Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056010.t1 | XP_003591216.3 | 93.3 | 390 | 24 | 2 | 1 | 389 | 1 | 389 | 3.80E-209 | 737.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056010.t1 | A0A396JXF9 | 93.1 | 390 | 24 | 3 | 1 | 389 | 1 | 388 | 1.9e-207 | 731.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056010 | MS.gene057102 | 0.819352 | 1.21E-52 | -1.69E-46 |
| MS.gene056010 | MS.gene28918 | 0.808571 | 2.90E-50 | -1.69E-46 |
| MS.gene056010 | MS.gene30352 | 0.803968 | 2.71E-49 | -1.69E-46 |
| MS.gene056010 | MS.gene40799 | 0.819215 | 1.31E-52 | -1.69E-46 |
| MS.gene056010 | MS.gene44179 | 0.822465 | 2.34E-53 | -1.69E-46 |
| MS.gene056010 | MS.gene48037 | 0.822913 | 1.84E-53 | -1.69E-46 |
| MS.gene056010 | MS.gene52122 | 0.805949 | 1.04E-49 | -1.69E-46 |
| MS.gene056010 | MS.gene58081 | 0.804848 | 1.77E-49 | -1.69E-46 |
| MS.gene056010 | MS.gene71945 | 0.803402 | 3.55E-49 | -1.69E-46 |
| MS.gene056010 | MS.gene73883 | 0.804105 | 2.53E-49 | -1.69E-46 |
| MS.gene056010 | MS.gene73885 | 0.807203 | 5.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056010.t1 | MTR_1g084010 | 94.545 | 330 | 16 | 2 | 61 | 389 | 1 | 329 | 0.0 | 646 |
| MS.gene056010.t1 | MTR_4g130310 | 43.636 | 220 | 109 | 4 | 42 | 251 | 56 | 270 | 1.37e-47 | 169 |
| MS.gene056010.t1 | MTR_4g130310 | 43.636 | 220 | 109 | 4 | 42 | 251 | 56 | 270 | 1.51e-47 | 169 |
| MS.gene056010.t1 | MTR_4g007710 | 45.263 | 190 | 97 | 1 | 42 | 224 | 65 | 254 | 2.29e-46 | 166 |
| MS.gene056010.t1 | MTR_6g013040 | 50.331 | 151 | 64 | 3 | 85 | 233 | 48 | 189 | 4.29e-37 | 134 |
| MS.gene056010.t1 | MTR_6g013260 | 48.344 | 151 | 67 | 3 | 85 | 233 | 48 | 189 | 1.34e-34 | 127 |
| MS.gene056010.t1 | MTR_4g130340 | 35.321 | 218 | 119 | 6 | 42 | 242 | 20 | 232 | 1.25e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056010.t1 | AT2G24100 | 46.269 | 201 | 103 | 2 | 42 | 237 | 64 | 264 | 2.34e-53 | 184 |
| MS.gene056010.t1 | AT4G30780 | 39.545 | 220 | 108 | 2 | 42 | 236 | 71 | 290 | 1.85e-46 | 167 |
| MS.gene056010.t1 | AT3G05770 | 42.512 | 207 | 103 | 5 | 43 | 234 | 26 | 231 | 2.62e-38 | 142 |
| MS.gene056010.t1 | AT3G05770 | 42.512 | 207 | 103 | 5 | 43 | 234 | 26 | 231 | 4.99e-38 | 141 |
| MS.gene056010.t1 | AT1G54300 | 42.857 | 175 | 90 | 4 | 85 | 250 | 1 | 174 | 8.96e-37 | 136 |
Find 79 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAATACATACCTGTATT+TGG | 0.221422 | 1.3:+59689860 | None:intergenic |
| ATCATCATTGTTGGATAATA+AGG | 0.246670 | 1.3:+59690942 | None:intergenic |
