AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05535


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05535.t1 MTR_6g086575 92.308 390 26 1 23 412 1 386 0.0 747
MS.gene05535.t1 MTR_6g086625 92.564 390 26 1 23 412 1 387 0.0 746
MS.gene05535.t1 MTR_1g077480 88.041 393 44 1 23 412 1 393 0.0 714
MS.gene05535.t1 MTR_1g077520 78.061 392 80 4 20 411 3 388 0.0 636
MS.gene05535.t1 MTR_6g069140 75.068 369 90 1 46 412 33 401 0.0 592
MS.gene05535.t1 MTR_1g077520 78.402 338 67 4 20 357 3 334 0.0 553
MS.gene05535.t1 MTR_7g073650 64.928 345 120 1 64 407 38 382 2.23e-173 491
MS.gene05535.t1 MTR_7g073640 59.794 388 148 2 21 407 3 383 3.20e-173 490
MS.gene05535.t1 MTR_3g094160 63.372 344 122 2 67 407 59 401 2.54e-166 474
MS.gene05535.t1 MTR_1g078410 58.696 230 40 3 23 249 1 178 1.04e-79 244
MS.gene05535.t1 MTR_0279s0030 54.545 99 44 1 310 407 101 199 1.00e-29 115
MS.gene05535.t1 MTR_0279s0030 54.545 99 44 1 310 407 185 283 1.06e-28 114
MS.gene05535.t1 MTR_0279s0030 54.545 99 44 1 310 407 250 348 3.09e-28 114
MS.gene05535.t1 MTR_8g089725 26.952 397 188 16 29 339 4 384 4.42e-23 101
MS.gene05535.t1 MTR_8g089735 26.952 397 188 16 29 339 4 384 5.54e-23 101
MS.gene05535.t1 MTR_3g086580 25.250 400 195 14 30 338 3 389 4.63e-22 99.0
MS.gene05535.t1 MTR_2g096530 27.507 349 163 12 77 338 40 385 8.54e-22 98.2
MS.gene05535.t1 MTR_8g089745 25.758 396 193 14 29 339 4 383 2.35e-21 96.3
MS.gene05535.t1 MTR_8g089745 25.758 396 193 14 29 339 4 383 6.77e-21 95.5
MS.gene05535.t1 MTR_8g089740 25.570 395 192 15 31 339 1 379 1.40e-19 91.7
MS.gene05535.t1 MTR_3g086580 29.050 179 98 6 187 338 26 202 1.80e-13 72.4
MS.gene05535.t1 MTR_3g094180 46.575 73 33 2 343 409 7 79 1.02e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05535.t1 AT5G08370 72.676 355 96 1 57 410 19 373 0.0 563
MS.gene05535.t1 AT5G08370 74.052 343 89 0 68 410 5 347 0.0 559
MS.gene05535.t1 AT5G08380 60.052 383 151 1 25 407 4 384 9.78e-174 492
MS.gene05535.t1 AT3G56310 58.794 398 149 5 24 408 11 406 2.25e-168 479
MS.gene05535.t1 AT3G56310 55.025 398 140 6 24 408 11 382 8.40e-150 431
MS.gene05535.t1 AT5G08380 61.270 315 120 1 25 339 4 316 8.66e-145 415
MS.gene05535.t1 AT3G26380 26.074 349 168 12 77 338 42 387 1.41e-21 97.1
MS.gene05535.t1 AT3G26380 26.074 349 168 12 77 338 42 387 3.54e-21 96.3

Find 99 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATCTTAGTGGACATTT+TGG 0.164320 6.2:+84806430 None:intergenic
TAGTTGATGCAAGAGATTTA+TGG 0.246206 6.2:-84803696 MS.gene05535:CDS
ATGCCAAAACATTTGCTTCT+TGG 0.258381 6.2:-84805302 MS.gene05535:CDS
TCAACACTATCATTGGTTTC+GGG 0.264615 6.2:-84803579 MS.gene05535:CDS
ATCGTGCCCATTTCAGCATT+TGG 0.278804 6.2:-84804405 MS.gene05535:CDS
ACAAAGTAGCAGTGGTCTTA+TGG 0.293695 6.2:-84803786 MS.gene05535:CDS
GGGTACAAGTATATCAATTT+AGG 0.295779 6.2:-84805985 MS.gene05535:intron
TGCCAAAACATTTGCTTCTT+GGG 0.296895 6.2:-84805301 MS.gene05535:intron
TTAAAGATGTTAGGGAAATA+TGG 0.303082 6.2:-84805554 MS.gene05535:intron
TTTCCAACTTCGAGCATATC+AGG 0.305679 6.2:+84804451 None:intergenic
CTCAACACTATCATTGGTTT+CGG 0.310793 6.2:-84803580 MS.gene05535:CDS
AAGAGTTATATGTTGCAAAA+TGG 0.314815 6.2:-84806410 MS.gene05535:CDS
ATATTACAACCAACTAATAA+AGG 0.326535 6.2:+84804275 None:intergenic
TAGAGTAATGGTTAGATATA+TGG 0.345694 6.2:-84806543 MS.gene05535:CDS
CTAATGCCCAAATGCTGAAA+TGG 0.353093 6.2:+84804398 None:intergenic
TTCATCATCCATAGGTTCAT+TGG 0.353619 6.2:-84806579 MS.gene05535:CDS
CAAAAGCAACAATGATTTAG+AGG 0.357578 6.2:-84804073 MS.gene05535:intron
AGTTGATGCAAGAGATTTAT+GGG 0.361924 6.2:-84803695 MS.gene05535:CDS
TCGTGCCCATTTCAGCATTT+GGG 0.362441 6.2:-84804404 MS.gene05535:CDS
