Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52122.t1 | XP_003607208.1 | 99.6 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 4.60E-142 | 513.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52122.t1 | B7FNA9 | 99.6 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 1.1e-144 | 513.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52122.t1 | G7JNG4 | 99.6 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 3.3e-142 | 513.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene52122 | 0.802851 | 4.61E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene52122 | 0.860453 | 2.04E-63 | -1.69E-46 |
| MS.gene04919 | MS.gene52122 | 0.838276 | 3.17E-57 | -1.69E-46 |
| MS.gene04920 | MS.gene52122 | 0.850901 | 1.26E-60 | -1.69E-46 |
| MS.gene049283 | MS.gene52122 | 0.830341 | 3.10E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene52122 | 0.818774 | 1.64E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene52122 | 0.841163 | 5.61E-58 | -1.69E-46 |
| MS.gene049680 | MS.gene52122 | 0.823907 | 1.08E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene52122 | 0.831448 | 1.66E-55 | -1.69E-46 |
| MS.gene050945 | MS.gene52122 | 0.841196 | 5.50E-58 | -1.69E-46 |
| MS.gene051003 | MS.gene52122 | 0.867409 | 1.40E-65 | -1.69E-46 |
| MS.gene051019 | MS.gene52122 | 0.819399 | 1.19E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene52122 | 0.850918 | 1.24E-60 | -1.69E-46 |
| MS.gene051343 | MS.gene52122 | 0.821045 | 4.97E-53 | -1.69E-46 |
| MS.gene051597 | MS.gene52122 | 0.804069 | 2.58E-49 | -1.69E-46 |
| MS.gene051637 | MS.gene52122 | 0.805604 | 1.23E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene52122 | 0.838818 | 2.29E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene52122 | 0.819985 | 8.71E-53 | -1.69E-46 |
| MS.gene052072 | MS.gene52122 | 0.846176 | 2.56E-59 | -1.69E-46 |
| MS.gene052307 | MS.gene52122 | 0.814297 | 1.66E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene52122 | 0.857194 | 1.93E-62 | -1.69E-46 |
| MS.gene052793 | MS.gene52122 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene52122 | 0.818041 | 2.41E-52 | -1.69E-46 |
| MS.gene053272 | MS.gene52122 | -0.812277 | 4.60E-51 | -1.69E-46 |
| MS.gene053456 | MS.gene52122 | 0.809268 | 2.06E-50 | -1.69E-46 |
| MS.gene053879 | MS.gene52122 | 0.823056 | 1.70E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene52122 | 0.85845 | 8.17E-63 | -1.69E-46 |
| MS.gene054005 | MS.gene52122 | 0.811846 | 5.71E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene52122 | 0.804283 | 2.33E-49 | -1.69E-46 |
| MS.gene054413 | MS.gene52122 | 0.80192 | 7.17E-49 | -1.69E-46 |
| MS.gene054957 | MS.gene52122 | 0.804554 | 2.04E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene52122 | 0.826421 | 2.74E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene52122 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene055801 | MS.gene52122 | 0.802872 | 4.57E-49 | -1.69E-46 |
| MS.gene056010 | MS.gene52122 | 0.805949 | 1.04E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene52122 | 0.863665 | 2.12E-64 | -1.69E-46 |
| MS.gene056825 | MS.gene52122 | 0.81244 | 4.23E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene52122 | 0.831015 | 2.12E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene52122 | 0.880407 | 5.63E-70 | -1.69E-46 |
| MS.gene057155 | MS.gene52122 | 0.817119 | 3.89E-52 | -1.69E-46 |
| MS.gene057662 | MS.gene52122 | 0.801789 | 7.63E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene52122 | 0.810873 | 9.28E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene52122 | 0.821774 | 3.38E-53 | -1.69E-46 |
| MS.gene058095 | MS.gene52122 | 0.805522 | 1.28E-49 | -1.69E-46 |
| MS.gene058149 | MS.gene52122 | 0.802665 | 5.04E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene52122 | 0.848261 | 6.86E-60 | -1.69E-46 |
| MS.gene058592 | MS.gene52122 | 0.817735 | 2.83E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene52122 | 0.825512 | 4.50E-54 | -1.69E-46 |
| MS.gene058783 | MS.gene52122 | 0.807835 | 4.16E-50 | -1.69E-46 |
| MS.gene05878 | MS.gene52122 | 0.816379 | 5.70E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene52122 | 0.871675 | 5.70E-67 | -1.69E-46 |
| MS.gene05952 | MS.gene52122 | 0.837837 | 4.11E-57 | -1.69E-46 |
| MS.gene059802 | MS.gene52122 | 0.822653 | 2.11E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene52122 | -0.859186 | 4.92E-63 | -1.69E-46 |
| MS.gene059901 | MS.gene52122 | -0.8382 | 3.31E-57 | -1.69E-46 |
| MS.gene060512 | MS.gene52122 | 0.81183 | 5.75E-51 | -1.69E-46 |
| MS.gene060527 | MS.gene52122 | 0.827009 | 1.98E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene52122 | 0.829105 | 6.20E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene52122 | 0.835465 | 1.65E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene52122 | 0.871014 | 9.43E-67 | -1.69E-46 |
