Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44179.t1 | XP_003591208.2 | 98.7 | 681 | 8 | 1 | 43 | 723 | 198 | 877 | 0.00E+00 | 1262.7 |
| MS.gene44179.t1 | XP_003591208.2 | 96.2 | 26 | 1 | 0 | 1 | 26 | 1 | 26 | 9.40E-04 | 55.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44179.t1 | Q9LFE0 | 64.2 | 657 | 207 | 9 | 83 | 722 | 174 | 819 | 2.4e-213 | 743.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44179.t1 | G7I9G8 | 98.7 | 681 | 8 | 1 | 43 | 723 | 198 | 877 | 0.0e+00 | 1262.7 |
| MS.gene44179.t1 | G7I9G8 | 96.2 | 26 | 1 | 0 | 1 | 26 | 1 | 26 | 6.8e-04 | 55.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene44179 | 0.866446 | 2.83E-65 | -1.69E-46 |
| MS.gene04918 | MS.gene44179 | 0.853842 | 1.83E-61 | -1.69E-46 |
| MS.gene04919 | MS.gene44179 | 0.826095 | 3.27E-54 | -1.69E-46 |
| MS.gene04920 | MS.gene44179 | 0.850726 | 1.41E-60 | -1.69E-46 |
| MS.gene049254 | MS.gene44179 | 0.854476 | 1.20E-61 | -1.69E-46 |
| MS.gene049283 | MS.gene44179 | 0.824784 | 6.69E-54 | -1.69E-46 |
| MS.gene049343 | MS.gene44179 | 0.831802 | 1.36E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene44179 | 0.808179 | 3.52E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene44179 | 0.841493 | 4.60E-58 | -1.69E-46 |
| MS.gene049419 | MS.gene44179 | -0.834715 | 2.55E-56 | -1.69E-46 |
| MS.gene049452 | MS.gene44179 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene44179 | 0.879788 | 9.36E-70 | -1.69E-46 |
| MS.gene049652 | MS.gene44179 | 0.816509 | 5.33E-52 | -1.69E-46 |
| MS.gene049680 | MS.gene44179 | 0.822946 | 1.80E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene44179 | 0.807887 | 4.06E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene44179 | 0.812972 | 3.24E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene44179 | 0.876676 | 1.16E-68 | -1.69E-46 |
| MS.gene050081 | MS.gene44179 | 0.822583 | 2.19E-53 | -1.69E-46 |
| MS.gene050312 | MS.gene44179 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene44179 | 0.834162 | 3.51E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene44179 | 0.83804 | 3.64E-57 | -1.69E-46 |
| MS.gene050689 | MS.gene44179 | 0.801502 | 8.74E-49 | -1.69E-46 |
| MS.gene050737 | MS.gene44179 | 0.860897 | 1.50E-63 | -1.69E-46 |
| MS.gene050941 | MS.gene44179 | 0.869945 | 2.12E-66 | -1.69E-46 |
| MS.gene051003 | MS.gene44179 | 0.832499 | 9.13E-56 | -1.69E-46 |
| MS.gene051019 | MS.gene44179 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene44179 | 0.806564 | 7.74E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene44179 | 0.811926 | 5.48E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene44179 | 0.810025 | 1.42E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene44179 | 0.819514 | 1.12E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene44179 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene44179 | 0.817821 | 2.70E-52 | -1.69E-46 |
| MS.gene052118 | MS.gene44179 | 0.818667 | 1.74E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene44179 | 0.846039 | 2.79E-59 | -1.69E-46 |
| MS.gene052342 | MS.gene44179 | 0.808013 | 3.82E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene44179 | 0.857876 | 1.21E-62 | -1.69E-46 |
| MS.gene052516 | MS.gene44179 | 0.825921 | 3.60E-54 | -1.69E-46 |
| MS.gene052518 | MS.gene44179 | 0.894796 | 1.76E-75 | -1.69E-46 |