TACCCAAGAAGCAAATGTTT+TGG 0.367399 6.2:+84805299 None:intergenic
TAATAGATATAAACGACAAA+TGG 0.370119 6.2:-84804619 MS.gene05535:CDS
TATGATAACTGTCACAATAA+TGG 0.370763 6.2:-84805150 MS.gene05535:CDS
TGGAATAGTTGGAACCATTT+CGG 0.374598 6.2:-84806184 MS.gene05535:CDS
TATTACAACCAACTAATAAA+GGG 0.382437 6.2:+84804276 None:intergenic
TGATGTTCAGATGGAATAGT+TGG 0.389098 6.2:-84806195 MS.gene05535:intron
GTAGATAAACTTGGAGTTCA+AGG 0.392836 6.2:-84804105 MS.gene05535:intron
CAGGAGATATTAAAGATAAC+TGG 0.394203 6.2:-84804806 MS.gene05535:CDS
AGTGAAGCCTTATTAAAATC+TGG 0.394521 6.2:-84804999 MS.gene05535:CDS
CATATAACTCTTAATCTTAG+TGG 0.397865 6.2:+84806421 None:intergenic
TGAAGGAAACGTTGAAGCCT+TGG 0.402252 6.2:+84805528 None:intergenic
AAATAGGCCCCTTTATTAGT+TGG 0.402531 6.2:-84804284 MS.gene05535:intron
CATTGATATTGCAACCGAAA+TGG 0.410209 6.2:+84806170 None:intergenic
GCAGCACTCAACACTATCAT+TGG 0.412913 6.2:-84803586 MS.gene05535:intron
TCAATTGGCCTTGCTGCCCT+AGG 0.420111 6.2:-84806006 MS.gene05535:CDS
CACAGGAAAGGCTTGAAGTT+GGG 0.422305 6.2:-84805478 MS.gene05535:CDS
GAAAGTTTAATCCGAGATAC+AGG 0.426792 6.2:-84806148 MS.gene05535:intron
TAAACGTATGCCTGGATCAC+TGG 0.433474 6.2:-84805340 MS.gene05535:CDS
TTGAACTTCCAATGAACCTA+TGG 0.443657 6.2:+84806571 None:intergenic
ATTTCATGTCCCAGTGATCC+AGG 0.452806 6.2:+84805330 None:intergenic
AATAAGGCTTCACTCATTTG+TGG 0.457078 6.2:+84805008 None:intergenic
TTGGGAATCTATTCAGATGC+TGG 0.462560 6.2:-84805460 MS.gene05535:CDS
GACAAATGGGCATCTTATGC+TGG 0.464580 6.2:-84804605 MS.gene05535:CDS
GATATGCTCGAAGTTGGAAA+TGG 0.467367 6.2:-84804448 MS.gene05535:CDS
TAATGCCCAAATGCTGAAAT+GGG 0.470549 6.2:+84804399 None:intergenic
GGTAATAGTTGGAGAACAAC+AGG 0.470552 6.2:-84804825 MS.gene05535:CDS
TTCTAGCTCATTATATTCAC+AGG 0.476144 6.2:-84805495 MS.gene05535:CDS
AATAGATATAAACGACAAAT+GGG 0.476647 6.2:-84804618 MS.gene05535:CDS
AGTTCAAATAATTAGAGTAA+TGG 0.483730 6.2:-84806555 MS.gene05535:CDS
CAGCATTTGGGCATTAGCTA+AGG 0.486215 6.2:-84804392 MS.gene05535:intron
TGTGGTATTGTAGATAAACT+TGG 0.489705 6.2:-84804114 MS.gene05535:intron
AATTGATATACTTGTACCCT+AGG 0.490789 6.2:+84805989 None:intergenic
TCTTCTTCTCTATGTGTGAA+TGG 0.495440 6.2:-84804968 MS.gene05535:intron
AAGGCTTCAACGTTTCCTTC+AGG 0.495513 6.2:-84805526 MS.gene05535:CDS
GCTGATGCGATGGTGTCAAT+TGG 0.495784 6.2:-84806021 MS.gene05535:CDS
ACTTGTAGTAAACGTATGCC+TGG 0.499229 6.2:-84805348 MS.gene05535:CDS
GATCCTGATATGCTCGAAGT+TGG 0.500070 6.2:-84804454 MS.gene05535:CDS
TCACAGGAAAGGCTTGAAGT+TGG 0.502672 6.2:-84805479 MS.gene05535:CDS
GAAGGAAACGTTGAAGCCTT+GGG 0.511297 6.2:+84805529 None:intergenic
ATGGTATAAGTGTTAGAGAA+AGG 0.512588 6.2:-84805131 MS.gene05535:intron
ATGCAACAGTAACTGCATCT+TGG 0.514796 6.2:-84803747 MS.gene05535:CDS
TAATTACCATTCCATCCTCC+AGG 0.523855 6.2:+84804581 None:intergenic
AAGCGAGCAGCTGAAGATGA+TGG 0.525330 6.2:+84806473 None:intergenic
TATATGTTGCAAAATGGACT+TGG 0.531723 6.2:-84806404 MS.gene05535:CDS
CAATTGGCCTTGCTGCCCTA+GGG 0.536069 6.2:-84806005 MS.gene05535:CDS
ATGCAATATTCATCATCCAT+AGG 0.539579 6.2:-84806587 MS.gene05535:CDS
GAAAGGAAGATCCAGCAACA+TGG 0.542444 6.2:-84804860 MS.gene05535:CDS
CTTATGCTGGACCTGGAGGA+TGG 0.545149 6.2:-84804592 MS.gene05535:CDS
TGGGCATCTTATGCTGGACC+TGG 0.550800 6.2:-84804599 MS.gene05535:CDS
TGGTTGTAATATTCAAGCAA+TGG 0.558395 6.2:-84804264 MS.gene05535:CDS
GCTCATTATATTCACAGGAA+AGG 0.565444 6.2:-84805490 MS.gene05535:CDS
AAACATAGATACCTGTATCT+CGG 0.568820 6.2:+84806137 None:intergenic
TGGGAATCTATTCAGATGCT+GGG 0.568871 6.2:-84805459 MS.gene05535:intron
TATCATTTCAGCTGATGCGA+TGG 0.569529 6.2:-84806031 MS.gene05535:intron
AAACGTATGCCTGGATCACT+GGG 0.570234 6.2:-84805339 MS.gene05535:CDS
CAACACTATCATTGGTTTCG+GGG 0.574558 6.2:-84803578 MS.gene05535:CDS
