AlfalfaGEDB | MS.gene071758

M. sativa cultivar XinJiangDaYe / MS.gene071758

KEGG: -
GO: GO:0006629 GO:0008150 GO:0008152 GO:0044238 GO:0071704
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071758.t1	XP_003604658.1	94.6	279	6	1	1	270	162	440	7.50E-156	559.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071758.t1	P48620	82.7	278	39	1	1	269	170	447	4.9e-140	498.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071758.t1	G7JN29	94.6	279	6	1	1	270	162	440	5.4e-156	559.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene071758	0.843831	1.10E-58	-1.69E-46
MS.gene049217	MS.gene071758	0.819464	1.15E-52	-1.69E-46
MS.gene049236	MS.gene071758	-0.82601	3.43E-54	-1.69E-46
MS.gene049351	MS.gene071758	0.824728	6.90E-54	-1.69E-46
MS.gene049356	MS.gene071758	0.840268	9.63E-58	-1.69E-46
MS.gene049369	MS.gene071758	0.833891	4.11E-56	-1.69E-46
MS.gene049396	MS.gene071758	0.833831	4.25E-56	-1.69E-46
MS.gene049427	MS.gene071758	0.827186	1.80E-54	-1.69E-46
MS.gene049609	MS.gene071758	0.860415	2.10E-63	-1.69E-46
MS.gene049661	MS.gene071758	0.803055	4.18E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 60 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATACCATCCATGATA+TGG	0.377797	4.4:-84841375	None:intergenic
AAATCTCCAAGGAGGTGAAA+TGG	0.440919	4.4:-84843684	None:intergenic
AACAGTATGTTGGACAGCTA+TGG	0.530932	4.4:+84842315	MS.gene071758:CDS
AAGTGAGAACCACTCTTCCC+AGG	0.513601	4.4:-84842238	None:intergenic
AAGTGGTAGTGTGGGATTTG+AGG	0.405657	4.4:-84842955	None:intergenic
AATAACATCCATCATGACAT+TGG	0.543696	4.4:+84842907	MS.gene071758:CDS
ACAACTCTCGATCGTGACTA+TGG	0.378968	4.4:+84842877	MS.gene071758:CDS
ACCATCCATGATATGGTACT+AGG	0.523521	4.4:-84841368	None:intergenic
ACCATGGTAATTTGTCTTCA+TGG	0.346135	4.4:-84842563	None:intergenic
AGAACACATCATCAAAACCA+TGG	0.681922	4.4:+84841514	MS.gene071758:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAGTGGCCAATTCA+TGG	-	chr4.4:84842443-84842462	None:intergenic	30.0%
AAAACATACCATCCATGATA+TGG	-	chr4.4:84841378-84841397	None:intergenic	30.0%
AACAGTGAATATAAGCTTAC+CGG	-	chr4.4:84841567-84841586	None:intergenic	30.0%
AATAACATCCATCATGACAT+TGG	+	chr4.4:84842907-84842926	MS.gene071758:CDS	30.0%
ACCACTAAATCAAGATTAGA+CGG	+	chr4.4:84843397-84843416	MS.gene071758:intron	30.0%
AGCAAAACATGTTCAAACTA+TGG	-	chr4.4:84841990-84842009	None:intergenic	30.0%
CATGTGAAAATGATGAATCT+TGG	+	chr4.4:84841538-84841557	MS.gene071758:intron	30.0%
CCAAAAACAGAGTTGAAATA+TGG	-	chr4.4:84843425-84843444	None:intergenic	30.0%
GCTCTTCTACATCAAAATAA+TGG	+	chr4.4:84843787-84843806	MS.gene071758:CDS	30.0%
GTTAGGTATTACAACTTACA+AGG	-	chr4.4:84841960-84841979	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	84841299	84843806	84841299	ID=MS.gene071758
chr4.4	mRNA	84841299	84843806	84841299	ID=MS.gene071758.t1;Parent=MS.gene071758
chr4.4	exon	84841299	84841388	84841299	ID=MS.gene071758.t1.exon1;Parent=MS.gene071758.t1
chr4.4	CDS	84841299	84841388	84841299	ID=cds.MS.gene071758.t1;Parent=MS.gene071758.t1
chr4.4	exon	84841501	84841540	84841501	ID=MS.gene071758.t1.exon2;Parent=MS.gene071758.t1
chr4.4	CDS	84841501	84841540	84841501	ID=cds.MS.gene071758.t1;Parent=MS.gene071758.t1
chr4.4	exon	84841868	84841960	84841868	ID=MS.gene071758.t1.exon3;Parent=MS.gene071758.t1
chr4.4	CDS	84841868	84841960	84841868	ID=cds.MS.gene071758.t1;Parent=MS.gene071758.t1
chr4.4	exon	84842226	84842411	84842226	ID=MS.gene071758.t1.exon4;Parent=MS.gene071758.t1
chr4.4	CDS	84842226	84842411	84842226	ID=cds.MS.gene071758.t1;Parent=MS.gene071758.t1
chr4.4	exon	84842516	84842596	84842516	ID=MS.gene071758.t1.exon5;Parent=MS.gene071758.t1
chr4.4	CDS	84842516	84842596	84842516	ID=cds.MS.gene071758.t1;Parent=MS.gene071758.t1
chr4.4	exon	84842850	84842987	84842850	ID=MS.gene071758.t1.exon6;Parent=MS.gene071758.t1
chr4.4	CDS	84842850	84842987	84842850	ID=cds.MS.gene071758.t1;Parent=MS.gene071758.t1
chr4.4	exon	84843621	84843806	84843621	ID=MS.gene071758.t1.exon7;Parent=MS.gene071758.t1
chr4.4	CDS	84843621	84843806	84843621	ID=cds.MS.gene071758.t1;Parent=MS.gene071758.t1