| MS.gene052519 | MS.gene44179 | 0.847817 | 9.10E-60 | -1.69E-46 |
| MS.gene052533 | MS.gene44179 | 0.826739 | 2.30E-54 | -1.69E-46 |
| MS.gene052534 | MS.gene44179 | 0.829691 | 4.47E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene44179 | 0.804889 | 1.74E-49 | -1.69E-46 |
| MS.gene052685 | MS.gene44179 | 0.802124 | 6.51E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene44179 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene44179 | 0.805104 | 1.57E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene44179 | 0.805236 | 1.47E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene44179 | 0.80819 | 3.50E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene44179 | 0.811576 | 6.53E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene44179 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene053146 | MS.gene44179 | 0.809285 | 2.04E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene44179 | 0.815852 | 7.47E-52 | -1.69E-46 |
| MS.gene053228 | MS.gene44179 | 0.830758 | 2.45E-55 | -1.69E-46 |
| MS.gene053272 | MS.gene44179 | -0.866739 | 2.29E-65 | -1.69E-46 |
| MS.gene053427 | MS.gene44179 | 0.830462 | 2.90E-55 | -1.69E-46 |
| MS.gene05350 | MS.gene44179 | 0.819323 | 1.23E-52 | -1.69E-46 |
| MS.gene054004 | MS.gene44179 | 0.845758 | 3.33E-59 | -1.69E-46 |
| MS.gene054142 | MS.gene44179 | 0.823084 | 1.68E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene44179 | 0.809199 | 2.13E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene44179 | 0.841782 | 3.86E-58 | -1.69E-46 |
| MS.gene054582 | MS.gene44179 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene44179 | 0.848751 | 5.02E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene44179 | 0.849398 | 3.32E-60 | -1.69E-46 |
| MS.gene054709 | MS.gene44179 | 0.828543 | 8.48E-55 | -1.69E-46 |
| MS.gene054939 | MS.gene44179 | 0.806408 | 8.35E-50 | -1.69E-46 |
| MS.gene054940 | MS.gene44179 | 0.803911 | 2.78E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene44179 | 0.868563 | 5.95E-66 | -1.69E-46 |
| MS.gene055724 | MS.gene44179 | 0.825336 | 4.96E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene44179 | 0.834286 | 3.27E-56 | -1.69E-46 |
| MS.gene055841 | MS.gene44179 | 0.818617 | 1.79E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene44179 | 0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene056010 | MS.gene44179 | 0.822465 | 2.34E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene44179 | 0.811967 | 5.37E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene44179 | 0.82338 | 1.43E-53 | -1.69E-46 |
| MS.gene056595 | MS.gene44179 | 0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene44179 | 0.88779 | 1.05E-72 | -1.69E-46 |
| MS.gene056776 | MS.gene44179 | 0.842823 | 2.04E-58 | -1.69E-46 |
| MS.gene056786 | MS.gene44179 | 0.805919 | 1.06E-49 | -1.69E-46 |
| MS.gene056825 | MS.gene44179 | 0.8232 | 1.57E-53 | -1.69E-46 |
| MS.gene056831 | MS.gene44179 | 0.806075 | 9.81E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene44179 | 0.843835 | 1.10E-58 | -1.69E-46 |
| MS.gene05690 | MS.gene44179 | 0.844201 | 8.75E-59 | -1.69E-46 |
| MS.gene056986 | MS.gene44179 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene44179 | 0.835551 | 1.57E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene44179 | 0.88936 | 2.60E-73 | -1.69E-46 |
