+CGG 0.429815 5.2:-78659969 None:intergenic
TCTGAGTTATCAGTATTGAA+TGG 0.431503 5.2:-78664940 None:intergenic
CTTTCTGGTACTGGAAAGTT+GGG 0.433946 5.2:-78662427 None:intergenic
GGAGGTGCATTGTCTTTGCT+TGG 0.435508 5.2:+78663207 MS.gene73498:CDS
GATTGGCTGTCTTTGGGAGT+TGG 0.441345 5.2:-78664418 None:intergenic
AACCGATGCAGGCTCAACTT+TGG 0.442622 5.2:+78663152 MS.gene73498:CDS
TAAGTATGATATCGATTAGA+AGG 0.444515 5.2:-78663705 None:intergenic
AGAGAGGCAGAGTTGGAGGA+GGG 0.446411 5.2:+78665612 MS.gene73498:CDS
GCTTTCTGGTACTGGAAAGT+TGG 0.447870 5.2:-78662428 None:intergenic
AAGGAGATAATCCAACATTT+GGG 0.448085 5.2:+78663052 MS.gene73498:CDS
TGCTGAAAGAGAGGCAGAGT+TGG 0.452101 5.2:+78665605 MS.gene73498:CDS
TACGGATGAAGATGATGATC+AGG 0.452690 5.2:-78663084 None:intergenic
TGCTAACTGTAGTTTGAGAT+TGG 0.455284 5.2:-78664435 None:intergenic
CACCATTAGACCCTGAATCT+GGG 0.456401 5.2:-78663500 None:intergenic
CGAGGTTGGGCGGGCTAGCA+GGG 0.456916 5.2:+78665668 MS.gene73498:CDS
CTGAATTATTCAAGTCTACA+AGG 0.458387 5.2:+78665700 MS.gene73498:CDS
GAAATCTTGCTGGTAAAGAA+AGG 0.460928 5.2:+78664902 MS.gene73498:CDS
AGTAAGGCGTCAAGTGGTAA+TGG 0.467155 5.2:+78664532 MS.gene73498:CDS
GAGAGGCAGAGTTGGAGGAG+GGG 0.468764 5.2:+78665613 MS.gene73498:CDS
TGATGTAGCTTCTCGTTTGG+AGG 0.470498 5.2:-78662958 None:intergenic
TCAGATGGAGGTTCAACAAC+AGG 0.471995 5.2:-78663570 None:intergenic
ATAATGAAAGGCGATCAAAA+AGG 0.473517 5.2:+78665046 MS.gene73498:CDS
TATTCTTCAGGCAGCTACTA+GGG 0.474651 5.2:+78664480 MS.gene73498:CDS
GAAGATGATGATCAGGCATC+AGG 0.477942 5.2:-78663077 None:intergenic
CAGGAGTTGCCCCAGATTCA+GGG 0.478057 5.2:+78663490 MS.gene73498:CDS
GCTGAGATTAGAAATCTTGC+TGG 0.478163 5.2:+78664892 MS.gene73498:CDS
TCAGGTGCAGTGAATTCATC+AGG 0.486609 5.2:+78662322 MS.gene73498:CDS
TAGCGTGTCCACTGAGACAA+AGG 0.486789 5.2:+78662378 MS.gene73498:CDS
GATGATGAGTGCGGCGTTTG+AGG 0.486900 5.2:-78659881 None:intergenic
TATGCTTTGTCTTTCTGCTC+CGG 0.487165 5.2:-78665569 None:intergenic
GTCGGGACAGGGATGCAGAC+AGG 0.487327 5.2:+78665211 MS.gene73498:CDS
AGTCAGGAGCTGGATCAAAC+AGG 0.488581 5.2:+78663186 MS.gene73498:CDS
CCACATGTGCGTTTCTCTCA+AGG 0.490342 5.2:-78663284 None:intergenic
TTTGCCGTCATCTCAACTGC+AGG 0.490397 5.2:+78664600 MS.gene73498:CDS
ATAACTATCTTTAAGTCAGA+TGG 0.491088 5.2:-78663585 None:intergenic
GATTAGAAGGCAGAAGAAAT+GGG 0.493049 5.2:-78663692 None:intergenic
CATGTTTACTGGATCTTGAA+CGG 0.493859 5.2:-78665074 None:intergenic
CCACCATCACTTCCAAGGCC+TGG 0.498224 5.2:-78664556 None:intergenic
TGCTTCTGTTCCAGTTGCCA+AGG 0.499747 5.2:+78664660 MS.gene73498:CDS
TGAAAGAGAGGCAGAGTTGG+AGG 0.499968 5.2:+78665608 MS.gene73498:CDS
AGTCACAAGTAAGCGAGGTT+GGG 0.499970 5.2:+78665655 MS.gene73498:CDS
ACCTACCAAATGACATGGAC+CGG 0.500293 5.2:+78664344 MS.gene73498:CDS
AAAGATGACAAAACCGATGC+AGG 0.500690 5.2:+78663141 MS.gene73498:CDS
AAGAAAATAAAGAAGATACA+AGG 0.502836 5.2:+78665136 MS.gene73498:CDS
GGCTCAACAGATAAAGCTCT+TGG 0.504528 5.2:-78664841 None:intergenic
GCAATGTTTGTCAGCAAACA+TGG 0.506547 5.2:+78662997 MS.gene73498:CDS
AAGAGAGGCAGAGTTGGAGG+AGG 0.507274 5.2:+78665611 MS.gene73498:CDS
TGACGGCAAACTCCGAGAGC+TGG 0.507276 5.2:-78664587 None:intergenic
ACAAGTAAGCGAGGTTGGGC+GGG 0.509025 5.2:+78665659 MS.gene73498:CDS
CTTCACACAGAAGTCGGGAC+AGG 0.510210 5.2:+78665199 MS.gene73498:CDS
TCAACAAGAAACCTAAAATA+CGG 0.511809 5.2:-78663102 None:intergenic
AGAATACTTGTCGTTGGAGG+AGG 0.513912 5.2:-78665268 None:intergenic
ATTAGGAGGTTACCTTCTTG+TGG 0.515561 5.2:-78659987 None:intergenic
AGTTCTTCAAACTGCTGAAG+AGG 0.519694 5.2:+78663737 MS.gene73498:CDS
TCGATCTTCACACAGAAGTC+GGG 0.520051 5.2:+78665194 MS.gene73498:CDS
ACAGTCTAAGTTACAAGGCA+AGG 0.520076 5.2:+78664279 MS.gene73498:intron
GGCTATTGCAGCAGCAGGTG+AGG 0.520962 5.2:+78664699 MS.gene73498:CDS
AAATCTTGCTGGTAAAGAAA+GGG 0.523325 5.2:+78664903 MS.gene73498:CDS
CGAGATAACGTTGATGATCA+AGG 0.524860 5.2:-78659929 None:intergenic
ATCTTCAGATGCAGCCAAGA+AGG 0.525024 5.2:+78663359 MS.gene73498:CDS
AGAGGAGGAAGAAGAGGACG+AGG 0.526595 5.2:+78665098 MS.gene73498:CDS
GTCCAAAGTTGAGCCTGCAT+CGG 0.526767 5.2:-78663154 None:intergenic
CCAGGCCTTGGAAGTGATGG+TGG 0.527048 5.2:+78664556 MS.gene73498:CDS
TTTGGACAAGAATAGAAGTC+AGG 0.527933 5.2:+78663170 MS.gene73498:CDS
GCTGAACAGGATCGTGCTCA+TGG 0.531525 5.2:+78663663 MS.gene73498:CDS
GCGTCAAGTGGTAATGGTCC+AGG 0.533576 5.2:+78664538 MS.gene73498:CDS
GTGGGAATTTGTCCAGCTCT+CGG 0.534175 5.2:+78664575 MS.gene73498:CDS
TGTTTACAGTCTAAGTTACA+AGG 0.534524 5.2:+78664274 MS.gene73498:intron
AAGTCACAAGTAAGCGAGGT+TGG 0.536520 5.2:+78665654 MS.gene73498:CDS
CAAGAATAGAAGTCAGGAGC+TGG 0.537742 5.2:+78663176 MS.gene73498:CDS
TACGCGAATGTCTATGCTCA+TGG 0.538001 5.2:-78665428 None:intergenic
GGCATCAGGAACCCAAATGT+TGG 0.539081 5.2:-78663063 None:intergenic
TCCGGTCCATGTCATTTGGT+AGG 0.541588 5.2:-78664345 None:intergenic
ATGAGAATACTTGTCGTTGG+AGG 0.542787 5.2:-78665271 None:intergenic
AACAGGATCGTGCTCATGGA+AGG 0.546005 5.2:+78663667 MS.gene73498:CDS
CACAAGTAAGCGAGGTTGGG+CGG 0.550850 5.2:+78665658 MS.gene73498:CDS
AAAGTGGCTATTGCAGCAGC+AGG 0.551862 5.2:+78664694 MS.gene73498:CDS
GAACTCATAGACGGATCCGC+TGG 0.552448 5.2:-78664319 None:intergenic
TCATGAATCGGAGAAGAAGA+AGG 0.554871 5.2:-78659957 None:intergenic
ATGATCAAGGTCAGCTTCAA+CGG 0.557580 5.2:-78659916 None:intergenic
GATGTTCGTCATCTTCTCTC+CGG 0.559574 5.2:+78659843 MS.gene73498:CDS
GAAAGACAAAGCATAAGAGC+AGG 0.559960 5.2:+78665577 MS.gene73498:CDS
ATCCAGTAAACATGAAGAGG+AGG 0.560824 5.2:+78665083 MS.gene73498:CDS
TCAGATGCAGCCAAGAAGGA+TGG 0.564145 5.2:+78663363 MS.gene73498:CDS
GACTATTGGCAATTTAAGGA+AGG 0.564157 5.2:+78664384 MS.gene73498:CDS
CAACGACAAGTATTCTCATA+GGG 0.564384 5.2:+78665275 MS.gene73498:CDS
CTTCTCGACGTCATCGTGGA+GGG 0.566142 5.2:+78665391 MS.gene73498:CDS
AATTCCCACCATCACTTCCA+AGG 0.566204 5.2:-78664561 None:intergenic
AGTATTCTCATAGGGAGAGT+AGG 0.570248 5.2:+78665283 MS.gene73498:CDS
ACATGAAGAGGAGGAAGAAG+AGG 0.571410 5.2:+78665092 MS.gene73498:CDS
ATCACTGTCCTTTGTCTCAG+TGG 0.571841 5.2:-78662386 None:intergenic
CCTATGAGAATACTTGTCGT+TGG 0.572072 5.2:-78665274 None:intergenic
CAGTCTAAGTTACAAGGCAA+GGG 0.572361 5.2:+78664280 MS.gene73498:intron
CAGGTCTCATGCTGAAAGAG+AGG 0.572770 5.2:+78665596 MS.gene73498:CDS
GAGGCGAGGAGGAATTGGAC+CGG 0.573199 5.2:-78659862 None:intergenic
CTGCTACTTCTGCATCATCA+GGG 0.573669 5.2:+78663319 MS.gene73498:CDS
ATTGGCAATTTAAGGAAGGA+TGG 0.577793 5.2:+78664388 MS.gene73498:CDS
GCTGTTCGACGACGACGGCA+TGG 0.578419 5.2:+78659758 MS.gene73498:CDS
CTATGGAAATGAAGAGGATG+AGG 0.578886 5.2:+78663236 MS.gene73498:CDS