ACTGCATCTTGGTCAGACAT+AGG 0.575528 6.2:-84803736 MS.gene05535:CDS
GGAACTTAATCGAGACTCAC+AGG 0.580260 6.2:-84805735 MS.gene05535:intron
TTAGGGAAATATGGTTCCCA+AGG 0.580295 6.2:-84805545 MS.gene05535:intron
CACTAGTAACAAAGTAGCAG+TGG 0.584719 6.2:-84803794 MS.gene05535:CDS
AAAGGAAGATCCAGCAACAT+GGG 0.591497 6.2:-84804859 MS.gene05535:CDS
GCTACTTTGTTACTAGTGAG+AGG 0.595510 6.2:+84803799 None:intergenic
GCTAGAAGCTTGATTCCTGA+AGG 0.597203 6.2:+84805511 None:intergenic
GCTGGACCTGGAGGATGGAA+TGG 0.600529 6.2:-84804587 MS.gene05535:intron
AACACTATCATTGGTTTCGG+GGG 0.602809 6.2:-84803577 MS.gene05535:CDS
ATGCTCGAAGTTGGAAATGG+AGG 0.603679 6.2:-84804445 MS.gene05535:CDS
AAGCCTTATTAAAATCTGGA+AGG 0.610362 6.2:-84804995 MS.gene05535:CDS
ATTACAACCAACTAATAAAG+GGG 0.610550 6.2:+84804277 None:intergenic
GATGGTATAGCATACCCCAT+GGG 0.612388 6.2:+84806371 None:intergenic
ATATTAAAGATAACTGGCAT+CGG 0.619640 6.2:-84804800 MS.gene05535:intron
ACTTGTACCCTAGGGCAGCA+AGG 0.626170 6.2:+84805998 None:intergenic
GAAGTTATTGCAGTAAACCA+AGG 0.635887 6.2:-84804209 MS.gene05535:intron
ATTGATATACTTGTACCCTA+GGG 0.641607 6.2:+84805990 None:intergenic
ATGGTATAGCATACCCCATG+GGG 0.644504 6.2:+84806372 None:intergenic
GCATCTTATGCTGGACCTGG+AGG 0.645529 6.2:-84804596 MS.gene05535:CDS
CAATAATATTCAGCAACACG+AGG 0.675415 6.2:+84806504 None:intergenic
AAATGGAGGCATGACAACAG+AGG 0.691145 6.2:-84804431 MS.gene05535:CDS
TGGTATAGCATACCCCATGG+GGG 0.692128 6.2:+84806373 None:intergenic
TGATGCAAGAGATTTATGGG+AGG 0.716729 6.2:-84803692 MS.gene05535:intron
GGTATAGCATACCCCATGGG+GGG 0.727686 6.2:+84806374 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAACATACAAATTAA+TGG + chr6.2:84804573-84804592 None:intergenic 10.0%
!!! TTTTTTTTAAACTATTTTAC+TGG - chr6.2:84805939-84805958 MS.gene05535:intron 10.0%
!! AACAACATAAGATTATAAAT+AGG + chr6.2:84805033-84805052 None:intergenic 15.0%
!! AGAAAAATTTGAATCAATAT+TGG + chr6.2:84805058-84805077 None:intergenic 15.0%
!! AGAAAATGAAATATCAATTA+TGG + chr6.2:84805337-84805356 None:intergenic 15.0%
!! CATCATAAAAATAATTGATT+AGG + chr6.2:84804040-84804059 None:intergenic 15.0%
!! GTATTAATTTCTTCAATAAA+GGG - chr6.2:84806090-84806109 MS.gene05535:intron 15.0%
!! TAAACACCATAAAATATAAA+GGG + chr6.2:84806219-84806238 None:intergenic 15.0%
!! TATACTTTCATGAATTTAAT+TGG + chr6.2:84804011-84804030 None:intergenic 15.0%
!! TGAAAAACAATAAATTCATA+TGG - chr6.2:84806617-84806636 MS.gene05535:intron 15.0%
!! TGTATTAATTTCTTCAATAA+AGG - chr6.2:84806089-84806108 MS.gene05535:intron 15.0%
!! TTAAACACCATAAAATATAA+AGG + chr6.2:84806220-84806239 None:intergenic 15.0%
!!! ATTGATTCAAATTTTTCTTT+AGG - chr6.2:84805060-84805079 MS.gene05535:intron 15.0%
!!! TTGATTCAAATTTTTCTTTA+GGG - chr6.2:84805061-84805080 MS.gene05535:intron 15.0%
!! AACTGTAAAAATAATAGCTT+AGG + chr6.2:84804160-84804179 None:intergenic 20.0%
!! AATAGATATAAACGACAAAT+GGG - chr6.2:84805632-84805651 MS.gene05535:intron 20.0%
!! ACTGTAAAAATAATAGCTTA+GGG + chr6.2:84804159-84804178 None:intergenic 20.0%
!! AGTTCAAATAATTAGAGTAA+TGG - chr6.2:84803695-84803714 MS.gene05535:CDS 20.0%
!! ATATTACAACCAACTAATAA+AGG + chr6.2:84805978-84805997 None:intergenic 20.0%
!! ATCTAATATCCAAACATTAA+TGG + chr6.2:84805779-84805798 None:intergenic 20.0%
!! ATGACAAATATAGATAAAGA+TGG + chr6.2:84803900-84803919 None:intergenic 20.0%
!! CACATATGAGAAATAAATAT+TGG + chr6.2:84805756-84805775 None:intergenic 20.0%
!! GAATCATAAAAGGAAAAAAA+TGG + chr6.2:84803961-84803980 None:intergenic 20.0%
!! TAATAGATATAAACGACAAA+TGG - chr6.2:84805631-84805650 MS.gene05535:intron 20.0%
!! TATTACAACCAACTAATAAA+GGG + chr6.2:84805977-84805996 None:intergenic 20.0%
