AlfalfaGEDB | MS.gene48037

M. sativa cultivar XinJiangDaYe / MS.gene48037

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48037.t1	XP_003617385.1	98.2	490	9	0	2	491	3	492	1.40E-253	885.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48037.t1	G7K3B9	98.2	490	9	0	2	491	3	492	1.0e-253	885.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene48037	0.864675	1.03E-64	-1.69E-46
MS.gene04918	MS.gene48037	0.838694	2.47E-57	-1.69E-46
MS.gene04919	MS.gene48037	0.810479	1.13E-50	-1.69E-46
MS.gene04920	MS.gene48037	0.822847	1.90E-53	-1.69E-46
MS.gene049254	MS.gene48037	0.820253	7.56E-53	-1.69E-46
MS.gene049283	MS.gene48037	0.832102	1.14E-55	-1.69E-46
MS.gene049350	MS.gene48037	0.83336	5.58E-56	-1.69E-46
MS.gene049368	MS.gene48037	0.849896	2.41E-60	-1.69E-46
MS.gene049411	MS.gene48037	0.822214	2.67E-53	-1.69E-46
MS.gene049499	MS.gene48037	0.839241	1.78E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene012136	MS.gene48037	PPI
MS.gene28870	MS.gene48037	PPI
MS.gene44220	MS.gene48037	PPI
MS.gene48037	MS.gene44220	PPI
MS.gene48037	MS.gene59498	PPI
MS.gene48037	MS.gene017610	PPI
MS.gene64799	MS.gene48037	PPI
MS.gene67474	MS.gene48037	PPI
MS.gene67475	MS.gene48037	PPI
MS.gene67709	MS.gene48037	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48037.t1	MTR_5g091000	98.163	490	9	0	2	491	3	492	0.0	992

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48037.t1	AT2G30880	72.946	499	125	6	2	491	7	504	0.0	668
MS.gene48037.t1	AT2G30880	79.733	375	76	0	2	376	7	381	0.0	582