| GGCTAAATATCCTGCGGATT+TGG | 0.299643 | 1.3:-59690289 | MS.gene056010:CDS |
| CCAATGTATATGCTCATAAT+CGG | 0.308250 | 1.3:-59690486 | MS.gene056010:CDS |
| TCAATTGATTGAGCAACATT+TGG | 0.312130 | 1.3:+59689090 | None:intergenic |
| ACAGTATGCTTTCCAGGCTT+TGG | 0.324988 | 1.3:+59689921 | None:intergenic |
| GTCCACACAGTATGCTTTCC+AGG | 0.325735 | 1.3:+59689915 | None:intergenic |
| TTATGACACTTCACTTTCAA+TGG | 0.327535 | 1.3:-59689277 | MS.gene056010:CDS |
| TTTGGAAACCACCTCGGTTA+TGG | 0.337152 | 1.3:-59689528 | MS.gene056010:CDS |
| TGCACAAACTACATATAATA+TGG | 0.344645 | 1.3:-59690920 | MS.gene056010:intron |
| TTGATTCACATTTAGATAAG+AGG | 0.366276 | 1.3:-59689577 | MS.gene056010:CDS |
| CAATTGATTGAGCAACATTT+GGG | 0.379679 | 1.3:+59689091 | None:intergenic |
| TATATATGGCACACATTAAC+GGG | 0.380029 | 1.3:-59690984 | None:intergenic |
| AATTATAACAACCCAACTTC+AGG | 0.388515 | 1.3:-59689464 | MS.gene056010:intron |
| TTGTTATAATTAGAAATTAG+AGG | 0.392544 | 1.3:+59689476 | None:intergenic |
| CAACTTTCTTAATTTCTAGT+TGG | 0.407448 | 1.3:+59690532 | None:intergenic |
| CTATATATGGCACACATTAA+CGG | 0.414587 | 1.3:-59690985 | None:intergenic |
| TAAGAAAGTTGAGAAGTTGA+AGG | 0.416658 | 1.3:-59690520 | MS.gene056010:CDS |
| ACCTGGTATTCTTGAAATTG+AGG | 0.425809 | 1.3:-59690142 | MS.gene056010:intron |
| TGCCAAGTTGTTGAATTTGT+TGG | 0.432609 | 1.3:+59689504 | None:intergenic |
| ACCCGAGGGGTAGCGTATGC+TGG | 0.437558 | 1.3:+59690637 | None:intergenic |
| GTGAACTTGGAAATGGTCTC+TGG | 0.444763 | 1.3:+59689612 | None:intergenic |
| ATACAAGCACACAGTTTGAT+TGG | 0.447333 | 1.3:-59689044 | MS.gene056010:CDS |
| CAATGTATATGCTCATAATC+GGG | 0.450660 | 1.3:-59690485 | MS.gene056010:CDS |
| ATCCGATGATGTCTTCCTCT+TGG | 0.452740 | 1.3:-59689314 | MS.gene056010:CDS |
| AGTTTGTGCATCATCATTGT+TGG | 0.456099 | 1.3:+59690933 | None:intergenic |
| GCAAGAGCTTTGCGTAGTAT+TGG | 0.456400 | 1.3:+59689663 | None:intergenic |
| ATAGCATGTGAACTTGGAAA+TGG | 0.457976 | 1.3:+59689605 | None:intergenic |
| AAATAAATAGCATGTGAACT+TGG | 0.458183 | 1.3:+59689599 | None:intergenic |
| TGGTTCTATCTCACGAAAGA+AGG | 0.461407 | 1.3:+59689941 | None:intergenic |
| ATGGTCAAGCTTCCAAATAC+AGG | 0.475121 | 1.3:-59689872 | MS.gene056010:intron |
| ATGTCTTCCTCTTGGAGTCA+AGG | 0.477708 | 1.3:-59689306 | MS.gene056010:CDS |
| TCATCATTGTTGGATAATAA+GGG | 0.478032 | 1.3:+59690943 | None:intergenic |
| GCAATGTGATAATCGATTGT+TGG | 0.481316 | 1.3:-59689642 | MS.gene056010:CDS |
| CACTATCTTCAATTCCCTCC+AGG | 0.487578 | 1.3:-59689695 | MS.gene056010:CDS |