!!! AATTGCTTTTTTGAAACATA+GGG - chr6.2:84805367-84805386 MS.gene05535:intron 20.0%
!!! AATTTGATGATTTCTTACAT+CGG + chr6.2:84803567-84803586 None:intergenic 20.0%
!!! ATAAATTCATATGGTTTTGA+TGG - chr6.2:84806626-84806645 MS.gene05535:intron 20.0%
!!! CTATTTTACTGGATTTAAAT+AGG - chr6.2:84805950-84805969 MS.gene05535:intron 20.0%
!!! TAATTGCTTTTTTGAAACAT+AGG - chr6.2:84805366-84805385 MS.gene05535:intron 20.0%
!!! TTATTTTTATGATGTTCAGA+TGG - chr6.2:84804046-84804065 MS.gene05535:intron 20.0%
!!! TTCTTTCCCTTTATATTTTA+TGG - chr6.2:84806210-84806229 MS.gene05535:intron 20.0%
!!! TTTTTTTTCAGATGATTGTT+GGG - chr6.2:84804491-84804510 MS.gene05535:intron 20.0%
! AAATTAGTTGGTCATGATAT+AGG + chr6.2:84805586-84805605 None:intergenic 25.0%
! AAGAGTTATATGTTGCAAAA+TGG - chr6.2:84803840-84803859 MS.gene05535:intron 25.0%
! AATATTGCATAACCTTATAG+TGG + chr6.2:84803653-84803672 None:intergenic 25.0%
! ACAAGTATATCAATTTAGGT+AGG - chr6.2:84804269-84804288 MS.gene05535:CDS 25.0%
! ACTTCTTCCTAAAAATTCTA+TGG - chr6.2:84806410-84806429 MS.gene05535:CDS 25.0%
! ATATTAAAGATAACTGGCAT+CGG - chr6.2:84805450-84805469 MS.gene05535:intron 25.0%
! ATTACAACCAACTAATAAAG+GGG + chr6.2:84805976-84805995 None:intergenic 25.0%
! CATATAACTCTTAATCTTAG+TGG + chr6.2:84803832-84803851 None:intergenic 25.0%
! CTTTATGTGTGAATCATAAA+AGG + chr6.2:84803971-84803990 None:intergenic 25.0%
! TAGAGTAATGGTTAGATATA+TGG - chr6.2:84803707-84803726 MS.gene05535:CDS 25.0%
! TATGATAACTGTCACAATAA+TGG - chr6.2:84805100-84805119 MS.gene05535:intron 25.0%
! TATGTTCTTCAAATGCAATT+AGG - chr6.2:84805151-84805170 MS.gene05535:CDS 25.0%
! TATTACTTTGTCTCAACAAT+AGG + chr6.2:84805906-84805925 None:intergenic 25.0%
! TTAAAGATGTTAGGGAAATA+TGG - chr6.2:84804696-84804715 MS.gene05535:intron 25.0%
! TTAACTTTCAACTCAAAACA+TGG - chr6.2:84806278-84806297 MS.gene05535:intron 25.0%
!!! ATTGCTTTTTTGAAACATAG+GGG - chr6.2:84805368-84805387 MS.gene05535:intron 25.0%
!!! GTTTTTTTTCAGATGATTGT+TGG - chr6.2:84804490-84804509 MS.gene05535:intron 25.0%
AAACATAGATACCTGTATCT+CGG + chr6.2:84804116-84804135 None:intergenic 30.0%
AATTGATATACTTGTACCCT+AGG + chr6.2:84804264-84804283 None:intergenic 30.0%
AGTATATCAATTTAGGTAGG+TGG - chr6.2:84804272-84804291 MS.gene05535:CDS 30.0%
ATCTATTATAGAAGTCATGC+TGG + chr6.2:84805619-84805638 None:intergenic 30.0%
ATGCAATATTCATCATCCAT+AGG - chr6.2:84803663-84803682 MS.gene05535:intron 30.0%
ATGGTATAAGTGTTAGAGAA+AGG - chr6.2:84805119-84805138 MS.gene05535:intron 30.0%
ATTGATATACTTGTACCCTA+GGG + chr6.2:84804263-84804282 None:intergenic 30.0%
CAAAAGCAACAATGATTTAG+AGG - chr6.2:84806177-84806196 MS.gene05535:CDS 30.0%
CAGGAGATATTAAAGATAAC+TGG - chr6.2:84805444-84805463 MS.gene05535:intron 30.0%
CCTAAAAATTCTATGGAGAT+AGG - chr6.2:84806417-84806436 MS.gene05535:CDS 30.0%
CTGACAAGTTAAAGATGTTA+GGG - chr6.2:84804688-84804707 MS.gene05535:intron 30.0%
GGGGATGAAATAAAATTAGT+TGG + chr6.2:84805598-84805617 None:intergenic 30.0%
GGGTACAAGTATATCAATTT+AGG - chr6.2:84804265-84804284 MS.gene05535:CDS 30.0%
TCTATTATAGAAGTCATGCT+GGG + chr6.2:84805618-84805637 None:intergenic 30.0%
TGGTTGTAATATTCAAGCAA+TGG - chr6.2:84805986-84806005 MS.gene05535:CDS 30.0%
TGTGGTATTGTAGATAAACT+TGG - chr6.2:84806136-84806155 MS.gene05535:intron 30.0%
TTTCATACGTTGTGTAAATC+AGG - chr6.2:84805216-84805235 MS.gene05535:intron 30.0%
! AGTTGATGCAAGAGATTTAT+GGG - chr6.2:84806555-84806574 MS.gene05535:CDS 30.0%
! CCTATCTCCATAGAATTTTT+AGG + chr6.2:84806420-84806439 None:intergenic 30.0%
! TAGTTGATGCAAGAGATTTA+TGG - chr6.2:84806554-84806573 MS.gene05535:CDS 30.0%
! TATATGTTGCAAAATGGACT+TGG - chr6.2:84803846-84803865 MS.gene05535:intron 30.0%
! TCATATGTGCCATTAATGTT+TGG - chr6.2:84805767-84805786 MS.gene05535:intron 30.0%