GCCAATCAGAAATTATTCTG+AGG 0.579591 5.2:+78663022 MS.gene73498:CDS
CCTTGAGAGAAACGCACATG+TGG 0.582859 5.2:+78663284 MS.gene73498:CDS
AAGATCCAGTAAACATGAAG+AGG 0.583036 5.2:+78665080 MS.gene73498:CDS
GCATGACAGCTCCTCTGAGG+AGG 0.584258 5.2:+78665305 MS.gene73498:CDS
CATGACAGCTCCTCTGAGGA+GGG 0.585607 5.2:+78665306 MS.gene73498:CDS
GTCGATCTTCACACAGAAGT+CGG 0.586547 5.2:+78665193 MS.gene73498:CDS
CCAATCAGAAATTATTCTGA+GGG 0.588348 5.2:+78663023 MS.gene73498:CDS
TTTAGTCATATGTGCTTCAG+AGG 0.590900 5.2:-78664728 None:intergenic
GGCGGCGTTCGTGAACTCAC+CGG 0.592580 5.2:+78659779 MS.gene73498:CDS
TTAAGACAGCAACTTCAGCT+AGG 0.592901 5.2:+78663460 MS.gene73498:CDS
GCCAACGACTTCGAGATCCA+TGG 0.595544 5.2:-78659724 None:intergenic
CATGAAGAACAACCACAAGA+AGG 0.597495 5.2:+78659975 MS.gene73498:CDS
GGTCCAGGCCTTGGAAGTGA+TGG 0.598727 5.2:+78664553 MS.gene73498:CDS
TCTTCTCGACGTCATCGTGG+AGG 0.603922 5.2:+78665390 MS.gene73498:CDS
TATTGCAGCAGCAGGTGAGG+CGG 0.603948 5.2:+78664702 MS.gene73498:CDS
AGACCCTGCAGTTGAGATGA+CGG 0.604995 5.2:-78664604 None:intergenic
GGAAATGAAGAGGATGAGGA+TGG 0.606153 5.2:+78663240 MS.gene73498:CDS
AAGGACAGTGATACTGACTC+TGG 0.606944 5.2:+78662397 MS.gene73498:CDS
ACCATTAGACCCTGAATCTG+GGG 0.607510 5.2:-78663499 None:intergenic
GGTTGGGCGGGCTAGCAGGG+AGG 0.607980 5.2:+78665671 MS.gene73498:CDS
CTGCCAGAAGCACACTCCAG+CGG 0.608202 5.2:+78664303 MS.gene73498:CDS
ATGTCTATGCTCATCATCAG+AGG 0.608642 5.2:-78665463 None:intergenic
AGAAAATAAAGAAGATACAA+GGG 0.609415 5.2:+78665137 MS.gene73498:CDS
TTCTGACCTACCAAATGACA+TGG 0.612916 5.2:+78664339 MS.gene73498:CDS
TTACTGTTGATAATAATGAA+AGG 0.613626 5.2:+78665034 MS.gene73498:CDS
AGTTCAATCTTAGATGTACT+GGG 0.616112 5.2:-78663546 None:intergenic
GAACCTGAAAGTCCAGAGCT+CGG 0.616412 5.2:-78664865 None:intergenic
TTCACACAGAAGTCGGGACA+GGG 0.618957 5.2:+78665200 MS.gene73498:CDS
AGATAAAAGTCACAAGTCTG+AGG 0.619109 5.2:+78664960 MS.gene73498:CDS
TCGGGACAGGGATGCAGACA+GGG 0.619397 5.2:+78665212 MS.gene73498:CDS
GTTACTTCAGGTGACTGAGA+GGG 0.621004 5.2:-78665726 None:intergenic
ACTATCTTTAAGTCAGATGG+AGG 0.622930 5.2:-78663582 None:intergenic
CGCTCTTCTCGACGTCATCG+TGG 0.626116 5.2:+78665387 MS.gene73498:CDS
CGTCGAACAGCATCGCGTGA+CGG 0.626865 5.2:-78659746 None:intergenic
TGAGTGCGGCGTTTGAGGCG+AGG 0.628823 5.2:-78659876 None:intergenic
CACGATGACGTCGAGAAGAG+CGG 0.629753 5.2:-78665386 None:intergenic
TTGCCGTCATCTCAACTGCA+GGG 0.630505 5.2:+78664601 MS.gene73498:CDS
CAGGCCTTGGAAGTGATGGT+GGG 0.634992 5.2:+78664557 MS.gene73498:CDS
ATTATTCTGAGGGTGAAACA+AGG 0.639145 5.2:+78663033 MS.gene73498:CDS
ATTCTTCAGGCAGCTACTAG+GGG 0.639195 5.2:+78664481 MS.gene73498:CDS
CTGATGATGAGCATAGTCAC+CGG 0.643482 5.2:+78665550 MS.gene73498:CDS
TGCTACTTCTGCATCATCAG+GGG 0.643605 5.2:+78663320 MS.gene73498:CDS
CTTGCTGGTAAAGAAAGGGA+AGG 0.647067 5.2:+78664907 MS.gene73498:CDS
AACTACAGTTAGCATTCATG+CGG 0.648226 5.2:+78664444 MS.gene73498:CDS
TAGGCATGACAGCTCCTCTG+AGG 0.652290 5.2:+78665302 MS.gene73498:CDS
GGTAGGTCAGAACTCATAGA+CGG 0.655742 5.2:-78664328 None:intergenic
ACATCGCAATCTGAATGCAG+AGG 0.656192 5.2:+78664633 MS.gene73498:CDS
AGCTGCCTGAAGAATAGCTG+CGG 0.660615 5.2:-78664473 None:intergenic
TCCATGGATCTCGAAGTCGT+TGG 0.661310 5.2:+78659723 None:intergenic
AGTTACTTCAGGTGACTGAG+AGG 0.662084 5.2:-78665727 None:intergenic
GCGATGCTGTTCGACGACGA+CGG 0.663625 5.2:+78659753 MS.gene73498:CDS
ATCTGTCTATGGAAATGAAG+AGG 0.664551 5.2:+78663230 MS.gene73498:CDS
GTTCGACGACGACGGCATGG+CGG 0.666203 5.2:+78659761 MS.gene73498:CDS
TGAATTATTCAAGTCTACAA+GGG 0.670470 5.2:+78665701 MS.gene73498:CDS
TCGATGCTCACCCTCCTCAG+AGG 0.670941 5.2:-78665316 None:intergenic
CTTGAGAGAAACGCACATGT+GGG 0.674979 5.2:+78663285 MS.gene73498:CDS
GTGCGGCGTTTGAGGCGAGG+AGG 0.676156 5.2:-78659873 None:intergenic
GCTTCAACGGTAGATTGCAG+CGG 0.682299 5.2:-78659903 None:intergenic
CAGGAGCTGGATCAAACAGG+AGG 0.687441 5.2:+78663189 MS.gene73498:CDS
AGACAAGTCACAAGTAAGCG+AGG 0.688184 5.2:+78665650 MS.gene73498:CDS
CCTGAAAGTCCAGAGCTCGG+TGG 0.714414 5.2:-78664862 None:intergenic
CAGACAGGGACAGAAACAGG+CGG 0.718480 5.2:+78665226 MS.gene73498:CDS
AGGGTGAGCATCGACACTTG+AGG 0.725403 5.2:+78665325 MS.gene73498:CDS
ATTGCAGCGGATGATGAGTG+CGG 0.738074 5.2:-78659890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAAATTAAAAATTTC+TGG + chr5.2:78660808-78660827 MS.gene73498:intron 10.0%
!! TAAATTTAATTGACATATAT+GGG - chr5.2:78661087-78661106 None:intergenic 10.0%
!! TTACTAAAAATTTCTAAATT+AGG - chr5.2:78664517-78664536 None:intergenic 10.0%
!!! AATAAACTTTATCAAAATTT+TGG - chr5.2:78661304-78661323 None:intergenic 10.0%
!!! TAATTTAGAAATTTTTAGTA+AGG + chr5.2:78664516-78664535 MS.gene73498:CDS 10.0%
!! CTAAATTTAATTGACATATA+TGG - chr5.2:78661088-78661107 None:intergenic 15.0%
!!! TAAAATTTTGTTAGAATTGA+AGG + chr5.2:78660150-78660169 MS.gene73498:intron 15.0%
!!! TCAATTCTAACAAAATTTTA+CGG - chr5.2:78660150-78660169 None:intergenic 15.0%
!!! TGTCAATTAAATTTAGATTT+TGG + chr5.2:78661092-78661111 MS.gene73498:intron 15.0%
!!! TTTTGATAAAGTTTATTGAA+TGG + chr5.2:78661307-78661326 MS.gene73498:intron 15.0%
!! AAAATGCAAATAAATATGAG+TGG + chr5.2:78660673-78660692 MS.gene73498:intron 20.0%
!! AAGAAAATAAAGAAGATACA+AGG + chr5.2:78665136-78665155 MS.gene73498:CDS 20.0%
!! AAGGTTTATAATGTTATTCT+CGG - chr5.2:78660893-78660912 None:intergenic 20.0%
!! AATCATTATCTAAACAAACA+CGG - chr5.2:78662303-78662322 None:intergenic 20.0%
!! AGAAAATAAAGAAGATACAA+GGG + chr5.2:78665137-78665156 MS.gene73498:CDS 20.0%
!! AGAATAACCAACATAATAAA+AGG - chr5.2:78663913-78663932 None:intergenic 20.0%
!! ATGAATATTCAAAGCAATAT+TGG + chr5.2:78664075-78664094 MS.gene73498:intron 20.0%
!! ATTATGTGTTAATTAATCTG+TGG + chr5.2:78663951-78663970 MS.gene73498:intron 20.0%
!! CCAAATAAACTAAAACAAAA+TGG - chr5.2:78662200-78662219 None:intergenic 20.0%
!! GAATAACCAACATAATAAAA+GGG - chr5.2:78663912-78663931 None:intergenic 20.0%
!! GTAGATAGTCTAATTAATAA+GGG + chr5.2:78660456-78660475 MS.gene73498:intron 20.0%
!! GTGTAATTTGATTAATTTCA+AGG + chr5.2:78664213-78664232 MS.gene73498:intron 20.0%
!! TGATTATTCAAGTATATATG+AGG + chr5.2:78662795-78662814 MS.gene73498:intron 20.0%
!! TGTAGATAGTCTAATTAATA+AGG + chr5.2:78660455-78660474 MS.gene73498:intron 20.0%
!!! AATTTTGGTTATTTTGAGTT+TGG - chr5.2:78661289-78661308 None:intergenic 20.0%
!!! CATAACACTAATTTTAAAGA+GGG - chr5.2:78662878-78662897 None:intergenic 20.0%
!!! CCATTTTGTTTTAGTTTATT+TGG + chr5.2:78662197-78662216 MS.gene73498:intron 20.0%
!!! GGATTTTTTTTTTCTTTTCA+CGG + chr5.2:78662027-78662046 MS.gene73498:intron 20.0%
