AlfalfaGEDB | MS.gene85654

M. sativa cultivar XinJiangDaYe / MS.gene85654

KEGG: K25656
GO: GO:0003674 GO:0003824 GO:0003913 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360
PFAM: PF00875.21 PF03441.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85654.t1	XP_003603523.2	96.7	549	18	0	1	549	47	595	0.00E+00	1114.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85654.t1	Q38JU2	69.3	534	163	1	13	545	40	573	1.8e-229	796.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85654.t1	G7JCC1	96.7	549	18	0	1	549	47	595	0.0e+00	1114.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene85654	0.806824	6.82E-50	-1.69E-46
MS.gene049171	MS.gene85654	0.808975	2.38E-50	-1.69E-46
MS.gene049217	MS.gene85654	0.821275	4.40E-53	-1.69E-46
MS.gene049222	MS.gene85654	0.817456	3.27E-52	-1.69E-46
MS.gene049285	MS.gene85654	0.808743	2.67E-50	-1.69E-46
MS.gene049356	MS.gene85654	0.801028	1.09E-48	-1.69E-46
MS.gene049369	MS.gene85654	0.841077	5.91E-58	-1.69E-46
MS.gene049427	MS.gene85654	0.825916	3.61E-54	-1.69E-46
MS.gene049609	MS.gene85654	0.834776	2.47E-56	-1.69E-46
MS.gene049633	MS.gene85654	0.850284	1.88E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85654.t1	MTR_3g108700	96.721	549	18	0	1	549	47	595	0.0	1117
MS.gene85654.t1	MTR_1g088420	34.367	387	208	10	5	366	74	439	3.52e-60	206
MS.gene85654.t1	MTR_4g011370	28.392	479	303	13	37	500	1	454	5.65e-40	152
MS.gene85654.t1	MTR_4g011370	28.452	478	302	13	38	500	2	454	5.73e-40	152
MS.gene85654.t1	MTR_4g011370	26.625	477	288	13	38	500	2	430	5.98e-32	129
MS.gene85654.t1	MTR_1g043190	27.254	477	291	15	52	508	4	444	7.55e-28	118
MS.gene85654.t1	MTR_1g076190	28.631	482	276	19	53	508	7	446	3.56e-25	110
MS.gene85654.t1	MTR_1g076190	28.631	482	276	19	53	508	7	446	4.34e-25	110
MS.gene85654.t1	MTR_5g063920	41.538	130	75	1	380	508	155	284	1.14e-17	86.7
MS.gene85654.t1	MTR_5g063920	41.538	130	75	1	380	508	319	448	1.29e-17	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85654.t1	AT5G24850	69.720	535	143	4	17	547	48	567	0.0	777
MS.gene85654.t1	AT2G47590	37.758	339	171	10	55	373	120	438	3.70e-59	203
MS.gene85654.t1	AT3G15620	30.185	487	302	14	31	501	6	470	4.11e-45	167
MS.gene85654.t1	AT3G15620	30.493	446	272	14	31	460	6	429	6.05e-39	148
MS.gene85654.t1	AT1G04400	27.869	488	271	21	53	506	8	448	2.66e-25	110
MS.gene85654.t1	AT1G04400	27.869	488	271	21	53	506	8	448	2.66e-25	110
MS.gene85654.t1	AT4G08920	40.769	130	76	1	380	508	324	453	6.08e-19	90.9
MS.gene85654.t1	AT4G25290	30.374	214	106	10	51	257	36	213	2.02e-13	73.6