| MS.gene060937 | MS.gene52122 | 0.883915 | 3.00E-71 | -1.69E-46 |
| MS.gene061100 | MS.gene52122 | 0.835292 | 1.83E-56 | -1.69E-46 |
| MS.gene061135 | MS.gene52122 | 0.80325 | 3.81E-49 | -1.69E-46 |
| MS.gene061160 | MS.gene52122 | 0.832024 | 1.20E-55 | -1.69E-46 |
| MS.gene061243 | MS.gene52122 | 0.842861 | 2.00E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52122.t1 | MTR_4g074480 | 99.623 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 0.0 | 526 |
| MS.gene52122.t1 | MTR_4g074480 | 99.621 | 264 | 1 | 0 | 2 | 265 | 17 | 280 | 0.0 | 525 |
| MS.gene52122.t1 | MTR_4g108000 | 97.656 | 256 | 6 | 0 | 1 | 256 | 1 | 256 | 0.0 | 498 |
| MS.gene52122.t1 | MTR_4g108000 | 97.647 | 255 | 6 | 0 | 2 | 256 | 32 | 286 | 1.93e-180 | 498 |
| MS.gene52122.t1 | MTR_4g108000 | 97.647 | 255 | 6 | 0 | 2 | 256 | 17 | 271 | 3.31e-180 | 497 |
| MS.gene52122.t1 | MTR_4g108000 | 95.385 | 260 | 12 | 0 | 1 | 260 | 1 | 260 | 2.36e-179 | 499 |
| MS.gene52122.t1 | MTR_4g108000 | 97.244 | 254 | 7 | 0 | 2 | 255 | 17 | 270 | 4.60e-179 | 499 |
| MS.gene52122.t1 | MTR_4g108000 | 97.244 | 254 | 7 | 0 | 2 | 255 | 17 | 270 | 1.76e-178 | 497 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52122.t1 | AT5G18400 | 56.318 | 277 | 104 | 4 | 1 | 265 | 1 | 272 | 1.85e-89 | 266 |
| MS.gene52122.t1 | AT5G18400 | 56.318 | 277 | 104 | 4 | 1 | 265 | 1 | 272 | 1.85e-89 | 266 |
| MS.gene52122.t1 | AT5G18400 | 57.249 | 269 | 98 | 4 | 9 | 265 | 6 | 269 | 1.44e-88 | 264 |
Find 57 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGAAAACAAGTTATTAT+TGG | 0.250596 | 4.1:-29499908 | MS.gene52122:CDS |
| TTTGGTCTACAGTGTGGGTT+AGG | 0.251749 | 4.1:-29497662 | MS.gene52122:intron |
| GGGACTGCCTGCCTTCAAAA+TGG | 0.255879 | 4.1:-29497606 | MS.gene52122:CDS |
| TCCCAATCTGCTGTGGGTTC+AGG | 0.274662 | 4.1:-29500027 | MS.gene52122:CDS |
| TCAAAATCAATTTGCACTTT+GGG | 0.275109 | 4.1:+29499310 | None:intergenic |
| GGAATCTTCCTCTGTGGATT+TGG | 0.313238 | 4.1:-29500151 | MS.gene52122:CDS |
| TCTTTACCAGATGGCAGTTC+AGG | 0.330853 | 4.1:+29499235 | None:intergenic |
| GAGGAGAAAGTGTTGAAGTT+AGG | 0.335111 | 4.1:-29499071 | MS.gene52122:CDS |
| ATCAAAATCAATTTGCACTT+TGG | 0.336118 | 4.1:+29499309 | None:intergenic |
| ACCTGAACCCACAGCAGATT+GGG | 0.367811 | 4.1:+29500026 | None:intergenic |
| GTGGGTTAGGGGATGCGTTT+AGG | 0.373430 | 4.1:-29497649 | MS.gene52122:CDS |
| TTGGTCTACAGTGTGGGTTA+GGG | 0.418067 | 4.1:-29497661 | MS.gene52122:intron |
| GCAACAGGGGATTGTGAAAT+CGG | 0.423300 | 4.1:-29499143 | MS.gene52122:intron |
| AAGGCAGGCAGTCCCTTGTA+AGG | 0.430422 | 4.1:+29497614 | None:intergenic |
| GAAAACAAGTTATTATTGGC+AGG | 0.432138 | 4.1:-29499904 | MS.gene52122:CDS |
| TGCTGTGGGTTCAGGTGATA+AGG | 0.434752 | 4.1:-29500019 | MS.gene52122:intron |
| GTCTGCAGCAAGGAAGTTAC+CGG | 0.440596 | 4.1:+29497475 | None:intergenic |
| GTGCAGTACCTGCCCTTACA+AGG | 0.441245 | 4.1:-29497627 | MS.gene52122:CDS |
| GGTTGAGAAATTGGATCCTC+TGG | 0.453715 | 4.1:-29501046 | MS.gene52122:CDS |
| CACCTGAACCCACAGCAGAT+TGG | 0.467479 | 4.1:+29500025 | None:intergenic |
| TTTGATGCGATTAGAGAGCT+TGG | 0.471851 | 4.1:-29501078 | MS.gene52122:CDS |
| GGACTGCCTGCCTTCAAAAT+GGG | 0.476612 | 4.1:-29497605 | MS.gene52122:CDS |
| AAGAAACCTGAACTGCCATC+TGG | 0.477418 | 4.1:-29499241 | MS.gene52122:intron |
| CGAATAAGAGTTGTCCCACC+AGG | 0.491082 | 4.1:+29500057 | None:intergenic |
| TGGTCTACAGTGTGGGTTAG+GGG | 0.497622 | 4.1:-29497660 | MS.gene52122:intron |
| CAAATCCTCCCAATCTGCTG+TGG | 0.503823 | 4.1:-29500034 | MS.gene52122:CDS |
| GCATCAAACACTTGACTGAC+AGG | 0.506089 | 4.1:+29501093 | None:intergenic |
| TTGATGCGATTAGAGAGCTT+GGG | 0.506545 | 4.1:-29501077 | MS.gene52122:CDS |
| TGGTGCTGTGTTGGCATGTA+CGG | 0.526353 | 4.1:-29501130 | MS.gene52122:CDS |
| TCTTGAGTCAGTTGGTCGAT+AGG | 0.526999 | 4.1:+29500099 | None:intergenic |
| ATTAGAGAGCTTGGGAATGA+GGG | 0.528876 | 4.1:-29501069 | MS.gene52122:CDS |
| GATTAGAGAGCTTGGGAATG+AGG | 0.531987 | 4.1:-29501070 | MS.gene52122:CDS |
| ATGTGGAAGGGCAGAAGAAG+AGG | 0.536094 | 4.1:-29499090 | MS.gene52122:CDS |
| TGAGGACTTCTTGAGTCAGT+TGG | 0.543701 | 4.1:+29500091 | None:intergenic |
| CAGGATGCTGCAAAGATGTA+TGG | 0.549895 | 4.1:-29501150 | MS.gene52122:CDS |
| AGGCAGTCCCTTGTAAGGGC+AGG | 0.558512 | 4.1:+29497619 | None:intergenic |
| TCCAGTGGAATCTTCCTCTG+TGG | 0.563111 | 4.1:-29500157 | MS.gene52122:CDS |
| TCCACAGAGGAAGATTCCAC+TGG | 0.564490 | 4.1:+29500156 | None:intergenic |
| TGCCTTCAAAATGGGCGAGA+AGG | 0.566839 | 4.1:-29497597 | MS.gene52122:intron |
| AAATCCTCCCAATCTGCTGT+GGG | 0.570159 | 4.1:-29500033 | MS.gene52122:CDS |
| ACACTGCCACAAGCTGATTG+AGG | 0.579233 | 4.1:+29499023 | None:intergenic |
| TGAAATCGGACCTACAAGAA+AGG | 0.582586 | 4.1:-29499129 | MS.gene52122:CDS |
| AACTTCAGGCAAGTTTCCAG+TGG | 0.602354 | 4.1:-29500172 | MS.gene52122:intron |
| GTCCTCAGAGTGTTAAAACC+TGG | 0.604470 | 4.1:-29500075 | MS.gene52122:CDS |
| AATAATCCTCAATCAGCTTG+TGG | 0.606583 | 4.1:-29499029 | MS.gene52122:CDS |