| MS.gene057132 | MS.gene44179 | 0.815806 | 7.66E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene44179 | 0.817641 | 2.97E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene44179 | 0.869234 | 3.61E-66 | -1.69E-46 |
| MS.gene057371 | MS.gene44179 | 0.809184 | 2.14E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene44179 | 0.809574 | 1.77E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene44179 | 0.823976 | 1.04E-53 | -1.69E-46 |
| MS.gene057893 | MS.gene44179 | -0.807438 | 5.05E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene44179 | 0.835954 | 1.24E-56 | -1.69E-46 |
| MS.gene058009 | MS.gene44179 | 0.836475 | 9.16E-57 | -1.69E-46 |
| MS.gene058010 | MS.gene44179 | 0.811722 | 6.07E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene44179 | 0.820184 | 7.85E-53 | -1.69E-46 |
| MS.gene058159 | MS.gene44179 | 0.818388 | 2.01E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene44179 | 0.810088 | 1.37E-50 | -1.69E-46 |
| MS.gene058355 | MS.gene44179 | 0.817112 | 3.90E-52 | -1.69E-46 |
| MS.gene058427 | MS.gene44179 | 0.822871 | 1.88E-53 | -1.69E-46 |
| MS.gene058592 | MS.gene44179 | 0.806335 | 8.65E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene44179 | 0.818475 | 1.92E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene44179 | 0.870053 | 1.95E-66 | -1.69E-46 |
| MS.gene058783 | MS.gene44179 | 0.8741 | 8.79E-68 | -1.69E-46 |
| MS.gene058979 | MS.gene44179 | 0.815312 | 9.86E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene44179 | 0.81004 | 1.40E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene44179 | 0.825299 | 5.06E-54 | -1.69E-46 |
| MS.gene059170 | MS.gene44179 | 0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene44179 | 0.833257 | 5.92E-56 | -1.69E-46 |
| MS.gene05952 | MS.gene44179 | 0.844765 | 6.17E-59 | -1.69E-46 |
| MS.gene059570 | MS.gene44179 | 0.801005 | 1.10E-48 | -1.69E-46 |
| MS.gene059778 | MS.gene44179 | 0.800221 | 1.60E-48 | -1.69E-46 |
| MS.gene059842 | MS.gene44179 | 0.817198 | 3.73E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene44179 | -0.866464 | 2.80E-65 | -1.69E-46 |
| MS.gene059901 | MS.gene44179 | -0.821369 | 4.19E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene44179 | 0.809724 | 1.64E-50 | -1.69E-46 |
| MS.gene060085 | MS.gene44179 | 0.812479 | 4.15E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene44179 | 0.808506 | 2.99E-50 | -1.69E-46 |
| MS.gene060338 | MS.gene44179 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene44179 | 0.807913 | 4.01E-50 | -1.69E-46 |
| MS.gene060435 | MS.gene44179 | 0.827293 | 1.69E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene44179 | 0.819325 | 1.23E-52 | -1.69E-46 |
| MS.gene060527 | MS.gene44179 | 0.828437 | 9.00E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene44179 | 0.800232 | 1.59E-48 | -1.69E-46 |
| MS.gene060777 | MS.gene44179 | 0.830055 | 3.64E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene44179 | 0.868718 | 5.30E-66 | -1.69E-46 |
| MS.gene060933 | MS.gene44179 | 0.851625 | 7.86E-61 | -1.69E-46 |
| MS.gene060935 | MS.gene44179 | 0.909 | 9.23E-82 | -1.69E-46 |
| MS.gene060937 | MS.gene44179 | 0.909982 | 3.12E-82 | -1.69E-46 |
| MS.gene061100 | MS.gene44179 | 0.864926 | 8.56E-65 | -1.69E-46 |
| MS.gene061160 | MS.gene44179 | 0.828454 | 8.91E-55 | -1.69E-46 |