Gene Sequence

>MS.gene071758

TGGTCATGGAAGCTTTTCAAACAATCCTAAGTTAAACAGTGTTGCGGGGCATTTGCTGCATTCATCAATCCTAGTACCATATCATGGATGGTATGTTTTATGTAGGAATAGTTGTTTTTCTCGTCTTGTAGTACTTTTTGTATTATCTTAATCTGCATTGTTTTTATCTAAGTTTTGAAAGTGCGTTTTACTAATTGTGCAGGAGAATTAGTCATAGAACACATCATCAAAACCATGGCCATGTGAAAATGATGAATCTTGGCACCCGGTAAGCTTATATTCACTGTTCTAGTTTATGGCGAATATGTTTTTGTCCATGATTTCATATAAGAAACTTTATCGTTGACTAGAGTTTTTAAATAACTGCTAAAGCGGTGCTATAACGCTATAGTGTAGTGGGATTTAAACAAATTGCCATTAAAAATGTTGTGAAATAGTGACTATAGCACTAGCGTGCAGCGGAATTTGAACTAACCTGTAACCTCTATTTTCTGCTATTTGATATTGACATCATTGACTTTCAAAATTCAGAGTTTCTAATCCATTACATTTAATTCCAAATCTTGCAGTTGCCAGAGAAAATCTTCAAGAGCTTGGACAATGCAACAAAAATGTTAAGATTTACAATACCTTTTCCAATGCTTGCATATCCTTTCTACCTTGTAAGTTGTAATACCTAACTATTTTACCATAGTTTGAACATGTTTTGCTATTAGTTATGGTGTATGAATTGATCTATGAGGCACGCACACAAAACTCGACACCGACATGTAAACACTGAAAATAGTTTTAGAAAATAGAAGTGATTACATGCAATTACAAGTGTCGGTGTTGAACACTCGGACACACATTCCATCTGAAGTGTCTGTGCTACATAGAATTTTACATTTGTTGTTAATCTTATCTTATGATGGTGTTTGAATTCAGTGGAGCAGGAGTCCTGGGAAGAGTGGTTCTCACTTTGACCCAAATAGTGACTTGTTTGTGCCAAATGAGAGAAAAGATGTTATTACCTCAACAGTATGTTGGACAGCTATGGCTGCTTTGCTTGTAGGTTTAGGATTTGTAATGGGTCCAATTCAATTACTCAAGCTTTATGGCATTCCTTATGTGGTAAATTCCATTCCATCACTTTTTCTAACCATGAATTGGCCACTTTTTTTTAACTCTTTTTTATTCAAAATGAAGTACTAATTTGATATAACTTGAACTTGAAGCTTTTTGTCATGTGGTTGGATTTGGTGACCTATTTGCATCACCATGGCCATGAAGACAAATTACCATGGTATCGTGGACAGGTATCATTCTCCATTCTTTTCCTTATAAATTCTCTCATCAAATTTTTGTTGTTTTTCCTTTATTTTAATCTATTTTTAGCCGATAGAAAGAAAAAAACCAAGCCTTTACTCATTTGGAATAAATTTAGAAGCAATTGGAGTTTTTCAGTAAAATTAAATTTTTCTTGAGAAAGTTTATTTCTTGTTTATGTGGAATTGAAAGTTTTCAAAATTGTCTTGTTTCTCAGCTTTATCTTTCATTTTGTATGGACAGGAATGGAGCTACCTTAGAGGCGGACTTACAACTCTCGATCGTGACTATGGATTGATAAATAACATCCATCATGACATTGGAACTCATGTCATTCATCACTTATTTCCTCAAATCCCACACTACCACTTAATTGAAGCTGTGAGTATCTCTTTTCACATACTCTGTATCCGTCCGCTCTTGATTATAAGCAAAACTAAATATATTTATCCTATTTTTTTCAAATATACCCGTGATTAATACTATTAATTTACCTTGGGAGATAAAAATTAAAGTTGGGCACATATAAACACGAGAGTATTTTCGGAACATCCATACACAAAATAGTCACATTAAATACACTACATATTTTCATTGATATATATGAAAATAACAATAGAAGCTTAAAGTAGTATATTTATGGTATTTTAGGTATGACAACATCAAACAGAATGAAAGTTGTTCAATTTGATGATATTTAAGACTGGCAGTTATGCTTGTATATTTTTACTTATATTCAAGACCAGAGGCAGTGTTTGGATTCTATGCGTTCACGCAATCATTGATTTAGACCACTAAATCAAGATTAGACGGGCCCATATTTCAACTCTGTTTTTGGATTTGATTTACAAAAATCATAATGTAAACCGTCTGATCTTAATCCAACGGTTAAGATAGCGTGCCTGTGTCAAATGTGCGTAACTGCAGAGAATCTAAATACCTCTTTACACTATTCTTGATGAATGAATAATTGAATGGTGATTCTTATGAATTTGAATTTCTTTCCTCTTGTAGACTGAGGCAGCTAAACCAGTTCTTGGAAGATATTACAAAGAGCCAAAGAAATCTAGTCCTTTACCATTTCACCTCCTTGGAGATTTAATAAAAAGCATGAAAAAAGACCATTTTGTCAGTGACACTGGTGATATTGTTTACTATCAAACAGACCCTAACCTTAGTGGCTCTTCTACATCAAAATAA

Protein sequence

>MS.gene071758.t1

WSWKLFKQSUVKQCCGAFAAFINPSTISWMENUSUNTSSKPWPFARENLQELGQCNKNVKIYNTFSNACISFLPLEQESWEEWFSLUPKUULVCAKUEKRCYYLNSMLDSYGCFACRFRICNGSNSITQALWHSLCAFCHVVGFGDLFASPWPURQITMVSWTGMELPURRTYNSRSULWIDKUHPSUHWNSCHSSLISSNPTLPLNUSYUGSUTSSWKILQRAKEIUSFTISPPWRFNKKHEKRPFCQUHWUYCLLSNRPUPUWLFYIKI