| AAAGATGTATGGTGCTGTGT+TGG | 0.610093 | 4.1:-29501139 | MS.gene52122:CDS |
| TGAACCCACAGCAGATTGGG+AGG | 0.622299 | 4.1:+29500029 | None:intergenic |
| CTCAGAGTGTTAAAACCTGG+TGG | 0.624416 | 4.1:-29500072 | MS.gene52122:CDS |
| TGCAGTACCTGCCCTTACAA+GGG | 0.630912 | 4.1:-29497626 | MS.gene52122:CDS |
| TTAGAGAGCTTGGGAATGAG+GGG | 0.642564 | 4.1:-29501068 | MS.gene52122:CDS |
| AGGCAGGCAGTCCCTTGTAA+GGG | 0.644070 | 4.1:+29497615 | None:intergenic |
| TCTATCATATGTCTGCAGCA+AGG | 0.648889 | 4.1:+29497465 | None:intergenic |
| TAGAGAGCTTGGGAATGAGG+GGG | 0.658577 | 4.1:-29501067 | MS.gene52122:CDS |
| ACAGGCGTTACAATCTTCTG+TGG | 0.663312 | 4.1:-29499869 | MS.gene52122:intron |
| TCAGAGTGTTAAAACCTGGT+GGG | 0.664069 | 4.1:-29500071 | MS.gene52122:CDS |
| GATGCAGATGTAATAACCAG+AGG | 0.692682 | 4.1:+29501030 | None:intergenic |
| TAAAACAACCAAATCCACAG+AGG | 0.772386 | 4.1:+29500143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTTAAGAAAAAACAA+CGG | + | chr4.1:29499400-29499419 | None:intergenic | 10.0% |
| !!! | TCAAATTATTTTTTCTATAA+TGG | - | chr4.1:29501493-29501512 | MS.gene52122:intron | 10.0% |
| !! | AAAATAACATTATAACATCA+AGG | + | chr4.1:29500533-29500552 | None:intergenic | 15.0% |
| !!! | ATAATTTGAAATAGCATTAA+CGG | + | chr4.1:29501482-29501501 | None:intergenic | 15.0% |
| !!! | TAAAACAAAGTTGATTTATT+TGG | - | chr4.1:29498936-29498955 | MS.gene52122:intron | 15.0% |
| !!! | TTACATGATTAATACTTTTA+AGG | + | chr4.1:29500330-29500349 | None:intergenic | 15.0% |
| !!! | TTGATGTTATAATGTTATTT+TGG | - | chr4.1:29500532-29500551 | MS.gene52122:intron | 15.0% |
| !!! | TTGCATTAAATTTGTTTTAT+GGG | - | chr4.1:29498259-29498278 | MS.gene52122:intron | 15.0% |
| !!! | TTTGCATTAAATTTGTTTTA+TGG | - | chr4.1:29498258-29498277 | MS.gene52122:intron | 15.0% |
| !! | AAAAAATAGTCGGTAAAAAT+TGG | + | chr4.1:29499004-29499023 | None:intergenic | 20.0% |
| !! | AAAATAGACGAAACTATTAA+CGG | + | chr4.1:29501447-29501466 | None:intergenic | 20.0% |
| !! | AAATCTTAAATATGTTACCA+TGG | - | chr4.1:29500470-29500489 | MS.gene52122:intron | 20.0% |
| !! | ACCTGCAAAAAAAAAAAATA+TGG | + | chr4.1:29501696-29501715 | None:intergenic | 20.0% |
| !! | ATAATATGCACAATAATTGA+AGG | + | chr4.1:29498217-29498236 | None:intergenic | 20.0% |
| !! | GTTAATAAGGAAAAAAAATC+TGG | + | chr4.1:29499747-29499766 | None:intergenic | 20.0% |
| !! | TATAATTAGAACTTGTAAGA+TGG | + | chr4.1:29499780-29499799 | None:intergenic | 20.0% |
| !! | TATTATGTGATGTGATATAA+TGG | - | chr4.1:29498234-29498253 | MS.gene52122:intron | 20.0% |
| !! | TCTTGAAAACAAGTTATTAT+TGG | - | chr4.1:29499291-29499310 | MS.gene52122:CDS | 20.0% |
| !!! | ATATACTTTTGATTTACATG+TGG | - | chr4.1:29501215-29501234 | MS.gene52122:intron | 20.0% |
| !!! | ATGGTAACATATTTAAGATT+TGG | + | chr4.1:29500471-29500490 | None:intergenic | 20.0% |
| !!! | CTATTTTCTCAAAGTATTAT+TGG | + | chr4.1:29498630-29498649 | None:intergenic | 20.0% |
| !!! | TAAAATTCATTTAGAATGAC+AGG | + | chr4.1:29501178-29501197 | None:intergenic | 20.0% |
| !!! | TCCATATTTTTTTTTTTTGC+AGG | - | chr4.1:29501692-29501711 | MS.gene52122:intron | 20.0% |
| !!! | TGCATTAAATTTGTTTTATG+GGG | - | chr4.1:29498260-29498279 | MS.gene52122:intron | 20.0% |
| !!! | TGTTTGTAATGATTTGATTT+CGG | - | chr4.1:29497690-29497709 | MS.gene52122:intron | 20.0% |
| !!! | TTTTAATGTTTGAAGTTTGT+GGG | - | chr4.1:29498767-29498786 | MS.gene52122:intron | 20.0% |
| ! | AAAAATTGGATGACACTATA+GGG | + | chr4.1:29500239-29500258 | None:intergenic | 25.0% |
| ! | AAAACAACGGTTAATAAAGA+TGG | + | chr4.1:29499387-29499406 | None:intergenic | 25.0% |
| ! | AACCAGTTCAATTAATAGTA+TGG | - | chr4.1:29500619-29500638 | MS.gene52122:intron | 25.0% |
| ! | AACCATACTATTAATTGAAC+TGG | + | chr4.1:29500624-29500643 | None:intergenic | 25.0% |
| ! | AATAATGAAACCCTAAAAGA+TGG | + | chr4.1:29498380-29498399 | None:intergenic | 25.0% |
| ! | ATAAGGAAAAAAAATCTGGA+TGG | + | chr4.1:29499743-29499762 | None:intergenic | 25.0% |
| ! | ATAATGAAACCCTAAAAGAT+GGG | + | chr4.1:29498379-29498398 | None:intergenic | 25.0% |
| ! | ATCAAAATCAATTTGCACTT+TGG | + | chr4.1:29499893-29499912 | None:intergenic | 25.0% |
| ! | ATGCTCAAATATTTACACTT+GGG | - | chr4.1:29497650-29497669 | MS.gene52122:CDS | 25.0% |
| ! | ATTTGAGCATGAAACATAAA+AGG | + | chr4.1:29497640-29497659 | None:intergenic | 25.0% |
| ! | TAAAAATTGGATGACACTAT+AGG | + | chr4.1:29500240-29500259 | None:intergenic | 25.0% |
| ! | TATTTGCAAAGAAAGTAGTT+TGG | + | chr4.1:29500735-29500754 | None:intergenic | 25.0% |
| ! | TCAAAATCAATTTGCACTTT+GGG | + | chr4.1:29499892-29499911 | None:intergenic | 25.0% |
| ! | TGAAGTTTGCAAAAAATAGT+CGG | + | chr4.1:29499014-29499033 | None:intergenic | 25.0% |
| ! | TTTGAGCATGAAACATAAAA+GGG | + | chr4.1:29497639-29497658 | None:intergenic | 25.0% |
| !! | AATTCACTCTATGCATTTTT+CGG | + | chr4.1:29498428-29498447 | None:intergenic | 25.0% |