| MS.gene061188 | MS.gene44179 | 0.85392 | 1.74E-61 | -1.69E-46 |
| MS.gene061243 | MS.gene44179 | 0.815297 | 9.94E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44179.t1 | MTR_1g083910 | 98.705 | 695 | 8 | 1 | 29 | 723 | 184 | 877 | 0.0 | 1382 |
| MS.gene44179.t1 | MTR_1g083910 | 96.552 | 29 | 1 | 0 | 1 | 29 | 1 | 29 | 9.51e-11 | 65.9 |
| MS.gene44179.t1 | MTR_1g083910 | 98.129 | 695 | 8 | 2 | 29 | 723 | 184 | 873 | 0.0 | 1369 |
| MS.gene44179.t1 | MTR_1g083910 | 96.552 | 29 | 1 | 0 | 1 | 29 | 1 | 29 | 9.41e-11 | 65.9 |
| MS.gene44179.t1 | MTR_1g083910 | 97.788 | 633 | 9 | 2 | 91 | 723 | 24 | 651 | 0.0 | 1245 |
| MS.gene44179.t1 | MTR_1g032020 | 76.786 | 672 | 134 | 8 | 30 | 689 | 137 | 798 | 0.0 | 934 |
| MS.gene44179.t1 | MTR_1g032350 | 76.786 | 672 | 134 | 8 | 30 | 689 | 137 | 798 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44179.t1 | AT5G16780 | 63.225 | 707 | 229 | 10 | 29 | 718 | 128 | 820 | 0.0 | 798 |
| MS.gene44179.t1 | AT5G16780 | 63.225 | 707 | 229 | 10 | 29 | 718 | 128 | 820 | 0.0 | 798 |
| MS.gene44179.t1 | AT5G16780 | 63.225 | 707 | 229 | 10 | 29 | 718 | 128 | 820 | 0.0 | 798 |
| MS.gene44179.t1 | AT3G14700 | 45.775 | 142 | 57 | 4 | 520 | 658 | 80 | 204 | 4.07e-21 | 92.4 |
| MS.gene44179.t1 | AT3G14700 | 45.775 | 142 | 57 | 4 | 520 | 658 | 80 | 204 | 4.07e-21 | 92.4 |
Find 163 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCAGGTTGAGCACTTTC+TGG | 0.176468 | 1.3:-59546506 | MS.gene44179:intron |
| TCTTTCTTGCTCATCTTTGA+TGG | 0.249425 | 1.3:+59550574 | None:intergenic |
| AATATCACCATCAGCAAGTA+TGG | 0.257075 | 1.3:+59551766 | None:intergenic |
| GCAGCCGGATCATCATATTT+TGG | 0.261898 | 1.3:+59551425 | None:intergenic |
| TTGTTCTGGACGAAGTAATT+TGG | 0.267374 | 1.3:+59550490 | None:intergenic |
| GAAGCTGAAGCTGTCTCTTC+AGG | 0.292774 | 1.3:-59550644 | MS.gene44179:CDS |
| TTTGGGGTGCCCGAGTTTGA+TGG | 0.321687 | 1.3:+59546445 | None:intergenic |
| AAAGGAAGCACCAAATAAAA+AGG | 0.322540 | 1.3:-59549479 | MS.gene44179:CDS |
| TTTGAAGACCTTACTTCATC+TGG | 0.332576 | 1.3:-59550773 | MS.gene44179:CDS |
| TCCTCCTTGTCCTCTGAGTT+GGG | 0.349750 | 1.3:+59549667 | None:intergenic |
| TTAACATACGGAGATTGTTC+TGG | 0.351909 | 1.3:+59550476 | None:intergenic |
| ATTGAGAGGACAGATGAGTT+TGG | 0.364228 | 1.3:-59549448 | MS.gene44179:CDS |
| CTCCTCCTTGTCCTCTGAGT+TGG | 0.371973 | 1.3:+59549666 | None:intergenic |
| ATGACCACTAAGAACAAGAT+AGG | 0.372572 | 1.3:+59548224 | None:intergenic |
| TAGCCGTCTAGCTTTCTCTA+AGG | 0.384919 | 1.3:+59550397 | None:intergenic |
| ACACCCTATCTTGTTCTTAG+TGG | 0.391158 | 1.3:-59548228 | MS.gene44179:CDS |
| CAGAGATGGAAGAATTTGTC+TGG | 0.392803 | 1.3:-59550235 | MS.gene44179:CDS |
| GTCTCTTCAGGATTGGGTAT+TGG | 0.393267 | 1.3:-59550632 | MS.gene44179:CDS |
| TTGAGAGGACAGATGAGTTT+GGG | 0.399880 | 1.3:-59549447 | MS.gene44179:CDS |
| AAGGTCTTCAAAGTTATTAG+TGG | 0.406255 | 1.3:+59550784 | None:intergenic |
| ATTCTCTCCACAGACATTGA+TGG | 0.408602 | 1.3:+59548276 | None:intergenic |
| ACCTGTTCCCGTTGAGGAAA+AGG | 0.408985 | 1.3:-59549743 | MS.gene44179:CDS |
| TTTCAGGTTGAGCACTTTCT+GGG | 0.410725 | 1.3:-59546505 | MS.gene44179:intron |
| TTGGGGTGCCCGAGTTTGAT+GGG | 0.412564 | 1.3:+59546446 | None:intergenic |
| TCATCAACATTCTCATTACT+AGG | 0.420075 | 1.3:+59550305 | None:intergenic |
