Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73885.t1 | RHN61833.1 | 96.2 | 291 | 11 | 0 | 1 | 291 | 488 | 778 | 6.40E-153 | 550.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73885.t1 | G7JV08 | 96.2 | 291 | 11 | 0 | 1 | 291 | 474 | 764 | 4.6e-153 | 550.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene73885 | 0.823302 | 1.49E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene73885 | 0.863357 | 2.64E-64 | -1.69E-46 |
| MS.gene04919 | MS.gene73885 | 0.810136 | 1.34E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene73885 | 0.841226 | 5.40E-58 | -1.69E-46 |
| MS.gene049283 | MS.gene73885 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene049343 | MS.gene73885 | 0.805302 | 1.43E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene73885 | 0.828445 | 8.95E-55 | -1.69E-46 |
| MS.gene049411 | MS.gene73885 | 0.87193 | 4.70E-67 | -1.69E-46 |
| MS.gene049499 | MS.gene73885 | 0.822222 | 2.66E-53 | -1.69E-46 |
| MS.gene049680 | MS.gene73885 | 0.872011 | 4.41E-67 | -1.69E-46 |
| MS.gene049983 | MS.gene73885 | 0.829324 | 5.49E-55 | -1.69E-46 |
| MS.gene05029 | MS.gene73885 | 0.812646 | 3.82E-51 | -1.69E-46 |
| MS.gene050352 | MS.gene73885 | 0.816651 | 4.96E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene73885 | 0.820794 | 5.68E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene73885 | 0.860969 | 1.43E-63 | -1.69E-46 |
| MS.gene050752 | MS.gene73885 | 0.839058 | 1.99E-57 | -1.69E-46 |
| MS.gene050838 | MS.gene73885 | 0.818249 | 2.16E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene73885 | 0.840444 | 8.66E-58 | -1.69E-46 |
| MS.gene050955 | MS.gene73885 | 0.845096 | 5.03E-59 | -1.69E-46 |
| MS.gene051003 | MS.gene73885 | 0.881616 | 2.07E-70 | -1.69E-46 |
| MS.gene051019 | MS.gene73885 | 0.80245 | 5.58E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene73885 | 0.80533 | 1.41E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene73885 | 0.87238 | 3.32E-67 | -1.69E-46 |
| MS.gene051343 | MS.gene73885 | 0.83825 | 3.21E-57 | -1.69E-46 |
| MS.gene051363 | MS.gene73885 | 0.84206 | 3.26E-58 | -1.69E-46 |
| MS.gene051365 | MS.gene73885 | 0.838926 | 2.15E-57 | -1.69E-46 |
| MS.gene051699 | MS.gene73885 | 0.812493 | 4.12E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene73885 | 0.82914 | 6.08E-55 | -1.69E-46 |
| MS.gene051902 | MS.gene73885 | 0.837332 | 5.53E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene73885 | 0.86045 | 2.05E-63 | -1.69E-46 |
| MS.gene052072 | MS.gene73885 | 0.842734 | 2.16E-58 | -1.69E-46 |
| MS.gene052307 | MS.gene73885 | 0.808495 | 3.01E-50 | -1.69E-46 |