| !! | CAGAGTTCGTAATTTTAAAT+AGG | - | chr4.1:29501246-29501265 | MS.gene52122:intron | 25.0% |
| !! | TATTTTCAGCGTTAAAATTG+TGG | - | chr4.1:29500298-29500317 | MS.gene52122:intron | 25.0% |
| !! | TTTAATGTTTGAAGTTTGTG+GGG | - | chr4.1:29498768-29498787 | MS.gene52122:intron | 25.0% |
| !! | TTTTCGTTTAATCAATCTGT+TGG | - | chr4.1:29500212-29500231 | MS.gene52122:intron | 25.0% |
| !!! | AATAACTTGTTTTCAAGATC+AGG | + | chr4.1:29499289-29499308 | None:intergenic | 25.0% |
| !!! | GGCTATTTGAACATTTTTTT+CGG | + | chr4.1:29500358-29500377 | None:intergenic | 25.0% |
| !!! | GTTTTAATGTTTGAAGTTTG+TGG | - | chr4.1:29498766-29498785 | MS.gene52122:intron | 25.0% |
| AAAAAAACCAAACACTTTGC+AGG | + | chr4.1:29497950-29497969 | None:intergenic | 30.0% | |
| AAAAAGCCTTCATGGAAAAT+TGG | - | chr4.1:29499829-29499848 | MS.gene52122:intron | 30.0% | |
| AAAACCATTAACTACAGCAA+TGG | + | chr4.1:29499607-29499626 | None:intergenic | 30.0% | |
| AAATGCTAGATACAATTCAG+TGG | + | chr4.1:29501306-29501325 | None:intergenic | 30.0% | |
| AACGGTTAATAAAGATGGTA+AGG | + | chr4.1:29499382-29499401 | None:intergenic | 30.0% | |
| AAGACAAACTTTCAGAACAA+TGG | + | chr4.1:29501519-29501538 | None:intergenic | 30.0% | |
| AATGCTAGATACAATTCAGT+GGG | + | chr4.1:29501305-29501324 | None:intergenic | 30.0% | |
| ACATAGATGTCAAGACTATT+TGG | - | chr4.1:29500437-29500456 | MS.gene52122:intron | 30.0% | |
| AGTGAATTAGTGTATCCTTT+AGG | - | chr4.1:29498440-29498459 | MS.gene52122:intron | 30.0% | |
| ATATGGATAAGTTATGCAAC+AGG | + | chr4.1:29501679-29501698 | None:intergenic | 30.0% | |
| ATGTTGTCAATTCCAAATAG+CGG | + | chr4.1:29500421-29500440 | None:intergenic | 30.0% | |
| ATTTCATCCAACATGAATCA+AGG | + | chr4.1:29498516-29498535 | None:intergenic | 30.0% | |
| ATTTGTGGATATGAGATTGA+AGG | - | chr4.1:29497844-29497863 | MS.gene52122:intron | 30.0% | |
| CAATACTTCATCAGTTGATT+CGG | - | chr4.1:29500956-29500975 | MS.gene52122:intron | 30.0% | |
| CAATCGTTATTTATTGTCAC+AGG | - | chr4.1:29498030-29498049 | MS.gene52122:intron | 30.0% | |
| CAGAGTTTAAATTAAGCTTC+TGG | - | chr4.1:29501269-29501288 | MS.gene52122:intron | 30.0% | |
| CATGCTCAAATATTTACACT+TGG | - | chr4.1:29497649-29497668 | MS.gene52122:CDS | 30.0% | |
| GAAAACAAGTTATTATTGGC+AGG | - | chr4.1:29499295-29499314 | MS.gene52122:CDS | 30.0% | |
| GTGAATTGAGAATGAGAAAA+TGG | + | chr4.1:29497580-29497599 | None:intergenic | 30.0% | |
| TGCTGTTATATAGATGCTAA+TGG | - | chr4.1:29498730-29498749 | MS.gene52122:intron | 30.0% | |
| TGTTTGAAGATGTTAACGAA+AGG | + | chr4.1:29497502-29497521 | None:intergenic | 30.0% | |
| TTAGGCTTATGTGTGATATT+TGG | - | chr4.1:29500016-29500035 | MS.gene52122:intron | 30.0% | |
| TTGATTTACATGTGGATTCT+GGG | - | chr4.1:29501223-29501242 | MS.gene52122:intron | 30.0% | |
| TTGCTAAGCAACTTAATCAT+TGG | + | chr4.1:29501091-29501110 | None:intergenic | 30.0% | |
| TTTGTGGATATGAGATTGAA+GGG | - | chr4.1:29497845-29497864 | MS.gene52122:intron | 30.0% | |
| TTTGTTAAAAACGATGTTCC+TGG | - | chr4.1:29497808-29497827 | MS.gene52122:intron | 30.0% | |
| ! | GAACTAGATGCATTTTATCT+TGG | - | chr4.1:29498969-29498988 | MS.gene52122:intron | 30.0% |
| ! | TGGAGTTTGATAGGTAATTT+TGG | + | chr4.1:29500709-29500728 | None:intergenic | 30.0% |
| ! | TTAATGTTTGAAGTTTGTGG+GGG | - | chr4.1:29498769-29498788 | MS.gene52122:intron | 30.0% |
| ! | TTCATCTTTTGCACTAAAGA+AGG | - | chr4.1:29499852-29499871 | MS.gene52122:intron | 30.0% |
| ! | TTTGATTTACATGTGGATTC+TGG | - | chr4.1:29501222-29501241 | MS.gene52122:intron | 30.0% |
| !! | AATGATTTGATTTCGGCTTT+TGG | - | chr4.1:29497697-29497716 | MS.gene52122:intron | 30.0% |
| !! | ACGATCTTGAATTTTGACAA+AGG | + | chr4.1:29500803-29500822 | None:intergenic | 30.0% |
| !! | ATAGGTAATTTTGGCAATTG+AGG | + | chr4.1:29500700-29500719 | None:intergenic | 30.0% |
| !! | ATGATTTGATTTCGGCTTTT+GGG | - | chr4.1:29497698-29497717 | MS.gene52122:intron | 30.0% |
| !! | ATGGTTTTTCATTTTTGTGC+AGG | - | chr4.1:29499619-29499638 | MS.gene52122:intron | 30.0% |
| !! | TTGTGATTGATGGTTTTCTA+TGG | - | chr4.1:29497870-29497889 | MS.gene52122:intron | 30.0% |
| !! | TTGTTCTGAAAGTTTGTCTT+TGG | - | chr4.1:29501519-29501538 | MS.gene52122:intron | 30.0% |
| !!! | GACTATTTTTTGCAAACTTC+AGG | - | chr4.1:29499013-29499032 | MS.gene52122:intron | 30.0% |
| !!! | TGGATTTGGTTGTTTTAATC+TGG | - | chr4.1:29499062-29499081 | MS.gene52122:CDS | 30.0% |
| AAAAAAATCTGGATGGCTCA+TGG | + | chr4.1:29499736-29499755 | None:intergenic | 35.0% | |
| AAGATCAGGTATCATCTGAA+AGG | + | chr4.1:29499275-29499294 | None:intergenic | 35.0% | |
| AATAATCCTCAATCAGCTTG+TGG | - | chr4.1:29500170-29500189 | MS.gene52122:intron | 35.0% | |
| ACAATCAATGAAAGTTCTGC+AGG | + | chr4.1:29500779-29500798 | None:intergenic | 35.0% | |
| AGAAAATGGATGAGAAGACA+TGG | + | chr4.1:29497566-29497585 | None:intergenic | 35.0% | |
| AGGATTTGAAAGAGATAGAG+AGG | + | chr4.1:29497482-29497501 | None:intergenic | 35.0% | |