| ACTTAAAGAAAGTGTTGAAT+GGG | 0.421632 | 1.3:-59549560 | MS.gene44179:CDS |
| ACGGCTAGCTCTTAAGAAAC+AGG | 0.428175 | 1.3:-59550381 | MS.gene44179:CDS |
| AAAGATAGGTCAAGGGATAG+AGG | 0.428588 | 1.3:-59560215 | MS.gene44179:intron |
| CAGGAAGAGAAAGGAGCATC+TGG | 0.430055 | 1.3:-59550362 | MS.gene44179:CDS |
| AAGAGACAGCTTCAGCTTCA+AGG | 0.432503 | 1.3:+59550648 | None:intergenic |
| CAGCTCCGGAGAAGGTTAAC+TGG | 0.435037 | 1.3:-59550812 | MS.gene44179:CDS |
| CTCATTACTAGGATTTAAGC+TGG | 0.437116 | 1.3:+59550316 | None:intergenic |
| GATGAAAGAGGAAGATTCTC+AGG | 0.440994 | 1.3:-59551286 | MS.gene44179:CDS |
| CAAAGATGAGCAAGAAAGAT+TGG | 0.443784 | 1.3:-59550570 | MS.gene44179:CDS |
| GTATTGGTGACCTTGGTTCT+CGG | 0.444155 | 1.3:-59550616 | MS.gene44179:CDS |
| ATTATCCGAAAGGCTTCCTT+AGG | 0.449178 | 1.3:+59548405 | None:intergenic |
| CTTAGTGGTCATGTTAAAGC+AGG | 0.455633 | 1.3:-59548213 | MS.gene44179:CDS |
| GAAGCTGTCTCTTCAGGATT+GGG | 0.462236 | 1.3:-59550638 | MS.gene44179:CDS |
| TCTCATAAGTTCCATGGTAA+AGG | 0.463591 | 1.3:-59548381 | MS.gene44179:CDS |
| CTCGGATACCCCATCAAACT+CGG | 0.463730 | 1.3:-59546455 | MS.gene44179:CDS |
| CTGCTTTAGCATAAGCAGTC+TGG | 0.464188 | 1.3:+59550522 | None:intergenic |
| ACAGTTGAGAAAGATCTTCC+TGG | 0.470057 | 1.3:-59547212 | MS.gene44179:CDS |
| ACTTCATGTATAGTTTCATC+AGG | 0.474899 | 1.3:+59549637 | None:intergenic |
| CAGCTTATCTTTCTTCCGTA+AGG | 0.475516 | 1.3:+59550682 | None:intergenic |
| TGAAGCTGTCTCTTCAGGAT+TGG | 0.476525 | 1.3:-59550639 | MS.gene44179:CDS |
| TCTTCCTCTGCTTTAACATA+CGG | 0.477570 | 1.3:+59550464 | None:intergenic |
| GCTGTAGGGAAAGGACTGTC+TGG | 0.478978 | 1.3:-59549613 | MS.gene44179:CDS |
| AACCACCAGTTAACCTTCTC+CGG | 0.481606 | 1.3:+59550807 | None:intergenic |
| CATGAGGAAGATTATGAATC+GGG | 0.482629 | 1.3:-59560179 | MS.gene44179:CDS |
| ACTTCCAAAATATGATGATC+CGG | 0.482727 | 1.3:-59551429 | MS.gene44179:CDS |
| ATGAAAACATCTTCACCATC+TGG | 0.487004 | 1.3:+59549784 | None:intergenic |
| ATGCTTGAAAATGTGGAAAT+CGG | 0.489731 | 1.3:-59551646 | MS.gene44179:CDS |
| CAAATTCTTCCATCTCTGTA+AGG | 0.491825 | 1.3:+59550240 | None:intergenic |
| CACTTAAAGAAAGTGTTGAA+TGG | 0.492309 | 1.3:-59549561 | MS.gene44179:CDS |
| CAATGTCTGTGGAGAGAATG+AGG | 0.496086 | 1.3:-59548272 | MS.gene44179:CDS |
| TCATGAGGAAGATTATGAAT+CGG | 0.496836 | 1.3:-59560180 | MS.gene44179:CDS |
| GGATTGGGTATTGGTGACCT+TGG | 0.498503 | 1.3:-59550623 | MS.gene44179:CDS |
| CATTGATATGCTTGAAAATG+TGG | 0.500350 | 1.3:-59551653 | MS.gene44179:CDS |
| TTGCTTCCAGTTGACTCCTA+AGG | 0.501772 | 1.3:-59548421 | MS.gene44179:intron |
| GGATGTTGGTAAACATGAAA+AGG | 0.502978 | 1.3:-59560114 | MS.gene44179:CDS |
| TAAAAGCCGTAAGCTTGAAA+AGG | 0.508214 | 1.3:-59552833 | MS.gene44179:CDS |
| TTCTGGACGAAGTAATTTGG+AGG | 0.508522 | 1.3:+59550493 | None:intergenic |
| CAAGTAAAGCAATTGCTTGA+GGG | 0.509285 | 1.3:+59550339 | None:intergenic |
| ATGATGATGATGGGGTAGAT+AGG | 0.509998 | 1.3:-59560688 | MS.gene44179:intron |
| AGCATAGGTGTCAAGCCTCC+AGG | 0.512212 | 1.3:+59547194 | None:intergenic |
| TGACTCCTAAGGAAGCCTTT+CGG | 0.513771 | 1.3:-59548410 | MS.gene44179:CDS |
| AATCAATCAAGATGATAAAG+AGG | 0.517912 | 1.3:-59560084 | MS.gene44179:CDS |
| ATACCTTTCCAGATGAAGTA+AGG | 0.520565 | 1.3:+59550765 | None:intergenic |
| CTTAAGAAACAGGAAGAGAA+AGG | 0.520659 | 1.3:-59550371 | MS.gene44179:CDS |