| MS.gene052335 | MS.gene73885 | 0.817514 | 3.17E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene73885 | 0.822863 | 1.89E-53 | -1.69E-46 |
| MS.gene052479 | MS.gene73885 | 0.803454 | 3.46E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene73885 | 0.820936 | 5.27E-53 | -1.69E-46 |
| MS.gene052518 | MS.gene73885 | 0.844898 | 5.68E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene73885 | 0.824301 | 8.69E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene73885 | 0.824512 | 7.75E-54 | -1.69E-46 |
| MS.gene052793 | MS.gene73885 | 0.807811 | 4.21E-50 | -1.69E-46 |
| MS.gene052889 | MS.gene73885 | 0.800712 | 1.27E-48 | -1.69E-46 |
| MS.gene053058 | MS.gene73885 | 0.824081 | 9.79E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene73885 | 0.815516 | 8.88E-52 | -1.69E-46 |
| MS.gene053146 | MS.gene73885 | 0.802371 | 5.79E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene73885 | 0.829327 | 5.48E-55 | -1.69E-46 |
| MS.gene053272 | MS.gene73885 | -0.824281 | 8.79E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene73885 | 0.816126 | 6.49E-52 | -1.69E-46 |
| MS.gene053879 | MS.gene73885 | 0.805982 | 1.03E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene73885 | 0.819621 | 1.06E-52 | -1.69E-46 |
| MS.gene054004 | MS.gene73885 | 0.85428 | 1.37E-61 | -1.69E-46 |
| MS.gene054005 | MS.gene73885 | 0.813331 | 2.70E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene73885 | 0.839353 | 1.67E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene73885 | 0.842021 | 3.33E-58 | -1.69E-46 |
| MS.gene054413 | MS.gene73885 | 0.809636 | 1.72E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene73885 | 0.815508 | 8.92E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene73885 | 0.836632 | 8.35E-57 | -1.69E-46 |
| MS.gene05469 | MS.gene73885 | 0.815998 | 6.94E-52 | -1.69E-46 |
| MS.gene054709 | MS.gene73885 | 0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene054957 | MS.gene73885 | 0.805065 | 1.60E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene73885 | 0.802213 | 6.24E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene73885 | 0.822456 | 2.35E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene73885 | 0.856685 | 2.72E-62 | -1.69E-46 |
| MS.gene055555 | MS.gene73885 | 0.827884 | 1.22E-54 | -1.69E-46 |
| MS.gene055765 | MS.gene73885 | 0.817995 | 2.47E-52 | -1.69E-46 |
| MS.gene055841 | MS.gene73885 | 0.822576 | 2.20E-53 | -1.69E-46 |
| MS.gene056010 | MS.gene73885 | 0.807203 | 5.67E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene73885 | 0.827609 | 1.42E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene73885 | 0.841591 | 4.33E-58 | -1.69E-46 |