| ATATAGATGCTAATGGCTTG+TGG | - | chr4.1:29498737-29498756 | MS.gene52122:intron | 35.0% | |
| ATCACACATAAGCCTAATAG+AGG | + | chr4.1:29500013-29500032 | None:intergenic | 35.0% | |
| ATGCACAATAATTGAAGGAG+AGG | + | chr4.1:29498212-29498231 | None:intergenic | 35.0% | |
| ATGCCATGAATCATGATGTT+GGG | + | chr4.1:29498355-29498374 | None:intergenic | 35.0% | |
| ATGCTAGATACAATTCAGTG+GGG | + | chr4.1:29501304-29501323 | None:intergenic | 35.0% | |
| CAAAAATTCCACTGAGTCAA+CGG | + | chr4.1:29500998-29501017 | None:intergenic | 35.0% | |
| CAAAAATTGCTCATGTGGAA+GGG | - | chr4.1:29500097-29500116 | MS.gene52122:CDS | 35.0% | |
| CAACTAAATTGACAGAAGCA+AGG | + | chr4.1:29500856-29500875 | None:intergenic | 35.0% | |
| CCAACATGAATCAAGGAAAA+AGG | + | chr4.1:29498509-29498528 | None:intergenic | 35.0% | |
| CTGTGGTAAGTTTCATTATC+TGG | - | chr4.1:29499347-29499366 | MS.gene52122:CDS | 35.0% | |
| CTTGCTTCTGTCAATTTAGT+TGG | - | chr4.1:29500854-29500873 | MS.gene52122:intron | 35.0% | |
| GGAAAATGGGAAATCGTATT+TGG | + | chr4.1:29498871-29498890 | None:intergenic | 35.0% | |
| GTATCATCTGAAAGGACAAT+GGG | + | chr4.1:29499267-29499286 | None:intergenic | 35.0% | |
| GTGGACATGAATCATATCAT+TGG | + | chr4.1:29500658-29500677 | None:intergenic | 35.0% | |
| GTTTGATGAAAGTCCTCAAA+GGG | - | chr4.1:29497753-29497772 | MS.gene52122:intron | 35.0% | |
| TAAAACAACCAAATCCACAG+AGG | + | chr4.1:29499059-29499078 | None:intergenic | 35.0% | |
| TAAATTGACAGAAGCAAGGA+TGG | + | chr4.1:29500852-29500871 | None:intergenic | 35.0% | |
| TATCATCTGAAAGGACAATG+GGG | + | chr4.1:29499266-29499285 | None:intergenic | 35.0% | |
| TATGCCATGAATCATGATGT+TGG | + | chr4.1:29498356-29498375 | None:intergenic | 35.0% | |
| TCAAAGCTAAAAAGCCTTCA+TGG | - | chr4.1:29499821-29499840 | MS.gene52122:intron | 35.0% | |
| TCACACATAAGCCTAATAGA+GGG | + | chr4.1:29500012-29500031 | None:intergenic | 35.0% | |
| TCGGAAACAACTACAACAAA+AGG | + | chr4.1:29501033-29501052 | None:intergenic | 35.0% | |
| TCGGTAAAAATTGGCATCTT+TGG | + | chr4.1:29498995-29499014 | None:intergenic | 35.0% | |
| TGTTTGATGAAAGTCCTCAA+AGG | - | chr4.1:29497752-29497771 | MS.gene52122:intron | 35.0% | |
| TTAACCTGGAAACTTAGACA+TGG | - | chr4.1:29498569-29498588 | MS.gene52122:intron | 35.0% | |
| TTACCCAACATCATGATTCA+TGG | - | chr4.1:29498349-29498368 | MS.gene52122:intron | 35.0% | |
| TTCTGTTTATTGTGCTCTTG+TGG | - | chr4.1:29497893-29497912 | MS.gene52122:intron | 35.0% | |
| TTGCAAAGAAAGTAGTTTGG+TGG | + | chr4.1:29500732-29500751 | None:intergenic | 35.0% | |
| TTGTGGACATGTATTTCAAG+TGG | - | chr4.1:29497910-29497929 | MS.gene52122:intron | 35.0% | |
| ! | ACACCTTCAATTTGAAGTGT+AGG | - | chr4.1:29498701-29498720 | MS.gene52122:intron | 35.0% |
| ! | CCTTTTTCCTTGATTCATGT+TGG | - | chr4.1:29498506-29498525 | MS.gene52122:intron | 35.0% |
| ! | CTTGGACAGCTTTGATTAAT+GGG | - | chr4.1:29497785-29497804 | MS.gene52122:intron | 35.0% |
| ! | GATGAACCAATTTTCCATGA+AGG | + | chr4.1:29499838-29499857 | None:intergenic | 35.0% |
| ! | GCAATAGAAACACGTAGTTT+TGG | + | chr4.1:29498307-29498326 | None:intergenic | 35.0% |
| ! | TAAAGAACATGTGTCACTCT+CGG | - | chr4.1:29498669-29498688 | MS.gene52122:intron | 35.0% |
| ! | TTTTCCTATTGCATGTCAAG+TGG | - | chr4.1:29499702-29499721 | MS.gene52122:intron | 35.0% |
| !! | AATTTTGGCAATTGAGGTGT+GGG | + | chr4.1:29500694-29500713 | None:intergenic | 35.0% |
| !! | AGCAACTTAATCATTGGCTT+TGG | + | chr4.1:29501085-29501104 | None:intergenic | 35.0% |
| !! | AGGCTTTATTAGTCATTCTG+TGG | + | chr4.1:29501158-29501177 | None:intergenic | 35.0% |
| !! | GTTGTTTGGTGTCATTTCTT+TGG | - | chr4.1:29501648-29501667 | MS.gene52122:intron | 35.0% |
| !! | TAATTTTGGCAATTGAGGTG+TGG | + | chr4.1:29500695-29500714 | None:intergenic | 35.0% |
| AAACTGAGATACCAGGATGT+CGG | + | chr4.1:29500379-29500398 | None:intergenic | 40.0% | |
| ACGACCATTGCTGTAGTTAA+TGG | - | chr4.1:29499600-29499619 | MS.gene52122:intron | 40.0% | |
| AGAAAATCCCAAACTCTGCA+AGG | + | chr4.1:29501422-29501441 | None:intergenic | 40.0% | |
| AGCTTGGTCAGTGAATTTCT+GGG | - | chr4.1:29501392-29501411 | MS.gene52122:intron | 40.0% | |
| AGGGTTGAATCTTTACCAGA+TGG | + | chr4.1:29499976-29499995 | None:intergenic | 40.0% | |
| ATCCTGGTATCTCAGTTTCA+GGG | - | chr4.1:29500381-29500400 | MS.gene52122:intron | 40.0% | |
| ATGACACCAAACAACTTGAG+AGG | + | chr4.1:29501643-29501662 | None:intergenic | 40.0% | |
| ATGTCCATGTCTAAGTTTCC+AGG | + | chr4.1:29498576-29498595 | None:intergenic | 40.0% | |
| ATTAGAGAGCTTGGGAATGA+GGG | - | chr4.1:29498130-29498149 | MS.gene52122:intron | 40.0% | |
| ATTGCATGTCAAGTGGAGTA+TGG | - | chr4.1:29499709-29499728 | MS.gene52122:intron | 40.0% | |
| ATTGCGCAATAGAATACGCT+AGG | - | chr4.1:29499441-29499460 | MS.gene52122:intron | 40.0% | |
| CAAGCAACAATATCCCTTTG+AGG | + | chr4.1:29497769-29497788 | None:intergenic | 40.0% | |
| CAGCCTACACTTCAAATTGA+AGG | + | chr4.1:29498707-29498726 | None:intergenic | 40.0% | |