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Find 142 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACTGTAATTTGGGG+TGG	0.651990	3.3:+88850235	None:intergenic
AACAAGGGGATGAAATTTGT+GGG	0.551545	3.3:-88849495	MS.gene85654:CDS
AACACCAAGAGGAGTGGTAA+AGG	0.541108	3.3:-88851530	MS.gene85654:CDS
AAGCAAATAGTTCTACCTAC+TGG	0.538920	3.3:-88848760	MS.gene85654:intron
AAGCTTCCGGATGCAAGCCA+TGG	0.569250	3.3:+88848921	None:intergenic
AAGGGGATGAAATTTGTGGG+GGG	0.704567	3.3:-88849492	MS.gene85654:CDS
AAGGTGAATATGTTGCATAC+TGG	0.650078	3.3:-88847077	MS.gene85654:CDS
AAGTCACTTGGTGCAAGAAG+AGG	0.607529	3.3:-88846940	MS.gene85654:CDS
AAGTGTACCTTTGGAATGTT+TGG	0.395594	3.3:+88851558	None:intergenic
AATAATGGGGACAAGTCACT+TGG	0.587812	3.3:-88846952	MS.gene85654:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCCTGTGAAAATAAAGA+CGG	+	chr3.3:88850144-88850163	None:intergenic	30.0%
AAAGAAAAAAGGAACTTTCC+TGG	-	chr3.3:88851526-88851545	MS.gene85654:CDS	30.0%
AACACACAATCTGTCAAAAA+AGG	+	chr3.3:88850851-88850870	None:intergenic	30.0%
AATTATGGAAACTGGACTTA+TGG	-	chr3.3:88850957-88850976	MS.gene85654:intron	30.0%
ACAATTTCTCCTTGAATGTT+TGG	-	chr3.3:88847939-88847958	MS.gene85654:intron	30.0%
ACACACAATCTGTCAAAAAA+GGG	+	chr3.3:88850850-88850869	None:intergenic	30.0%
ACACTAACACATTAGATTGA+AGG	+	chr3.3:88847796-88847815	None:intergenic	30.0%
ACATGTGTAGGATTTACTAA+AGG	-	chr3.3:88849556-88849575	MS.gene85654:intron	30.0%
ACCTTCATGTTTACTCAAAA+AGG	+	chr3.3:88849325-88849344	None:intergenic	30.0%
ACGACTAGTAGACATAATAA+TGG	-	chr3.3:88851589-88851608	MS.gene85654:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	88846900	88851678	88846900	ID=MS.gene85654
chr3.3	mRNA	88846900	88851678	88846900	ID=MS.gene85654.t1;Parent=MS.gene85654
chr3.3	exon	88851375	88851678	88851375	ID=MS.gene85654.t1.exon1;Parent=MS.gene85654.t1
chr3.3	CDS	88851375	88851678	88851375	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88850510	88850649	88850510	ID=MS.gene85654.t1.exon2;Parent=MS.gene85654.t1
chr3.3	CDS	88850510	88850649	88850510	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88850155	88850379	88850155	ID=MS.gene85654.t1.exon3;Parent=MS.gene85654.t1
chr3.3	CDS	88850155	88850379	88850155	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88849636	88849761	88849636	ID=MS.gene85654.t1.exon4;Parent=MS.gene85654.t1
chr3.3	CDS	88849636	88849761	88849636	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88849446	88849520	88849446	ID=MS.gene85654.t1.exon5;Parent=MS.gene85654.t1
chr3.3	CDS	88849446	88849520	88849446	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88848896	88849012	88848896	ID=MS.gene85654.t1.exon6;Parent=MS.gene85654.t1
chr3.3	CDS	88848896	88849012	88848896	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88848761	88848807	88848761	ID=MS.gene85654.t1.exon7;Parent=MS.gene85654.t1
chr3.3	CDS	88848761	88848807	88848761	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88848343	88848419	88848343	ID=MS.gene85654.t1.exon8;Parent=MS.gene85654.t1
chr3.3	CDS	88848343	88848419	88848343	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88848079	88848154	88848079	ID=MS.gene85654.t1.exon9;Parent=MS.gene85654.t1
chr3.3	CDS	88848079	88848154	88848079	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88847843	88847912	88847843	ID=MS.gene85654.t1.exon10;Parent=MS.gene85654.t1
chr3.3	CDS	88847843	88847912	88847843	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88847594	88847717	88847594	ID=MS.gene85654.t1.exon11;Parent=MS.gene85654.t1
chr3.3	CDS	88847594	88847717	88847594	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88847237	88847286	88847237	ID=MS.gene85654.t1.exon12;Parent=MS.gene85654.t1
chr3.3	CDS	88847237	88847286	88847237	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1
chr3.3	exon	88846900	88847118	88846900	ID=MS.gene85654.t1.exon13;Parent=MS.gene85654.t1
chr3.3	CDS	88846900	88847118	88846900	ID=cds.MS.gene85654.t1;Parent=MS.gene85654.t1