!! AAGCCTTATTAAAATCTGGA+AGG - chr6.2:84805255-84805274 MS.gene05535:intron 30.0%
!! AGTGAAGCCTTATTAAAATC+TGG - chr6.2:84805251-84805270 MS.gene05535:intron 30.0%
!! CATTAGTTTGCATTTATCGT+AGG + chr6.2:84806315-84806334 None:intergenic 30.0%
!! CTAACATCTTTAACTTGTCA+GGG + chr6.2:84804689-84804708 None:intergenic 30.0%
!! CTTAATCTTAGTGGACATTT+TGG + chr6.2:84803823-84803842 None:intergenic 30.0%
!! TAACATCTTTAACTTGTCAG+GGG + chr6.2:84804688-84804707 None:intergenic 30.0%
!! TGACCTTCCAGATTTTAATA+AGG + chr6.2:84805261-84805280 None:intergenic 30.0%
!! TTCTAGCTCATTATATTCAC+AGG - chr6.2:84804755-84804774 MS.gene05535:intron 30.0%
!!! TTTTTTGAAACATAGGGGAA+AGG - chr6.2:84805373-84805392 MS.gene05535:intron 30.0%
AAATAGGCCCCTTTATTAGT+TGG - chr6.2:84805966-84805985 MS.gene05535:intron 35.0%
AAATTCTATGGAGATAGGTG+TGG - chr6.2:84806422-84806441 MS.gene05535:CDS 35.0%
AATAAGGCTTCACTCATTTG+TGG + chr6.2:84805245-84805264 None:intergenic 35.0%
AATTCTATGGAGATAGGTGT+GGG - chr6.2:84806423-84806442 MS.gene05535:CDS 35.0%
ATGCCAAAACATTTGCTTCT+TGG - chr6.2:84804948-84804967 MS.gene05535:intron 35.0%
CAATAATATTCAGCAACACG+AGG + chr6.2:84803749-84803768 None:intergenic 35.0%
CATCAAATTGCTTGCATTGT+TGG - chr6.2:84803578-84803597 MS.gene05535:CDS 35.0%
CATGCATAACATTACTAGTG+AGG + chr6.2:84805700-84805719 None:intergenic 35.0%
CATTGATATTGCAACCGAAA+TGG + chr6.2:84804083-84804102 None:intergenic 35.0%
CCAAAAATGTGGGTAATAGT+TGG - chr6.2:84805414-84805433 MS.gene05535:intron 35.0%
CCTGACAAGTTAAAGATGTT+AGG - chr6.2:84804687-84804706 MS.gene05535:intron 35.0%
CTATTATAGAAGTCATGCTG+GGG + chr6.2:84805617-84805636 None:intergenic 35.0%
GAAAGTTTAATCCGAGATAC+AGG - chr6.2:84804102-84804121 MS.gene05535:CDS 35.0%
GAAGTTATTGCAGTAAACCA+AGG - chr6.2:84806041-84806060 MS.gene05535:intron 35.0%
GCTCATTATATTCACAGGAA+AGG - chr6.2:84804760-84804779 MS.gene05535:intron 35.0%
GTAGATAAACTTGGAGTTCA+AGG - chr6.2:84806145-84806164 MS.gene05535:intron 35.0%
TAATGCCCAAATGCTGAAAT+GGG + chr6.2:84805854-84805873 None:intergenic 35.0%
TCAAGAAAGTCTACTTACCT+TGG + chr6.2:84806061-84806080 None:intergenic 35.0%
TCTTCTTCTCTATGTGTGAA+TGG - chr6.2:84805282-84805301 MS.gene05535:intron 35.0%
TGATGTTCAGATGGAATAGT+TGG - chr6.2:84804055-84804074 MS.gene05535:intron 35.0%
TGCCAAAACATTTGCTTCTT+GGG - chr6.2:84804949-84804968 MS.gene05535:intron 35.0%
TGGAATAGTTGGAACCATTT+CGG - chr6.2:84804066-84804085 MS.gene05535:intron 35.0%
TTCAACTCAAAACATGGATC+TGG - chr6.2:84806284-84806303 MS.gene05535:intron 35.0%
TTCATCATCCATAGGTTCAT+TGG - chr6.2:84803671-84803690 MS.gene05535:intron 35.0%
TTGAACTTCCAATGAACCTA+TGG + chr6.2:84803682-84803701 None:intergenic 35.0%
! CCAACTATTACCCACATTTT+TGG + chr6.2:84805417-84805436 None:intergenic 35.0%
! TACCCAAGAAGCAAATGTTT+TGG + chr6.2:84804954-84804973 None:intergenic 35.0%
!! CCTAACATCTTTAACTTGTC+AGG + chr6.2:84804690-84804709 None:intergenic 35.0%
!! CTCAACACTATCATTGGTTT+CGG - chr6.2:84806670-84806689 MS.gene05535:intron 35.0%
!! TCAACACTATCATTGGTTTC+GGG - chr6.2:84806671-84806690 MS.gene05535:intron 35.0%
!! TTTTTCAGATGATTGTTGGG+CGG - chr6.2:84804494-84804513 MS.gene05535:intron 35.0%
AAAGGAAGATCCAGCAACAT+GGG - chr6.2:84805391-84805410 MS.gene05535:intron 40.0%
ACTTGTAGTAAACGTATGCC+TGG - chr6.2:84804902-84804921 MS.gene05535:intron 40.0%
ATGCAACAGTAACTGCATCT+TGG - chr6.2:84806503-84806522 MS.gene05535:CDS 40.0%
CACTAGTAACAAAGTAGCAG+TGG - chr6.2:84806456-84806475 MS.gene05535:CDS 40.0%
CTAATGCCCAAATGCTGAAA+TGG + chr6.2:84805855-84805874 None:intergenic 40.0%
GATATGCTCGAAGTTGGAAA+TGG - chr6.2:84805802-84805821 MS.gene05535:intron 40.0%