!!! GGTTAAATTTTAGATTTCAT+TGG + chr5.2:78660606-78660625 MS.gene73498:intron 20.0%
!!! TTACTGTTGATAATAATGAA+AGG + chr5.2:78665034-78665053 MS.gene73498:CDS 20.0%
!!! TTTTTAATTTTTTTGTTCCC+AGG - chr5.2:78660804-78660823 None:intergenic 20.0%
! AAAAAAACTAAACACTGTCT+TGG - chr5.2:78662075-78662094 None:intergenic 25.0%
! AAAAAACTAAACACTGTCTT+GGG - chr5.2:78662074-78662093 None:intergenic 25.0%
! AAAAAGTTCCTGTTATAAAG+CGG + chr5.2:78663418-78663437 MS.gene73498:CDS 25.0%
! AAACATGAAAATCACATGAT+CGG - chr5.2:78662497-78662516 None:intergenic 25.0%
! AAATAAATATGAGTGGTAGT+GGG + chr5.2:78660680-78660699 MS.gene73498:intron 25.0%
! ACTAGAAGAATGAATGTATT+AGG - chr5.2:78660007-78660026 None:intergenic 25.0%
! AGGTTTATAATGTTATTCTC+GGG - chr5.2:78660892-78660911 None:intergenic 25.0%
! AGTTCATCTTAAAAAATGGA+AGG + chr5.2:78663622-78663641 MS.gene73498:CDS 25.0%
! ATAACTATCTTTAAGTCAGA+TGG - chr5.2:78663588-78663607 None:intergenic 25.0%
! CATGAAATCAAAAGGAAAAA+AGG - chr5.2:78662665-78662684 None:intergenic 25.0%
! GGACTAATTGATATATCTTT+CGG + chr5.2:78661976-78661995 MS.gene73498:intron 25.0%
! GTGTGTTGAATAATTTAGTT+GGG + chr5.2:78661450-78661469 MS.gene73498:intron 25.0%
! GTTAGAATTGAAGGTTAATT+AGG + chr5.2:78660159-78660178 MS.gene73498:intron 25.0%
! GTTGAGTTCATCTTAAAAAA+TGG + chr5.2:78663618-78663637 MS.gene73498:CDS 25.0%
! GTTTGTTTAGATAATGATTC+AGG + chr5.2:78662304-78662323 MS.gene73498:intron 25.0%
! TAAATTATTCAACACACACA+GGG - chr5.2:78661447-78661466 None:intergenic 25.0%
! TATCTACATTTAATCCACTA+AGG - chr5.2:78660443-78660462 None:intergenic 25.0%
! TCAAAACATGAAACAAACAT+GGG + chr5.2:78660841-78660860 MS.gene73498:intron 25.0%
! TCAACAAGAAACCTAAAATA+CGG - chr5.2:78663105-78663124 None:intergenic 25.0%
! TGAATTATTCAAGTCTACAA+GGG + chr5.2:78665701-78665720 MS.gene73498:CDS 25.0%
! TGTGTGTTGAATAATTTAGT+TGG + chr5.2:78661449-78661468 MS.gene73498:intron 25.0%
! TTCAAAACATGAAACAAACA+TGG + chr5.2:78660840-78660859 MS.gene73498:intron 25.0%
!! AAAAGTATAAAAATCATGCG+TGG + chr5.2:78660770-78660789 MS.gene73498:intron 25.0%
!! TAAGTATGATATCGATTAGA+AGG - chr5.2:78663708-78663727 None:intergenic 25.0%
!! TGAATAATTTAGTTGGGTTT+TGG + chr5.2:78661456-78661475 MS.gene73498:intron 25.0%
!! TGTTTTCAAAACAAACAAGT+AGG + chr5.2:78661210-78661229 MS.gene73498:intron 25.0%
!! TTACAAATTTTCCATCAACA+TGG - chr5.2:78665787-78665806 None:intergenic 25.0%
!! TTCGATTTTGAATTCTGTTA+TGG + chr5.2:78660057-78660076 MS.gene73498:intron 25.0%
!!! CTTTTTCTTTCAAAGGTATT+TGG - chr5.2:78663404-78663423 None:intergenic 25.0%
!!! GCATAACACTAATTTTAAAG+AGG - chr5.2:78662879-78662898 None:intergenic 25.0%
!!! TCCTTTTGATTTCATGAAAA+GGG + chr5.2:78662669-78662688 MS.gene73498:intron 25.0%
!!! TTCCTTTTGATTTCATGAAA+AGG + chr5.2:78662668-78662687 MS.gene73498:intron 25.0%
!!! TTTTTTTTTTCTTTTCACGG+TGG + chr5.2:78662030-78662049 MS.gene73498:intron 25.0%
AAATCTTGCTGGTAAAGAAA+GGG + chr5.2:78664903-78664922 MS.gene73498:CDS 30.0%
AACCAAACAGAACTGTTATA+AGG - chr5.2:78661367-78661386 None:intergenic 30.0%
AAGAAAATGAAAGTCATTCC+TGG - chr5.2:78660574-78660593 None:intergenic 30.0%
AAGGAGATAATCCAACATTT+GGG + chr5.2:78663052-78663071 MS.gene73498:CDS 30.0%
ACATTAAAATGCAAGCTTCA+GGG + chr5.2:78661418-78661437 MS.gene73498:intron 30.0%
ACCAAACAGAACTGTTATAA+GGG - chr5.2:78661366-78661385 None:intergenic 30.0%
ACCAACATAATAAAAGGGAA+TGG - chr5.2:78663907-78663926 None:intergenic 30.0%
ACCTCAAAATCAGTTTAGTT+TGG + chr5.2:78661815-78661834 MS.gene73498:intron 30.0%
AGAAAGCTTACTTCATAATC+TGG + chr5.2:78662444-78662463 MS.gene73498:CDS 30.0%
AGAAGAATGAATGTATTAGG+AGG - chr5.2:78660004-78660023 None:intergenic 30.0%
AGATGACTATTGGCAATTTA+AGG + chr5.2:78664380-78664399 MS.gene73498:CDS 30.0%
AGATTATGAAGTAAGCTTTC+TGG - chr5.2:78662445-78662464 None:intergenic 30.0%
AGGAAGTTGTAGGAAAATTT+AGG + chr5.2:78660482-78660501 MS.gene73498:intron 30.0%
AGGGTACATATGTTATTCTA+AGG + chr5.2:78662566-78662585 MS.gene73498:intron 30.0%
AGTCTAATTAATAAGGGTAG+AGG + chr5.2:78660462-78660481 MS.gene73498:intron 30.0%
AGTTCAATCTTAGATGTACT+GGG - chr5.2:78663549-78663568 None:intergenic 30.0%
ATAATGAAAGGCGATCAAAA+AGG + chr5.2:78665046-78665065 MS.gene73498:CDS 30.0%
ATGTTCTGTTATTCGATGAA+AGG + chr5.2:78661054-78661073 MS.gene73498:intron 30.0%
ATTAACTGTTTATCCAAACG+AGG - chr5.2:78660185-78660204 None:intergenic 30.0%
ATTATGCGAAGTGAGAAATT+AGG + chr5.2:78663818-78663837 MS.gene73498:intron 30.0%
ATTGTTTAACCAATGTGACT+AGG + chr5.2:78662531-78662550 MS.gene73498:intron 30.0%
CAAAACATGAAACAAACATG+GGG + chr5.2:78660842-78660861 MS.gene73498:intron 30.0%
CAAATAAATATGAGTGGTAG+TGG + chr5.2:78660679-78660698 MS.gene73498:intron 30.0%
CCAACATAATAAAAGGGAAT+GGG - chr5.2:78663906-78663925 None:intergenic 30.0%
CCAATCAGAAATTATTCTGA+GGG + chr5.2:78663023-78663042 MS.gene73498:CDS 30.0%
CCATCAGTATAATGATAAAG+AGG - chr5.2:78661131-78661150 None:intergenic 30.0%
CCTCTTTATCATTATACTGA+TGG + chr5.2:78661128-78661147 MS.gene73498:intron 30.0%
CCTGAAATTGTATATGGAAA+AGG - chr5.2:78661484-78661503 None:intergenic 30.0%
CTAAATTATTCAACACACAC+AGG - chr5.2:78661448-78661467 None:intergenic 30.0%
CTGAATTATTCAAGTCTACA+AGG + chr5.2:78665700-78665719 MS.gene73498:CDS 30.0%
GAGAAATTCAAGATGACTAT+TGG + chr5.2:78664370-78664389 MS.gene73498:CDS 30.0%
GCTGGAAAAGAAAAACAAAA+AGG - chr5.2:78662939-78662958 None:intergenic 30.0%
GCTTTATAAAATGTTCCTTC+TGG + chr5.2:78664116-78664135 MS.gene73498:intron 30.0%
GGAAGTTGTAGGAAAATTTA+GGG + chr5.2:78660483-78660502 MS.gene73498:intron 30.0%
GGAGATAGCTATAACTTATA+TGG - chr5.2:78660297-78660316 None:intergenic 30.0%
TAGTTCAATCTTAGATGTAC+TGG - chr5.2:78663550-78663569 None:intergenic 30.0%
TATAAGTTATAGCTATCTCC+TGG + chr5.2:78660297-78660316 MS.gene73498:intron 30.0%
TATACCTCTTGTGAGAAAAT+GGG + chr5.2:78662732-78662751 MS.gene73498:intron 30.0%
TATCCTACAATTGAAACTCA+GGG - chr5.2:78661580-78661599 None:intergenic 30.0%
TCAGAAACATTAGTTACTTC+AGG - chr5.2:78665741-78665760 None:intergenic 30.0%
TCATCTTGAATTTCTCTTTC+CGG - chr5.2:78664366-78664385 None:intergenic 30.0%
TGTTTACAGTCTAAGTTACA+AGG + chr5.2:78664274-78664293 MS.gene73498:intron 30.0%
TTATCTAAACAAACACGGAA+AGG - chr5.2:78662298-78662317 None:intergenic 30.0%
! ACATTGGTTAAACAATGAGA+GGG - chr5.2:78662527-78662546 None:intergenic 30.0%
! ACTGATGGCTTTTATATGTT+TGG + chr5.2:78661143-78661162 MS.gene73498:intron 30.0%
! AGAAGGTTTTGCTGAAATTT+TGG + chr5.2:78660943-78660962 MS.gene73498:intron 30.0%
! ATCATCTTCATCCGTATTTT+AGG + chr5.2:78663091-78663110 MS.gene73498:CDS 30.0%