Gene Sequence

>MS.gene85654

ATGAACATGTGCACCACCAAATCCGAACCCTCAGCATCTTCTTCGTCAATGCAGCACGTGCCAGAGCTAGACTCTAACGAAATGGAAAGTGTGGCAAACCAAACATTCCAAAGGTACACTTCCAATAACACCAAGAGGAGTGGTAAAGGTACGGCAATCGTGTGGTTTAGAAACGATCTCAGAGTTTTGGATAATGAAACTCTCTACAAGGCTTGGCTTTCTTCTCAAACTCTCTTGCCTGTTTATTGTATTGATCCTCGACTATTTGCAACCACTTACCATTTCGGATTTCCAAAAACCGGAGGTATATTCTTGTTTCATTACTGTCTTTTATCTCTTTTCTTCAATGACATTGAAACTGAGATGTCCACACCGGGAATAATTTCAAAAATAGAAGTGACTGAAACTTTATTCGGTAATTGTAGCAGACGACGCATAAGTTAACCGATACTGGATAGACTTATATCAGATAGCGGATAAGCTAGAGATCGAATTTCAAGTGTTAGCCTGTTAGGTAAATTTAAATGTTGAACTAACTTAAATATTTAAAATGATATAAAAATGTGTTTTTAATTAATGTTTAATTTTTTTCCAATTAAAATAATTAGGGTAAAAATGAGAGGCAAAATTATACGTTATAAGCTACTATTAGTTAAAACACTGCTCGAAGTAGCATATCAAAAAAATACTATAAGCTAGTGAAAAATGCTTTATGCTCGTAGAAAGGTTGTTACCAAATAGCTTTACTTTGATCGCACAAACTTGTACACTAAGCTAGCGGTTTGTCCTTGCTAAACCGAGCCTGAATGTAACATTTGTCAGCGTTGTTTCATAATTTTTTTTTTTTTTGTGATATGTTATAGTTTGACGCATGTTGAACACCAAATAATACACCTTCAATCTAATGTGTTAGTGTTTTGTAGCTTTTATTAACTTCTTTGTTTGTTTTGTTGGTGCTATAGATTTGAATTTGATTAATGCGATAGCAATATAATATAGCATCACCTTTATGAACATGACCTTGTGCAGCATTGAGAACACAATTTCTCCTTGAATGTTTGGATGACTTGAGGAAGAATCTAATGAAACGGGGACTTAATTTGCTTATTCAACATGGCAAACCTGAAGATATTCTTCCTTCTCTAGTTAAAGCTTATGGAGCTCATACAGTTAGTATTTGAGTATTACTTTTTTAATTATGTTTAATAAGCTAGTTTAGATTGATGGAATTTCCAAATTTTATGATAATTGATGCATCTTTAGGGTTGGTTGGTTCATTGGTGAATGTGAAATTGTCAGGTTTATGCACAGAAAGAAACTTGTAGCGAAGAGCTGGATGTTGAAAGGTCTCTCAACAAATGTCTTCAACAAGTGGTAGTACCATCTGACGGATCCGCTGGGGCGGCATCAGCTTCTAACAGCCACCCCAAATTACAGTTTGTTTGGGGCACCACTATGTACCACCGTGACGATCTTCCTTTTGATGTCACTTGTTTGCCAGATGTTTATACTCAATTTCGTAAGGCATGGTATTTCAATTGACATGTGTGTTTAGATTTATATGGATTTATTTGGATTAACTTATTTAAGCTTATCTACGGACATAAGCACTTGTAAGACTGTTTGAGAGAACTTATGAGAACACCTTGTAAGACGTCCATACTTGATTTTATCTTATTTCCATAAGCTCTCCAGGATAGCTTATGAAAACAAGCCATAGCTTATGTGAAAACAGTTTAACTACATTTTTGTTTATATAATTAGTTTATACATAAGTACTTATATTATTTTTTTTGACAAGACATAAGTACTTAAGTACTTATATGATGAGCGCTTATACTATAAGCACTTAGTTAAGTTGTCCACCGAAATAGGAAATGGCTTTTGCTGCTACTCATACTGCTACTGAATATGCAGACTGTTGAAGCGAAATGTGCCGTGCGCTCATGCATCAAACTGCCAACATCACTTGGACCACCTCCCCCAATTGAGGATTGGGGATGTCTTCCTTCATTGGAGCTGCTGGGACTTTCCTCACAGAATGTAGGTTTTGCCATAAGTATACTTGTGGATATCCATGCAAGAGACTCTAGTCCTTTGAACTCAACAATGAAAAAGTAATGACTTTCGCTTTTCTGTTTGCTTCCTCTTGATGTAGGTTAACAAGGGGATGAAATTTGTGGGGGGTGAAACTGCCGCATTGAGCAGAATATATGAATACTTTTGGAAGAAGGTCAGAGGTTACACTTATCTACATTTTTTTAACTATAAATGTTATGTTGGAATTAATGTTAGTCATGATGGGAGTAGGGATGGAAACTTGAACTCCTTATCTCCAAATGAAAATGTAGATTTAATTTATGTCATTCTGCATCTGTCTATTCTCCGAATAATGAGTTAATTTAGGAGTAATATTTTTTCCCCTTTTTGAGTAAACATGAAGGTTCAAGAGTTATCACTGATAGGGAACAGTCGTCTATACAACTGCATACAGAATGGAAGGGAATTATTTAATTGTGTGCAACATAAAATAGGAAAAAGGGTCAAACGAAAATATGTTCACTGGTGGCTCCGGGACTTAATTAAGATATTCAAGATCTAAAAATATAGTGTGGTCGAAACATTGTTTAGTCATCTAACTCATTCTTAAGCTTGTACATGTGTAGGATTTACTAAAGGTATATAAAGAGACCCGAAATGGGATGTTAGGGCCTCATTATTCTACTAAATTCTCGCCATGGCTTGCATCCGGAAGCTTGTCTCCTCGTCTCATACACGAAGAGGTTAAAGTTGACAACAGATTCTGATTTGTTTATTACATGATATTGAAAAACTAGACTCCTTTGATAAAGTATTGTCTGTTCATCATAGGTGAAGAGATATGAGAATGAAAGACAAGCAAATAGTTCTACCTACTGGTAACACTTCGTTTTCTTATTATTGTAGATCTATATCATATTTATTGATAGAATTCTCTTATTTGCACTTTTGTAGCTATTTCTGAATAATTCACTTATCTGTCAACTTGAAATTTCGCACACTTGCTTTAACTCCATCTAGAAAAGGCTAGTGCGAAATTTAGTGACAAAGAAAGGGTAATGCTTAAGGAAAGAAAAACTAACAGGAGAAAAACCAAGCTATTCATTCTTTAATTCTTCATGAAAGTTCAGTAATAGTAGACAGTTAAATAATTACACGGTTGACATCCTACATCTTCTTGTAACGCATTCTTCTTCTGAATCCGTCTTTATTTTCACAGGGTTTTGTTCGAGTTGCTATGGAGGGATTACTTTAGGTTTCTATCAGTCAAATATGGAAATTCACTTTTCCATATAGGTATGGGTTGTTCAAAGTCTTTGATGCCTCTGGCGATTTATCGGGTCATGGATTAAAACTTCTGCTGGTTTAATATGGCGGTGTTATTCATAGTTGTGGAGTGCAAGTGTGTTGATGCATCTCCATAGAACCTTTTTGTTATAATTAATTTATCAGATTGCTTATGTGTAGTCTTTATTTCTTTGTAGGTGGACCTAGAAATGTTCAGAAAAATTGGAGCCAAGACAAAAAATTATTTGAATCCTGGAGAGATGGTTGTACAGGGTTAGTTTCTATCACATCATTATACAATTTTCTTGTTTGTTTCAATACAATACTATTTCTTGATATTATTTTTGTTCTTCTAGAATAGAACTCAAACCTGTAGTTTTTTCTTTTAGCGAACTCAAACCTGTATTGACTTTTTCTTCACTATGTAATACACCTTCAGGTATCCTCTGATAGATGCAAACATGAAAGAATTATCCACTACAGGATTTATGTCAAACCGAGGACGGCAGGTGAACCAAAGTACATTAATGTGTTTCTACAGTATAGTAATTGCTAGGAATTGATACATTGAACTAACGTGAATTTGCACACACCTTTTGTAACCGGAACATGAAAGATTACCCTTTTTTGACAGATTGTGTGTTCCTTCCTAGTTCGTGATATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGTAAATATTTGGAAGTATATGTAACACTTTCTGTAGTAATTCAAATGAAGTCTATTATTTCCACATTTCTTTCTGTTAATAAAAATCCTTGTAGATTTTTTAATATGTCATGCTAACATTATTATGTTGTCCATAAATTCTTTAAAGTAATTCAAATGAAGTCTATTATTTCCACATTTCTTTCTGTTAATAAAAATCCTTGTAGATTTTTTAATATGTCATGCCAACATTATTATGTTGTCCATAAATTCTTTAAACAATGAAAGTTACACTCCATACTCTCTTACTTTTTCTTCTTCTGAATCAGGAGTCGGGAATGATCCTAGAGAAGACCGATATTTCAGCATACCAAAACAAGTAAGTGTCTATGAGAAGATTCACAATTTACTTTGAAATATGGACTTGAAACAGATATAATATTCAGTAAATTTTTAAATTTGGTTCTGATGTGGAACCATTATATACTTGTTGTCAGGCACAAACATATGACCCAGAAGGTGAATATGTTGCATACTGGTTGCCACAGTTAAGAGCAATCTCAAAAGAAAAAAGGAACTTTCCTGGTAATTTATACATTCGTCAAATTGTGCCTCTCAAGTTTGGAACGACTAGTAGACATAATAATGGGGACAAGTCACTTGGTGCAAGAAGAGGTGATGATAGACGAAATGAAAGAAGATGGAACAGGAGATAA

Protein sequence

>MS.gene85654.t1

MNMCTTKSEPSASSSSMQHVPELDSNEMESVANQTFQRYTSNNTKRSGKGTAIVWFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHFGFPKTGALRTQFLLECLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKETCSEELDVERSLNKCLQQVVVPSDGSAGAASASNSHPKLQFVWGTTMYHRDDLPFDVTCLPDVYTQFRKTVEAKCAVRSCIKLPTSLGPPPPIEDWGCLPSLELLGLSSQNVNKGMKFVGGETAALSRIYEYFWKKDLLKVYKETRNGMLGPHYSTKFSPWLASGSLSPRLIHEEVKRYENERQANSSTYWVLFELLWRDYFRFLSVKYGNSLFHIGGPRNVQKNWSQDKKLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRAISKEKRNFPGNLYIRQIVPLKFGTTSRHNNGDKSLGARRGDDRRNERRWNRR