| CACACATTAACGGGTATGAC+TGG | 0.489472 | 1.3:-59690975 | MS.gene056010:CDS |
| TAGTATTGGTCAAGAGCTCC+TGG | 0.490207 | 1.3:+59689677 | None:intergenic |
| TCTGTGAATGGAAGCATGTC+AGG | 0.501679 | 1.3:+59690597 | None:intergenic |
| TCCCAGCATACGCTACCCCT+CGG | 0.503491 | 1.3:-59690639 | MS.gene056010:CDS |
| CCCGAGGGGTAGCGTATGCT+GGG | 0.507263 | 1.3:+59690638 | None:intergenic |
| TTTAACCAATCTGGTCCACT+TGG | 0.513737 | 1.3:+59689219 | None:intergenic |
| ATCAAACTGTGTGCTTGTAT+TGG | 0.523069 | 1.3:+59689047 | None:intergenic |
| CGTGAGATAGAACCAAAGCC+TGG | 0.526485 | 1.3:-59689933 | MS.gene056010:CDS |
| CCCAGCATACGCTACCCCTC+GGG | 0.538590 | 1.3:-59690638 | MS.gene056010:CDS |
| AACATTTGGGCAAACTACAC+TGG | 0.542754 | 1.3:+59689104 | None:intergenic |
| GTTCTTGAGGATAATTTACC+TGG | 0.542989 | 1.3:-59690159 | MS.gene056010:CDS |
| CACAACCAAGTGGACCAGAT+TGG | 0.548380 | 1.3:-59689224 | MS.gene056010:CDS |
| ACCTCAATTTCAAGAATACC+AGG | 0.549550 | 1.3:+59690141 | None:intergenic |
| GCTTGTATGCAACTTGCATG+TGG | 0.558794 | 1.3:+59689246 | None:intergenic |
| ATGAGTGAAGTCTTGAGATA+AGG | 0.560081 | 1.3:+59689893 | None:intergenic |
| ATCCTCAAGAACAGCTCGAA+TGG | 0.565864 | 1.3:+59690170 | None:intergenic |
| TGGTTAAAATATGAACTGCC+TGG | 0.567031 | 1.3:-59689204 | MS.gene056010:CDS |
| CACATTAATAACATGTTGCT+AGG | 0.570999 | 1.3:-59689180 | MS.gene056010:CDS |
| AACTTAGCTACCAAATCCGC+AGG | 0.571581 | 1.3:+59690279 | None:intergenic |
| GACCAACAAATTCAACAACT+TGG | 0.574314 | 1.3:-59689506 | MS.gene056010:CDS |
| CCGATTATGAGCATATACAT+TGG | 0.575200 | 1.3:+59690486 | None:intergenic |
| ATGCTAAACGAAAATTAGTG+TGG | 0.582385 | 1.3:-59690251 | MS.gene056010:CDS |
| TCTATCTCACGAAAGAAGGA+TGG | 0.585335 | 1.3:+59689945 | None:intergenic |
| TGCTAAACGAAAATTAGTGT+GGG | 0.586021 | 1.3:-59690250 | MS.gene056010:CDS |
| ATGAAAGCCTTGACTCCAAG+AGG | 0.593005 | 1.3:+59689299 | None:intergenic |
| AGCCATTCGAGCTGTTCTTG+AGG | 0.594740 | 1.3:-59690172 | MS.gene056010:CDS |
| ATTAATAACATGTTGCTAGG+AGG | 0.596689 | 1.3:-59689177 | MS.gene056010:CDS |
| CAATGTGAGCTTTAACCCGA+GGG | 0.604117 | 1.3:+59690623 | None:intergenic |
| TTATCTCAAGACTTCACTCA+TGG | 0.608814 | 1.3:-59689891 | MS.gene056010:CDS |
| TCATGATTTGGAAACCACCT+CGG | 0.619327 | 1.3:-59689534 | MS.gene056010:CDS |
| CTCCAAGAGGAAGACATCAT+CGG | 0.624470 | 1.3:+59689312 | None:intergenic |
| ATTGGTCAAGAGCTCCTGGA+GGG | 0.626902 | 1.3:+59689681 | None:intergenic |
| TCAATGTGAGCTTTAACCCG+AGG | 0.635603 | 1.3:+59690622 | None:intergenic |