| MS.gene05686 | MS.gene73885 | 0.815851 | 7.48E-52 | -1.69E-46 |
| MS.gene05690 | MS.gene73885 | 0.803146 | 4.01E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene73885 | 0.85168 | 7.58E-61 | -1.69E-46 |
| MS.gene057034 | MS.gene73885 | 0.813513 | 2.46E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene73885 | 0.894884 | 1.62E-75 | -1.69E-46 |
| MS.gene057208 | MS.gene73885 | 0.849164 | 3.85E-60 | -1.69E-46 |
| MS.gene057684 | MS.gene73885 | -0.806541 | 7.82E-50 | -1.69E-46 |
| MS.gene057694 | MS.gene73885 | 0.824487 | 7.86E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene73885 | 0.837363 | 5.43E-57 | -1.69E-46 |
| MS.gene05781 | MS.gene73885 | 0.809648 | 1.71E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene73885 | 0.841817 | 3.77E-58 | -1.69E-46 |
| MS.gene058009 | MS.gene73885 | 0.827622 | 1.41E-54 | -1.69E-46 |
| MS.gene058095 | MS.gene73885 | 0.802183 | 6.33E-49 | -1.69E-46 |
| MS.gene058149 | MS.gene73885 | 0.820372 | 7.10E-53 | -1.69E-46 |
| MS.gene058159 | MS.gene73885 | 0.80525 | 1.46E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene73885 | 0.861917 | 7.32E-64 | -1.69E-46 |
| MS.gene058783 | MS.gene73885 | 0.875945 | 2.06E-68 | -1.69E-46 |
| MS.gene059146 | MS.gene73885 | 0.879107 | 1.63E-69 | -1.69E-46 |
| MS.gene059227 | MS.gene73885 | 0.804229 | 2.39E-49 | -1.69E-46 |
| MS.gene059454 | MS.gene73885 | 0.812165 | 4.86E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene73885 | 0.803907 | 2.79E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene73885 | 0.834344 | 3.17E-56 | -1.69E-46 |
| MS.gene059802 | MS.gene73885 | 0.809464 | 1.87E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene73885 | -0.887289 | 1.63E-72 | -1.69E-46 |
| MS.gene059901 | MS.gene73885 | -0.848433 | 6.15E-60 | -1.69E-46 |
| MS.gene059935 | MS.gene73885 | 0.800666 | 1.29E-48 | -1.69E-46 |
| MS.gene06011 | MS.gene73885 | 0.815581 | 8.59E-52 | -1.69E-46 |
| MS.gene060244 | MS.gene73885 | 0.829336 | 5.45E-55 | -1.69E-46 |
| MS.gene060338 | MS.gene73885 | 0.851739 | 7.29E-61 | -1.69E-46 |
| MS.gene060365 | MS.gene73885 | 0.816335 | 5.83E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene73885 | 0.838987 | 2.07E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene73885 | 0.809083 | 2.25E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene73885 | 0.884871 | 1.32E-71 | -1.69E-46 |
| MS.gene060937 | MS.gene73885 | 0.880442 | 5.47E-70 | -1.69E-46 |
| MS.gene061100 | MS.gene73885 | 0.855145 | 7.68E-62 | -1.69E-46 |