! CATGAACATGTCTTTTCAAT+TGG + chr5.2:78661941-78661960 MS.gene73498:intron 30.0%
! CCTTTTCCATATACAATTTC+AGG + chr5.2:78661481-78661500 MS.gene73498:intron 30.0%
! TCATTTAAGAGTACAGATTC+TGG + chr5.2:78661750-78661769 MS.gene73498:intron 30.0%
! TCTGAGTTATCAGTATTGAA+TGG - chr5.2:78664943-78664962 None:intergenic 30.0%
! TTCAATTGGTTCTCATCATT+TGG + chr5.2:78661955-78661974 MS.gene73498:intron 30.0%
! TTTCGTAGAGAGATTTTAGA+AGG + chr5.2:78661683-78661702 MS.gene73498:intron 30.0%
! TTTTTATTCCTACGCTAACA+GGG - chr5.2:78660754-78660773 None:intergenic 30.0%
!! ACAGGAACTTTTTCTTTCAA+AGG - chr5.2:78663411-78663430 None:intergenic 30.0%
!! ATTTTAGAAGGAAGTAAAGC+TGG + chr5.2:78661695-78661714 MS.gene73498:intron 30.0%
!! TATATCTTTCGGTGCAATTT+TGG + chr5.2:78661987-78662006 MS.gene73498:intron 30.0%
!! TGGTTGATTTTCGTGAAATT+AGG + chr5.2:78660077-78660096 MS.gene73498:intron 30.0%
!!! ATGTGATAAGCTGTTTTTGT+AGG + chr5.2:78660358-78660377 MS.gene73498:intron 30.0%
!!! CCTTTTGATTTCATGAAAAG+GGG + chr5.2:78662670-78662689 MS.gene73498:intron 30.0%
!!! GTTTTAAGTTGAGGTTAGAT+AGG + chr5.2:78660107-78660126 MS.gene73498:intron 30.0%
!!! TAGGTTGAGTTTTATTCTCA+TGG + chr5.2:78660712-78660731 MS.gene73498:intron 30.0%
AAAGAAGTTCTTGTGACTCA+AGG + chr5.2:78662623-78662642 MS.gene73498:intron 35.0%
AACTACAGTTAGCATTCATG+CGG + chr5.2:78664444-78664463 MS.gene73498:CDS 35.0%
AAGATCCAGTAAACATGAAG+AGG + chr5.2:78665080-78665099 MS.gene73498:CDS 35.0%
ACAACAATCTCTACATTTGC+AGG + chr5.2:78662111-78662130 MS.gene73498:intron 35.0%
ACACAAACAGATGAATTGCA+AGG - chr5.2:78663791-78663810 None:intergenic 35.0%
ACCCTTATAACAGTTCTGTT+TGG + chr5.2:78661362-78661381 MS.gene73498:intron 35.0%
ACGATGTAGAACATGATTCA+AGG + chr5.2:78663853-78663872 MS.gene73498:intron 35.0%
ACTATCTTTAAGTCAGATGG+AGG - chr5.2:78663585-78663604 None:intergenic 35.0%
AGATAAAAGTCACAAGTCTG+AGG + chr5.2:78664960-78664979 MS.gene73498:CDS 35.0%
AGTCATGACTCAGTGATTTA+AGG + chr5.2:78661655-78661674 MS.gene73498:intron 35.0%
AGTTCATCGAACCTATTCTT+TGG + chr5.2:78661866-78661885 MS.gene73498:intron 35.0%
ATCCTACAATTGAAACTCAG+GGG - chr5.2:78661579-78661598 None:intergenic 35.0%
ATCTGTCTATGGAAATGAAG+AGG + chr5.2:78663230-78663249 MS.gene73498:CDS 35.0%
ATGTATTCATATATACCGCC+TGG + chr5.2:78662847-78662866 MS.gene73498:intron 35.0%
ATGTCTAAGTTTCAGATGCT+TGG + chr5.2:78662595-78662614 MS.gene73498:intron 35.0%
ATTCCTGGAAATAATGTTCC+TGG - chr5.2:78660559-78660578 None:intergenic 35.0%
ATTCTCGGGAATATGAGATA+AGG - chr5.2:78660878-78660897 None:intergenic 35.0%
ATTGGCAATTTAAGGAAGGA+TGG + chr5.2:78664388-78664407 MS.gene73498:CDS 35.0%
CAAAATTAGAGCCATGTTGA+TGG + chr5.2:78665773-78665792 MS.gene73498:CDS 35.0%
CAACGACAAGTATTCTCATA+GGG + chr5.2:78665275-78665294 MS.gene73498:CDS 35.0%
CAAGGAGATAATCCAACATT+TGG + chr5.2:78663051-78663070 MS.gene73498:CDS 35.0%
CAATTATCACCTAGTCACAT+TGG - chr5.2:78662543-78662562 None:intergenic 35.0%
CACAAACAGATGAATTGCAA+GGG - chr5.2:78663790-78663809 None:intergenic 35.0%
CACATTAAAATGCAAGCTTC+AGG + chr5.2:78661417-78661436 MS.gene73498:intron 35.0%
CATGTTTACTGGATCTTGAA+CGG - chr5.2:78665077-78665096 None:intergenic 35.0%
CATTAAAATGCAAGCTTCAG+GGG + chr5.2:78661419-78661438 MS.gene73498:intron 35.0%
CCCTCAGAATAATTTCTGAT+TGG - chr5.2:78663026-78663045 None:intergenic 35.0%
CTATACCTCTTGTGAGAAAA+TGG + chr5.2:78662731-78662750 MS.gene73498:intron 35.0%
CTATCCTACAATTGAAACTC+AGG - chr5.2:78661581-78661600 None:intergenic 35.0%
CTTCTACAAGTGTTTCCTAA+GGG - chr5.2:78660928-78660947 None:intergenic 35.0%
GAAATCTTGCTGGTAAAGAA+AGG + chr5.2:78664902-78664921 MS.gene73498:CDS 35.0%
GACTAGGTGATAATTGTCTA+GGG + chr5.2:78662547-78662566 MS.gene73498:intron 35.0%
GACTATTGGCAATTTAAGGA+AGG + chr5.2:78664384-78664403 MS.gene73498:CDS 35.0%
GATTAGAAGGCAGAAGAAAT+GGG - chr5.2:78663695-78663714 None:intergenic 35.0%
GCCAATCAGAAATTATTCTG+AGG + chr5.2:78663022-78663041 MS.gene73498:CDS 35.0%
GCTTATTTGAACTTATCCAC+TGG - chr5.2:78660406-78660425 None:intergenic 35.0%
GGATGCAATCTAATATGCTA+CGG + chr5.2:78662132-78662151 MS.gene73498:intron 35.0%
GTTCATCGAACCTATTCTTT+GGG + chr5.2:78661867-78661886 MS.gene73498:intron 35.0%
TAGCATTTACCTCGTGAATA+AGG + chr5.2:78660973-78660992 MS.gene73498:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr5.2:78660416-78660435 MS.gene73498:intron 35.0%
TGACTAGGTGATAATTGTCT+AGG + chr5.2:78662546-78662565 MS.gene73498:intron 35.0%
TGTGGTTGTTCTTCATGAAT+CGG - chr5.2:78659972-78659991 None:intergenic 35.0%
TTCAAGTGCAGTTCATAGTT+TGG - chr5.2:78661266-78661285 None:intergenic 35.0%
TTCCTGGAAATAATGTTCCT+GGG - chr5.2:78660558-78660577 None:intergenic 35.0%
TTGCAATTCATCTGTTTGTG+TGG + chr5.2:78663790-78663809 MS.gene73498:intron 35.0%
TTGTATTTGATTCAGCCAGA+AGG - chr5.2:78664134-78664153 None:intergenic 35.0%
TTTAGTCATATGTGCTTCAG+AGG - chr5.2:78664731-78664750 None:intergenic 35.0%
TTTGGACAAGAATAGAAGTC+AGG + chr5.2:78663170-78663189 MS.gene73498:CDS 35.0%
! AGGTCACTAGTATTTTCAGT+TGG - chr5.2:78663267-78663286 None:intergenic 35.0%
! ATTATTCTGAGGGTGAAACA+AGG + chr5.2:78663033-78663052 MS.gene73498:CDS 35.0%
! CAAGTAAGGATGTTTTCAAC+TGG + chr5.2:78662171-78662190 MS.gene73498:intron 35.0%
! CACATTGGTTAAACAATGAG+AGG - chr5.2:78662528-78662547 None:intergenic 35.0%
! CCCATTCCCTTTTATTATGT+TGG + chr5.2:78663903-78663922 MS.gene73498:intron 35.0%
! CCCCTTTTCATGAAATCAAA+AGG - chr5.2:78662673-78662692 None:intergenic 35.0%
! CTGGAGAACTTCTGAAAATA+AGG + chr5.2:78660316-78660335 MS.gene73498:intron 35.0%
! CTTTTTATTCCTACGCTAAC+AGG - chr5.2:78660755-78660774 None:intergenic 35.0%
! GTGAATAAGGCATTAAGGTT+TGG + chr5.2:78660986-78661005 MS.gene73498:intron 35.0%
! TGCTAACTGTAGTTTGAGAT+TGG - chr5.2:78664438-78664457 None:intergenic 35.0%
! TTCTTTTCACGGTGGTTTTT+TGG + chr5.2:78662038-78662057 MS.gene73498:intron 35.0%
! TTTAGGGTGTGTTTGTTTCA+AGG + chr5.2:78660499-78660518 MS.gene73498:intron 35.0%
!! CTTATTTTCAGAAGTTCTCC+AGG - chr5.2:78660318-78660337 None:intergenic 35.0%
!! GCCAAACTAAACTGATTTTG+AGG - chr5.2:78661819-78661838 None:intergenic 35.0%
!!! ATTTTTAGTAAGGCGTCAAG+TGG + chr5.2:78664526-78664545 MS.gene73498:CDS 35.0%
!!! CATCAACATGGCTCTAATTT+TGG - chr5.2:78665775-78665794 None:intergenic 35.0%
!!! CTAAACTGATTTTGAGGTTC+AGG - chr5.2:78661813-78661832 None:intergenic 35.0%
!!! GGTTTCGTTGTTTTAAGTTG+AGG + chr5.2:78660098-78660117 MS.gene73498:intron 35.0%
AAACTAAACACTGTCTTGGG+CGG - chr5.2:78662071-78662090 None:intergenic 40.0%
AAAGATGACAAAACCGATGC+AGG + chr5.2:78663141-78663160 MS.gene73498:CDS 40.0%