GGTAATAGTTGGAGAACAAC+AGG - chr6.2:84805425-84805444 MS.gene05535:intron 40.0%
TAATTACCATTCCATCCTCC+AGG + chr6.2:84805672-84805691 None:intergenic 40.0%
TATCATTTCAGCTGATGCGA+TGG - chr6.2:84804219-84804238 MS.gene05535:CDS 40.0%
TGATGCAAGAGATTTATGGG+AGG - chr6.2:84806558-84806577 MS.gene05535:CDS 40.0%
TGGGAATCTATTCAGATGCT+GGG - chr6.2:84804791-84804810 MS.gene05535:intron 40.0%
TTAGGGAAATATGGTTCCCA+AGG - chr6.2:84804705-84804724 MS.gene05535:intron 40.0%
TTGGGAATCTATTCAGATGC+TGG - chr6.2:84804790-84804809 MS.gene05535:intron 40.0%
TTTCCAACTTCGAGCATATC+AGG + chr6.2:84805802-84805821 None:intergenic 40.0%
! ACAAAGTAGCAGTGGTCTTA+TGG - chr6.2:84806464-84806483 MS.gene05535:CDS 40.0%
! GCTACTTTGTTACTAGTGAG+AGG + chr6.2:84806454-84806473 None:intergenic 40.0%
! GTGTGAATGGTGAGTTGAAT+TGG - chr6.2:84805295-84805314 MS.gene05535:intron 40.0%
!! AACACTATCATTGGTTTCGG+GGG - chr6.2:84806673-84806692 MS.gene05535:intron 40.0%
!! CAACACTATCATTGGTTTCG+GGG - chr6.2:84806672-84806691 MS.gene05535:intron 40.0%
AAACGTATGCCTGGATCACT+GGG - chr6.2:84804911-84804930 MS.gene05535:intron 45.0%
AAGGCTTCAACGTTTCCTTC+AGG - chr6.2:84804724-84804743 MS.gene05535:intron 45.0%
ACTGCATCTTGGTCAGACAT+AGG - chr6.2:84806514-84806533 MS.gene05535:CDS 45.0%
AGATGGTATAGCATACCCCA+TGG + chr6.2:84803883-84803902 None:intergenic 45.0%
AGCAACATGGGCCAAAAATG+TGG - chr6.2:84805403-84805422 MS.gene05535:intron 45.0%
ATCGTGCCCATTTCAGCATT+TGG - chr6.2:84805845-84805864 MS.gene05535:intron 45.0%
ATGCTCGAAGTTGGAAATGG+AGG - chr6.2:84805805-84805824 MS.gene05535:intron 45.0%
ATGGTATAGCATACCCCATG+GGG + chr6.2:84803881-84803900 None:intergenic 45.0%
ATTTCATGTCCCAGTGATCC+AGG + chr6.2:84804923-84804942 None:intergenic 45.0%
CACACACACACACCACTATA+AGG - chr6.2:84803638-84803657 MS.gene05535:intron 45.0%
CACAGGAAAGGCTTGAAGTT+GGG - chr6.2:84804772-84804791 MS.gene05535:intron 45.0%
CAGCATTTGGGCATTAGCTA+AGG - chr6.2:84805858-84805877 MS.gene05535:intron 45.0%
GAAAGGAAGATCCAGCAACA+TGG - chr6.2:84805390-84805409 MS.gene05535:intron 45.0%
GAAGGAAACGTTGAAGCCTT+GGG + chr6.2:84804724-84804743 None:intergenic 45.0%
GACAAATGGGCATCTTATGC+TGG - chr6.2:84805645-84805664 MS.gene05535:intron 45.0%
GATCCTGATATGCTCGAAGT+TGG - chr6.2:84805796-84805815 MS.gene05535:intron 45.0%
GATGGTATAGCATACCCCAT+GGG + chr6.2:84803882-84803901 None:intergenic 45.0%
GCAACATGGGCCAAAAATGT+GGG - chr6.2:84805404-84805423 MS.gene05535:intron 45.0%
GCAGCACTCAACACTATCAT+TGG - chr6.2:84806664-84806683 MS.gene05535:intron 45.0%
GCTAGAAGCTTGATTCCTGA+AGG + chr6.2:84804742-84804761 None:intergenic 45.0%
GGAACTTAATCGAGACTCAC+AGG - chr6.2:84804515-84804534 MS.gene05535:intron 45.0%
GGGAGGTAAGAGAGTTAGTT+AGG - chr6.2:84806575-84806594 MS.gene05535:CDS 45.0%
TAAACGTATGCCTGGATCAC+TGG - chr6.2:84804910-84804929 MS.gene05535:intron 45.0%
TCACAGGAAAGGCTTGAAGT+TGG - chr6.2:84804771-84804790 MS.gene05535:intron 45.0%
TCGTGCCCATTTCAGCATTT+GGG - chr6.2:84805846-84805865 MS.gene05535:intron 45.0%
TGAAACTCACACGCTTCTTG+TGG - chr6.2:84806118-84806137 MS.gene05535:intron 45.0%
TGAAGGAAACGTTGAAGCCT+TGG + chr6.2:84804725-84804744 None:intergenic 45.0%
! AAATGGAGGCATGACAACAG+AGG - chr6.2:84805819-84805838 MS.gene05535:intron 45.0%
!!! ACATTTTTGGCCCATGTTGC+TGG + chr6.2:84805404-84805423 None:intergenic 45.0%
AAGCGAGCAGCTGAAGATGA+TGG + chr6.2:84803780-84803799 None:intergenic 50.0%
TGGTATAGCATACCCCATGG+GGG + chr6.2:84803880-84803899 None:intergenic 50.0%
! GCTGATGCGATGGTGTCAAT+TGG - chr6.2:84804229-84804248 MS.gene05535:CDS 50.0%
ACTTGTACCCTAGGGCAGCA+AGG + chr6.2:84804255-84804274 None:intergenic 55.0%
CTTATGCTGGACCTGGAGGA+TGG - chr6.2:84805658-84805677 MS.gene05535:intron 55.0%