| MS.gene061160 | MS.gene73885 | 0.818674 | 1.73E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene73885 | 0.817126 | 3.88E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73885.t1 | MTR_4g079510 | 96.220 | 291 | 11 | 0 | 1 | 291 | 474 | 764 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73885.t1 | AT3G58110 | 41.751 | 297 | 156 | 9 | 2 | 291 | 465 | 751 | 5.81e-61 | 206 |
| MS.gene73885.t1 | AT3G58110 | 41.751 | 297 | 156 | 9 | 2 | 291 | 495 | 781 | 6.73e-61 | 206 |
| MS.gene73885.t1 | AT2G42370 | 40.977 | 266 | 149 | 5 | 6 | 270 | 443 | 701 | 7.37e-58 | 197 |
Find 69 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGCTTGTTGCTGCCATTT+AGG | 0.183848 | 4.2:-30674130 | None:intergenic |
| CAATATCTTTACAGTTCTTT+TGG | 0.200628 | 4.2:-30674628 | None:intergenic |
| GCAGCTTCTGCTTCACTTAC+TGG | 0.206646 | 4.2:-30674812 | None:intergenic |
| ACGCTTGTTGCTGCCATTTA+GGG | 0.245951 | 4.2:-30674129 | None:intergenic |
| TACAAGGATGTTCCTGGATC+TGG | 0.260398 | 4.2:+30674512 | MS.gene73885:CDS |
| AACTCTCACCATACCCTAAA+TGG | 0.273884 | 4.2:+30674116 | MS.gene73885:CDS |
| CAATCTTTGCTTTATGCAAA+TGG | 0.314284 | 4.2:-30674334 | None:intergenic |
| ATCCTTGGGTGACAAGTTGC+AGG | 0.333008 | 4.2:+30674706 | MS.gene73885:CDS |
| GAAGCAGTGCAGATGCCTTT+TGG | 0.347443 | 4.2:+30673966 | MS.gene73885:CDS |
| ACAAGGATGTTCCTGGATCT+GGG | 0.360505 | 4.2:+30674513 | MS.gene73885:CDS |
| CCACTTTACAAGGATGTTCC+TGG | 0.370467 | 4.2:+30674506 | MS.gene73885:CDS |
| CGACAAAGTAAAACATTTGA+AGG | 0.384383 | 4.2:+30674736 | MS.gene73885:CDS |
| GGAACAGATGCAACATTTCA+TGG | 0.394956 | 4.2:+30674205 | MS.gene73885:CDS |
| GTGTTTCTTTCAAAGCATTT+CGG | 0.425904 | 4.2:-30674436 | None:intergenic |
| TTTCCTCTTCTTCCTTCCTC+AGG | 0.427992 | 4.2:-30674574 | None:intergenic |
| AATCTTTGCTTTATGCAAAT+GGG | 0.444722 | 4.2:-30674333 | None:intergenic |
| AAACACAGATGGAGGTATAT+CGG | 0.445628 | 4.2:+30674369 | MS.gene73885:CDS |
| GATGATCCTCAGATGATTCA+TGG | 0.446049 | 4.2:+30674041 | MS.gene73885:CDS |
| GATGTATGCATCAAAAGATC+AGG | 0.477067 | 4.2:+30674241 | MS.gene73885:CDS |
| ATGCATCCTTCGAAGTCCAT+TGG | 0.486850 | 4.2:-30674182 | None:intergenic |
| GAGCACATTCAACTGATTCA+AGG | 0.492428 | 4.2:-30674790 | None:intergenic |
| GCTACAGAGGAGAGATGAAA+TGG | 0.498927 | 4.2:+30674307 | MS.gene73885:CDS |
| TAGGAGATTTCCTCTCTGCT+AGG | 0.500380 | 4.2:+30674018 | MS.gene73885:CDS |
| GAGTGTGATGGATCTGGAAA+AGG | 0.500881 | 4.2:+30674547 | MS.gene73885:CDS |
| AAAGAACTGTAAAGATATTG+AGG | 0.501243 | 4.2:+30674631 | MS.gene73885:CDS |
| AGCTGATGAGCCACTTTACA+AGG | 0.501688 | 4.2:+30674496 | MS.gene73885:CDS |
| TTGAAGGAAGTGAATGCAAA+AGG | 0.505591 | 4.2:+30674752 | MS.gene73885:CDS |
| TCTAAGCAGAGTTGAATCCT+TGG | 0.512561 | 4.2:+30674691 | MS.gene73885:CDS |