| TGCATACAAGCACAACCAAG+TGG | 0.636072 | 1.3:-59689234 | MS.gene056010:CDS |
| CTTGTATGCAACTTGCATGT+GGG | 0.636807 | 1.3:+59689247 | None:intergenic |
| AGGAAAAGATTGAAATACAG+TGG | 0.636825 | 1.3:-59690206 | MS.gene056010:CDS |
| AACATGTTATTAATGTGACC+AGG | 0.650975 | 1.3:+59689186 | None:intergenic |
| TTGTTGGTCCATAACCGAGG+TGG | 0.653005 | 1.3:+59689520 | None:intergenic |
| AATTTGTTGGTCCATAACCG+AGG | 0.660496 | 1.3:+59689517 | None:intergenic |
| ACTGTGTGCTTGTATTGGTG+TGG | 0.682297 | 1.3:+59689052 | None:intergenic |
| GATTGAGGCTAAATATCCTG+CGG | 0.698085 | 1.3:-59690295 | MS.gene056010:CDS |
| TATTGGTCAAGAGCTCCTGG+AGG | 0.715866 | 1.3:+59689680 | None:intergenic |
| AGCCTGGAAAGCATACTGTG+TGG | 0.716579 | 1.3:-59689917 | MS.gene056010:CDS |
| AATGTGAGCTTTAACCCGAG+GGG | 0.753488 | 1.3:+59690624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATCTAAGTAACAT+AGG | + | chr1.3:59689142-59689161 | None:intergenic | 15.0% |
| !! | AAAGAATAACAACATTAATT+TGG | - | chr1.3:59689296-59689315 | MS.gene056010:CDS | 15.0% |
| !! | AATAAAACCTTGAATATTAT+GGG | + | chr1.3:59689648-59689667 | None:intergenic | 15.0% |
| !! | TAATAAAACCTTGAATATTA+TGG | + | chr1.3:59689649-59689668 | None:intergenic | 15.0% |
| !! | TTGTTATAATTAGAAATTAG+AGG | + | chr1.3:59690535-59690554 | None:intergenic | 15.0% |
| !! | TTATGGAATACTATAATCAA+TGG | + | chr1.3:59690582-59690601 | None:intergenic | 20.0% |
| !!! | ACTTAATTTTTCTCATGATT+TGG | - | chr1.3:59690462-59690481 | MS.gene056010:intron | 20.0% |
| !!! | GTATAGATGTTAATTTTCAT+TGG | - | chr1.3:59689997-59690016 | MS.gene056010:intron | 20.0% |
| !!! | TAGTTTTATAGTACAATTGA+TGG | - | chr1.3:59690265-59690284 | MS.gene056010:CDS | 20.0% |
| ! | AAATAAATAGCATGTGAACT+TGG | + | chr1.3:59690412-59690431 | None:intergenic | 25.0% |
| ! | AAGAAATACATACCTGTATT+TGG | + | chr1.3:59690151-59690170 | None:intergenic | 25.0% |
| ! | AATAAGTCCCATAATATTCA+AGG | - | chr1.3:59689638-59689657 | MS.gene056010:CDS | 25.0% |
| ! | ACTAATAATTACGTGCATTA+AGG | - | chr1.3:59689198-59689217 | MS.gene056010:CDS | 25.0% |
| ! | ATCATCATTGTTGGATAATA+AGG | + | chr1.3:59689069-59689088 | None:intergenic | 25.0% |
| ! | TCATCATTGTTGGATAATAA+GGG | + | chr1.3:59689068-59689087 | None:intergenic | 25.0% |
| ! | TGAATATTATGGGACTTATT+AGG | + | chr1.3:59689638-59689657 | None:intergenic | 25.0% |
| ! | TGCACAAACTACATATAATA+TGG | - | chr1.3:59689088-59689107 | MS.gene056010:CDS | 25.0% |
| ! | TTCATCCAAAAGTAAAAAGA+AGG | + | chr1.3:59690192-59690211 | None:intergenic | 25.0% |