AAGGTTAATTAGGCCTCGTT+TGG + chr5.2:78660169-78660188 MS.gene73498:intron 40.0%
ACAGAACTGTTATAAGGGTG+TGG - chr5.2:78661361-78661380 None:intergenic 40.0%
ACAGTCTAAGTTACAAGGCA+AGG + chr5.2:78664279-78664298 MS.gene73498:intron 40.0%
ACATGTTCATGCTCGTTTGT+AGG - chr5.2:78661932-78661951 None:intergenic 40.0%
ACTTCAGCTAGGACAAAAAC+AGG + chr5.2:78663471-78663490 MS.gene73498:CDS 40.0%
AGAAATGCTTCCATCCTTCT+TGG - chr5.2:78663376-78663395 None:intergenic 40.0%
AGTATTCTCATAGGGAGAGT+AGG + chr5.2:78665283-78665302 MS.gene73498:CDS 40.0%
AGTTCTTCAAACTGCTGAAG+AGG + chr5.2:78663737-78663756 MS.gene73498:CDS 40.0%
ATAAGGGTAGAGGAAGTTGT+AGG + chr5.2:78660472-78660491 MS.gene73498:intron 40.0%
ATACAAACTGAACCATGACG+AGG + chr5.2:78661906-78661925 MS.gene73498:intron 40.0%
ATCCAGTAAACATGAAGAGG+AGG + chr5.2:78665083-78665102 MS.gene73498:CDS 40.0%
ATCTGATGTAGCTTCTCGTT+TGG - chr5.2:78662964-78662983 None:intergenic 40.0%
ATGAGAATACTTGTCGTTGG+AGG - chr5.2:78665274-78665293 None:intergenic 40.0%
ATGATCAAGGTCAGCTTCAA+CGG - chr5.2:78659919-78659938 None:intergenic 40.0%
ATGTCTATGCTCATCATCAG+AGG - chr5.2:78665466-78665485 None:intergenic 40.0%
ATTAGGAGGTTACCTTCTTG+TGG - chr5.2:78659990-78660009 None:intergenic 40.0%
CAAACAGAAACTTATGCCAG+TGG + chr5.2:78660387-78660406 MS.gene73498:intron 40.0%
CAAGGCTATTGCAGAAAAAG+TGG + chr5.2:78664678-78664697 MS.gene73498:CDS 40.0%
CAGTCTAAGTTACAAGGCAA+GGG + chr5.2:78664280-78664299 MS.gene73498:intron 40.0%
CATGAAGAACAACCACAAGA+AGG + chr5.2:78659975-78659994 MS.gene73498:CDS 40.0%
CATGCGTGGTTAAAATTCCT+GGG + chr5.2:78660784-78660803 MS.gene73498:intron 40.0%
CATGTGTCAGACTACAAGTA+AGG + chr5.2:78662157-78662176 MS.gene73498:intron 40.0%
CCAAACTGAACCCAAAGAAT+AGG - chr5.2:78661880-78661899 None:intergenic 40.0%
CCAACGACAAGTATTCTCAT+AGG + chr5.2:78665274-78665293 MS.gene73498:CDS 40.0%
CCATGATAAAAAGTGGAGCT+GGG + chr5.2:78664800-78664819 MS.gene73498:CDS 40.0%
CCTATGAGAATACTTGTCGT+TGG - chr5.2:78665277-78665296 None:intergenic 40.0%
CCTTAGGAAACACTTGTAGA+AGG + chr5.2:78660926-78660945 MS.gene73498:intron 40.0%
CCTTCTACAAGTGTTTCCTA+AGG - chr5.2:78660929-78660948 None:intergenic 40.0%
CGATTAGAAGGCAGAAGAAA+TGG - chr5.2:78663696-78663715 None:intergenic 40.0%
CTATGGAAATGAAGAGGATG+AGG + chr5.2:78663236-78663255 MS.gene73498:CDS 40.0%
CTGATGTGTTGAAGATGGTT+TGG + chr5.2:78661332-78661351 MS.gene73498:intron 40.0%
CTTGAAACAAACACACCCTT+AGG + chr5.2:78660910-78660929 MS.gene73498:intron 40.0%
GAAAGACAAAGCATAAGAGC+AGG + chr5.2:78665577-78665596 MS.gene73498:CDS 40.0%
GCAATGTTTGTCAGCAAACA+TGG + chr5.2:78662997-78663016 MS.gene73498:CDS 40.0%
GCTGAGATTAGAAATCTTGC+TGG + chr5.2:78664892-78664911 MS.gene73498:CDS 40.0%
GTGGCACCTGAAATTGTATA+TGG - chr5.2:78661490-78661509 None:intergenic 40.0%
TAATCCACTAAGGTCCTGTT+TGG - chr5.2:78660433-78660452 None:intergenic 40.0%
TACGGATGAAGATGATGATC+AGG - chr5.2:78663087-78663106 None:intergenic 40.0%
TATGCTTTGTCTTTCTGCTC+CGG - chr5.2:78665572-78665591 None:intergenic 40.0%
TATTCTTCAGGCAGCTACTA+GGG + chr5.2:78664480-78664499 MS.gene73498:CDS 40.0%
TCATGAATCGGAGAAGAAGA+AGG - chr5.2:78659960-78659979 None:intergenic 40.0%
TCATGCGTGGTTAAAATTCC+TGG + chr5.2:78660783-78660802 MS.gene73498:intron 40.0%
TCTTGTGAACCATGAACAAC+AGG - chr5.2:78661236-78661255 None:intergenic 40.0%
TCTTTGCTTGGATCTGTCTA+TGG + chr5.2:78663219-78663238 MS.gene73498:CDS 40.0%
TGGAACTGATGTGTTGAAGA+TGG + chr5.2:78661327-78661346 MS.gene73498:intron 40.0%
TTAAGACAGCAACTTCAGCT+AGG + chr5.2:78663460-78663479 MS.gene73498:CDS 40.0%
TTCCCAGGAACATTATTTCC+AGG + chr5.2:78660553-78660572 MS.gene73498:intron 40.0%
TTCCTCCTCTTCATGTTTAC+TGG - chr5.2:78665088-78665107 None:intergenic 40.0%
TTCGCAGCCATGATAAAAAG+TGG + chr5.2:78664793-78664812 MS.gene73498:CDS 40.0%
TTCTGACCTACCAAATGACA+TGG + chr5.2:78664339-78664358 MS.gene73498:CDS 40.0%
! ACCTCGTGAATAAGGCATTA+AGG + chr5.2:78660981-78661000 MS.gene73498:intron 40.0%
! ACCTTAATGCCTTATTCACG+AGG - chr5.2:78660985-78661004 None:intergenic 40.0%
! AGTTTGAGATTGGCTGTCTT+TGG - chr5.2:78664428-78664447 None:intergenic 40.0%
! CATTTTCTTGCTCATGCGTT+TGG + chr5.2:78660585-78660604 MS.gene73498:intron 40.0%
! CCTATTCTTTGGGTTCAGTT+TGG + chr5.2:78661877-78661896 MS.gene73498:intron 40.0%
! CTAAGGGTGTGTTTGTTTCA+AGG - chr5.2:78660912-78660931 None:intergenic 40.0%
! CTTTCTGGTACTGGAAAGTT+GGG - chr5.2:78662430-78662449 None:intergenic 40.0%
! GACTGATTCCGCTTTATAAC+AGG - chr5.2:78663429-78663448 None:intergenic 40.0%
! GTTAGTGCTACTACTGTTGT+AGG + chr5.2:78662221-78662240 MS.gene73498:intron 40.0%
! GTTTGAGATTGGCTGTCTTT+GGG - chr5.2:78664427-78664446 None:intergenic 40.0%
! TCATCCCATTTTCTCACAAG+AGG - chr5.2:78662739-78662758 None:intergenic 40.0%
! TGAAGTAAGCTTTCTGGTAC+TGG - chr5.2:78662439-78662458 None:intergenic 40.0%
!! ATTTTAAAGAGGGTCTTGCC+AGG - chr5.2:78662868-78662887 None:intergenic 40.0%
!! CAGCTACTAGGGGTATTAAA+AGG + chr5.2:78664491-78664510 MS.gene73498:CDS 40.0%
!! CGAGATAACGTTGATGATCA+AGG - chr5.2:78659932-78659951 None:intergenic 40.0%
!! CTTGGCAGTTCGCTTTTAAA+TGG - chr5.2:78664826-78664845 None:intergenic 40.0%
!! TGGTAGTGGGATCTTATAGT+AGG + chr5.2:78660693-78660712 MS.gene73498:intron 40.0%
!!! ACGTGATCGATGCTTTTTTC+TGG - chr5.2:78665175-78665194 None:intergenic 40.0%
!!! CACTTTTTCTGCAATAGCCT+TGG - chr5.2:78664680-78664699 None:intergenic 40.0%
AAGTCACAAGTAAGCGAGGT+TGG + chr5.2:78665654-78665673 MS.gene73498:CDS 45.0%
AATTCCCACCATCACTTCCA+AGG - chr5.2:78664564-78664583 None:intergenic 45.0%
ACAAGTAGGCCTGTTGTTCA+TGG + chr5.2:78661224-78661243 MS.gene73498:intron 45.0%
ACATCGCAATCTGAATGCAG+AGG + chr5.2:78664633-78664652 MS.gene73498:CDS 45.0%
ACATGAAGAGGAGGAAGAAG+AGG + chr5.2:78665092-78665111 MS.gene73498:CDS 45.0%
ACCATTAGACCCTGAATCTG+GGG - chr5.2:78663502-78663521 None:intergenic 45.0%
ACCTACCAAATGACATGGAC+CGG + chr5.2:78664344-78664363 MS.gene73498:CDS 45.0%
AGAATACTTGTCGTTGGAGG+AGG - chr5.2:78665271-78665290 None:intergenic 45.0%
AGACAAGTCACAAGTAAGCG+AGG + chr5.2:78665650-78665669 MS.gene73498:CDS 45.0%
AGTCACAAGTAAGCGAGGTT+GGG + chr5.2:78665655-78665674 MS.gene73498:CDS 45.0%
AGTTACTTCAGGTGACTGAG+AGG - chr5.2:78665730-78665749 None:intergenic 45.0%
ATCACTGTCCTTTGTCTCAG+TGG - chr5.2:78662389-78662408 None:intergenic 45.0%
ATCTTCAGATGCAGCCAAGA+AGG + chr5.2:78663359-78663378 MS.gene73498:CDS 45.0%
ATTCTTCAGGCAGCTACTAG+GGG + chr5.2:78664481-78664500 MS.gene73498:CDS 45.0%
ATTTGAACCGCAACTTCGCA+AGG - chr5.2:78661538-78661557 None:intergenic 45.0%