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Find 109 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTCTGAGAAGCAGC+AGG	0.553932	5.2:-77010995	MS.gene48037:CDS
AAAATTTGGCTCGAGACCTT+CGG	0.369260	5.2:-77011152	MS.gene48037:CDS
AAATATGTGGCGTACTGAAC+TGG	0.336452	5.2:-77010541	MS.gene48037:CDS
AAATTTGGCTCGAGACCTTC+GGG	0.393652	5.2:-77011151	MS.gene48037:CDS
AACACTAAGAGTTAAGGATG+AGG	0.588499	5.2:-77011181	MS.gene48037:CDS
AACTTCCTCATTTAGATATC+GGG	0.385027	5.2:-77013735	MS.gene48037:intron
AAGAAATGAGCCAACTGTCA+AGG	0.539148	5.2:-77014075	MS.gene48037:CDS
AAGAGCGGAAGAGAAGGTCA+GGG	0.649867	5.2:-77010475	MS.gene48037:CDS
AAGAGTTTGATCCTTGTTCG+TGG	0.588496	5.2:+77009396	None:intergenic
AAGCAGCTTGGATATTCCAG+TGG	0.674719	5.2:-77009444	MS.gene48037:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAACACTTACGTGATC+TGG	-	chr5.2:77009771-77009790	MS.gene48037:intron	30.0%
AACTTCCTCATTTAGATATC+GGG	-	chr5.2:77011113-77011132	MS.gene48037:CDS	30.0%
AATAGGTTTCTTCTTGGAAA+GGG	-	chr5.2:77011907-77011926	MS.gene48037:intron	30.0%
AGATAGAACAAACCAAAATG+AGG	+	chr5.2:77012354-77012373	None:intergenic	30.0%
ATGAAATTAAAAACAAGGCG+AGG	+	chr5.2:77011237-77011256	None:intergenic	30.0%
ATGAATCATATTAGAACCCA+AGG	+	chr5.2:77010900-77010919	None:intergenic	30.0%
ATGCACTGAACAAAAGAAAT+AGG	-	chr5.2:77013252-77013271	MS.gene48037:intron	30.0%
ATTAACAAAGCTTCAAGCAA+GGG	+	chr5.2:77014538-77014557	None:intergenic	30.0%
ATTTGTATAGGGATGTAGAT+CGG	-	chr5.2:77013576-77013595	MS.gene48037:intron	30.0%
CAAAATATATCTCTCTCAGA+AGG	+	chr5.2:77011574-77011593	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	77009382	77015488	77009382	ID=MS.gene48037
chr5.2	mRNA	77009382	77015488	77009382	ID=MS.gene48037.t1;Parent=MS.gene48037
chr5.2	exon	77015372	77015488	77015372	ID=MS.gene48037.t1.exon1;Parent=MS.gene48037.t1
chr5.2	CDS	77015372	77015488	77015372	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1
chr5.2	exon	77014211	77014272	77014211	ID=MS.gene48037.t1.exon2;Parent=MS.gene48037.t1
chr5.2	CDS	77014211	77014272	77014211	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1
chr5.2	exon	77014020	77014103	77014020	ID=MS.gene48037.t1.exon3;Parent=MS.gene48037.t1
chr5.2	CDS	77014020	77014103	77014020	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1
chr5.2	exon	77013858	77013889	77013858	ID=MS.gene48037.t1.exon4;Parent=MS.gene48037.t1
chr5.2	CDS	77013858	77013889	77013858	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1
chr5.2	exon	77013661	77013742	77013661	ID=MS.gene48037.t1.exon5;Parent=MS.gene48037.t1
chr5.2	CDS	77013661	77013742	77013661	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1
chr5.2	exon	77012526	77012754	77012526	ID=MS.gene48037.t1.exon6;Parent=MS.gene48037.t1
chr5.2	CDS	77012526	77012754	77012526	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1
chr5.2	exon	77010978	77011205	77010978	ID=MS.gene48037.t1.exon7;Parent=MS.gene48037.t1
chr5.2	CDS	77010978	77011205	77010978	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1
chr5.2	exon	77010357	77010649	77010357	ID=MS.gene48037.t1.exon8;Parent=MS.gene48037.t1
chr5.2	CDS	77010357	77010649	77010357	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1
chr5.2	exon	77009382	77009730	77009382	ID=MS.gene48037.t1.exon9;Parent=MS.gene48037.t1
chr5.2	CDS	77009382	77009730	77009382	ID=cds.MS.gene48037.t1;Parent=MS.gene48037.t1