| CAGCCTATTACTCAACTCAT+CGG | + | chr4.1:29499543-29499562 | None:intergenic | 40.0% | |
| CGGACATCATACGACAAAAA+CGG | + | chr4.1:29498408-29498427 | None:intergenic | 40.0% | |
| CTCAAAGGGATATTGTTGCT+TGG | - | chr4.1:29497767-29497786 | MS.gene52122:intron | 40.0% | |
| GAAAATCCCAAACTCTGCAA+GGG | + | chr4.1:29501421-29501440 | None:intergenic | 40.0% | |
| GAGTTGAATTGCAATCAGCT+TGG | - | chr4.1:29501376-29501395 | MS.gene52122:intron | 40.0% | |
| GATGCAGATGTAATAACCAG+AGG | + | chr4.1:29498172-29498191 | None:intergenic | 40.0% | |
| GCAAAAATTGCTCATGTGGA+AGG | - | chr4.1:29500096-29500115 | MS.gene52122:CDS | 40.0% | |
| GCTTCTGTCAATTTAGTTGG+AGG | - | chr4.1:29500857-29500876 | MS.gene52122:intron | 40.0% | |
| GGAAACTTAGACATGGACAT+TGG | - | chr4.1:29498576-29498595 | MS.gene52122:intron | 40.0% | |
| GGTATCATCTGAAAGGACAA+TGG | + | chr4.1:29499268-29499287 | None:intergenic | 40.0% | |
| TAAAAACGATGTTCCTGGTG+AGG | - | chr4.1:29497813-29497832 | MS.gene52122:intron | 40.0% | |
| TACTCCACTTGACATGCAAT+AGG | + | chr4.1:29499709-29499728 | None:intergenic | 40.0% | |
| TCAAATACCAGTAGCAGACT+GGG | + | chr4.1:29499581-29499600 | None:intergenic | 40.0% | |
| TGAAATCGGACCTACAAGAA+AGG | - | chr4.1:29500070-29500089 | MS.gene52122:CDS | 40.0% | |
| TGACACCAAACAACTTGAGA+GGG | + | chr4.1:29501642-29501661 | None:intergenic | 40.0% | |
| TGGTCAGAGCGATGTTAATA+AGG | + | chr4.1:29499760-29499779 | None:intergenic | 40.0% | |
| TTAGATGAGCATGCTTAACC+TGG | - | chr4.1:29498555-29498574 | MS.gene52122:intron | 40.0% | |
| TTAGTCATTCTGTGGCTCTT+TGG | + | chr4.1:29501150-29501169 | None:intergenic | 40.0% | |
| TTGATGCGATTAGAGAGCTT+GGG | - | chr4.1:29498122-29498141 | MS.gene52122:intron | 40.0% | |
| TTGCATGTCAAGTGGAGTAT+GGG | - | chr4.1:29499710-29499729 | MS.gene52122:intron | 40.0% | |
| TTGTCTTTGGTCTACAGTGT+GGG | - | chr4.1:29501532-29501551 | MS.gene52122:intron | 40.0% | |
| TTTACGATAACCCGTTCCAT+TGG | - | chr4.1:29497607-29497626 | MS.gene52122:CDS | 40.0% | |
| TTTGATGCGATTAGAGAGCT+TGG | - | chr4.1:29498121-29498140 | MS.gene52122:intron | 40.0% | |
| TTTGTCTTTGGTCTACAGTG+TGG | - | chr4.1:29501531-29501550 | MS.gene52122:intron | 40.0% | |
| ! | AAAACATGTGTCGATCGACA+GGG | - | chr4.1:29498808-29498827 | MS.gene52122:intron | 40.0% |
| ! | ATAGAAGCACAGAAGCCTAA+AGG | + | chr4.1:29498458-29498477 | None:intergenic | 40.0% |
| ! | CAAAGAAAGTAGTTTGGTGG+TGG | + | chr4.1:29500729-29500748 | None:intergenic | 40.0% |
| ! | CATGGCATACCCATCTTTTA+GGG | - | chr4.1:29498367-29498386 | MS.gene52122:intron | 40.0% |
| ! | GAATAGAAGTATGAGTGCCA+TGG | + | chr4.1:29500490-29500509 | None:intergenic | 40.0% |
| ! | GCTTGGACAGCTTTGATTAA+TGG | - | chr4.1:29497784-29497803 | MS.gene52122:intron | 40.0% |
| ! | GGCAGGATTTTCAGAAATAC+AGG | - | chr4.1:29499312-29499331 | MS.gene52122:CDS | 40.0% |
| ! | TATCTCCCTCTCAAGTTGTT+TGG | - | chr4.1:29501634-29501653 | MS.gene52122:intron | 40.0% |
| ! | TCAGAGTGTTAAAACCTGGT+GGG | - | chr4.1:29499128-29499147 | MS.gene52122:CDS | 40.0% |
| ! | TCATGGCATACCCATCTTTT+AGG | - | chr4.1:29498366-29498385 | MS.gene52122:intron | 40.0% |
| ! | TCCACATGAGCAATTTTTGC+AGG | + | chr4.1:29500096-29500115 | None:intergenic | 40.0% |
| ! | TGTCCGATGAGTTGAGTAAT+AGG | - | chr4.1:29499537-29499556 | MS.gene52122:intron | 40.0% |
| ! | TTTTCGCTTATGCTCAAGAC+CGG | + | chr4.1:29498911-29498930 | None:intergenic | 40.0% |
| ! | TTTTTGCAGGCCTTTCTTGT+AGG | + | chr4.1:29500083-29500102 | None:intergenic | 40.0% |
| !! | AAAGATGTATGGTGCTGTGT+TGG | - | chr4.1:29498060-29498079 | MS.gene52122:intron | 40.0% |
| !! | GAGGAGAAAGTGTTGAAGTT+AGG | - | chr4.1:29500128-29500147 | MS.gene52122:CDS | 40.0% |
| !! | GCATTTGCTGCTTCTGTTTT+CGG | + | chr4.1:29501052-29501071 | None:intergenic | 40.0% |
| !! | TCTAGCTTTGTCCCTCTATT+AGG | - | chr4.1:29499998-29500017 | MS.gene52122:intron | 40.0% |
| !! | TTGAAGGGTGTTGTGATTGA+TGG | - | chr4.1:29497860-29497879 | MS.gene52122:intron | 40.0% |
| AAATCCTCCCAATCTGCTGT+GGG | - | chr4.1:29499166-29499185 | MS.gene52122:intron | 45.0% | |
| AACCCTGAAACTGAGATACC+AGG | + | chr4.1:29500386-29500405 | None:intergenic | 45.0% | |
| AACTTCAGGCAAGTTTCCAG+TGG | - | chr4.1:29499027-29499046 | MS.gene52122:CDS | 45.0% | |
| AACTTGCAACAGCTCCCAAT+AGG | + | chr4.1:29500922-29500941 | None:intergenic | 45.0% | |
| AAGAAACCTGAACTGCCATC+TGG | - | chr4.1:29499958-29499977 | MS.gene52122:intron | 45.0% | |
| ACAGGCGTTACAATCTTCTG+TGG | - | chr4.1:29499330-29499349 | MS.gene52122:CDS | 45.0% | |
| AGAGGGACAAAGCTAGAGAA+GGG | + | chr4.1:29499995-29500014 | None:intergenic | 45.0% | |
| AGCATTGCACATGCGGAAAA+TGG | + | chr4.1:29498885-29498904 | None:intergenic | 45.0% | |
| AGCTGACATGTTGTGCAACA+GGG | - | chr4.1:29500042-29500061 | MS.gene52122:CDS | 45.0% | |
| ATAACCCGTTCCATTGGTGA+TGG | - | chr4.1:29497613-29497632 | MS.gene52122:CDS | 45.0% | |