| ! | TTGATTCACATTTAGATAAG+AGG | - | chr1.3:59690431-59690450 | MS.gene056010:intron | 25.0% |
| !! | ATTTTATCTCTTCTAATGTC+AGG | - | chr1.3:59689320-59689339 | MS.gene056010:CDS | 25.0% |
| !! | TTACACCTTCTTTTTACTTT+TGG | - | chr1.3:59690184-59690203 | MS.gene056010:CDS | 25.0% |
| !! | TTGTGTTGAATTCATTTTCT+GGG | + | chr1.3:59690866-59690885 | None:intergenic | 25.0% |
| !!! | AGTTCATATTTTAACCAATC+TGG | + | chr1.3:59690801-59690820 | None:intergenic | 25.0% |
| !!! | CAACTTTCTTAATTTCTAGT+TGG | + | chr1.3:59689479-59689498 | None:intergenic | 25.0% |
| AACATGTTATTAATGTGACC+AGG | + | chr1.3:59690825-59690844 | None:intergenic | 30.0% | |
| AATATTTCTTTCTACTCAGG+AGG | - | chr1.3:59690290-59690309 | MS.gene056010:CDS | 30.0% | |
| AATTATAACAACCCAACTTC+AGG | - | chr1.3:59690544-59690563 | MS.gene056010:CDS | 30.0% | |
| AGGAAAAGATTGAAATACAG+TGG | - | chr1.3:59689802-59689821 | MS.gene056010:intron | 30.0% | |
| ATGCTAAACGAAAATTAGTG+TGG | - | chr1.3:59689757-59689776 | MS.gene056010:intron | 30.0% | |
| ATTAATAACATGTTGCTAGG+AGG | - | chr1.3:59690831-59690850 | MS.gene056010:intron | 30.0% | |
| CAATGTATATGCTCATAATC+GGG | - | chr1.3:59689523-59689542 | MS.gene056010:CDS | 30.0% | |
| CAATTGATTGAGCAACATTT+GGG | + | chr1.3:59690920-59690939 | None:intergenic | 30.0% | |
| CACATTAATAACATGTTGCT+AGG | - | chr1.3:59690828-59690847 | MS.gene056010:intron | 30.0% | |
| CCAATGTATATGCTCATAAT+CGG | - | chr1.3:59689522-59689541 | MS.gene056010:CDS | 30.0% | |
| GCAAATATTTCTTTCTACTC+AGG | - | chr1.3:59690287-59690306 | MS.gene056010:CDS | 30.0% | |
| TAAGAAAGTTGAGAAGTTGA+AGG | - | chr1.3:59689488-59689507 | MS.gene056010:CDS | 30.0% | |
| TCAATTGATTGAGCAACATT+TGG | + | chr1.3:59690921-59690940 | None:intergenic | 30.0% | |
| TGAGCACACATGTATTATTA+TGG | + | chr1.3:59690599-59690618 | None:intergenic | 30.0% | |
| TGCTAAACGAAAATTAGTGT+GGG | - | chr1.3:59689758-59689777 | MS.gene056010:intron | 30.0% | |
| TTATGACACTTCACTTTCAA+TGG | - | chr1.3:59690731-59690750 | MS.gene056010:intron | 30.0% | |
| ! | AAAAAGAAGGTGTAATAACG+TGG | + | chr1.3:59690179-59690198 | None:intergenic | 30.0% |
| ! | AAATTTTTGCTACCTGAAGT+TGG | + | chr1.3:59690559-59690578 | None:intergenic | 30.0% |
| ! | AATTTTTGCTACCTGAAGTT+GGG | + | chr1.3:59690558-59690577 | None:intergenic | 30.0% |
| ! | ACGTATGCATGTTTTGTATA+TGG | - | chr1.3:59689247-59689266 | MS.gene056010:CDS | 30.0% |
| ! | GTTGTGTTGAATTCATTTTC+TGG | + | chr1.3:59690867-59690886 | None:intergenic | 30.0% |