Gene Sequence

>MS.gene48037

ATGTCGCAGCGAGCTGTTGAAAACACAGAGAATAGTTTGGAGAAGATCAAGCGTCAGCTAGCTTCTGCTTCTGGTAGAAATCTGTTGCAGGGTCCACTTCTTAAGAGATCCGAGACTGTAATTAACTTTTCCTCTTTTTATTTGATTAACTGATCACTTTGTTGTGTTATGTTTGTTTAATTACTAAGATTGCCCCTTTTCATATTAATCTTCAAGTTTCAATTTTTATTGTGTTAATGGAATTATGATTACTTTGTAATTCAAATGTGCTGTGGGATTATTGTGTAAATAGAATTAGAGTTTTTTTAGTTACACCCCAAAAACATCTAGTTACACCCAAAATTGATTAGTATTTTATCGTTATACCAAAGTTGCCCTTTGTCACACATAAATTAACACTTACGTGATCTGGTTTAACTTATAAATTATATATAATTTCAACGTGAACTCAATTTACGTTGGTGTAAGTGAATTTAGTTCACGTAGTAAATTTTTCAATTGCAATCTTTTTTTCAATTTCAATAACCTTGAATTCAGGTATGCTATGAATAAGTCTAAATTATTCTATGATATGTTCCTAGATTTCGTACTGATCCATTCTAAGTGCAACCAAGGTGCAGAAGAAAAATAACTTAAGTAACCAATTCACGTGAATTAAGTAACACTTTTCAATTTCTTTTCATGTTTTTAATTGCCCTAAGTTTTGAATGTGTTGCAGTGATTATGTTTCACGTACGCTGCCAAATTTAGGTAAAACCAAGATGAATTGTAAAAGTTTAATTATGTTCAACTGTGAAAATTGAGTTCAATTGTTTTAATTGAATGCAGAAGAAGATGAAGAGGAGGAGTAATTGTTGAAAATTTAAAAAGGATTGAAGGGTATTTTTGTCAAATCTGGGTGTAACTGAAATTTCATGGGGTGTAACTAAAATAAGTCATAGAATTATGATTACCTTGTAATTCAAATGCGTTGTGGGTTTTGTGATCTCTGAAGCACAGACACTTAGTGTACGACACATTGAATTATGTCATGTTTTCAAATTATTATCGGTGTGGACGTGTCAGCGTCCCTGTTTGTGTCGGTGCTTCATAGTTTGTGATCCTTTGAATATCCAATCTTGTTTTGACTTTCTTAGAAAAAAATGCTATGCTGTTTGAATTTTCCCTCGAATGTTACCTAGCTTATGTGAAAAATTTGTTATTTTTTTGGTGACAGCTGAGGAAATGGAACGAACGTTGGGTGATCTTGGACCCAACAACTGGGAAAATGGAATACAAGTAGGTTTATATATAAATAAGCTTCATATATTATTTTTGTGTGAAGGGAAAAGTAGTAACACTTTGGATGCTGATCATCTGTGCTGTTATTTTTCTTTGATTTTTAGGTTAAGAAGAAATGAGCCAACTGTCAAGGGAACAATTCTATTTGACGCAAATAGCACCATTACTGTATCTCCTGTGAATTTCAAGTAAGCATGGTGTTTTTTTTTTAACATAACCCTATTTTACTTGGTGCCTTGGGTTCTAATATGATTCATGAATGTTTACTTTATGAATTTATCGTTTTATACTAATTTGATTTATTTCGGTGAATTACAGTGGGCTACCGAAGTATGATGGATGCTGCATTTGTATCCTTTTTTTGTCATTTTTATATTTTTATAATTTTCGGGTCATACAAATCATATATTGGTAATGTATGTATCAAAAATACTCTTCTTGTCGCATCTTAACTTCCTCATTTAGATATCGGGACACCACAGAAGAAGGATTATTTCCTATGCGCGGAGACTCCTGGTGCAGCTCGAGCATGGGTGTCAACATTGCAGTATGTTTCATAATCCCCGACTTTCCTCGCCTTGTTTTTAATTTCATATTGGTGTGCAATATATTTTGAAATTAAATGGCTCTAACGTTCTTTTGTACAAAACATGAATTTATAAGATATTTTTAGCGGGTGTAGTTACATACTTGAGCCAAAAACTCCGTTAGGTTCCTAAAAGGAAAAAGAGTAGAAAATAAGATGACTGCTTAGTTGTTTGGTAGGAGAGGAAACATATGGAAAGAAAGTTATAACTTTTTTGTTCTCTTGCTTGATTGTACAAAAATACCTTCCAAAAACTAAAATATAACAAAAAGACAGTTCAAATCAGAGAAAGAAAAAGAAATTATTTGCTTGCTGTTTTCCTCCTTCTGAGAGAGATATATTTTGTGAGGGCCACAAAGCATTTTTCCTTCCTCGCTCACTGTTACGGAACGCCAAATGACGGAGGAGTTTTTCGAGTTTTGTACTTTCCTTTTTCCGTCCAATTTTTCAGTTTGTTTTTTTTCGCTCTAAACTGAGCGTAAAAGTAATGTTACTTATGCGTATAGTTCTCCATTACTTTCACTAAATTCTTGCTAAAACTTGTAAGGAACGTTACAATTTCATGCCCTGTTTAAAATTATGGAATGTTCTTTACTGCAGTATCTTCCTTCAATAATTTTCTAAGGGTTATCAACTAAATGTTTTTTATACTCACGTTAATAGGTTTCTTCTTGGAAAGGGAGACCCATAGTTTAGCTTAATCTTCTATGTTCCTCTTATTGTTATTTATTCTATTCTATTATCTTGTGTTCTTGCTTTCCATTAAAATGGATCAATTTGTATGATTACTGCACTGTTTCTGCAATTTTTCTTGTGTAATAGTTTGCAATTATTTCCTTGTCTGATTTATTTTTACTCTCACACCAGTGCCACTCAGTTGGTTCTAAAAGCTCATAAAGAAGCTGTGAATTCCTTAAGTGGGAATGGTTCTACAAAATTAGGAACTGTTGCAACTGTTGTTGCTGCAGCCAACTCAACAGCCTCGGAATGTTCTAAAGAAATTGAAGCGGCAATGCAGATTTCTTTGCGAAATGCTCTTGGAATGATGCCAAATAGGACTACTGATGGTCCTATGGATGATTTAACAATCATGAAGGTACACCCTCATTTTGGTTTGTTCTATCTTTCTTTCTGTTTCAATGCATTCAGCTTTCATGATGGTGATGCAGGGTCGATGATCCTTATATTTTTCCCTTCAGTACCGTGTTTCAATCTTAATCTGCATATTGTAAAATTTTCTCTAAAAGCTTGGCTTTAGTACACCCTTTGTGTTTTTTTTCTTTCTTCCTTATCTTTGTCTGGTTTGGACTTTGCTGGATTCCTTTTGTTGCTTCTTGATGTGTTGAGTCTGTAAGTAGTTATCAGTTGCCATCTCTCTAGTCTTTACTTTCATCATACCTTATACTGTTAGAAGGAACGTTTGTTGAATTAGTTCAATCACTCTTAGTATCCTAGACAAACAATTCAATCGTCTTCATTGACTGGAGGTTTAAGAGAGGCAAGGATAGGTTAATTAATATTTAATTAATAACAATTAATGAAACCTTAATGAATGAAAAGGGGCCGGCATATACAGTCTCAGGTCTACATGGTATCAGCTAGGATCTTCACTCTTAACATCAAATTCACCTTCAATAATAATTGAAGTCTTCAGAAAAACACAATAAATGGGATCATAATAAAATTTGAGATAATTTGTTTTTTTAATTAGAAAAAACTGCAAAAGAAAAAGAAAATTAAGGGCTTTTCTGAGATGTTGAAATGTGTAGCTTCTTAAGAACATAGAAGTTACTTTTTAGAGCTTATCCAAGCTTAGCTTTGATTGGATACCTTTTTGCTAGAAAATTTTCCAAAAAGAAACCTAAAAAAATTGAGTGTGTGATTCTATGAATTTAATTGTCATACTTTTTATGCAATGCATCGAATTGAACAGTGGCTGTGGCAAGGTCCACATTATGGCTGAATCCAGTTTGTTGAATCATAATGAGGATTTTTTGTATGTCATGCACTGAACAAAAGAAATAGGTATTTCCTTATTACTACATTGCTTGTATTTTATAAACGGTTCAATTTTTCCCTTCGGCTTTAGAGTTTGTAGAGGCCCCTTTGTATCGCTGGTTTGTTGGCTCTCTGACCTTCATACACTTCTGGTTTGCGTTCTCTTGTTTCGAGAATAAGGAAGTGAAGGGAAAAAAAAAGTGTCACTGGGAATTTCCTTTTTTTCTTAGTATATTGTGGGGCTTGAATCTAGTGGCAAAGGTTTCGAAGAAGAAATGCAAATATGATATATAAATAGAGAAAATGAAATTTTTAATTAGACAAGGAATATTTGTATAGGGATGTAGATCGGTATCTTGGGCCTTTATGGTTCTTTATTGCTTTGGATTCAGTCTGAAAATGCTGTTTTACTCAATAGGAAACACTAAGAGTTAAGGATGAGGAGCTACAAAATTTGGCTCGAGACCTTCGGGCACGTGATTCAACTATAACAGAAATAGCGGATAAATTATCTGAGACTGCCGAAGCCGCCGAGGCAGCAGCATCTGCTGCTTATACTATGGATGAGCAACGGAGAATTGTTTGTGCAGAAATTGAGCGTTTGAGAAAAGATTCTGAGAAGCAGCAGGAGGTGTATGCACAGAAGGTATGCTTTAATTTTTGGCGGATAGAAATTTGAGCAACTCTTGAAAAACTGTTTCGGATGAATGACCCTTGGCCAATGTTGTTAAATAGCGGTTATAGTGGTGCTATAGCGCTTTACCGTAGCGGAATTTGAACAAATCGTTATTGTTCTGCGATATGCTATTTAGTACAAAATGCTATCAAATAGAGGTTATAGCGGTGCTATAGCACTGCTGTGTAGCATAATTTGAATGAACCGTTATTTTCCACAATCAACAACAATGTAGCTATTGCTATGTGTATTATTTGCTATGAAATTTCTTGAATGTTCTATAAATTGTTTGTTGTAGCTAAAGGAGTACGAAGAAAAAATTATGGGCTTAAGCAAAGAAAGAGAGCAATTAACCGACCAGAGAGATGCTGCTATTAAGGAGGCAAATATGTGGCGTACTGAACTGGGAAAAGCTAGAGAGCATGACGTGATCTTAGAAGCAACTGTAGTAAGAGCGGAAGAGAAGGTCAGGGTTGCTGAGGCCAATGCTGAAGCTAGGATAAAGGAAGCTGTACAGAGAGAATCAGTGGCAACAAAAGAGAAGCAGGAACTTCTTGCATATGTTAACATGCTAAAAGCACAACTTCAAAGGTCCGCGTCTGGTTTTTTTATCCCTTGCTTGAAGCTTTGTTAATAACGGTTATCAAAATTGTGAATTGGAATATCGATTTTCGGAATCCCGAATCAAATCTTCTTATGAATCATAAGATCCATTAAGTAAAAACAAGCAACATAGCAAACCTATAAACTAATGTATCATCTACTAATCTGAAAATGATTCAAGATTCAAGTCTTAAATCAAATGATAAAAAAAGTGGCTGGCTATACAAAGTTGACAAAAAACGTGGCAGGCTACACCAAAGGATAGATGGTGATTCATCAGAGTGAATTGGACTCGATCGTAGTGTATCAGGATTTATCATAATGAATCAGGATCGACCACAATGAATCAGGATTCAAGATGAGATTAATGTTCAATATAGATACACTAAAAATTCATATGGATTAGGTTCAATTTTGTATCGAATCGAGATACACATGTATCATAAGATGGAAGTATTATATATAATACTAGAGAATTAAATGGAAACTTCAGATGGTTTGTTTGTCTTTTATGAATTATGAGTTCGTTTTGGTTGAATTTGTATGCCAGCTATGAAATGTGGAGCATCAGAAAAACAAATTTGACATAGCATATTTTTTTTAACTGTTAACAGGCAACACATTGATGCAACTCAAGTTGTTGAGAAGACAGAGTCATGCTCAGATACAAAGCATGTTGATCCCACTGAAGAAAATGTGGATAAAGCATGCCTAAGTGTTTCTAGAGCAAACCCTATCCCTGCAGAGAATGTAGTTCACATGGCAACAGACCAGGTAAACAACATTCAGCCAGTTGGTGACAACGAATGGAGCGATATTCAGGCTACAGAGGCAAGGATAGCCGATGTAAGGGAAGTCGCAGCACCAGAAACTGATGGAAGCAGCTTGGATATTCCAGTGGTTAGCCAGCCAGGTATCAATCATCACCACGAACAAGGATCAAACTCTTTCCATCAGCCCTGA

Protein sequence

>MS.gene48037.t1

MSQRAVENTENSLEKIKRQLASASGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKLRRNEPTVKGTILFDANSTITVSPVNFNGLPKYDGCCIYIGTPQKKDYFLCAETPGAARAWVSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTASECSKEIEAAMQISLRNALGMMPNRTTDGPMDDLTIMKETLRVKDEELQNLARDLRARDSTITEIADKLSETAEAAEAAASAAYTMDEQRRIVCAEIERLRKDSEKQQEVYAQKLKEYEEKIMGLSKEREQLTDQRDAAIKEANMWRTELGKAREHDVILEATVVRAEEKVRVAEANAEARIKEAVQRESVATKEKQELLAYVNMLKAQLQRQHIDATQVVEKTESCSDTKHVDPTEENVDKACLSVSRANPIPAENVVHMATDQVNNIQPVGDNEWSDIQATEARIADVREVAAPETDGSSLDIPVVSQPGINHHHEQGSNSFHQP