CAAGAATAGAAGTCAGGAGC+TGG + chr5.2:78663176-78663195 MS.gene73498:CDS 45.0%
CAATCCAAACAGGACCTTAG+TGG + chr5.2:78660426-78660445 MS.gene73498:intron 45.0%
CACCATTAGACCCTGAATCT+GGG - chr5.2:78663503-78663522 None:intergenic 45.0%
CACTAAGGTCCTGTTTGGAT+TGG - chr5.2:78660428-78660447 None:intergenic 45.0%
CACTGAGTCATGACTCGTTA+GGG - chr5.2:78661650-78661669 None:intergenic 45.0%
CCAACTAAAGCACATAACGC+AGG - chr5.2:78661025-78661044 None:intergenic 45.0%
CCTGCGTTATGTGCTTTAGT+TGG + chr5.2:78661022-78661041 MS.gene73498:intron 45.0%
CTATTCTTCAGGCAGCTACT+AGG + chr5.2:78664479-78664498 MS.gene73498:CDS 45.0%
CTTGAGAGAAACGCACATGT+GGG + chr5.2:78663285-78663304 MS.gene73498:CDS 45.0%
CTTGCTGGTAAAGAAAGGGA+AGG + chr5.2:78664907-78664926 MS.gene73498:CDS 45.0%
GAAGATGATGATCAGGCATC+AGG - chr5.2:78663080-78663099 None:intergenic 45.0%
GACCCCTGAGTTTCAATTGT+AGG + chr5.2:78661574-78661593 MS.gene73498:intron 45.0%
GACTCGTTAGGGATCTGAAT+CGG - chr5.2:78661639-78661658 None:intergenic 45.0%
GATGTTCGTCATCTTCTCTC+CGG + chr5.2:78659843-78659862 MS.gene73498:CDS 45.0%
GCCATGATAAAAAGTGGAGC+TGG + chr5.2:78664799-78664818 MS.gene73498:CDS 45.0%
GGAAATGAAGAGGATGAGGA+TGG + chr5.2:78663240-78663259 MS.gene73498:CDS 45.0%
GGCTCAACAGATAAAGCTCT+TGG - chr5.2:78664844-78664863 None:intergenic 45.0%
GGTAGGTCAGAACTCATAGA+CGG - chr5.2:78664331-78664350 None:intergenic 45.0%
GTCGATCTTCACACAGAAGT+CGG + chr5.2:78665193-78665212 MS.gene73498:CDS 45.0%
GTTACTTCAGGTGACTGAGA+GGG - chr5.2:78665729-78665748 None:intergenic 45.0%
TACGCGAATGTCTATGCTCA+TGG - chr5.2:78665431-78665450 None:intergenic 45.0%
TATTCCTACGCTAACAGGGT+GGG - chr5.2:78660750-78660769 None:intergenic 45.0%
TCACTGAGTCATGACTCGTT+AGG - chr5.2:78661651-78661670 None:intergenic 45.0%
TCAGATGGAGGTTCAACAAC+AGG - chr5.2:78663573-78663592 None:intergenic 45.0%
TCAGGTGCAGTGAATTCATC+AGG + chr5.2:78662322-78662341 MS.gene73498:CDS 45.0%
TCGATCTTCACACAGAAGTC+GGG + chr5.2:78665194-78665213 MS.gene73498:CDS 45.0%
TCTTTCCGGTCCATGTCATT+TGG - chr5.2:78664352-78664371 None:intergenic 45.0%
TGAGTCTGTTCTTGCTGAAC+AGG + chr5.2:78663650-78663669 MS.gene73498:CDS 45.0%
TGATGTAGCTTCTCGTTTGG+AGG - chr5.2:78662961-78662980 None:intergenic 45.0%
TTATTCCTACGCTAACAGGG+TGG - chr5.2:78660751-78660770 None:intergenic 45.0%
TTCCAATCAACGAGAGCTTC+CGG - chr5.2:78659801-78659820 None:intergenic 45.0%
TTCCTGGGAACAGCATTACA+AGG - chr5.2:78660543-78660562 None:intergenic 45.0%
TTCCTTGTAATGCTGTTCCC+AGG + chr5.2:78660538-78660557 MS.gene73498:intron 45.0%
! AGAGCGGTGTTTTTCATCAG+AGG - chr5.2:78665373-78665392 None:intergenic 45.0%
! AGTAAGGCGTCAAGTGGTAA+TGG + chr5.2:78664532-78664551 MS.gene73498:CDS 45.0%
! CGGTTAAACAGAAGAGTGTG+TGG - chr5.2:78661509-78661528 None:intergenic 45.0%
! CTGATGATGAGCATAGTCAC+CGG + chr5.2:78665550-78665569 MS.gene73498:CDS 45.0%
! CTGCTACTTCTGCATCATCA+GGG + chr5.2:78663319-78663338 MS.gene73498:CDS 45.0%
! GCTTTCTGGTACTGGAAAGT+TGG - chr5.2:78662431-78662450 None:intergenic 45.0%
! TGCTACTTCTGCATCATCAG+GGG + chr5.2:78663320-78663339 MS.gene73498:CDS 45.0%
! TTGGCTGCTGGCTATTAAGT+TGG + chr5.2:78662006-78662025 MS.gene73498:intron 45.0%
!! AAGGACAGTGATACTGACTC+TGG + chr5.2:78662397-78662416 MS.gene73498:CDS 45.0%
!! GGAAAAAAGGTGCCTGTGAA+TGG - chr5.2:78662652-78662671 None:intergenic 45.0%
!!! CCCAGCTCCACTTTTTATCA+TGG - chr5.2:78664803-78664822 None:intergenic 45.0%
!!! AATACAATAATTATTTTATT+TGG + chr5.2:78664147-78664166 MS.gene73498:intron 5.0%
!!! ATACAATAATTATTTTATTT+GGG + chr5.2:78664148-78664167 MS.gene73498:intron 5.0%
AAAGTGGCTATTGCAGCAGC+AGG + chr5.2:78664694-78664713 MS.gene73498:CDS 50.0%
AACAGGATCGTGCTCATGGA+AGG + chr5.2:78663667-78663686 MS.gene73498:CDS 50.0%
AACCGATGCAGGCTCAACTT+TGG + chr5.2:78663152-78663171 MS.gene73498:CDS 50.0%
AGACCCTGCAGTTGAGATGA+CGG - chr5.2:78664607-78664626 None:intergenic 50.0%
AGCTGCCTGAAGAATAGCTG+CGG - chr5.2:78664476-78664495 None:intergenic 50.0%
AGTCAGGAGCTGGATCAAAC+AGG + chr5.2:78663186-78663205 MS.gene73498:CDS 50.0%
ATGCAGACAGGGACAGAAAC+AGG + chr5.2:78665223-78665242 MS.gene73498:CDS 50.0%
ATTGCAGCGGATGATGAGTG+CGG - chr5.2:78659893-78659912 None:intergenic 50.0%
CAGGTCTCATGCTGAAAGAG+AGG + chr5.2:78665596-78665615 MS.gene73498:CDS 50.0%
CCACATGTGCGTTTCTCTCA+AGG - chr5.2:78663287-78663306 None:intergenic 50.0%
CCTTGAGAGAAACGCACATG+TGG + chr5.2:78663284-78663303 MS.gene73498:CDS 50.0%
GAACCTGAAAGTCCAGAGCT+CGG - chr5.2:78664868-78664887 None:intergenic 50.0%
GACTCAAGGTAGCCATTCAC+AGG + chr5.2:78662637-78662656 MS.gene73498:intron 50.0%
GATTCCACCTTGCGAAGTTG+CGG + chr5.2:78661528-78661547 MS.gene73498:intron 50.0%
GCAACTTCGCAAGGTGGAAT+CGG - chr5.2:78661529-78661548 None:intergenic 50.0%
GCACCATTAGACCCTGAATC+TGG - chr5.2:78663504-78663523 None:intergenic 50.0%
GCTTCAACGGTAGATTGCAG+CGG - chr5.2:78659906-78659925 None:intergenic 50.0%
GGCATCAGGAACCCAAATGT+TGG - chr5.2:78663066-78663085 None:intergenic 50.0%
GTCCAAAGTTGAGCCTGCAT+CGG - chr5.2:78663157-78663176 None:intergenic 50.0%
GTGGGAATTTGTCCAGCTCT+CGG + chr5.2:78664575-78664594 MS.gene73498:CDS 50.0%
TAGCGTGTCCACTGAGACAA+AGG + chr5.2:78662378-78662397 MS.gene73498:CDS 50.0%
TCAGATGCAGCCAAGAAGGA+TGG + chr5.2:78663363-78663382 MS.gene73498:CDS 50.0%
TGAAAGAGAGGCAGAGTTGG+AGG + chr5.2:78665608-78665627 MS.gene73498:CDS 50.0%
TGCTGAAAGAGAGGCAGAGT+TGG + chr5.2:78665605-78665624 MS.gene73498:CDS 50.0%
TGCTTCTGTTCCAGTTGCCA+AGG + chr5.2:78664660-78664679 MS.gene73498:CDS 50.0%
TTAAAGAGGGTCTTGCCAGG+CGG - chr5.2:78662865-78662884 None:intergenic 50.0%
TTAGGGATCTGAATCGGCGA+TGG - chr5.2:78661633-78661652 None:intergenic 50.0%
TTCACACAGAAGTCGGGACA+GGG + chr5.2:78665200-78665219 MS.gene73498:CDS 50.0%
TTGCCGTCATCTCAACTGCA+GGG + chr5.2:78664601-78664620 MS.gene73498:CDS 50.0%
TTTGCCGTCATCTCAACTGC+AGG + chr5.2:78664600-78664619 MS.gene73498:CDS 50.0%
! GATTGGCTGTCTTTGGGAGT+TGG - chr5.2:78664421-78664440 None:intergenic 50.0%
! GCTGCTACTTCTGCATCATC+AGG + chr5.2:78663318-78663337 MS.gene73498:CDS 50.0%
! GGAGGTGCATTGTCTTTGCT+TGG + chr5.2:78663207-78663226 MS.gene73498:CDS 50.0%
! TCCGGTCCATGTCATTTGGT+AGG - chr5.2:78664348-78664367 None:intergenic 50.0%
! TCTGCAATAGCCTTGGCAAC+TGG - chr5.2:78664673-78664692 None:intergenic 50.0%
!!! TTCGGTGCAATTTTGGCTGC+TGG + chr5.2:78661994-78662013 MS.gene73498:intron 50.0%
AAGAGAGGCAGAGTTGGAGG+AGG + chr5.2:78665611-78665630 MS.gene73498:CDS 55.0%
ACAAGTAAGCGAGGTTGGGC+GGG + chr5.2:78665659-78665678 MS.gene73498:CDS 55.0%
ACAGGAGTTGCCCCAGATTC+AGG + chr5.2:78663489-78663508 MS.gene73498:CDS 55.0%
AGAGAGGCAGAGTTGGAGGA+GGG + chr5.2:78665612-78665631 MS.gene73498:CDS 55.0%
AGAGGAGGAAGAAGAGGACG+AGG + chr5.2:78665098-78665117 MS.gene73498:CDS 55.0%
AGCAGCCGCAGCTATTCTTC+AGG + chr5.2:78664468-78664487 MS.gene73498:CDS 55.0%
CACAAGTAAGCGAGGTTGGG+CGG + chr5.2:78665658-78665677 MS.gene73498:CDS 55.0%
CACCGGAAGCTCTCGTTGAT+TGG + chr5.2:78659796-78659815 MS.gene73498:CDS 55.0%
CACGATGACGTCGAGAAGAG+CGG - chr5.2:78665389-78665408 None:intergenic 55.0%
CAGACAGGGACAGAAACAGG+CGG + chr5.2:78665226-78665245 MS.gene73498:CDS 55.0%
CAGGAGCTGGATCAAACAGG+AGG + chr5.2:78663189-78663208 MS.gene73498:CDS 55.0%
CAGGAGTTGCCCCAGATTCA+GGG + chr5.2:78663490-78663509 MS.gene73498:CDS 55.0%
CAGGCCTTGGAAGTGATGGT+GGG + chr5.2:78664557-78664576 MS.gene73498:CDS 55.0%
CCATCCTAATCCCACCTGCA+CGG - chr5.2:78662696-78662715 None:intergenic 55.0%
CTCGTTTGTAGGCCTCGTCA+TGG - chr5.2:78661921-78661940 None:intergenic 55.0%
CTTCACACAGAAGTCGGGAC+AGG + chr5.2:78665199-78665218 MS.gene73498:CDS 55.0%
CTTCTCGACGTCATCGTGGA+GGG + chr5.2:78665391-78665410 MS.gene73498:CDS 55.0%
GAACTCATAGACGGATCCGC+TGG - chr5.2:78664322-78664341 None:intergenic 55.0%
GATGATGAGTGCGGCGTTTG+AGG - chr5.2:78659884-78659903 None:intergenic 55.0%
GATTCCCACCCTGTTAGCGT+AGG + chr5.2:78660743-78660762 MS.gene73498:intron 55.0%
GCCCCAGATTCAGGGTCTAA+TGG + chr5.2:78663498-78663517 MS.gene73498:CDS 55.0%
GCTGAACAGGATCGTGCTCA+TGG + chr5.2:78663663-78663682 MS.gene73498:CDS 55.0%
GTAGCTTCTCGTTTGGAGGC+TGG - chr5.2:78662957-78662976 None:intergenic 55.0%
TAGGCATGACAGCTCCTCTG+AGG + chr5.2:78665302-78665321 MS.gene73498:CDS 55.0%
TATTGCAGCAGCAGGTGAGG+CGG + chr5.2:78664702-78664721 MS.gene73498:CDS 55.0%
TCTTCTCGACGTCATCGTGG+AGG + chr5.2:78665390-78665409 MS.gene73498:CDS 55.0%
TGAACCGCAACTTCGCAAGG+TGG - chr5.2:78661535-78661554 None:intergenic 55.0%
TTCATGAAAAGGGGCCGTGC+AGG + chr5.2:78662679-78662698 MS.gene73498:intron 55.0%
! CATGACAGCTCCTCTGAGGA+GGG + chr5.2:78665306-78665325 MS.gene73498:CDS 55.0%
! CGTTTGAGGCGAGGAGGAAT+TGG - chr5.2:78659870-78659889 None:intergenic 55.0%
!! AGGGTGAGCATCGACACTTG+AGG + chr5.2:78665325-78665344 MS.gene73498:CDS 55.0%
!! AGTGGTAATGGTCCAGGCCT+TGG + chr5.2:78664544-78664563 MS.gene73498:CDS 55.0%
!! GCGTCAAGTGGTAATGGTCC+AGG + chr5.2:78664538-78664557 MS.gene73498:CDS 55.0%
AGAGGCAGAGTTGGAGGAGG+GGG + chr5.2:78665614-78665633 MS.gene73498:CDS 60.0%
AGGGGTCTCGCTGTACGACT+CGG - chr5.2:78661561-78661580 None:intergenic 60.0%
ATGAAAAGGGGCCGTGCAGG+TGG + chr5.2:78662682-78662701 MS.gene73498:intron 60.0%
CCACCATCACTTCCAAGGCC+TGG - chr5.2:78664559-78664578 None:intergenic 60.0%
CCAGGCCTTGGAAGTGATGG+TGG + chr5.2:78664556-78664575 MS.gene73498:CDS 60.0%
CCGTGCAGGTGGGATTAGGA+TGG + chr5.2:78662693-78662712 MS.gene73498:intron 60.0%
CCTGAAAGTCCAGAGCTCGG+TGG - chr5.2:78664865-78664884 None:intergenic 60.0%
CGCTCTTCTCGACGTCATCG+TGG + chr5.2:78665387-78665406 MS.gene73498:CDS 60.0%
CGTCGAACAGCATCGCGTGA+CGG - chr5.2:78659749-78659768 None:intergenic 60.0%
GAGAGGCAGAGTTGGAGGAG+GGG + chr5.2:78665613-78665632 MS.gene73498:CDS 60.0%
GAGGCGAGGAGGAATTGGAC+CGG - chr5.2:78659865-78659884 None:intergenic 60.0%
GATCCGCTGGAGTGTGCTTC+TGG - chr5.2:78664309-78664328 None:intergenic 60.0%
GCGATGCTGTTCGACGACGA+CGG + chr5.2:78659753-78659772 MS.gene73498:CDS 60.0%
GGCTATTGCAGCAGCAGGTG+AGG + chr5.2:78664699-78664718 MS.gene73498:CDS 60.0%
GGTCCAGGCCTTGGAAGTGA+TGG + chr5.2:78664553-78664572 MS.gene73498:CDS 60.0%
TCGATGCTCACCCTCCTCAG+AGG - chr5.2:78665319-78665338 None:intergenic 60.0%
TCGGGACAGGGATGCAGACA+GGG + chr5.2:78665212-78665231 MS.gene73498:CDS 60.0%
TCTGTTGAGCCACCGAGCTC+TGG + chr5.2:78664853-78664872 MS.gene73498:CDS 60.0%
TGAAAAGGGGCCGTGCAGGT+GGG + chr5.2:78662683-78662702 MS.gene73498:intron 60.0%
TGACGGCAAACTCCGAGAGC+TGG - chr5.2:78664590-78664609 None:intergenic 60.0%
! CTGCCAGAAGCACACTCCAG+CGG + chr5.2:78664303-78664322 MS.gene73498:CDS 60.0%
! GCATGACAGCTCCTCTGAGG+AGG + chr5.2:78665305-78665324 MS.gene73498:CDS 60.0%
!! CCACCGAGCTCTGGACTTTC+AGG + chr5.2:78664862-78664881 MS.gene73498:CDS 60.0%
GCTGTTCGACGACGACGGCA+TGG + chr5.2:78659758-78659777 MS.gene73498:CDS 65.0%
GGCGGCGTTCGTGAACTCAC+CGG + chr5.2:78659779-78659798 MS.gene73498:CDS 65.0%
GTCGGGACAGGGATGCAGAC+AGG + chr5.2:78665211-78665230 MS.gene73498:CDS 65.0%
GTTCGACGACGACGGCATGG+CGG + chr5.2:78659761-78659780 MS.gene73498:CDS 65.0%
! TGAGTGCGGCGTTTGAGGCG+AGG - chr5.2:78659879-78659898 None:intergenic 65.0%
GGGGCCGTGCAGGTGGGATT+AGG + chr5.2:78662689-78662708 MS.gene73498:intron 70.0%
! GTGCGGCGTTTGAGGCGAGG+AGG - chr5.2:78659876-78659895 None:intergenic 70.0%
!! CGAGGTTGGGCGGGCTAGCA+GGG + chr5.2:78665668-78665687 MS.gene73498:CDS 70.0%
!! GCGAGGTTGGGCGGGCTAGC+AGG + chr5.2:78665667-78665686 MS.gene73498:CDS 75.0%
!! GGTTGGGCGGGCTAGCAGGG+AGG + chr5.2:78665671-78665690 MS.gene73498:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 78659726 78665806 78659726 ID=MS.gene73498
chr5.2 mRNA 78659726 78665806 78659726 ID=MS.gene73498.t1;Parent=MS.gene73498
chr5.2 exon 78659726 78659996 78659726 ID=MS.gene73498.t1.exon1;Parent=MS.gene73498.t1
chr5.2 CDS 78659726 78659996 78659726 ID=cds.MS.gene73498.t1;Parent=MS.gene73498.t1
chr5.2 exon 78662314 78662465 78662314 ID=MS.gene73498.t1.exon2;Parent=MS.gene73498.t1
chr5.2 CDS 78662314 78662465 78662314 ID=cds.MS.gene73498.t1;Parent=MS.gene73498.t1
chr5.2 exon 78662958 78663758 78662958 ID=MS.gene73498.t1.exon3;Parent=MS.gene73498.t1
chr5.2 CDS 78662958 78663758 78662958 ID=cds.MS.gene73498.t1;Parent=MS.gene73498.t1
chr5.2 exon 78664283 78665806 78664283 ID=MS.gene73498.t1.exon4;Parent=MS.gene73498.t1
chr5.2 CDS 78664283 78665806 78664283 ID=cds.MS.gene73498.t1;Parent=MS.gene73498.t1
Gene Sequence

>MS.gene73498