| ATTGGGAGCTGTTGCAAGTT+TGG | - | chr4.1:29500922-29500941 | MS.gene52122:intron | 45.0% | |
| CAGCTTGGTCAGTGAATTTC+TGG | - | chr4.1:29501391-29501410 | MS.gene52122:intron | 45.0% | |
| CAGGATGCTGCAAAGATGTA+TGG | - | chr4.1:29498049-29498068 | MS.gene52122:intron | 45.0% | |
| CATAAAAGGGCCATCACCAA+TGG | + | chr4.1:29497626-29497645 | None:intergenic | 45.0% | |
| CATCCTGGTATCTCAGTTTC+AGG | - | chr4.1:29500380-29500399 | MS.gene52122:intron | 45.0% | |
| CTTCTCACGTGCTTCCTATT+GGG | - | chr4.1:29500905-29500924 | MS.gene52122:intron | 45.0% | |
| GAATGAGGGGGTTGAGAAAT+TGG | - | chr4.1:29498144-29498163 | MS.gene52122:intron | 45.0% | |
| GATTAGAGAGCTTGGGAATG+AGG | - | chr4.1:29498129-29498148 | MS.gene52122:intron | 45.0% | |
| GCAACAGGGGATTGTGAAAT+CGG | - | chr4.1:29500056-29500075 | MS.gene52122:CDS | 45.0% | |
| GCATCAAACACTTGACTGAC+AGG | + | chr4.1:29498109-29498128 | None:intergenic | 45.0% | |
| GCATTGCACATGCGGAAAAT+GGG | + | chr4.1:29498884-29498903 | None:intergenic | 45.0% | |
| GCCTGCAAAAATTGCTCATG+TGG | - | chr4.1:29500092-29500111 | MS.gene52122:CDS | 45.0% | |
| GGAATCTTCCTCTGTGGATT+TGG | - | chr4.1:29499048-29499067 | MS.gene52122:CDS | 45.0% | |
| GGTTGAGAAATTGGATCCTC+TGG | - | chr4.1:29498153-29498172 | MS.gene52122:intron | 45.0% | |
| GTCAAATACCAGTAGCAGAC+TGG | + | chr4.1:29499582-29499601 | None:intergenic | 45.0% | |
| GTCAATTCCAAATAGCGGCA+TGG | + | chr4.1:29500416-29500435 | None:intergenic | 45.0% | |
| TAGAGGGACAAAGCTAGAGA+AGG | + | chr4.1:29499996-29500015 | None:intergenic | 45.0% | |
| TAGCTGACATGTTGTGCAAC+AGG | - | chr4.1:29500041-29500060 | MS.gene52122:CDS | 45.0% | |
| TCTTCTCACGTGCTTCCTAT+TGG | - | chr4.1:29500904-29500923 | MS.gene52122:intron | 45.0% | |
| TCTTGAGTCAGTTGGTCGAT+AGG | + | chr4.1:29499103-29499122 | None:intergenic | 45.0% | |
| TCTTTACCAGATGGCAGTTC+AGG | + | chr4.1:29499967-29499986 | None:intergenic | 45.0% | |
| TGAGGACTTCTTGAGTCAGT+TGG | + | chr4.1:29499111-29499130 | None:intergenic | 45.0% | |
| TGCTTAGCAAATGCAGCGTA+TGG | - | chr4.1:29501101-29501120 | MS.gene52122:CDS | 45.0% | |
| TGGTATCTCAGTTTCAGGGT+TGG | - | chr4.1:29500385-29500404 | MS.gene52122:intron | 45.0% | |
| TGTGGGATGTTGAGTTAGAG+TGG | + | chr4.1:29500677-29500696 | None:intergenic | 45.0% | |
| TGTTCAAATAGCCGACATCC+TGG | - | chr4.1:29500365-29500384 | MS.gene52122:intron | 45.0% | |
| TTAGAGAGCTTGGGAATGAG+GGG | - | chr4.1:29498131-29498150 | MS.gene52122:intron | 45.0% | |
| TTTGGTCTACAGTGTGGGTT+AGG | - | chr4.1:29501537-29501556 | MS.gene52122:intron | 45.0% | |
| ! | ATGTTTGAAGTTTGTGGGGG+TGG | - | chr4.1:29498772-29498791 | MS.gene52122:intron | 45.0% |
| ! | CTCAGAGTGTTAAAACCTGG+TGG | - | chr4.1:29499127-29499146 | MS.gene52122:CDS | 45.0% |
| ! | GAAAACATGTGTCGATCGAC+AGG | - | chr4.1:29498807-29498826 | MS.gene52122:intron | 45.0% |
| ! | GATGATGCCTGCAAAGTGTT+TGG | - | chr4.1:29497940-29497959 | MS.gene52122:intron | 45.0% |
| ! | GTCCTCAGAGTGTTAAAACC+TGG | - | chr4.1:29499124-29499143 | MS.gene52122:CDS | 45.0% |
| ! | TACCTTCTCGCCCATTTTGA+AGG | + | chr4.1:29501607-29501626 | None:intergenic | 45.0% |
| ! | TGTTTGAAGTTTGTGGGGGT+GGG | - | chr4.1:29498773-29498792 | MS.gene52122:intron | 45.0% |
| ! | TTGGTCTACAGTGTGGGTTA+GGG | - | chr4.1:29501538-29501557 | MS.gene52122:intron | 45.0% |
| ! | TTTTTGCAGGTTGCACTGTC+CGG | - | chr4.1:29501705-29501724 | MS.gene52122:intron | 45.0% |
| !! | ATTTCGGCTTTTGGGTGTTC+GGG | - | chr4.1:29497706-29497725 | MS.gene52122:intron | 45.0% |
| !! | CACCAGGTTTTAACACTCTG+AGG | + | chr4.1:29499129-29499148 | None:intergenic | 45.0% |
| !! | GATTTCGGCTTTTGGGTGTT+CGG | - | chr4.1:29497705-29497724 | MS.gene52122:intron | 45.0% |
| !! | GTTTGGTGGTGGAGTTTGAT+AGG | + | chr4.1:29500718-29500737 | None:intergenic | 45.0% |
| !! | ATAATGATTTAATTAAAAAT+TGG | + | chr4.1:29500253-29500272 | None:intergenic | 5.0% |
| !!! | ATTTTTAATTAAATCATTAT+TGG | - | chr4.1:29500253-29500272 | MS.gene52122:intron | 5.0% |
| AAGGGCCATCACCAATGGAA+CGG | + | chr4.1:29497621-29497640 | None:intergenic | 50.0% | |
| ACACTGCCACAAGCTGATTG+AGG | + | chr4.1:29500179-29500198 | None:intergenic | 50.0% | |
| ACCTGAACCCACAGCAGATT+GGG | + | chr4.1:29499176-29499195 | None:intergenic | 50.0% | |
| ATGTGGAAGGGCAGAAGAAG+AGG | - | chr4.1:29500109-29500128 | MS.gene52122:CDS | 50.0% | |
| CAAATCACTTGTGCCTCACC+AGG | + | chr4.1:29497829-29497848 | None:intergenic | 50.0% | |
| CAAATCCTCCCAATCTGCTG+TGG | - | chr4.1:29499165-29499184 | MS.gene52122:intron | 50.0% | |
| CGAATAAGAGTTGTCCCACC+AGG | + | chr4.1:29499145-29499164 | None:intergenic | 50.0% | |
| GCTGACATGTTGTGCAACAG+GGG | - | chr4.1:29500043-29500062 | MS.gene52122:CDS | 50.0% | |
| GGACTGCCTGCCTTCAAAAT+GGG | - | chr4.1:29501594-29501613 | MS.gene52122:intron | 50.0% | |
| GGGATTCCCTTGCAGAGTTT+GGG | - | chr4.1:29501412-29501431 | MS.gene52122:intron | 50.0% | |
| GGTGAGGCACAAGTGATTTG+TGG | - | chr4.1:29497829-29497848 | MS.gene52122:intron | 50.0% | |