| CAAGGATGTTCCTGGATCTG+GGG | 0.516329 | 4.2:+30674514 | MS.gene73885:CDS |
| TGAGGAAGAGTGGCTTGGCC+AGG | 0.516986 | 4.2:+30674649 | MS.gene73885:CDS |
| CTAAGCAGAGTTGAATCCTT+GGG | 0.518875 | 4.2:+30674692 | MS.gene73885:CDS |
| AACATTTCATGGAGAAAGCT+AGG | 0.521784 | 4.2:+30674216 | MS.gene73885:CDS |
| TGTTGCTGCCATTTAGGGTA+TGG | 0.530516 | 4.2:-30674124 | None:intergenic |
| CATCTTCATGATAGCTCGGT+AGG | 0.547568 | 4.2:+30673999 | MS.gene73885:CDS |
| AAGGATGTTCCTGGATCTGG+GGG | 0.550583 | 4.2:+30674515 | MS.gene73885:CDS |
| CCAGGAACATCCTTGTAAAG+TGG | 0.554028 | 4.2:-30674506 | None:intergenic |
| AGCACATTCAACTGATTCAA+GGG | 0.558315 | 4.2:-30674789 | None:intergenic |
| AGATGAATCCCAGAACCAAA+AGG | 0.567276 | 4.2:-30673981 | None:intergenic |
| TCACAAGAGAGACATTGGTC+TGG | 0.567667 | 4.2:+30674085 | MS.gene73885:CDS |
| TTATATGATGCAAAGCCTTG+TGG | 0.568831 | 4.2:+30674406 | MS.gene73885:CDS |
| AGGAGATTTCCTCTCTGCTA+GGG | 0.569856 | 4.2:+30674019 | MS.gene73885:CDS |
| CCCATGGAGTTCTCAACCAA+TGG | 0.572312 | 4.2:+30674166 | MS.gene73885:CDS |
| GGAAAAGGAACGCCTGAGGA+AGG | 0.573524 | 4.2:+30674562 | MS.gene73885:CDS |
| AATGGACTTCGAAGGATGCA+TGG | 0.578842 | 4.2:+30674184 | MS.gene73885:CDS |
| TCCATTGGTTGAGAACTCCA+TGG | 0.588271 | 4.2:-30674167 | None:intergenic |
| GTAAAGATATTGAGGAAGAG+TGG | 0.590006 | 4.2:+30674639 | MS.gene73885:CDS |
| ACGCCTGAGGAAGGAAGAAG+AGG | 0.591628 | 4.2:+30674571 | MS.gene73885:CDS |
| CCAGACTCATAAAACACAGA+TGG | 0.591662 | 4.2:+30674358 | MS.gene73885:CDS |
| GGAAGAGTGGCTTGGCCAGG+TGG | 0.592271 | 4.2:+30674652 | MS.gene73885:CDS |
| GATTCATCTTCATGATAGCT+CGG | 0.592328 | 4.2:+30673995 | MS.gene73885:CDS |
| GATATTGAGGAAGAGTGGCT+TGG | 0.593907 | 4.2:+30674644 | MS.gene73885:CDS |
| AATGGTCACAAGAGAGACAT+TGG | 0.603182 | 4.2:+30674080 | MS.gene73885:CDS |
| CCATTGGTTGAGAACTCCAT+GGG | 0.610206 | 4.2:-30674166 | None:intergenic |
| GGAGGTATATCGGCTTGAGA+AGG | 0.615618 | 4.2:+30674379 | MS.gene73885:CDS |
| AGCCTGCAACTTGTCACCCA+AGG | 0.621091 | 4.2:-30674708 | None:intergenic |
| TAAAGTGGCTCATCAGCTTG+CGG | 0.624765 | 4.2:-30674491 | None:intergenic |
| GACTCATAAAACACAGATGG+AGG | 0.627538 | 4.2:+30674361 | MS.gene73885:CDS |
| GAAGAGTGGCTTGGCCAGGT+GGG | 0.628195 | 4.2:+30674653 | MS.gene73885:CDS |
| GATCCATCACACTCAAAACA+AGG | 0.636976 | 4.2:-30674538 | None:intergenic |
| TGAGGAAGGAAGAAGAGGAA+AGG | 0.640038 | 4.2:+30674576 | MS.gene73885:CDS |
| TCTCAACCAATGGACTTCGA+AGG | 0.640505 | 4.2:+30674176 | MS.gene73885:CDS |
| ATGATGCAAAGCCTTGTGGA+AGG | 0.642131 | 4.2:+30674410 | MS.gene73885:CDS |
| CATTTCGGTAGCCTTCCACA+AGG | 0.644036 | 4.2:-30674421 | None:intergenic |