ATGGATCTCGAAGTCGTTGGCCGTCACGCGATGCTGTTCGACGACGACGGCATGGCGGCGTTCGTGAACTCACCGGAAGCTCTCGTTGATTGGAATTCTCTCTCAATCGATCGTTACGATGTTCGTCATCTTCTCTCCGGTCCAATTCCTCCTCGCCTCAAACGCCGCACTCATCATCCGCTGCAATCTACCGTTGAAGCTGACCTTGATCATCAACGTTATCTCGATCTTCCTTCTTCTTCTCCGATTCATGAAGAACAACCACAAGAAGGTAACCTCCTAATACATTCATTCTTCTAGTATTTTTATTCGTTATTTTCTGTATCGTTTATTCGATTTTGAATTCTGTTATGGTTGATTTTCGTGAAATTAGGTTTCGTTGTTTTAAGTTGAGGTTAGATAGGAAGCTTCATATATGAAACCGTAAAATTTTGTTAGAATTGAAGGTTAATTAGGCCTCGTTTGGATAAACAGTTAATTTGCAGCTTATAGTACAAGTGCTTTTAATGATAAGCGCTTATTTATAAACTATTTATAGAGCAAAAGATGAAATGAAGATAGTTTGTTTCCATATAAGTTATAGCTATCTCCTGGAGAACTTCTGAAAATAAGGCGAAAACAACTTATGAACAATGTGATAAGCTGTTTTTGTAGGTTCTCGCAAACAGAAACTTATGCCAGTGGATAAGTTCAAATAAGCCAATCCAAACAGGACCTTAGTGGATTAAATGTAGATAGTCTAATTAATAAGGGTAGAGGAAGTTGTAGGAAAATTTAGGGTGTGTTTGTTTCAAGGTATAAAAATTACTACATTCCTTGTAATGCTGTTCCCAGGAACATTATTTCCAGGAATGACTTTCATTTTCTTGCTCATGCGTTTGGTTAAATTTTAGATTTCATTGGAATATTTTTAAAATTTATTTAAAGTAAAACAAATTTTAAAAATAAAAATGCAAATAAATATGAGTGGTAGTGGGATCTTATAGTAGGTTGAGTTTTATTCTCATGGAAATGTTCGATTCCCACCCTGTTAGCGTAGGAATAAAAAGTATAAAAATCATGCGTGGTTAAAATTCCTGGGAACAAAAAAATTAAAAATTTCTGGAAACAAATTTTCAAAACATGAAACAAACATGGGGATGTTACATTCCTTATCTCATATTCCCGAGAATAACATTATAAACCTTGAAACAAACACACCCTTAGGAAACACTTGTAGAAGGTTTTGCTGAAATTTTGGTTTTTGATAGCATTTACCTCGTGAATAAGGCATTAAGGTTTGGTTGTTATTGTCGTCCTGCGTTATGTGCTTTAGTTGGAATAGATAAATGTTCTGTTATTCGATGAAAGGAAGCATGCCCATATATGTCAATTAAATTTAGATTTTGGATTTGAGATTTATCCTCTTTATCATTATACTGATGGCTTTTATATGTTTGGAACATATTGTTTTAATGAATCATCATGAGTGATTCTCTAATACTTGTTTTCAAAACAAACAAGTAGGCCTGTTGTTCATGGTTCACAAGAAACTGAGCCAAACTATGAACTGCACTTGAACCAAACTCAAAATAACCAAAATTTTGATAAAGTTTATTGAATGGAACTGATGTGTTGAAGATGGTTTGGTAACCACACCCTTATAACAGTTCTGTTTGGTTACTGAATCGCTGCTGTATAACATGTTGCAACACATTAAAATGCAAGCTTCAGGGGTTCCCTGTGTGTGTTGAATAATTTAGTTGGGTTTTGGTACCTTTTCCATATACAATTTCAGGTGCCACACACTCTTCTGTTTAACCGATTCCACCTTGCGAAGTTGCGGTTCAAATCCGAGTCGTACAGCGAGACCCCTGAGTTTCAATTGTAGGATAGAGAGAGCAATCACTTTCTCGCGTATTTCTCCATCGCCGATTCAGATCCCTAACGAGTCATGACTCAGTGATTTAAGGTTCAGTTTCGTAGAGAGATTTTAGAAGGAAGTAAAGCTGGAAAAAATAAAGAAGCATCTTGCATTTGCAATTTCATTTAAGAGTACAGATTCTGGAAAAAAAATCAGTGCTTAAATTAAAGTTCAGCAGAGTCCTGAACCTCAAAATCAGTTTAGTTTGGCTCTAGTAAATTTAAAATATTTCAGTTCAGTTCATCGAACCTATTCTTTGGGTTCAGTTTGGTTTTTCATACAAACTGAACCATGACGAGGCCTACAAACGAGCATGAACATGTCTTTTCAATTGGTTCTCATCATTTGGACTAATTGATATATCTTTCGGTGCAATTTTGGCTGCTGGCTATTAAGTTGGATTTTTTTTTTCTTTTCACGGTGGTTTTTTGGACAACTTCCGCCCAAGACAGTGTTTAGTTTTTTTTTTTTTTTTTTGTACAACAACAATCTCTACATTTGCAGGATGCAATCTAATATGCTACGGTTCATGTGTCAGACTACAAGTAAGGATGTTTTCAACTGGCTTCCATTTTGTTTTAGTTTATTTGGTGTTAGTGCTACTACTGTTGTAGGTGTATGTTATTGTTGCTGTTAAGAATTATATGTGATTCTGATGAAATGTCACCTTTCCGTGTTTGTTTAGATAATGATTCAGGTGCAGTGAATTCATCAGGCTATCGTGCTGTTGCATTTTCATATGAAAATTCTAGCGTGTCCACTGAGACAAAGGACAGTGATACTGACTCTGGTTTTCGTCCCAACTTTCCAGTACCAGAAAGCTTACTTCATAATCTGGTGAGTAACATCTTTCTTAAAATATAATCCGATCATGTGATTTTCATGTTTTAATTGACCCTCTCATTGTTTAACCAATGTGACTAGGTGATAATTGTCTAGGGTACATATGTTATTCTAAGGCTTATGATGTCTAAGTTTCAGATGCTTGGAGCTTAAAGAAGTTCTTGTGACTCAAGGTAGCCATTCACAGGCACCTTTTTTCCTTTTGATTTCATGAAAAGGGGCCGTGCAGGTGGGATTAGGATGGTAGAAATTGTTGATTCTATACCTCTTGTGAGAAAATGGGATGAAACATTTCTACATAAAGCTCTAGTTCTTGATCTTTATGATTATTCAAGTATATATGAGGTTGTCTTGTGTTTGTTTAATAAGATCTTCATGTATTCATATATACCGCCTGGCAAGACCCTCTTTAAAATTAGTGTTATGCTAATTTGAATTAAAATTCACATTTATTGACAAAAAAACCTTTTTGTTTTTCTTTTCCAGCCTCCAAACGAGAAGCTACATCAGATTATTTCAAAGACTGCAATGTTTGTCAGCAAACATGGAAGCCAATCAGAAATTATTCTGAGGGTGAAACAAGGAGATAATCCAACATTTGGGTTCCTGATGCCTGATCATCATCTTCATCCGTATTTTAGGTTTCTTGTTGATCATCAAGAACTTCTGAAAGATGACAAAACCGATGCAGGCTCAACTTTGGACAAGAATAGAAGTCAGGAGCTGGATCAAACAGGAGGTGCATTGTCTTTGCTTGGATCTGTCTATGGAAATGAAGAGGATGAGGATGGTCCAACTGAAAATACTAGTGACCTTGAGAGAAACGCACATGTGGGAGCTGTTGATGCTGCTACTTCTGCATCATCAGGGGTAGAGCAAGCACAATCATCTTCAGATGCAGCCAAGAAGGATGGAAGCATTTCTAAAAACCAAATACCTTTGAAAGAAAAAGTTCCTGTTATAAAGCGGAATCAGTCTATCAGTATTGTTAAGACAGCAACTTCAGCTAGGACAAAAACAGGAGTTGCCCCAGATTCAGGGTCTAATGGTGCAAATAAATCACAGACTTCTGTGCCCAGTACATCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTAAAGATAGTTATTGATAAAATAGTTGAGTTCATCTTAAAAAATGGAAGGCAATTTGAGTCTGTTCTTGCTGAACAGGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCTTCTAATCGATATCATACTTACTATCTGAAAGTTCTTCAAACTGCTGAAGAGGTGTGTTTCTCATAATCATTAAATTTTACCCTTGCAATTCATCTGTTTGTGTGGTTCAAATTATGCGAAGTGAGAAATTAGGTGCATTTTTACTACGATGTAGAACATGATTCAAGGTCACTATGATTGATGCTTCGCACGCTACCCATTCCCTTTTATTATGTTGGTTATTCTCATATGTCATTATTTCATATTATGTGTTAATTAATCTGTGGATGAAATGCATGCTTCTATATAATTCATTCAATACTTCACAAATCACAGTAAATAAAATATTGTCTGGATACGTAGTACATAGTTTTCACAAATTATGAATATGAATATTCAAAGCAATATTGGTTATTTTTATTCATCTTTGCTTTATAAAATGTTCCTTCTGGCTGAATCAAATACAATAATTATTTTATTTGGGTTCAAGATGCTTTTTGTGCAATTAGTGCATCTTAAGAATTTCGTGTAATTTGATTAATTTCAAGGTTTGTTAAATTTGATTTTGATTTAATGATATTTTCAATTGTTTACAGTCTAAGTTACAAGGCAAGGGCTGCCAGAAGCACACTCCAGCGGATCCGTCTATGAGTTCTGACCTACCAAATGACATGGACCGGAAAGAGAAATTCAAGATGACTATTGGCAATTTAAGGAAGGATGGTCAAGATCCAACTCCCAAAGACAGCCAATCTCAAACTACAGTTAGCATTCATGCGGCAGCAGCCGCAGCTATTCTTCAGGCAGCTACTAGGGGTATTAAAAGGCCTAATTTAGAAATTTTTAGTAAGGCGTCAAGTGGTAATGGTCCAGGCCTTGGAAGTGATGGTGGGAATTTGTCCAGCTCTCGGAGTTTGCCGTCATCTCAACTGCAGGGTCTTGTTCTACATCGCAATCTGAATGCAGAGGCTCATGCTTCTGTTCCAGTTGCCAAGGCTATTGCAGAAAAAGTGGCTATTGCAGCAGCAGGTGAGGCGGACTCCTCTGAAGCACATATGACTAAAGAGCAAAAGCTTAAAGCAGAGAGATTGAAACGAGCAAAGATGTTCGCAGCCATGATAAAAAGTGGAGCTGGGCCATTTAAAAGCGAACTGCCAAGAGCTTTATCTGTTGAGCCACCGAGCTCTGGACTTTCAGGTTCAGATGCTGAGATTAGAAATCTTGCTGGTAAAGAAAGGGAAGGAAGTTCTGTTCCATTCAATACTGATAACTCAGATAAAAGTCACAAGTCTGAGGAAAAGCTTTCTGATGATAATTCAGATAAAAGTCACAAGTCTGAAGAAAAACTTACTGTTGATAATAATGAAAGGCGATCAAAAAGGAAGTACCGTTCAAGATCCAGTAAACATGAAGAGGAGGAAGAAGAGGACGAGGATGATGAAGAAGAAGAAGAAAATAAAGAAGATACAAGGGATCACAAAAGATCCAGAAAAAAGCATCGATCACGTCGATCTTCACACAGAAGTCGGGACAGGGATGCAGACAGGGACAGAAACAGGCGGAAGCACAAGAGAAGAGATTCCTCCTCCAACGACAAGTATTCTCATAGGGAGAGTAGGCATGACAGCTCCTCTGAGGAGGGTGAGCATCGACACTTGAGGCATCAATGTAAATATGAAAGCTCCTCTGATGAAAAACACCGCTCTTCTCGACGTCATCGTGGAGGGAGCAAGTTGTCAGACCATGAGCATAGACATTCGCGTAAACATTATAGTTCCTCTGATGATGAGCATAGACATTCGCGTAAACGTTATAGTTCATCTGATGATGAGCATAGACATTCGCGTAAACATTATAGTTCATCTGATGATGAGCATAGTCACCGGAGCAGAAAGACAAAGCATAAGAGCAGGTCTCATGCTGAAAGAGAGGCAGAGTTGGAGGAGGGGGAAATAGTGAAATCAGACAAGTCACAAGTAAGCGAGGTTGGGCGGGCTAGCAGGGAGGCTTCTGCTGAATTATTCAAGTCTACAAGGGCACCCTCTCAGTCACCTGAAGTAACTAATGTTTCTGATGAGCTTAGAGCCAAAATTAGAGCCATGTTGATGGAAAATTTGTAA
Protein sequence

>MS.gene73498.t1

MDLEVVGRHAMLFDDDGMAAFVNSPEALVDWNSLSIDRYDVRHLLSGPIPPRLKRRTHHPLQSTVEADLDHQRYLDLPSSSPIHEEQPQEDNDSGAVNSSGYRAVAFSYENSSVSTETKDSDTDSGFRPNFPVPESLLHNLPPNEKLHQIISKTAMFVSKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQELLKDDKTDAGSTLDKNRSQELDQTGGALSLLGSVYGNEEDEDGPTENTSDLERNAHVGAVDAATSASSGVEQAQSSSDAAKKDGSISKNQIPLKEKVPVIKRNQSISIVKTATSARTKTGVAPDSGSNGANKSQTSVPSTSKIELPVVEPPSDLKIVIDKIVEFILKNGRQFESVLAEQDRAHGRFPFLLPSNRYHTYYLKVLQTAEESKLQGKGCQKHTPADPSMSSDLPNDMDRKEKFKMTIGNLRKDGQDPTPKDSQSQTTVSIHAAAAAAILQAATRGIKRPNLEIFSKASSGNGPGLGSDGGNLSSSRSLPSSQLQGLVLHRNLNAEAHASVPVAKAIAEKVAIAAAGEADSSEAHMTKEQKLKAERLKRAKMFAAMIKSGAGPFKSELPRALSVEPPSSGLSGSDAEIRNLAGKEREGSSVPFNTDNSDKSHKSEEKLSDDNSDKSHKSEEKLTVDNNERRSKRKYRSRSSKHEEEEEEDEDDEEEEENKEDTRDHKRSRKKHRSRRSSHRSRDRDADRDRNRRKHKRRDSSSNDKYSHRESRHDSSSEEGEHRHLRHQCKYESSSDEKHRSSRRHRGGSKLSDHEHRHSRKHYSSSDDEHRHSRKRYSSSDDEHRHSRKHYSSSDDEHSHRSRKTKHKSRSHAEREAELEEGEIVKSDKSQVSEVGRASREASAELFKSTRAPSQSPEVTNVSDELRAKIRAMLMENL