| ! | TATGCATGTTTTGTATATGG+AGG | - | chr1.3:59689250-59689269 | MS.gene056010:CDS | 30.0% |
| !! | TTCATGTTTTGTTCTGTGAA+TGG | + | chr1.3:59689426-59689445 | None:intergenic | 30.0% |
| !!! | GGTACTTCTTTTTTTAATGC+AGG | - | chr1.3:59689887-59689906 | MS.gene056010:CDS | 30.0% |
| !!! | TGAATTCATTTTCTGGGATA+TGG | + | chr1.3:59690860-59690879 | None:intergenic | 30.0% |
| AACTTGCACGCAAATAGATA+TGG | - | chr1.3:59690212-59690231 | MS.gene056010:CDS | 35.0% | |
| ACCTCAATTTCAAGAATACC+AGG | + | chr1.3:59689870-59689889 | None:intergenic | 35.0% | |
| ACCTGGTATTCTTGAAATTG+AGG | - | chr1.3:59689866-59689885 | MS.gene056010:intron | 35.0% | |
| AGTTTGTGCATCATCATTGT+TGG | + | chr1.3:59689078-59689097 | None:intergenic | 35.0% | |
| ATACAAGCACACAGTTTGAT+TGG | - | chr1.3:59690964-59690983 | MS.gene056010:CDS | 35.0% | |
| ATAGCATGTGAACTTGGAAA+TGG | + | chr1.3:59690406-59690425 | None:intergenic | 35.0% | |
| ATCAAACTGTGTGCTTGTAT+TGG | + | chr1.3:59690964-59690983 | None:intergenic | 35.0% | |
| ATGAGTGAAGTCTTGAGATA+AGG | + | chr1.3:59690118-59690137 | None:intergenic | 35.0% | |
| CCGATTATGAGCATATACAT+TGG | + | chr1.3:59689525-59689544 | None:intergenic | 35.0% | |
| GACCAACAAATTCAACAACT+TGG | - | chr1.3:59690502-59690521 | MS.gene056010:CDS | 35.0% | |
| GCAATGTGATAATCGATTGT+TGG | - | chr1.3:59690366-59690385 | MS.gene056010:intron | 35.0% | |
| GTTCTTGAGGATAATTTACC+TGG | - | chr1.3:59689849-59689868 | MS.gene056010:intron | 35.0% | |
| TACACTGTGATAAGCTATAC+AGG | - | chr1.3:59689925-59689944 | MS.gene056010:CDS | 35.0% | |
| TGCCAAGTTGTTGAATTTGT+TGG | + | chr1.3:59690507-59690526 | None:intergenic | 35.0% | |
| TGGTTAAAATATGAACTGCC+TGG | - | chr1.3:59690804-59690823 | MS.gene056010:intron | 35.0% | |
| TTATCTCAAGACTTCACTCA+TGG | - | chr1.3:59690117-59690136 | MS.gene056010:intron | 35.0% | |
| ! | GATTTTGCGTGATGGTTTAA+AGG | - | chr1.3:59689782-59689801 | MS.gene056010:intron | 35.0% |
| !!! | GCTCATAATCGGGTTTTTTA+AGG | - | chr1.3:59689533-59689552 | MS.gene056010:CDS | 35.0% |
| AACATTTGGGCAAACTACAC+TGG | + | chr1.3:59690907-59690926 | None:intergenic | 40.0% | |
| ATGGTCAAGCTTCCAAATAC+AGG | - | chr1.3:59690136-59690155 | MS.gene056010:intron | 40.0% | |
| CTTGTATGCAACTTGCATGT+GGG | + | chr1.3:59690764-59690783 | None:intergenic | 40.0% | |
| GATTGAGGCTAAATATCCTG+CGG | - | chr1.3:59689713-59689732 | MS.gene056010:intron | 40.0% | |
| TCTATCTCACGAAAGAAGGA+TGG | + | chr1.3:59690066-59690085 | None:intergenic | 40.0% | |
| TTTAACCAATCTGGTCCACT+TGG | + | chr1.3:59690792-59690811 | None:intergenic | 40.0% | |