| GACGAGCCATGAATCATCTG+AGG | 0.654353 | 4.2:-30674047 | None:intergenic |
| GCACATTCAACTGATTCAAG+GGG | 0.659949 | 4.2:-30674788 | None:intergenic |
| GTTTGAGAAGTGATAGCCCA+TGG | 0.662824 | 4.2:+30674150 | MS.gene73885:CDS |
| GTTCATTCAGTATACCCACC+TGG | 0.671321 | 4.2:-30674667 | None:intergenic |
| ATCTGGAAAAGGAACGCCTG+AGG | 0.684579 | 4.2:+30674558 | MS.gene73885:CDS |
| GAGGATCATCCCTAGCAGAG+AGG | 0.708652 | 4.2:-30674028 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGAACTGTAAAGATATTG+AGG | + | chr4.2:30674631-30674650 | MS.gene73885:CDS | 25.0% |
| ! | AATCTTTGCTTTATGCAAAT+GGG | - | chr4.2:30674336-30674355 | None:intergenic | 25.0% |
| !! | CAATATCTTTACAGTTCTTT+TGG | - | chr4.2:30674631-30674650 | None:intergenic | 25.0% |
| CAATCTTTGCTTTATGCAAA+TGG | - | chr4.2:30674337-30674356 | None:intergenic | 30.0% | |
| CGACAAAGTAAAACATTTGA+AGG | + | chr4.2:30674736-30674755 | MS.gene73885:CDS | 30.0% | |
| ! | GTGTTTCTTTCAAAGCATTT+CGG | - | chr4.2:30674439-30674458 | None:intergenic | 30.0% |
| AACATTTCATGGAGAAAGCT+AGG | + | chr4.2:30674216-30674235 | MS.gene73885:CDS | 35.0% | |
| GATGTATGCATCAAAAGATC+AGG | + | chr4.2:30674241-30674260 | MS.gene73885:CDS | 35.0% | |
| GATTCATCTTCATGATAGCT+CGG | + | chr4.2:30673995-30674014 | MS.gene73885:CDS | 35.0% | |
| GTAAAGATATTGAGGAAGAG+TGG | + | chr4.2:30674639-30674658 | MS.gene73885:CDS | 35.0% | |
| TTATATGATGCAAAGCCTTG+TGG | + | chr4.2:30674406-30674425 | MS.gene73885:CDS | 35.0% | |
| TTGAAGGAAGTGAATGCAAA+AGG | + | chr4.2:30674752-30674771 | MS.gene73885:CDS | 35.0% | |
| ! | AAACACAGATGGAGGTATAT+CGG | + | chr4.2:30674369-30674388 | MS.gene73885:CDS | 35.0% |
| ! | AGCACATTCAACTGATTCAA+GGG | - | chr4.2:30674792-30674811 | None:intergenic | 35.0% |
| ! | TTTTGCTTAATGAGCTACAG+AGG | + | chr4.2:30674294-30674313 | MS.gene73885:CDS | 35.0% |
| AACTCTCACCATACCCTAAA+TGG | + | chr4.2:30674116-30674135 | MS.gene73885:CDS | 40.0% | |
| AATGGTCACAAGAGAGACAT+TGG | + | chr4.2:30674080-30674099 | MS.gene73885:CDS | 40.0% | |
| AGATGAATCCCAGAACCAAA+AGG | - | chr4.2:30673984-30674003 | None:intergenic | 40.0% | |
| CCAGACTCATAAAACACAGA+TGG | + | chr4.2:30674358-30674377 | MS.gene73885:CDS | 40.0% | |
| CTAAGCAGAGTTGAATCCTT+GGG | + | chr4.2:30674692-30674711 | MS.gene73885:CDS | 40.0% | |
| GACTCATAAAACACAGATGG+AGG | + | chr4.2:30674361-30674380 | MS.gene73885:CDS | 40.0% | |
| GATCCATCACACTCAAAACA+AGG | - | chr4.2:30674541-30674560 | None:intergenic | 40.0% | |
| GATGATCCTCAGATGATTCA+TGG | + | chr4.2:30674041-30674060 | MS.gene73885:CDS | 40.0% | |
| GGAACAGATGCAACATTTCA+TGG | + | chr4.2:30674205-30674224 | MS.gene73885:CDS | 40.0% | |