GCATCTTATGCTGGACCTGG+AGG - chr6.2:84805654-84805673 MS.gene05535:intron 55.0%
GGTATAGCATACCCCATGGG+GGG + chr6.2:84803879-84803898 None:intergenic 55.0%
TGGGCATCTTATGCTGGACC+TGG - chr6.2:84805651-84805670 MS.gene05535:intron 55.0%
!! CAATTGGCCTTGCTGCCCTA+GGG - chr6.2:84804245-84804264 MS.gene05535:CDS 55.0%
!! TCAATTGGCCTTGCTGCCCT+AGG - chr6.2:84804244-84804263 MS.gene05535:CDS 55.0%
ACTTGGTCAGACACCCCCCA+TGG - chr6.2:84803863-84803882 MS.gene05535:intron 60.0%
CTTGGTCAGACACCCCCCAT+GGG - chr6.2:84803864-84803883 MS.gene05535:intron 60.0%
GCTGGACCTGGAGGATGGAA+TGG - chr6.2:84805663-84805682 MS.gene05535:intron 60.0%
TTGGTCAGACACCCCCCATG+GGG - chr6.2:84803865-84803884 MS.gene05535:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 84803557 84806715 84803557 ID=MS.gene05535
chr6.2 mRNA 84803557 84806715 84803557 ID=MS.gene05535.t1;Parent=MS.gene05535
chr6.2 exon 84806704 84806715 84806704 ID=MS.gene05535.t1.exon1;Parent=MS.gene05535.t1
chr6.2 CDS 84806704 84806715 84806704 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84806386 84806612 84806386 ID=MS.gene05535.t1.exon2;Parent=MS.gene05535.t1
chr6.2 CDS 84806386 84806612 84806386 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84806149 84806207 84806149 ID=MS.gene05535.t1.exon3;Parent=MS.gene05535.t1
chr6.2 CDS 84806149 84806207 84806149 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84805986 84806042 84805986 ID=MS.gene05535.t1.exon4;Parent=MS.gene05535.t1
chr6.2 CDS 84805986 84806042 84805986 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84805736 84805770 84805736 ID=MS.gene05535.t1.exon5;Parent=MS.gene05535.t1
chr6.2 CDS 84805736 84805770 84805736 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84805460 84805563 84805460 ID=MS.gene05535.t1.exon6;Parent=MS.gene05535.t1
chr6.2 CDS 84805460 84805563 84805460 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84805302 84805377 84805302 ID=MS.gene05535.t1.exon7;Parent=MS.gene05535.t1
chr6.2 CDS 84805302 84805377 84805302 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84805132 84805190 84805132 ID=MS.gene05535.t1.exon8;Parent=MS.gene05535.t1
chr6.2 CDS 84805132 84805190 84805132 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84804969 84805034 84804969 ID=MS.gene05535.t1.exon9;Parent=MS.gene05535.t1
chr6.2 CDS 84804969 84805034 84804969 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84804801 84804884 84804801 ID=MS.gene05535.t1.exon10;Parent=MS.gene05535.t1
chr6.2 CDS 84804801 84804884 84804801 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84804588 84804652 84804588 ID=MS.gene05535.t1.exon11;Parent=MS.gene05535.t1
chr6.2 CDS 84804588 84804652 84804588 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84804393 84804475 84804393 ID=MS.gene05535.t1.exon12;Parent=MS.gene05535.t1
chr6.2 CDS 84804393 84804475 84804393 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84804210 84804300 84804210 ID=MS.gene05535.t1.exon13;Parent=MS.gene05535.t1
chr6.2 CDS 84804210 84804300 84804210 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84804074 84804123 84804074 ID=MS.gene05535.t1.exon14;Parent=MS.gene05535.t1
chr6.2 CDS 84804074 84804123 84804074 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84803693 84803833 84803693 ID=MS.gene05535.t1.exon15;Parent=MS.gene05535.t1
chr6.2 CDS 84803693 84803833 84803693 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
chr6.2 exon 84803557 84803604 84803557 ID=MS.gene05535.t1.exon16;Parent=MS.gene05535.t1
chr6.2 CDS 84803557 84803604 84803557 ID=cds.MS.gene05535.t1;Parent=MS.gene05535.t1
Gene Sequence

>MS.gene05535