| ! | TCATGATTTGGAAACCACCT+CGG | - | chr1.3:59690474-59690493 | MS.gene056010:intron | 40.0% |
| ! | TGGTTCTATCTCACGAAAGA+AGG | + | chr1.3:59690070-59690089 | None:intergenic | 40.0% |
| !! | AATTTGTTGGTCCATAACCG+AGG | + | chr1.3:59690494-59690513 | None:intergenic | 40.0% |
| AACTTAGCTACCAAATCCGC+AGG | + | chr1.3:59689732-59689751 | None:intergenic | 45.0% | |
| ACAGTATGCTTTCCAGGCTT+TGG | + | chr1.3:59690090-59690109 | None:intergenic | 45.0% | |
| ATCCGATGATGTCTTCCTCT+TGG | - | chr1.3:59690694-59690713 | MS.gene056010:intron | 45.0% | |
| ATCCTCAAGAACAGCTCGAA+TGG | + | chr1.3:59689841-59689860 | None:intergenic | 45.0% | |
| ATGAAAGCCTTGACTCCAAG+AGG | + | chr1.3:59690712-59690731 | None:intergenic | 45.0% | |
| ATGTCTTCCTCTTGGAGTCA+AGG | - | chr1.3:59690702-59690721 | MS.gene056010:intron | 45.0% | |
| CACTATCTTCAATTCCCTCC+AGG | - | chr1.3:59690313-59690332 | MS.gene056010:intron | 45.0% | |
| CTCCAAGAGGAAGACATCAT+CGG | + | chr1.3:59690699-59690718 | None:intergenic | 45.0% | |
| GCAAGAGCTTTGCGTAGTAT+TGG | + | chr1.3:59690348-59690367 | None:intergenic | 45.0% | |
| GCTTGTATGCAACTTGCATG+TGG | + | chr1.3:59690765-59690784 | None:intergenic | 45.0% | |
| GGCTAAATATCCTGCGGATT+TGG | - | chr1.3:59689719-59689738 | MS.gene056010:intron | 45.0% | |
| GTGAACTTGGAAATGGTCTC+TGG | + | chr1.3:59690399-59690418 | None:intergenic | 45.0% | |
| TATGCTGTGCATGCAGATTG+AGG | - | chr1.3:59689698-59689717 | MS.gene056010:CDS | 45.0% | |
| TGCATACAAGCACAACCAAG+TGG | - | chr1.3:59690774-59690793 | MS.gene056010:intron | 45.0% | |
| TGCATACGTGTGTGTGTAGT+AGG | + | chr1.3:59689236-59689255 | None:intergenic | 45.0% | |
| TTTGGAAACCACCTCGGTTA+TGG | - | chr1.3:59690480-59690499 | MS.gene056010:CDS | 45.0% | |
| ! | AATGTGAGCTTTAACCCGAG+GGG | + | chr1.3:59689387-59689406 | None:intergenic | 45.0% |
| ! | ACTGTGTGCTTGTATTGGTG+TGG | + | chr1.3:59690959-59690978 | None:intergenic | 45.0% |
| ! | CAATGTGAGCTTTAACCCGA+GGG | + | chr1.3:59689388-59689407 | None:intergenic | 45.0% |
| ! | CACACATTAACGGGTATGAC+TGG | - | chr1.3:59689033-59689052 | MS.gene056010:CDS | 45.0% |
| ! | TCAATGTGAGCTTTAACCCG+AGG | + | chr1.3:59689389-59689408 | None:intergenic | 45.0% |
| ! | TCTGTGAATGGAAGCATGTC+AGG | + | chr1.3:59689414-59689433 | None:intergenic | 45.0% |
| !! | TAGTATTGGTCAAGAGCTCC+TGG | + | chr1.3:59690334-59690353 | None:intergenic | 45.0% |
| AGCCATTCGAGCTGTTCTTG+AGG | - | chr1.3:59689836-59689855 | MS.gene056010:intron | 50.0% | |