| TCTAAGCAGAGTTGAATCCT+TGG | + | chr4.2:30674691-30674710 | MS.gene73885:CDS | 40.0% | |
| ! | CCATCTGTGTTTTATGAGTC+TGG | - | chr4.2:30674361-30674380 | None:intergenic | 40.0% |
| ! | GAGCACATTCAACTGATTCA+AGG | - | chr4.2:30674793-30674812 | None:intergenic | 40.0% |
| ! | GCACATTCAACTGATTCAAG+GGG | - | chr4.2:30674791-30674810 | None:intergenic | 40.0% |
| !!! | ATTCATGGCTCGTCACTTTT+TGG | + | chr4.2:30674056-30674075 | MS.gene73885:CDS | 40.0% |
| !!! | TGTTTTGAGTGTGATGGATC+TGG | + | chr4.2:30674541-30674560 | MS.gene73885:CDS | 40.0% |
| ACAAGGATGTTCCTGGATCT+GGG | + | chr4.2:30674513-30674532 | MS.gene73885:CDS | 45.0% | |
| AGGAGATTTCCTCTCTGCTA+GGG | + | chr4.2:30674019-30674038 | MS.gene73885:CDS | 45.0% | |
| ATGCATCCTTCGAAGTCCAT+TGG | - | chr4.2:30674185-30674204 | None:intergenic | 45.0% | |
| CATCTTCATGATAGCTCGGT+AGG | + | chr4.2:30673999-30674018 | MS.gene73885:CDS | 45.0% | |
| CCACTTTACAAGGATGTTCC+TGG | + | chr4.2:30674506-30674525 | MS.gene73885:CDS | 45.0% | |
| CCAGGAACATCCTTGTAAAG+TGG | - | chr4.2:30674509-30674528 | None:intergenic | 45.0% | |
| GATATTGAGGAAGAGTGGCT+TGG | + | chr4.2:30674644-30674663 | MS.gene73885:CDS | 45.0% | |
| GCTACAGAGGAGAGATGAAA+TGG | + | chr4.2:30674307-30674326 | MS.gene73885:CDS | 45.0% | |
| GTTCATTCAGTATACCCACC+TGG | - | chr4.2:30674670-30674689 | None:intergenic | 45.0% | |
| GTTTGAGAAGTGATAGCCCA+TGG | + | chr4.2:30674150-30674169 | MS.gene73885:CDS | 45.0% | |
| TAAAGTGGCTCATCAGCTTG+CGG | - | chr4.2:30674494-30674513 | None:intergenic | 45.0% | |
| TACAAGGATGTTCCTGGATC+TGG | + | chr4.2:30674512-30674531 | MS.gene73885:CDS | 45.0% | |
| TAGGAGATTTCCTCTCTGCT+AGG | + | chr4.2:30674018-30674037 | MS.gene73885:CDS | 45.0% | |
| TCACAAGAGAGACATTGGTC+TGG | + | chr4.2:30674085-30674104 | MS.gene73885:CDS | 45.0% | |
| TGAGGAAGGAAGAAGAGGAA+AGG | + | chr4.2:30674576-30674595 | MS.gene73885:CDS | 45.0% | |
| TTTCCTCTTCTTCCTTCCTC+AGG | - | chr4.2:30674577-30674596 | None:intergenic | 45.0% | |
| ! | AACGCTTGTTGCTGCCATTT+AGG | - | chr4.2:30674133-30674152 | None:intergenic | 45.0% |
| ! | AATGGACTTCGAAGGATGCA+TGG | + | chr4.2:30674184-30674203 | MS.gene73885:CDS | 45.0% |
| ! | ACGCTTGTTGCTGCCATTTA+GGG | - | chr4.2:30674132-30674151 | None:intergenic | 45.0% |
| ! | AGCTGATGAGCCACTTTACA+AGG | + | chr4.2:30674496-30674515 | MS.gene73885:CDS | 45.0% |
| ! | ATGATGCAAAGCCTTGTGGA+AGG | + | chr4.2:30674410-30674429 | MS.gene73885:CDS | 45.0% |
| ! | CCATTGGTTGAGAACTCCAT+GGG | - | chr4.2:30674169-30674188 | None:intergenic | 45.0% |
| ! | TCCATTGGTTGAGAACTCCA+TGG | - | chr4.2:30674170-30674189 | None:intergenic | 45.0% |
| ! | TCTCAACCAATGGACTTCGA+AGG | + | chr4.2:30674176-30674195 | MS.gene73885:CDS | 45.0% |