ATGTTTGCCGATGTAAGAAATCATCAAATTGCTTGCATTGTTGGTCTTATACACACACACACACACACACACACACACACACACACACACACACCACTATAAGGTTATGCAATATTCATCATCCATAGGTTCATTGGAAGTTCAAATAATTAGAGTAATGGTTAGATATATGGTGCTTGCATTATGTATCCTCGTGTTGCTGAATATTATTGCAAGTGTTCCATCATCTTCAGCTGCTCGCTTATTAGAAAACAACAATGTAACCAAAATGTCCACTAAGATTAAGAGTTATATGTTGCAAAATGGACTTGGTCAGACACCCCCCATGGGGTATGCTATACCATCTTTATCTATATTTGTCATTCTCATTCATTGTTCATTCAAATTCAAATAAAATATATCCATTTTTTTCCTTTTATGATTCACACATAAAGAACACACATAATTTTCTCCAATTAAATTCATGAAAGTATATAATTTCCTAATCAATTATTTTTATGATGTTCAGATGGAATAGTTGGAACCATTTCGGTTGCAATATCAATGAAAGTTTAATCCGAGATACAGGTATCTATGTTTATTATCATTATTATGATGTTCCCTAAGCTATTATTTTTACAGTTTAGATATATGTAATTCAATTGATCTAAACTATATTGATTTATCATTTCAGCTGATGCGATGGTGTCAATTGGCCTTGCTGCCCTAGGGTACAAGTATATCAATTTAGGTAGGTGGCAACTACAACGATCATTGCTGCTACTATATTTACTCTTTATTTTGTTGATGTGTGAATATTTAGTTAATAATTTTTTAAAGTTTTTTGTAAAGAATTTTTTAAAATATTAATGTATTTTTTTTATTATGTGATTATATAGACATTTATTTATTTATTTATTTATAAAAACATATTTTAATAATATAAATTTGCATGTTTTTTTTCAGATGATTGTTGGGCGGAACTTAATCGAGACTCACAGGTATATAATATATATCGTCTTTAAAAAAAAATTCCATTAATTTGTATGTTTATTTTCTTCATGTACTTTTATGTGTCTATTTTAAAACAAAGATATATATAAGTTAATTGAATTTAAATTAATACATTAATATTTCGTAGTGTTTATACCCCTGACAAGTTAAAGATGTTAGGGAAATATGGTTCCCAAGGCTTCAACGTTTCCTTCAGGAATCAAGCTTCTAGCTCATTATATTCACAGGAAAGGCTTGAAGTTGGGAATCTATTCAGATGCTGGGTATCAACATATTAAATTTTTTGTATGATCATGACTATGATTTTTCAAGCATTATTTATGATCACTTACGATTGCTATGCAGAAATCAAACTTGTAGTAAACGTATGCCTGGATCACTGGGACATGAAATACAAGATGCCAAAACATTTGCTTCTTGGGTATATTATATATACATACATTATTTGAAAGTCATTTTTCACTTTTATCAACATTATATCCTATTTATAATCTTATGTTGTTAACCAATATTGATTCAAATTTTTCTTTAGGGAGTCGACTATTTGAAGTATGATAACTGTCACAATAATGGTATAAGTGTTAGAGAAAGGTATTTAATTTATGTTCTTCAAATGCAATTAGGTATATCTACATATTTTGTAAAAAAAAAAATTGTACTTACTAGTTTCATACGTTGTGTAAATCAGGTATCCACAAATGAGTGAAGCCTTATTAAAATCTGGAAGGTCAATCTTCTTCTCTATGTGTGAATGGTGAGTTGAATTGGTGATAATGTTTCTCATCCATAATTGATATTTCATTTTCTATTTCATTATAATTGCTTTTTTGAAACATAGGGGAAAGGAAGATCCAGCAACATGGGCCAAAAATGTGGGTAATAGTTGGAGAACAACAGGAGATATTAAAGATAACTGGCATCGGTAAAATTAATATGATAACTCACATTCTCACATTATACGATGTCTATTTTTGCATAATAATTGAGTCATGAAAAATAAAAAATAAAAAAAATCAATTATTTTCTTCATTTTCCTATATCATGACCAACTAATTTTATTTCATCCCCAGCATGACTTCTATAATAGATATAAACGACAAATGGGCATCTTATGCTGGACCTGGAGGATGGAATGGTAATTAACTAACCTCACTAGTAATGTTATGCATGTTAAACTTAAGATCATTACAAGTACATCAAACTCCAATATTTATTTCTCATATGTGCCATTAATGTTTGGATATTAGATCCTGATATGCTCGAAGTTGGAAATGGAGGCATGACAACAGAGGAATATCGTGCCCATTTCAGCATTTGGGCATTAGCTAAGGTGCATTAAATAATTTTTATATACCTATTGTTGAGACAAAGTAATATGTCATTAATTCGTTTTTTTTAAACTATTTTACTGGATTTAAATAGGCCCCTTTATTAGTTGGTTGTAATATTCAAGCAATGGATAATATCACATATGAATTGATAAGCAACTCTGAAGTTATTGCAGTAAACCAAGGTAAGTAGACTTTCTTGAACGAAAAATGTATTAATTTCTTCAATAAAGGGTGTTTTGAAACTCACACGCTTCTTGTGGTATTGTAGATAAACTTGGAGTTCAAGGAAAGAAAGTCAAAAGCAACAATGATTTAGAGGTGACATTATTTTCTTTCCCTTTATATTTTATGGTGTTTAAGTTTGATTTCTTACAACTTATAATGATACTAAATTTGTTTAACTTTCAACTCAAAACATGGATCTGGAGTAGCCTACGATAAATGCAAACTAATGTTACTTTATAATGAAATCATTTGTGTATTATATACATACATATGCATGTGAAAATTGTCTCAGTTCTTGCATACAACTTCTTCCTAAAAATTCTATGGAGATAGGTGTGGGCAAGTCCTCTCACTAGTAACAAAGTAGCAGTGGTCTTATGGAATAGAAGTTCATCAAATGCAACAGTAACTGCATCTTGGTCAGACATAGGTCTGAAATCAGAAACTATAGTTGATGCAAGAGATTTATGGGAGGTAAGAGAGTTAGTTAGGTTCATTTTTCATTGTATTGTGAAAAACAATAAATTCATATGGTTTTGATGGTGCGTAATGATTTTTGCAGCACTCAACACTATCATTGGTTTCGGGGGTGAATCTATTAAAAATGTAA

Protein sequence

>MS.gene05535.t1

MFADVMQYSSSIGSLEVQIIRVMVRYMVLALCILVLLNIIASVPSSSAARLLENNNVTKMSTKIKSYMLQNGLGQTPPMGWNSWNHFGCNINESLIRDTADAMVSIGLAALGYKYINLDDCWAELNRDSQGNMVPKASTFPSGIKLLAHYIHRKGLKLGIYSDAGNQTCSKRMPGSLGHEIQDAKTFASWGVDYLKYDNCHNNGISVRERYPQMSEALLKSGRSIFFSMCEWGKEDPATWAKNVGNSWRTTGDIKDNWHRMTSIIDINDKWASYAGPGGWNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLVGCNIQAMDNITYELISNSEVIAVNQDKLGVQGKKVKSNNDLEVWASPLTSNKVAVVLWNRSSSNATVTASWSDIGLKSETIVDARDLWEHSTLSLVSGVNLLKM