| ATTGGTCAAGAGCTCCTGGA+GGG | + | chr1.3:59690330-59690349 | None:intergenic | 50.0% | |
| CACAACCAAGTGGACCAGAT+TGG | - | chr1.3:59690784-59690803 | MS.gene056010:intron | 50.0% | |
| CGTGAGATAGAACCAAAGCC+TGG | - | chr1.3:59690075-59690094 | MS.gene056010:intron | 50.0% | |
| GTCCACACAGTATGCTTTCC+AGG | + | chr1.3:59690096-59690115 | None:intergenic | 50.0% | |
| TATTGGTCAAGAGCTCCTGG+AGG | + | chr1.3:59690331-59690350 | None:intergenic | 50.0% | |
| TTGTTGGTCCATAACCGAGG+TGG | + | chr1.3:59690491-59690510 | None:intergenic | 50.0% | |
| ! | AGCCTGGAAAGCATACTGTG+TGG | - | chr1.3:59690091-59690110 | MS.gene056010:intron | 50.0% |
| ! | GTGTGGGAGATTTTGCGTGA+TGG | - | chr1.3:59689774-59689793 | MS.gene056010:intron | 50.0% |
| TCCCAGCATACGCTACCCCT+CGG | - | chr1.3:59689369-59689388 | MS.gene056010:intron | 60.0% | |
| ACCCGAGGGGTAGCGTATGC+TGG | + | chr1.3:59689374-59689393 | None:intergenic | 65.0% | |
| CCCAGCATACGCTACCCCTC+GGG | - | chr1.3:59689370-59689389 | MS.gene056010:intron | 65.0% | |
| CCCGAGGGGTAGCGTATGCT+GGG | + | chr1.3:59689373-59689392 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59689029 | 59691001 | 59689029 | ID=MS.gene056010 |
| chr1.3 | mRNA | 59689029 | 59691001 | 59689029 | ID=MS.gene056010.t1;Parent=MS.gene056010 |
| chr1.3 | exon | 59690921 | 59691001 | 59690921 | ID=MS.gene056010.t1.exon1;Parent=MS.gene056010.t1 |
| chr1.3 | CDS | 59690921 | 59691001 | 59690921 | ID=cds.MS.gene056010.t1;Parent=MS.gene056010.t1 |
| chr1.3 | exon | 59690476 | 59690688 | 59690476 | ID=MS.gene056010.t1.exon2;Parent=MS.gene056010.t1 |
| chr1.3 | CDS | 59690476 | 59690688 | 59690476 | ID=cds.MS.gene056010.t1;Parent=MS.gene056010.t1 |
| chr1.3 | exon | 59690143 | 59690316 | 59690143 | ID=MS.gene056010.t1.exon3;Parent=MS.gene056010.t1 |
| chr1.3 | CDS | 59690143 | 59690316 | 59690143 | ID=cds.MS.gene056010.t1;Parent=MS.gene056010.t1 |
| chr1.3 | exon | 59689873 | 59689979 | 59689873 | ID=MS.gene056010.t1.exon4;Parent=MS.gene056010.t1 |
| chr1.3 | CDS | 59689873 | 59689979 | 59689873 | ID=cds.MS.gene056010.t1;Parent=MS.gene056010.t1 |
| chr1.3 | exon | 59689465 | 59689721 | 59689465 | ID=MS.gene056010.t1.exon5;Parent=MS.gene056010.t1 |
| chr1.3 | CDS | 59689465 | 59689721 | 59689465 | ID=cds.MS.gene056010.t1;Parent=MS.gene056010.t1 |
| chr1.3 | exon | 59689029 | 59689366 | 59689029 | ID=MS.gene056010.t1.exon6;Parent=MS.gene056010.t1 |
| chr1.3 | CDS | 59689029 | 59689366 | 59689029 | ID=cds.MS.gene056010.t1;Parent=MS.gene056010.t1 |
| Gene Sequence |
| Protein sequence |