| ! | TGTTGCTGCCATTTAGGGTA+TGG | - | chr4.2:30674127-30674146 | None:intergenic | 45.0% |
| !! | GAGTGTGATGGATCTGGAAA+AGG | + | chr4.2:30674547-30674566 | MS.gene73885:CDS | 45.0% |
| !!! | GGCTCGTCACTTTTTGGTAA+TGG | + | chr4.2:30674062-30674081 | MS.gene73885:CDS | 45.0% |
| !!! | TGCAGATGCCTTTTGGTTCT+GGG | + | chr4.2:30673973-30673992 | MS.gene73885:CDS | 45.0% |
| AAGGATGTTCCTGGATCTGG+GGG | + | chr4.2:30674515-30674534 | MS.gene73885:CDS | 50.0% | |
| ATCCTTGGGTGACAAGTTGC+AGG | + | chr4.2:30674706-30674725 | MS.gene73885:CDS | 50.0% | |
| ATCTGGAAAAGGAACGCCTG+AGG | + | chr4.2:30674558-30674577 | MS.gene73885:CDS | 50.0% | |
| CAAGGATGTTCCTGGATCTG+GGG | + | chr4.2:30674514-30674533 | MS.gene73885:CDS | 50.0% | |
| CATTTCGGTAGCCTTCCACA+AGG | - | chr4.2:30674424-30674443 | None:intergenic | 50.0% | |
| CCCATGGAGTTCTCAACCAA+TGG | + | chr4.2:30674166-30674185 | MS.gene73885:CDS | 50.0% | |
| GACGAGCCATGAATCATCTG+AGG | - | chr4.2:30674050-30674069 | None:intergenic | 50.0% | |
| GCAGCTTCTGCTTCACTTAC+TGG | - | chr4.2:30674815-30674834 | None:intergenic | 50.0% | |
| ! | GAAGCAGTGCAGATGCCTTT+TGG | + | chr4.2:30673966-30673985 | MS.gene73885:CDS | 50.0% |
| !! | GGAGGTATATCGGCTTGAGA+AGG | + | chr4.2:30674379-30674398 | MS.gene73885:CDS | 50.0% |
| !!! | GGGCCTTGTTTTGAGTGTGA+TGG | + | chr4.2:30674535-30674554 | MS.gene73885:CDS | 50.0% |
| !!! | GTGCAGATGCCTTTTGGTTC+TGG | + | chr4.2:30673972-30673991 | MS.gene73885:CDS | 50.0% |
| AAAACAAGGCCCCCAGATCC+AGG | - | chr4.2:30674527-30674546 | None:intergenic | 55.0% | |
| ACGCCTGAGGAAGGAAGAAG+AGG | + | chr4.2:30674571-30674590 | MS.gene73885:CDS | 55.0% | |
| AGCCTGCAACTTGTCACCCA+AGG | - | chr4.2:30674711-30674730 | None:intergenic | 55.0% | |
| GAGGATCATCCCTAGCAGAG+AGG | - | chr4.2:30674031-30674050 | None:intergenic | 55.0% | |
| GGAAAAGGAACGCCTGAGGA+AGG | + | chr4.2:30674562-30674581 | MS.gene73885:CDS | 55.0% | |
| ! | GAAGAGTGGCTTGGCCAGGT+GGG | + | chr4.2:30674653-30674672 | MS.gene73885:CDS | 60.0% |
| ! | TGAGGAAGAGTGGCTTGGCC+AGG | + | chr4.2:30674649-30674668 | MS.gene73885:CDS | 60.0% |
| ! | GGAAGAGTGGCTTGGCCAGG+TGG | + | chr4.2:30674652-30674671 | MS.gene73885:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 30673963 | 30674838 | 30673963 | ID=MS.gene73885 |
| chr4.2 | mRNA | 30673963 | 30674838 | 30673963 | ID=MS.gene73885.t1;Parent=MS.gene73885 |
| chr4.2 | exon | 30673963 | 30674838 | 30673963 | ID=MS.gene73885.t1.exon1;Parent=MS.gene73885.t1 |
| chr4.2 | CDS | 30673963 | 30674838 | 30673963 | ID=cds.MS.gene73885.t1;Parent=MS.gene73885.t1 |
| Gene Sequence |
| Protein sequence |