| CAGCAAACCTCTTCAGCAGC+CGG | 0.520854 | 1.3:+59551410 | None:intergenic |
| GAGGAAAAGGACGACGAGGC+TGG | 0.523483 | 1.3:-59549730 | MS.gene44179:CDS |
| GTTGGGATTGTAGAGGATGA+CGG | 0.524942 | 1.3:-59549502 | MS.gene44179:CDS |
| CAAACTAGTGACCCGAAAAG+TGG | 0.527957 | 1.3:-59547242 | MS.gene44179:CDS |
| AGAGACAGCTTCAGCTTCAA+GGG | 0.531012 | 1.3:+59550649 | None:intergenic |
| GGTTTAACTTTGGATGAAAG+AGG | 0.531100 | 1.3:-59551298 | MS.gene44179:CDS |
| CCTATTAACAGCTCCGGAGA+AGG | 0.531576 | 1.3:-59550820 | MS.gene44179:intron |
| CATGAAGTTGCTGTAGGGAA+AGG | 0.534222 | 1.3:-59549622 | MS.gene44179:CDS |
| ACTATACATGAAGTTGCTGT+AGG | 0.537252 | 1.3:-59549628 | MS.gene44179:CDS |
| GCAAGTAAAGCAATTGCTTG+AGG | 0.537473 | 1.3:+59550338 | None:intergenic |
| ATAATTTCTCATAAGTTCCA+TGG | 0.540301 | 1.3:-59548387 | MS.gene44179:CDS |
| ATCAATCAAGATGATAAAGA+GGG | 0.543685 | 1.3:-59560083 | MS.gene44179:CDS |
| GGAGGCTTGACACCTATGCT+TGG | 0.551518 | 1.3:-59547191 | MS.gene44179:CDS |
| AGAGATGGAAGAATTTGTCT+GGG | 0.551797 | 1.3:-59550234 | MS.gene44179:CDS |
| CTATACATGAAGTTGCTGTA+GGG | 0.553754 | 1.3:-59549627 | MS.gene44179:CDS |
| TCATCATAATGCTCCCTCAC+AGG | 0.554296 | 1.3:+59560704 | None:intergenic |
| AGGGAGCATTATGATGATGA+TGG | 0.554806 | 1.3:-59560698 | MS.gene44179:CDS |
| CAAGGTGGTCCTTACAGAGA+TGG | 0.558634 | 1.3:-59550249 | MS.gene44179:CDS |
| AAAAGGACGACGAGGCTGGT+GGG | 0.560079 | 1.3:-59549726 | MS.gene44179:CDS |
| AGGACCTGGCAAAATGAAGC+AGG | 0.561387 | 1.3:-59548361 | MS.gene44179:CDS |
| GATGATCAAAATGCTGCAGC+TGG | 0.562657 | 1.3:-59550287 | MS.gene44179:CDS |
| TATCATACAGATCACCTGGC+GGG | 0.562738 | 1.3:-59551860 | MS.gene44179:intron |
| AGGAAGTAGAAAGGCTCATG+AGG | 0.563110 | 1.3:-59560195 | MS.gene44179:CDS |
| CTTACGGAAGAAAGATAAGC+TGG | 0.563251 | 1.3:-59550681 | MS.gene44179:CDS |
| AGACCTTACTTCATCTGGAA+AGG | 0.564865 | 1.3:-59550768 | MS.gene44179:CDS |
| TGATGATCCGGCTGCTGAAG+AGG | 0.565468 | 1.3:-59551417 | MS.gene44179:intron |
| ACCTATGCTTGGTGATCGGA+AGG | 0.565500 | 1.3:-59547180 | MS.gene44179:intron |
| AAAAGGAGATTCACATTGAG+AGG | 0.568087 | 1.3:-59549462 | MS.gene44179:CDS |
| AACAATCTGAGATTTCATCA+TGG | 0.568465 | 1.3:-59552861 | MS.gene44179:CDS |
| TGGGGTCTTCACATTGATGA+AGG | 0.572199 | 1.3:-59550215 | MS.gene44179:intron |
| CTTATGAGAAATTATCCGAA+AGG | 0.572925 | 1.3:+59548395 | None:intergenic |
| TAGGACAACATCGCAGTAGA+GGG | 0.574935 | 1.3:-59552672 | MS.gene44179:CDS |
| TCAGAAGCACGTAGGCCAGA+TGG | 0.575661 | 1.3:-59549799 | MS.gene44179:intron |
| GAAAAGAGAGACGAGGATGT+TGG | 0.576723 | 1.3:-59560128 | MS.gene44179:CDS |
| AAAAGCTGAACAATCAAGCT+CGG | 0.579635 | 1.3:-59546473 | MS.gene44179:CDS |
| ATCATACAGATCACCTGGCG+GGG | 0.582643 | 1.3:-59551859 | MS.gene44179:intron |
| CAAATTGGTTGGGATTGTAG+AGG | 0.583891 | 1.3:-59549509 | MS.gene44179:CDS |
| AAGGGATAGAGGAAGTAGAA+AGG | 0.586590 | 1.3:-59560204 | MS.gene44179:CDS |
| GGGAGCATTATGATGATGAT+GGG | 0.586853 | 1.3:-59560697 | MS.gene44179:CDS |
| AAGTTCCATGGTAAAGGACC+TGG | 0.587246 | 1.3:-59548375 | MS.gene44179:CDS |
| CTTGACAAAGTTGCGGAAGG+TGG | 0.587424 | 1.3:-59551818 | MS.gene44179:CDS |
| CACCTTCCGCAACTTTGTCA+AGG | 0.591120 | 1.3:+59551819 | None:intergenic |
| TGACACCTATGCTTGGTGAT+CGG | 0.591348 | 1.3:-59547184 | MS.gene44179:CDS |
| ATAGGACAACATCGCAGTAG+AGG | 0.598772 | 1.3:-59552673 | MS.gene44179:intron |