| GTCTGCAGCAAGGAAGTTAC+CGG | + | chr4.1:29501727-29501746 | None:intergenic | 50.0% | |
| TAGAGAGCTTGGGAATGAGG+GGG | - | chr4.1:29498132-29498151 | MS.gene52122:intron | 50.0% | |
| TCCACAGAGGAAGATTCCAC+TGG | + | chr4.1:29499046-29499065 | None:intergenic | 50.0% | |
| TCCAGTGGAATCTTCCTCTG+TGG | - | chr4.1:29499042-29499061 | MS.gene52122:CDS | 50.0% | |
| TGCAGTACCTGCCCTTACAA+GGG | - | chr4.1:29501573-29501592 | MS.gene52122:intron | 50.0% | |
| TGCCTTCAAAATGGGCGAGA+AGG | - | chr4.1:29501602-29501621 | MS.gene52122:intron | 50.0% | |
| TGCTGTGGGTTCAGGTGATA+AGG | - | chr4.1:29499180-29499199 | MS.gene52122:intron | 50.0% | |
| TGGGATTCCCTTGCAGAGTT+TGG | - | chr4.1:29501411-29501430 | MS.gene52122:intron | 50.0% | |
| !! | TGGTCTACAGTGTGGGTTAG+GGG | - | chr4.1:29501539-29501558 | MS.gene52122:intron | 50.0% |
| !! | TGGTGCTGTGTTGGCATGTA+CGG | - | chr4.1:29498069-29498088 | MS.gene52122:intron | 50.0% |
| !! | TTCTCGCCCATTTTGAAGGC+AGG | + | chr4.1:29501603-29501622 | None:intergenic | 50.0% |
| !! | TTTCGGCTTTTGGGTGTTCG+GGG | - | chr4.1:29497707-29497726 | MS.gene52122:intron | 50.0% |
| AAGGCAGGCAGTCCCTTGTA+AGG | + | chr4.1:29501588-29501607 | None:intergenic | 55.0% | |
| AGGCAGGCAGTCCCTTGTAA+GGG | + | chr4.1:29501587-29501606 | None:intergenic | 55.0% | |
| AGGGCCATCACCAATGGAAC+GGG | + | chr4.1:29497620-29497639 | None:intergenic | 55.0% | |
| CACCTGAACCCACAGCAGAT+TGG | + | chr4.1:29499177-29499196 | None:intergenic | 55.0% | |
| CCGCATGTGCAATGCTACTC+CGG | - | chr4.1:29498889-29498908 | MS.gene52122:intron | 55.0% | |
| CCGGAGTAGCATTGCACATG+CGG | + | chr4.1:29498892-29498911 | None:intergenic | 55.0% | |
| CTTGAAGCCCAGTCTGCTAC+TGG | - | chr4.1:29499571-29499590 | MS.gene52122:intron | 55.0% | |
| GACAGGGTCTTGGCAGAAGT+TGG | - | chr4.1:29498824-29498843 | MS.gene52122:intron | 55.0% | |
| GGACTCTCCATGCCGCTATT+TGG | - | chr4.1:29500406-29500425 | MS.gene52122:intron | 55.0% | |
| GGGACTGCCTGCCTTCAAAA+TGG | - | chr4.1:29501593-29501612 | MS.gene52122:intron | 55.0% | |
| GTGCAGTACCTGCCCTTACA+AGG | - | chr4.1:29501572-29501591 | MS.gene52122:intron | 55.0% | |
| TCCCAATCTGCTGTGGGTTC+AGG | - | chr4.1:29499172-29499191 | MS.gene52122:intron | 55.0% | |
| TGAACCCACAGCAGATTGGG+AGG | + | chr4.1:29499173-29499192 | None:intergenic | 55.0% | |
| TGAAGTTTGTGGGGGTGGGT+GGG | - | chr4.1:29498777-29498796 | MS.gene52122:intron | 55.0% | |
| TTGAAGTTTGTGGGGGTGGG+TGG | - | chr4.1:29498776-29498795 | MS.gene52122:intron | 55.0% | |
| ! | TGTGTCGATCGACAGGGTCT+TGG | - | chr4.1:29498814-29498833 | MS.gene52122:intron | 55.0% |
| !! | ATTCGCTGCCGTTGACTCAG+TGG | - | chr4.1:29500987-29501006 | MS.gene52122:intron | 55.0% |
| !! | GTGGGTTAGGGGATGCGTTT+AGG | - | chr4.1:29501550-29501569 | MS.gene52122:intron | 55.0% |
| AGGCAGTCCCTTGTAAGGGC+AGG | + | chr4.1:29501583-29501602 | None:intergenic | 60.0% | |
| AGTTTGTGGGGGTGGGTGGG+TGG | - | chr4.1:29498780-29498799 | MS.gene52122:intron | 65.0% | |
| GTTTGTGGGGGTGGGTGGGT+GGG | - | chr4.1:29498781-29498800 | MS.gene52122:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 29497469 | 29501752 | 29497469 | ID=MS.gene52122 |
| chr4.1 | mRNA | 29497469 | 29501752 | 29497469 | ID=MS.gene52122.t1;Parent=MS.gene52122 |
| chr4.1 | exon | 29501750 | 29501752 | 29501750 | ID=MS.gene52122.t1.exon1;Parent=MS.gene52122.t1 |
| chr4.1 | CDS | 29501750 | 29501752 | 29501750 | ID=cds.MS.gene52122.t1;Parent=MS.gene52122.t1 |
| chr4.1 | exon | 29501022 | 29501169 | 29501022 | ID=MS.gene52122.t1.exon2;Parent=MS.gene52122.t1 |
| chr4.1 | CDS | 29501022 | 29501169 | 29501022 | ID=cds.MS.gene52122.t1;Parent=MS.gene52122.t1 |
| chr4.1 | exon | 29500020 | 29500186 | 29500020 | ID=MS.gene52122.t1.exon3;Parent=MS.gene52122.t1 |
| chr4.1 | CDS | 29500020 | 29500186 | 29500020 | ID=cds.MS.gene52122.t1;Parent=MS.gene52122.t1 |
| chr4.1 | exon | 29499870 | 29499941 | 29499870 | ID=MS.gene52122.t1.exon4;Parent=MS.gene52122.t1 |
| chr4.1 | CDS | 29499870 | 29499941 | 29499870 | ID=cds.MS.gene52122.t1;Parent=MS.gene52122.t1 |
| chr4.1 | exon | 29499242 | 29499401 | 29499242 | ID=MS.gene52122.t1.exon5;Parent=MS.gene52122.t1 |
| chr4.1 | CDS | 29499242 | 29499401 | 29499242 | ID=cds.MS.gene52122.t1;Parent=MS.gene52122.t1 |
| chr4.1 | exon | 29499025 | 29499158 | 29499025 | ID=MS.gene52122.t1.exon6;Parent=MS.gene52122.t1 |
| chr4.1 | CDS | 29499025 | 29499158 | 29499025 | ID=cds.MS.gene52122.t1;Parent=MS.gene52122.t1 |
| chr4.1 | exon | 29497598 | 29497672 | 29497598 | ID=MS.gene52122.t1.exon7;Parent=MS.gene52122.t1 |
| chr4.1 | CDS | 29497598 | 29497672 | 29497598 | ID=cds.MS.gene52122.t1;Parent=MS.gene52122.t1 |
| chr4.1 | exon | 29497469 | 29497507 | 29497469 | ID=MS.gene52122.t1.exon8;Parent=MS.gene52122.t1 |
| chr4.1 | CDS | 29497469 | 29497507 | 29497469 | ID=cds.MS.gene52122.t1;Parent=MS.gene52122.t1 |
| Gene Sequence |
| Protein sequence |