| TGAATGGGGTGGCAGAAACA+TGG | 0.599175 | 1.3:-59549545 | MS.gene44179:CDS |
| TGACCACTAAGAACAAGATA+GGG | 0.600379 | 1.3:+59548225 | None:intergenic |
| GCAGCCCAACTCAGAGGACA+AGG | 0.600396 | 1.3:-59549671 | MS.gene44179:CDS |
| TCATGGCCTTGACAAAGTTG+CGG | 0.601477 | 1.3:-59551825 | MS.gene44179:CDS |
| AGCTGAAAAGAGACTTGAAG+AGG | 0.601720 | 1.3:-59551260 | MS.gene44179:intron |
| TGGGGTGCCCGAGTTTGATG+GGG | 0.601959 | 1.3:+59546447 | None:intergenic |
| AGAGGCACCTGTTCCCGTTG+AGG | 0.602387 | 1.3:-59549749 | MS.gene44179:CDS |
| GAAAAGGACGACGAGGCTGG+TGG | 0.603961 | 1.3:-59549727 | MS.gene44179:CDS |
| ATATCACCATCAGCAAGTAT+GGG | 0.605185 | 1.3:+59551767 | None:intergenic |
| TGAATATCATACAGATCACC+TGG | 0.606237 | 1.3:-59551864 | MS.gene44179:intron |
| GTTCAATGATGACCCCTCCT+CGG | 0.607020 | 1.3:-59551462 | MS.gene44179:CDS |
| GAGAGAGGATTCTCCTGTGA+GGG | 0.607534 | 1.3:-59560717 | MS.gene44179:CDS |
| GCTGATGGTGATATTAATGA+AGG | 0.610021 | 1.3:-59551758 | MS.gene44179:intron |
| CTGACAGGATGAAAGAAACA+AGG | 0.610836 | 1.3:-59552891 | MS.gene44179:intron |
| GGCCTTGACAAAGTTGCGGA+AGG | 0.611991 | 1.3:-59551821 | MS.gene44179:CDS |
| GATTGTAGAGGATGACGGAA+AGG | 0.619258 | 1.3:-59549497 | MS.gene44179:CDS |
| TGGAGAGTCAAAAGAAAACA+AGG | 0.619539 | 1.3:-59550267 | MS.gene44179:CDS |
| TCGCATCTTTCCGAGAACCA+AGG | 0.619952 | 1.3:+59550606 | None:intergenic |
| AGGACGACGAGGCTGGTGGG+TGG | 0.621400 | 1.3:-59549723 | MS.gene44179:CDS |
| AGATACACCATCAATGTCTG+TGG | 0.623227 | 1.3:-59548283 | MS.gene44179:CDS |
| TCGGATACCCCATCAAACTC+GGG | 0.624838 | 1.3:-59546454 | MS.gene44179:CDS |
| GATCAGCCCATACTTGCTGA+TGG | 0.625072 | 1.3:-59551773 | MS.gene44179:CDS |
| TTCGTGAGAATAGTAATCTG+AGG | 0.627105 | 1.3:+59550742 | None:intergenic |
| TCATACAGATCACCTGGCGG+GGG | 0.629933 | 1.3:-59551858 | MS.gene44179:intron |
| ATCTCCGTATGTTAAAGCAG+AGG | 0.631715 | 1.3:-59550468 | MS.gene44179:CDS |
| TTGAAACTGCTTAAAGATCG+AGG | 0.640832 | 1.3:-59549586 | MS.gene44179:CDS |
| TTAGTGGTCATGTTAAAGCA+GGG | 0.644194 | 1.3:-59548212 | MS.gene44179:intron |
| ATCACGTTACGATGAGAGAG+AGG | 0.645344 | 1.3:-59560732 | MS.gene44179:CDS |
| AATCCTTAGAGAAAGCTAGA+CGG | 0.655105 | 1.3:-59550400 | MS.gene44179:CDS |
| CAATCAAGATGATAAAGAGG+GGG | 0.657564 | 1.3:-59560081 | MS.gene44179:CDS |
| TTTCATGCAAGATGACGAAG+AGG | 0.660186 | 1.3:-59549767 | MS.gene44179:CDS |
| AAAGAAAGTGTTGAATGGGG+TGG | 0.660707 | 1.3:-59549556 | MS.gene44179:CDS |
| AATGTCTGTGGAGAGAATGA+GGG | 0.660859 | 1.3:-59548271 | MS.gene44179:CDS |
| ACCTTCCGATCACCAAGCAT+AGG | 0.661707 | 1.3:+59547179 | None:intergenic |
| GCCCAACTCAGAGGACAAGG+AGG | 0.665613 | 1.3:-59549668 | MS.gene44179:CDS |
| AGAGAGAGGATTCTCCTGTG+AGG | 0.666974 | 1.3:-59560718 | MS.gene44179:CDS |
| CTTAAAGAAAGTGTTGAATG+GGG | 0.668377 | 1.3:-59549559 | MS.gene44179:CDS |
| TCAATCAAGATGATAAAGAG+GGG | 0.671596 | 1.3:-59560082 | MS.gene44179:CDS |
| CTCCGGAGAAGGTTAACTGG+TGG | 0.684514 | 1.3:-59550809 | MS.gene44179:CDS |
| AGACGAGCAGCCCAACTCAG+AGG | 0.691308 | 1.3:-59549677 | MS.gene44179:CDS |
| CGTTGAGGAAAAGGACGACG+AGG | 0.694156 | 1.3:-59549734 | MS.gene44179:CDS |
| GTTCTCGGAAAGATGCGAAG+AGG | 0.696193 | 1.3:-59550601 | MS.gene44179:CDS |
| GTTGAGAAAGATCTTCCTGG+AGG | 0.715658 | 1.3:-59547209 | MS.gene44179:CDS |
| GGAGCATTATGATGATGATG+GGG | 0.716741 | 1.3:-59560696 | MS.gene44179:CDS |
| AGTAGAGGGAAGTGACGACG+AGG | 0.721519 | 1.3:-59552658 | MS.gene44179:CDS |
| GAGATGGAAGAATTTGTCTG+GGG | 0.726459 | 1.3:-59550233 | MS.gene44179:CDS |
| TTACCATGAAAAGAGAGACG+AGG | 0.737984 | 1.3:-59560135 | MS.gene44179:CDS |
| ATATCATACAGATCACCTGG+CGG | 0.738427 | 1.3:-59551861 | MS.gene44179:intron |
| GAGGATACGACACATCACAC+TGG | 0.747563 | 1.3:-59552639 | MS.gene44179:intron |
| AGAGTCAAAAGAAAACAAGG+TGG | 0.787772 | 1.3:-59550264 | MS.gene44179:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59546429 | 59560774 | 59546429 | ID=MS.gene44179 |
| chr1.3 | mRNA | 59546429 | 59560774 | 59546429 | ID=MS.gene44179.t1;Parent=MS.gene44179 |
| chr1.3 | exon | 59560689 | 59560774 | 59560689 | ID=MS.gene44179.t1.exon1;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59560689 | 59560774 | 59560689 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59560032 | 59560223 | 59560032 | ID=MS.gene44179.t1.exon2;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59560032 | 59560223 | 59560032 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59552795 | 59552906 | 59552795 | ID=MS.gene44179.t1.exon3;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59552795 | 59552906 | 59552795 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59552640 | 59552691 | 59552640 | ID=MS.gene44179.t1.exon4;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59552640 | 59552691 | 59552640 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59551759 | 59551872 | 59551759 | ID=MS.gene44179.t1.exon5;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59551759 | 59551872 | 59551759 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59551580 | 59551676 | 59551580 | ID=MS.gene44179.t1.exon6;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59551580 | 59551676 | 59551580 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59551418 | 59551484 | 59551418 | ID=MS.gene44179.t1.exon7;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59551418 | 59551484 | 59551418 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59551261 | 59551320 | 59551261 | ID=MS.gene44179.t1.exon8;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59551261 | 59551320 | 59551261 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59550216 | 59550831 | 59550216 | ID=MS.gene44179.t1.exon9;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59550216 | 59550831 | 59550216 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59549441 | 59549817 | 59549441 | ID=MS.gene44179.t1.exon10;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59549441 | 59549817 | 59549441 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59548213 | 59548433 | 59548213 | ID=MS.gene44179.t1.exon11;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59548213 | 59548433 | 59548213 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59547181 | 59547265 | 59547181 | ID=MS.gene44179.t1.exon12;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59547181 | 59547265 | 59547181 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| chr1.3 | exon | 59546429 | 59546521 | 59546429 | ID=MS.gene44179.t1.exon13;Parent=MS.gene44179.t1 |
| chr1.3 | CDS | 59546429 | 59546521 | 59546429 | ID=cds.MS.gene44179.t1;Parent=MS.gene44179.t1 |
| Gene Sequence |
| Protein sequence |
